AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0024320


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0024320 MtrunA17_Chr1g0178341 94.792 192 9 1 1 192 1 191 1.30e-132 369
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0024320 AT2G36145.1 66.667 129 39 2 67 192 58 185 2.91e-55 174

Find 85 sgRNAs with CRISPR-Local

Find 254 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAAGTTATCTTGTTGGAAAT+TGG 0.165195 1_1:+46773626 Msa0024320:three_prime_UTR
ATTCGATTCCCTGCTCTTTC+AGG 0.177129 1_1:+46772287 Msa0024320:CDS
CATAAGGCTCCTCATGATTC+TGG 0.186944 1_1:-46773348 None:intergenic
TCAAAATACAAAGATTGTTT+TGG 0.243300 1_1:-46773569 None:intergenic
CTTCTTCTCCCACACAAGTA+TGG 0.304767 1_1:-46771981 None:intergenic
TGTCTGGTCGCTTGGAAAAC+TGG 0.306117 1_1:-46773290 None:intergenic
TGATAATGCTTCATTTGTTC+AGG 0.327051 1_1:-46771908 None:intergenic
ATCTTTCATGCGCCCATGTC+TGG 0.333077 1_1:-46773306 None:intergenic
TACCCGATGGAGCAAGATTA+GGG 0.335971 1_1:+46773192 Msa0024320:CDS
TAGAATGAAAGTTATCTTGT+TGG 0.343400 1_1:+46773619 Msa0024320:three_prime_UTR
GTAGCTTCCCGCGGAAACTT+TGG 0.350020 1_1:-46772196 None:intergenic
TAGCTTCCCGCGGAAACTTT+GGG 0.356606 1_1:-46772195 None:intergenic
CAGAATCATGAGGAGCCTTA+TGG 0.369861 1_1:+46773349 Msa0024320:CDS
CTGCCTAATAGTAAACTTGC+AGG 0.372404 1_1:+46773431 Msa0024320:three_prime_UTR
GATTAGGGTTTATAGACATT+GGG 0.375229 1_1:+46773207 Msa0024320:CDS
TCTTGTGTATATTGACTGTT+TGG 0.377674 1_1:+46773241 Msa0024320:CDS
CAATGTTAAGTGGAAGTATA+AGG 0.386707 1_1:+46772016 Msa0024320:CDS
ACTGGAGGAGAACTTTCATT+TGG 0.403885 1_1:-46773272 None:intergenic
TACTACAAGTGAGTTATGAT+TGG 0.404231 1_1:+46773523 Msa0024320:three_prime_UTR
TGCGCCCATGTCTGGTCGCT+TGG 0.407246 1_1:-46773298 None:intergenic
CGACGACGATGGAGTCTCTC+TGG 0.408665 1_1:+46772227 Msa0024320:CDS
ATACCCGATGGAGCAAGATT+AGG 0.409412 1_1:+46773191 Msa0024320:CDS
CATACTTGTGTGGGAGAAGA+AGG 0.416767 1_1:+46771982 Msa0024320:five_prime_UTR
ATAAGGCTCCTCATGATTCT+GGG 0.426970 1_1:-46773347 None:intergenic
AGTATGCAGCTGAGAGGAAC+AGG 0.429627 1_1:+46772057 Msa0024320:CDS
TATGTTGACAGGCAGCTTCA+TGG 0.433103 1_1:-46772253 None:intergenic
GTGGGCAAACAGCCTTTGCC+AGG 0.448746 1_1:+46772519 Msa0024320:intron
CACCCTGCAAGTTTACTATT+AGG 0.448803 1_1:-46773434 None:intergenic
TCAGGTTTCTGTGGAACAAA+TGG 0.450442 1_1:-46771890 None:intergenic
AACCCTAATCTTGCTCCATC+GGG 0.456873 1_1:-46773194 None:intergenic
AGATTAGGGTTTATAGACAT+TGG 0.474730 1_1:+46773206 Msa0024320:CDS
AAACCCTAATCTTGCTCCAT+CGG 0.485972 1_1:-46773195 None:intergenic
CTCTGAAGGTCTATGTTGAC+AGG 0.491476 1_1:-46772264 None:intergenic
ACTACAAGTGAGTTATGATT+GGG 0.496582 1_1:+46773524 Msa0024320:three_prime_UTR
ATATATATACCTGAAAGAGC+AGG 0.507742 1_1:-46772296 None:intergenic
GGCTATGAAGCACGAGAGAA+TGG 0.509927 1_1:-46772149 None:intergenic
CAAGTTTACTATTAGGCAGA+AGG 0.511743 1_1:-46773427 None:intergenic
CTCATGATTCTGGGCTCACC+CGG 0.516530 1_1:-46773338 None:intergenic
AAAGTGGTAGACTGGCTCCC+TGG 0.531601 1_1:-46772537 None:intergenic
ACTTCTGAAGAGCTTCCATA+AGG 0.531730 1_1:-46773364 None:intergenic
GAGACTCCATCGTCGTCGGT+GGG 0.532066 1_1:-46772222 None:intergenic
CATGAAAGATAAGGTGCCGC+CGG 0.533196 1_1:+46773319 Msa0024320:CDS
AGGCGTGGAAAGTGGTAGAC+TGG 0.536072 1_1:-46772545 None:intergenic
TGGGTGCCGCCACCGTGAGA+TGG 0.538827 1_1:-46772176 None:intergenic
GTAGACTGGCTCCCTGGCAA+AGG 0.542128 1_1:-46772531 None:intergenic
TTCATTTGTTCAGGTTTCTG+TGG 0.542753 1_1:-46771899 None:intergenic
CATAACTAATGTTGTATATG+TGG 0.547143 1_1:+46773593 Msa0024320:three_prime_UTR
AGAGACTCCATCGTCGTCGG+TGG 0.551810 1_1:-46772223 None:intergenic
GTTCAGATTGCCTCATTGTG+AGG 0.553621 1_1:+46773389 Msa0024320:CDS
AAAGACATGGCAATGTTAAG+TGG 0.558136 1_1:+46772006 Msa0024320:exon
ACCACTTTCCACGCCTCTCA+AGG 0.558258 1_1:+46772552 Msa0024320:CDS
TCATAGCCGCTTCCATCTCA+CGG 0.563505 1_1:+46772164 Msa0024320:CDS
ATGAAAGATAAGGTGCCGCC+GGG 0.567047 1_1:+46773320 Msa0024320:CDS
ACCTTGAGAGGCGTGGAAAG+TGG 0.572117 1_1:-46772553 None:intergenic
TGAATGAGGGAGTGCTGAGA+AGG 0.573174 1_1:-46772102 None:intergenic
CCGCTTCCATCTCACGGTGG+CGG 0.573530 1_1:+46772170 Msa0024320:CDS
CCGCCACCGTGAGATGGAAG+CGG 0.579890 1_1:-46772170 None:intergenic
TGTTGTGATAACTATGAATG+AGG 0.580965 1_1:-46772116 None:intergenic
GCGGCACCCAAAGTTTCCGC+GGG 0.582964 1_1:+46772189 Msa0024320:CDS
ACATGGGCGCATGAAAGATA+AGG 0.585008 1_1:+46773310 Msa0024320:CDS
AGGGAGTGCTGAGAAGGCAG+TGG 0.586484 1_1:-46772096 None:intergenic
AGTTACAAACCATACTTGTG+TGG 0.589727 1_1:+46771972 Msa0024320:five_prime_UTR
ATTAGGGTTTATAGACATTG+GGG 0.590232 1_1:+46773208 Msa0024320:CDS
TTATATATGTGTACCTTGAG+AGG 0.592519 1_1:-46772565 None:intergenic
GACGACGATGGAGTCTCTCT+GGG 0.598218 1_1:+46772228 Msa0024320:CDS
GGCGGCACCCAAAGTTTCCG+CGG 0.598516 1_1:+46772188 Msa0024320:CDS
AGACTCCATCGTCGTCGGTG+GGG 0.604451 1_1:-46772221 None:intergenic
TATATATACCTGAAAGAGCA+GGG 0.607634 1_1:-46772295 None:intergenic
GTTACAAACCATACTTGTGT+GGG 0.609655 1_1:+46771973 Msa0024320:five_prime_UTR
TGGGCAAACAGCCTTTGCCA+GGG 0.611651 1_1:+46772520 Msa0024320:CDS
CAGAGAGACTCCATCGTCGT+CGG 0.615294 1_1:-46772226 None:intergenic
ATACTTGTGTGGGAGAAGAA+GGG 0.618695 1_1:+46771983 Msa0024320:five_prime_UTR
GTTGTGATAACTATGAATGA+GGG 0.624477 1_1:-46772115 None:intergenic
GCAGGGAATCGAATCTCTGA+AGG 0.624992 1_1:-46772278 None:intergenic
TGCCTAATAGTAAACTTGCA+GGG 0.635903 1_1:+46773432 Msa0024320:three_prime_UTR
TACAGCCCCACCGACGACGA+TGG 0.636039 1_1:+46772216 Msa0024320:CDS
CAGGTTGACAAAATACCCGA+TGG 0.647625 1_1:+46773179 Msa0024320:intron
GGTGGGGCTGTAGCTTCCCG+CGG 0.664372 1_1:-46772205 None:intergenic
CTGGTCGCTTGGAAAACTGG+AGG 0.670468 1_1:-46773287 None:intergenic
TATGTGTACCTTGAGAGGCG+TGG 0.685226 1_1:-46772560 None:intergenic
ATGATTCTGGGCTCACCCGG+CGG 0.687233 1_1:-46773335 None:intergenic
CGGGTGAGCCCAGAATCATG+AGG 0.694987 1_1:+46773339 Msa0024320:CDS
GGGAGAAGAAGGGAAAGACA+TGG 0.707832 1_1:+46771993 Msa0024320:exon
TGCTTGAGTATGCAGCTGAG+AGG 0.735580 1_1:+46772051 Msa0024320:CDS
TAGCCGCTTCCATCTCACGG+TGG 0.794636 1_1:+46772167 Msa0024320:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTTATTTTTTTCGACTAA+AGG - chr1_1:46771934-46771953 None:intergenic 15.0%
!! TATATTATACTACTATGTTT+AGG + chr1_1:46772314-46772333 Msa0024320:intron 15.0%
!! GTTAAATATAAGAATAATGT+TGG - chr1_1:46772430-46772449 None:intergenic 15.0%
!!! AAATTTCAAGTTAAACTAAT+AGG - chr1_1:46772635-46772654 None:intergenic 15.0%
!! TATAATTTGAATTTCTAACT+AGG - chr1_1:46772821-46772840 None:intergenic 15.0%
!! TTAGAAATTCAAATTATAGA+TGG + chr1_1:46772823-46772842 Msa0024320:intron 15.0%
!! TCATTTCAATTTAATAAAAC+AGG + chr1_1:46773160-46773179 Msa0024320:intron 15.0%
!!! TATTTATTTTTTTCGACTAA+AGG - chr1_1:46771934-46771953 None:intergenic 15.0%
!! TATATTATACTACTATGTTT+AGG + chr1_1:46772314-46772333 Msa0024320:intron 15.0%
!! GTTAAATATAAGAATAATGT+TGG - chr1_1:46772430-46772449 None:intergenic 15.0%
!!! AAATTTCAAGTTAAACTAAT+AGG - chr1_1:46772635-46772654 None:intergenic 15.0%
!! TATAATTTGAATTTCTAACT+AGG - chr1_1:46772821-46772840 None:intergenic 15.0%
!! TTAGAAATTCAAATTATAGA+TGG + chr1_1:46772823-46772842 Msa0024320:intron 15.0%
!! TCATTTCAATTTAATAAAAC+AGG + chr1_1:46773160-46773179 Msa0024320:intron 15.0%
!!! ATTATAATTTTGTTCGTCAA+TGG - chr1_1:46772486-46772505 None:intergenic 20.0%
!!! CAAAATACAAAGATTGTTTT+GGG - chr1_1:46773571-46773590 None:intergenic 20.0%
!!! TCAAAATACAAAGATTGTTT+TGG - chr1_1:46773572-46773591 None:intergenic 20.0%
!!! ATTATAATTTTGTTCGTCAA+TGG - chr1_1:46772486-46772505 None:intergenic 20.0%
!!! CAAAATACAAAGATTGTTTT+GGG - chr1_1:46773571-46773590 None:intergenic 20.0%
!!! TCAAAATACAAAGATTGTTT+TGG - chr1_1:46773572-46773591 None:intergenic 20.0%
! AACAATGAAATGCATTAACA+AGG - chr1_1:46772605-46772624 None:intergenic 25.0%
! GGAACTTAAAACAAATCAAA+TGG - chr1_1:46772725-46772744 None:intergenic 25.0%
!!! TAACACCGTGTTTTAAATAA+CGG + chr1_1:46772846-46772865 Msa0024320:intron 25.0%
! ATTAAAAAAACCTCACAATG+AGG - chr1_1:46773402-46773421 None:intergenic 25.0%
! CATAACTAATGTTGTATATG+TGG + chr1_1:46773593-46773612 Msa0024320:three_prime_UTR 25.0%
! TAGAATGAAAGTTATCTTGT+TGG + chr1_1:46773619-46773638 Msa0024320:three_prime_UTR 25.0%
! AAAGTTATCTTGTTGGAAAT+TGG + chr1_1:46773626-46773645 Msa0024320:three_prime_UTR 25.0%
!! TTTTCACAAGTTTCATGAAT+AGG + chr1_1:46773663-46773682 Msa0024320:three_prime_UTR 25.0%
! TTTCACAAGTTTCATGAATA+GGG + chr1_1:46773664-46773683 Msa0024320:three_prime_UTR 25.0%
! AACAATGAAATGCATTAACA+AGG - chr1_1:46772605-46772624 None:intergenic 25.0%
! GGAACTTAAAACAAATCAAA+TGG - chr1_1:46772725-46772744 None:intergenic 25.0%
!!! TAACACCGTGTTTTAAATAA+CGG + chr1_1:46772846-46772865 Msa0024320:intron 25.0%
! ATTAAAAAAACCTCACAATG+AGG - chr1_1:46773402-46773421 None:intergenic 25.0%
! CATAACTAATGTTGTATATG+TGG + chr1_1:46773593-46773612 Msa0024320:three_prime_UTR 25.0%
! TAGAATGAAAGTTATCTTGT+TGG + chr1_1:46773619-46773638 Msa0024320:three_prime_UTR 25.0%
! AAAGTTATCTTGTTGGAAAT+TGG + chr1_1:46773626-46773645 Msa0024320:three_prime_UTR 25.0%
! TGATAATGCTTCATTTGTTC+AGG - chr1_1:46771911-46771930 None:intergenic 30.0%
! CAATGTTAAGTGGAAGTATA+AGG + chr1_1:46772016-46772035 Msa0024320:CDS 30.0%
GTTGTGATAACTATGAATGA+GGG - chr1_1:46772118-46772137 None:intergenic 30.0%
TGTTGTGATAACTATGAATG+AGG - chr1_1:46772119-46772138 None:intergenic 30.0%
TATATATACCTGAAAGAGCA+GGG - chr1_1:46772298-46772317 None:intergenic 30.0%
ATATATATACCTGAAAGAGC+AGG - chr1_1:46772299-46772318 None:intergenic 30.0%
ATGTTGAAGAAACGCAATTT+AGG - chr1_1:46772355-46772374 None:intergenic 30.0%
! TATAATTTGTGTTGTGACAG+TGG + chr1_1:46772500-46772519 Msa0024320:intron 30.0%
! ATAATTTGTGTTGTGACAGT+GGG + chr1_1:46772501-46772520 Msa0024320:intron 30.0%
TTATATATGTGTACCTTGAG+AGG - chr1_1:46772568-46772587 None:intergenic 30.0%
TGAAATGCATTAACAAGGAA+CGG - chr1_1:46772600-46772619 None:intergenic 30.0%
TTTGAATTTCTAACTAGGCT+AGG - chr1_1:46772816-46772835 None:intergenic 30.0%
! CATGACCGTTATTTAAAACA+CGG - chr1_1:46772854-46772873 None:intergenic 30.0%
TTATTGTAGCGTATAGTCTA+GGG - chr1_1:46772987-46773006 None:intergenic 30.0%
AGATTAGGGTTTATAGACAT+TGG + chr1_1:46773206-46773225 Msa0024320:CDS 30.0%
GATTAGGGTTTATAGACATT+GGG + chr1_1:46773207-46773226 Msa0024320:CDS 30.0%
ATTAGGGTTTATAGACATTG+GGG + chr1_1:46773208-46773227 Msa0024320:CDS 30.0%
! TCTTGTGTATATTGACTGTT+TGG + chr1_1:46773241-46773260 Msa0024320:CDS 30.0%
TACTACAAGTGAGTTATGAT+TGG + chr1_1:46773523-46773542 Msa0024320:three_prime_UTR 30.0%
ACTACAAGTGAGTTATGATT+GGG + chr1_1:46773524-46773543 Msa0024320:three_prime_UTR 30.0%
! TGATAATGCTTCATTTGTTC+AGG - chr1_1:46771911-46771930 None:intergenic 30.0%
! CAATGTTAAGTGGAAGTATA+AGG + chr1_1:46772016-46772035 Msa0024320:CDS 30.0%
GTTGTGATAACTATGAATGA+GGG - chr1_1:46772118-46772137 None:intergenic 30.0%
TGTTGTGATAACTATGAATG+AGG - chr1_1:46772119-46772138 None:intergenic 30.0%
TATATATACCTGAAAGAGCA+GGG - chr1_1:46772298-46772317 None:intergenic 30.0%
ATATATATACCTGAAAGAGC+AGG - chr1_1:46772299-46772318 None:intergenic 30.0%
ATGTTGAAGAAACGCAATTT+AGG - chr1_1:46772355-46772374 None:intergenic 30.0%
! TATAATTTGTGTTGTGACAG+TGG + chr1_1:46772500-46772519 Msa0024320:intron 30.0%
! ATAATTTGTGTTGTGACAGT+GGG + chr1_1:46772501-46772520 Msa0024320:intron 30.0%
TTATATATGTGTACCTTGAG+AGG - chr1_1:46772568-46772587 None:intergenic 30.0%
TGAAATGCATTAACAAGGAA+CGG - chr1_1:46772600-46772619 None:intergenic 30.0%
TTTGAATTTCTAACTAGGCT+AGG - chr1_1:46772816-46772835 None:intergenic 30.0%
! CATGACCGTTATTTAAAACA+CGG - chr1_1:46772854-46772873 None:intergenic 30.0%
TTATTGTAGCGTATAGTCTA+GGG - chr1_1:46772987-46773006 None:intergenic 30.0%
AGATTAGGGTTTATAGACAT+TGG + chr1_1:46773206-46773225 Msa0024320:CDS 30.0%
GATTAGGGTTTATAGACATT+GGG + chr1_1:46773207-46773226 Msa0024320:CDS 30.0%
ATTAGGGTTTATAGACATTG+GGG + chr1_1:46773208-46773227 Msa0024320:CDS 30.0%
! TCTTGTGTATATTGACTGTT+TGG + chr1_1:46773241-46773260 Msa0024320:CDS 30.0%
TACTACAAGTGAGTTATGAT+TGG + chr1_1:46773523-46773542 Msa0024320:three_prime_UTR 30.0%
ACTACAAGTGAGTTATGATT+GGG + chr1_1:46773524-46773543 Msa0024320:three_prime_UTR 30.0%
! TTCATTTGTTCAGGTTTCTG+TGG - chr1_1:46771902-46771921 None:intergenic 35.0%
AGTTACAAACCATACTTGTG+TGG + chr1_1:46771972-46771991 Msa0024320:five_prime_UTR 35.0%
GTTACAAACCATACTTGTGT+GGG + chr1_1:46771973-46771992 Msa0024320:five_prime_UTR 35.0%
AAAGACATGGCAATGTTAAG+TGG + chr1_1:46772006-46772025 Msa0024320:exon 35.0%
GAAATGCATTAACAAGGAAC+GGG - chr1_1:46772599-46772618 None:intergenic 35.0%
TTGATACTCTTAGCTTCCTA+TGG + chr1_1:46772696-46772715 Msa0024320:intron 35.0%
ACAAATCAAATGGCTACCAT+AGG - chr1_1:46772715-46772734 None:intergenic 35.0%
!! CGTGTTTTAAATAACGGTCA+TGG + chr1_1:46772852-46772871 Msa0024320:intron 35.0%
CTTGATTCTCCATAATAGCA+AGG - chr1_1:46772902-46772921 None:intergenic 35.0%
!! CTTGCTATTATGGAGAATCA+AGG + chr1_1:46772900-46772919 Msa0024320:intron 35.0%
ATTATGGAGAATCAAGGTTG+CGG + chr1_1:46772906-46772925 Msa0024320:intron 35.0%
CTTATTGTAGCGTATAGTCT+AGG - chr1_1:46772988-46773007 None:intergenic 35.0%
GACTATACGCTACAATAAGA+TGG + chr1_1:46772989-46773008 Msa0024320:intron 35.0%
AGTGTTTGTGACATTGTTCT+TGG - chr1_1:46773056-46773075 None:intergenic 35.0%
CAAGTTTACTATTAGGCAGA+AGG - chr1_1:46773430-46773449 None:intergenic 35.0%
TGCCTAATAGTAAACTTGCA+GGG + chr1_1:46773432-46773451 Msa0024320:three_prime_UTR 35.0%
! TTCATTTGTTCAGGTTTCTG+TGG - chr1_1:46771902-46771921 None:intergenic 35.0%
AGTTACAAACCATACTTGTG+TGG + chr1_1:46771972-46771991 Msa0024320:five_prime_UTR 35.0%
GTTACAAACCATACTTGTGT+GGG + chr1_1:46771973-46771992 Msa0024320:five_prime_UTR 35.0%
AAAGACATGGCAATGTTAAG+TGG + chr1_1:46772006-46772025 Msa0024320:exon 35.0%
GAAATGCATTAACAAGGAAC+GGG - chr1_1:46772599-46772618 None:intergenic 35.0%
TTGATACTCTTAGCTTCCTA+TGG + chr1_1:46772696-46772715 Msa0024320:intron 35.0%
ACAAATCAAATGGCTACCAT+AGG - chr1_1:46772715-46772734 None:intergenic 35.0%
!! CGTGTTTTAAATAACGGTCA+TGG + chr1_1:46772852-46772871 Msa0024320:intron 35.0%
CTTGATTCTCCATAATAGCA+AGG - chr1_1:46772902-46772921 None:intergenic 35.0%
!! CTTGCTATTATGGAGAATCA+AGG + chr1_1:46772900-46772919 Msa0024320:intron 35.0%
ATTATGGAGAATCAAGGTTG+CGG + chr1_1:46772906-46772925 Msa0024320:intron 35.0%
CTTATTGTAGCGTATAGTCT+AGG - chr1_1:46772988-46773007 None:intergenic 35.0%
GACTATACGCTACAATAAGA+TGG + chr1_1:46772989-46773008 Msa0024320:intron 35.0%
AGTGTTTGTGACATTGTTCT+TGG - chr1_1:46773056-46773075 None:intergenic 35.0%
CAAGTTTACTATTAGGCAGA+AGG - chr1_1:46773430-46773449 None:intergenic 35.0%
TGCCTAATAGTAAACTTGCA+GGG + chr1_1:46773432-46773451 Msa0024320:three_prime_UTR 35.0%
TCAGGTTTCTGTGGAACAAA+TGG - chr1_1:46771893-46771912 None:intergenic 40.0%
ATACTTGTGTGGGAGAAGAA+GGG + chr1_1:46771983-46772002 Msa0024320:five_prime_UTR 40.0%
TAAGTTCCTTAAGTTCACGC+TGG + chr1_1:46772737-46772756 Msa0024320:intron 40.0%
!! AGTCGTGATCCTTGCTATTA+TGG + chr1_1:46772890-46772909 Msa0024320:intron 40.0%
GGTACATACTACTTAGCTGT+AGG - chr1_1:46773035-46773054 None:intergenic 40.0%
AAACCCTAATCTTGCTCCAT+CGG - chr1_1:46773198-46773217 None:intergenic 40.0%
ACTGGAGGAGAACTTTCATT+TGG - chr1_1:46773275-46773294 None:intergenic 40.0%
ATAAGGCTCCTCATGATTCT+GGG - chr1_1:46773350-46773369 None:intergenic 40.0%
! ACTTCTGAAGAGCTTCCATA+AGG - chr1_1:46773367-46773386 None:intergenic 40.0%
CTGCCTAATAGTAAACTTGC+AGG + chr1_1:46773431-46773450 Msa0024320:three_prime_UTR 40.0%
CACCCTGCAAGTTTACTATT+AGG - chr1_1:46773437-46773456 None:intergenic 40.0%
TCAGGTTTCTGTGGAACAAA+TGG - chr1_1:46771893-46771912 None:intergenic 40.0%
ATACTTGTGTGGGAGAAGAA+GGG + chr1_1:46771983-46772002 Msa0024320:five_prime_UTR 40.0%
TAAGTTCCTTAAGTTCACGC+TGG + chr1_1:46772737-46772756 Msa0024320:intron 40.0%
!! AGTCGTGATCCTTGCTATTA+TGG + chr1_1:46772890-46772909 Msa0024320:intron 40.0%
GGTACATACTACTTAGCTGT+AGG - chr1_1:46773035-46773054 None:intergenic 40.0%
AAACCCTAATCTTGCTCCAT+CGG - chr1_1:46773198-46773217 None:intergenic 40.0%
ACTGGAGGAGAACTTTCATT+TGG - chr1_1:46773275-46773294 None:intergenic 40.0%
ATAAGGCTCCTCATGATTCT+GGG - chr1_1:46773350-46773369 None:intergenic 40.0%
! ACTTCTGAAGAGCTTCCATA+AGG - chr1_1:46773367-46773386 None:intergenic 40.0%
CTGCCTAATAGTAAACTTGC+AGG + chr1_1:46773431-46773450 Msa0024320:three_prime_UTR 40.0%
CACCCTGCAAGTTTACTATT+AGG - chr1_1:46773437-46773456 None:intergenic 40.0%
CTTCTTCTCCCACACAAGTA+TGG - chr1_1:46771984-46772003 None:intergenic 45.0%
CATACTTGTGTGGGAGAAGA+AGG + chr1_1:46771982-46772001 Msa0024320:five_prime_UTR 45.0%
TATGTTGACAGGCAGCTTCA+TGG - chr1_1:46772256-46772275 None:intergenic 45.0%
! CTCTGAAGGTCTATGTTGAC+AGG - chr1_1:46772267-46772286 None:intergenic 45.0%
ATTCGATTCCCTGCTCTTTC+AGG + chr1_1:46772287-46772306 Msa0024320:CDS 45.0%
AGCTATCCAGCGTGAACTTA+AGG - chr1_1:46772746-46772765 None:intergenic 45.0%
TTGTAATGCCATCCCGATTG+AGG - chr1_1:46772941-46772960 None:intergenic 45.0%
! CAGGTTGACAAAATACCCGA+TGG + chr1_1:46773179-46773198 Msa0024320:intron 45.0%
ATACCCGATGGAGCAAGATT+AGG + chr1_1:46773191-46773210 Msa0024320:CDS 45.0%
TACCCGATGGAGCAAGATTA+GGG + chr1_1:46773192-46773211 Msa0024320:CDS 45.0%
AACCCTAATCTTGCTCCATC+GGG - chr1_1:46773197-46773216 None:intergenic 45.0%
! TTTTCCAAGCGACCAGACAT+GGG + chr1_1:46773294-46773313 Msa0024320:CDS 45.0%
ACATGGGCGCATGAAAGATA+AGG + chr1_1:46773310-46773329 Msa0024320:CDS 45.0%
CATAAGGCTCCTCATGATTC+TGG - chr1_1:46773351-46773370 None:intergenic 45.0%
CAGAATCATGAGGAGCCTTA+TGG + chr1_1:46773349-46773368 Msa0024320:CDS 45.0%
GTTCAGATTGCCTCATTGTG+AGG + chr1_1:46773389-46773408 Msa0024320:CDS 45.0%
CTTCTTCTCCCACACAAGTA+TGG - chr1_1:46771984-46772003 None:intergenic 45.0%
CATACTTGTGTGGGAGAAGA+AGG + chr1_1:46771982-46772001 Msa0024320:five_prime_UTR 45.0%
TATGTTGACAGGCAGCTTCA+TGG - chr1_1:46772256-46772275 None:intergenic 45.0%
! CTCTGAAGGTCTATGTTGAC+AGG - chr1_1:46772267-46772286 None:intergenic 45.0%
ATTCGATTCCCTGCTCTTTC+AGG + chr1_1:46772287-46772306 Msa0024320:CDS 45.0%
AGCTATCCAGCGTGAACTTA+AGG - chr1_1:46772746-46772765 None:intergenic 45.0%
TTGTAATGCCATCCCGATTG+AGG - chr1_1:46772941-46772960 None:intergenic 45.0%
! CAGGTTGACAAAATACCCGA+TGG + chr1_1:46773179-46773198 Msa0024320:intron 45.0%
ATACCCGATGGAGCAAGATT+AGG + chr1_1:46773191-46773210 Msa0024320:CDS 45.0%
TACCCGATGGAGCAAGATTA+GGG + chr1_1:46773192-46773211 Msa0024320:CDS 45.0%
AACCCTAATCTTGCTCCATC+GGG - chr1_1:46773197-46773216 None:intergenic 45.0%
! TTTTCCAAGCGACCAGACAT+GGG + chr1_1:46773294-46773313 Msa0024320:CDS 45.0%
ACATGGGCGCATGAAAGATA+AGG + chr1_1:46773310-46773329 Msa0024320:CDS 45.0%
CATAAGGCTCCTCATGATTC+TGG - chr1_1:46773351-46773370 None:intergenic 45.0%
CAGAATCATGAGGAGCCTTA+TGG + chr1_1:46773349-46773368 Msa0024320:CDS 45.0%
GTTCAGATTGCCTCATTGTG+AGG + chr1_1:46773389-46773408 Msa0024320:CDS 45.0%
GGGAGAAGAAGGGAAAGACA+TGG + chr1_1:46771993-46772012 Msa0024320:exon 50.0%
TGCTTGAGTATGCAGCTGAG+AGG + chr1_1:46772051-46772070 Msa0024320:CDS 50.0%
AGTATGCAGCTGAGAGGAAC+AGG + chr1_1:46772057-46772076 Msa0024320:CDS 50.0%
!! TGAATGAGGGAGTGCTGAGA+AGG - chr1_1:46772105-46772124 None:intergenic 50.0%
GGCTATGAAGCACGAGAGAA+TGG - chr1_1:46772152-46772171 None:intergenic 50.0%
TCATAGCCGCTTCCATCTCA+CGG + chr1_1:46772164-46772183 Msa0024320:CDS 50.0%
TAGCTTCCCGCGGAAACTTT+GGG - chr1_1:46772198-46772217 None:intergenic 50.0%
GCAGGGAATCGAATCTCTGA+AGG - chr1_1:46772281-46772300 None:intergenic 50.0%
TATGTGTACCTTGAGAGGCG+TGG - chr1_1:46772563-46772582 None:intergenic 50.0%
TGTCTGGTCGCTTGGAAAAC+TGG - chr1_1:46773293-46773312 None:intergenic 50.0%
! GTTTTCCAAGCGACCAGACA+TGG + chr1_1:46773293-46773312 Msa0024320:CDS 50.0%
ATCTTTCATGCGCCCATGTC+TGG - chr1_1:46773309-46773328 None:intergenic 50.0%
!! CATGAAAGATAAGGTGCCGC+CGG + chr1_1:46773319-46773338 Msa0024320:CDS 50.0%
!! ATGAAAGATAAGGTGCCGCC+GGG + chr1_1:46773320-46773339 Msa0024320:CDS 50.0%
GGGAGAAGAAGGGAAAGACA+TGG + chr1_1:46771993-46772012 Msa0024320:exon 50.0%
TGCTTGAGTATGCAGCTGAG+AGG + chr1_1:46772051-46772070 Msa0024320:CDS 50.0%
AGTATGCAGCTGAGAGGAAC+AGG + chr1_1:46772057-46772076 Msa0024320:CDS 50.0%
!! TGAATGAGGGAGTGCTGAGA+AGG - chr1_1:46772105-46772124 None:intergenic 50.0%
GGCTATGAAGCACGAGAGAA+TGG - chr1_1:46772152-46772171 None:intergenic 50.0%
TCATAGCCGCTTCCATCTCA+CGG + chr1_1:46772164-46772183 Msa0024320:CDS 50.0%
TAGCTTCCCGCGGAAACTTT+GGG - chr1_1:46772198-46772217 None:intergenic 50.0%
GCAGGGAATCGAATCTCTGA+AGG - chr1_1:46772281-46772300 None:intergenic 50.0%
TATGTGTACCTTGAGAGGCG+TGG - chr1_1:46772563-46772582 None:intergenic 50.0%
TGTCTGGTCGCTTGGAAAAC+TGG - chr1_1:46773293-46773312 None:intergenic 50.0%
! GTTTTCCAAGCGACCAGACA+TGG + chr1_1:46773293-46773312 Msa0024320:CDS 50.0%
ATCTTTCATGCGCCCATGTC+TGG - chr1_1:46773309-46773328 None:intergenic 50.0%
!! CATGAAAGATAAGGTGCCGC+CGG + chr1_1:46773319-46773338 Msa0024320:CDS 50.0%
!! ATGAAAGATAAGGTGCCGCC+GGG + chr1_1:46773320-46773339 Msa0024320:CDS 50.0%
GTAGCTTCCCGCGGAAACTT+TGG - chr1_1:46772199-46772218 None:intergenic 55.0%
CAGAGAGACTCCATCGTCGT+CGG - chr1_1:46772229-46772248 None:intergenic 55.0%
GACGACGATGGAGTCTCTCT+GGG + chr1_1:46772228-46772247 Msa0024320:CDS 55.0%
TGGGCAAACAGCCTTTGCCA+GGG + chr1_1:46772520-46772539 Msa0024320:CDS 55.0%
! AAAGTGGTAGACTGGCTCCC+TGG - chr1_1:46772540-46772559 None:intergenic 55.0%
AGGCGTGGAAAGTGGTAGAC+TGG - chr1_1:46772548-46772567 None:intergenic 55.0%
ACCACTTTCCACGCCTCTCA+AGG + chr1_1:46772552-46772571 Msa0024320:CDS 55.0%
! ACCTTGAGAGGCGTGGAAAG+TGG - chr1_1:46772556-46772575 None:intergenic 55.0%
CATCCCGATTGAGGCTGCAT+TGG - chr1_1:46772932-46772951 None:intergenic 55.0%
CAATGCAGCCTCAATCGGGA+TGG + chr1_1:46772930-46772949 Msa0024320:intron 55.0%
CTGGTCGCTTGGAAAACTGG+AGG - chr1_1:46773290-46773309 None:intergenic 55.0%
CTCATGATTCTGGGCTCACC+CGG - chr1_1:46773341-46773360 None:intergenic 55.0%
GTAGCTTCCCGCGGAAACTT+TGG - chr1_1:46772199-46772218 None:intergenic 55.0%
CAGAGAGACTCCATCGTCGT+CGG - chr1_1:46772229-46772248 None:intergenic 55.0%
GACGACGATGGAGTCTCTCT+GGG + chr1_1:46772228-46772247 Msa0024320:CDS 55.0%
TGGGCAAACAGCCTTTGCCA+GGG + chr1_1:46772520-46772539 Msa0024320:CDS 55.0%
! AAAGTGGTAGACTGGCTCCC+TGG - chr1_1:46772540-46772559 None:intergenic 55.0%
AGGCGTGGAAAGTGGTAGAC+TGG - chr1_1:46772548-46772567 None:intergenic 55.0%
ACCACTTTCCACGCCTCTCA+AGG + chr1_1:46772552-46772571 Msa0024320:CDS 55.0%
! ACCTTGAGAGGCGTGGAAAG+TGG - chr1_1:46772556-46772575 None:intergenic 55.0%
CATCCCGATTGAGGCTGCAT+TGG - chr1_1:46772932-46772951 None:intergenic 55.0%
CAATGCAGCCTCAATCGGGA+TGG + chr1_1:46772930-46772949 Msa0024320:intron 55.0%
CTGGTCGCTTGGAAAACTGG+AGG - chr1_1:46773290-46773309 None:intergenic 55.0%
CTCATGATTCTGGGCTCACC+CGG - chr1_1:46773341-46773360 None:intergenic 55.0%
!! AGGGAGTGCTGAGAAGGCAG+TGG - chr1_1:46772099-46772118 None:intergenic 60.0%
TAGCCGCTTCCATCTCACGG+TGG + chr1_1:46772167-46772186 Msa0024320:CDS 60.0%
AGACTCCATCGTCGTCGGTG+GGG - chr1_1:46772224-46772243 None:intergenic 60.0%
GAGACTCCATCGTCGTCGGT+GGG - chr1_1:46772225-46772244 None:intergenic 60.0%
AGAGACTCCATCGTCGTCGG+TGG - chr1_1:46772226-46772245 None:intergenic 60.0%
CGACGACGATGGAGTCTCTC+TGG + chr1_1:46772227-46772246 Msa0024320:CDS 60.0%
GTGGGCAAACAGCCTTTGCC+AGG + chr1_1:46772519-46772538 Msa0024320:intron 60.0%
! GTAGACTGGCTCCCTGGCAA+AGG - chr1_1:46772534-46772553 None:intergenic 60.0%
GCGGCCAATGCAGCCTCAAT+CGG + chr1_1:46772925-46772944 Msa0024320:intron 60.0%
CGGCCAATGCAGCCTCAATC+GGG + chr1_1:46772926-46772945 Msa0024320:intron 60.0%
ATGATTCTGGGCTCACCCGG+CGG - chr1_1:46773338-46773357 None:intergenic 60.0%
CGGGTGAGCCCAGAATCATG+AGG + chr1_1:46773339-46773358 Msa0024320:CDS 60.0%
!! AGGGAGTGCTGAGAAGGCAG+TGG - chr1_1:46772099-46772118 None:intergenic 60.0%
TAGCCGCTTCCATCTCACGG+TGG + chr1_1:46772167-46772186 Msa0024320:CDS 60.0%
AGACTCCATCGTCGTCGGTG+GGG - chr1_1:46772224-46772243 None:intergenic 60.0%
GAGACTCCATCGTCGTCGGT+GGG - chr1_1:46772225-46772244 None:intergenic 60.0%
AGAGACTCCATCGTCGTCGG+TGG - chr1_1:46772226-46772245 None:intergenic 60.0%
CGACGACGATGGAGTCTCTC+TGG + chr1_1:46772227-46772246 Msa0024320:CDS 60.0%
GTGGGCAAACAGCCTTTGCC+AGG + chr1_1:46772519-46772538 Msa0024320:intron 60.0%
! GTAGACTGGCTCCCTGGCAA+AGG - chr1_1:46772534-46772553 None:intergenic 60.0%
GCGGCCAATGCAGCCTCAAT+CGG + chr1_1:46772925-46772944 Msa0024320:intron 60.0%
CGGCCAATGCAGCCTCAATC+GGG + chr1_1:46772926-46772945 Msa0024320:intron 60.0%
ATGATTCTGGGCTCACCCGG+CGG - chr1_1:46773338-46773357 None:intergenic 60.0%
CGGGTGAGCCCAGAATCATG+AGG + chr1_1:46773339-46773358 Msa0024320:CDS 60.0%
CCGCCACCGTGAGATGGAAG+CGG - chr1_1:46772173-46772192 None:intergenic 65.0%
CCGCTTCCATCTCACGGTGG+CGG + chr1_1:46772170-46772189 Msa0024320:CDS 65.0%
GGCGGCACCCAAAGTTTCCG+CGG + chr1_1:46772188-46772207 Msa0024320:CDS 65.0%
GCGGCACCCAAAGTTTCCGC+GGG + chr1_1:46772189-46772208 Msa0024320:CDS 65.0%
TACAGCCCCACCGACGACGA+TGG + chr1_1:46772216-46772235 Msa0024320:CDS 65.0%
TGCGCCCATGTCTGGTCGCT+TGG - chr1_1:46773301-46773320 None:intergenic 65.0%
CCGCCACCGTGAGATGGAAG+CGG - chr1_1:46772173-46772192 None:intergenic 65.0%
CCGCTTCCATCTCACGGTGG+CGG + chr1_1:46772170-46772189 Msa0024320:CDS 65.0%
GGCGGCACCCAAAGTTTCCG+CGG + chr1_1:46772188-46772207 Msa0024320:CDS 65.0%
GCGGCACCCAAAGTTTCCGC+GGG + chr1_1:46772189-46772208 Msa0024320:CDS 65.0%
TACAGCCCCACCGACGACGA+TGG + chr1_1:46772216-46772235 Msa0024320:CDS 65.0%
TGCGCCCATGTCTGGTCGCT+TGG - chr1_1:46773301-46773320 None:intergenic 65.0%
! TGGGTGCCGCCACCGTGAGA+TGG - chr1_1:46772179-46772198 None:intergenic 70.0%
GGTGGGGCTGTAGCTTCCCG+CGG - chr1_1:46772208-46772227 None:intergenic 70.0%
! TGGGTGCCGCCACCGTGAGA+TGG - chr1_1:46772179-46772198 None:intergenic 70.0%
GGTGGGGCTGTAGCTTCCCG+CGG - chr1_1:46772208-46772227 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 46771876 46773683 46771876 ID=Msa0024320;Name=Msa0024320
chr1_1 mRNA 46771876 46773683 46771876 ID=Msa0024320-mRNA-1;Parent=Msa0024320;Name=Msa0024320-mRNA-1;_AED=0.00;_eAED=0.00;_QI=136|1|1|1|1|1|3|274|192
chr1_1 exon 46771876 46772308 46771876 ID=Msa0024320-mRNA-1:exon:13257;Parent=Msa0024320-mRNA-1
chr1_1 exon 46772520 46772573 46772520 ID=Msa0024320-mRNA-1:exon:13258;Parent=Msa0024320-mRNA-1
chr1_1 exon 46773182 46773683 46773182 ID=Msa0024320-mRNA-1:exon:13259;Parent=Msa0024320-mRNA-1
chr1_1 five_prime_UTR 46771876 46772011 46771876 ID=Msa0024320-mRNA-1:five_prime_utr;Parent=Msa0024320-mRNA-1
chr1_1 CDS 46772012 46772308 46772012 ID=Msa0024320-mRNA-1:cds;Parent=Msa0024320-mRNA-1
chr1_1 CDS 46772520 46772573 46772520 ID=Msa0024320-mRNA-1:cds;Parent=Msa0024320-mRNA-1
chr1_1 CDS 46773182 46773409 46773182 ID=Msa0024320-mRNA-1:cds;Parent=Msa0024320-mRNA-1
chr1_1 three_prime_UTR 46773410 46773683 46773410 ID=Msa0024320-mRNA-1:three_prime_utr;Parent=Msa0024320-mRNA-1
Gene Sequence

>Msa0024320

ATGGCAATGTTAAGTGGAAGTATAAGGCAGCAGAGTGTGTGCTTGAGTATGCAGCTGAGAGGAACAGGATTGAATTCTCATGTTCCACTGCCTTCTCAGCACTCCCTCATTCATAGTTATCACAACAACAACAACAACCATTCTCTCGTGCTTCATAGCCGCTTCCATCTCACGGTGGCGGCACCCAAAGTTTCCGCGGGAAGCTACAGCCCCACCGACGACGATGGAGTCTCTCTGGGCACCATGAAGCTGCCTGTCAACATAGACCTTCAGAGATTCGATTCCCTGCTCTTTCAGTGGGCAAACAGCCTTTGCCAGGGAGCCAGTCTACCACTTTCCACGCCTCTCAAGGTTGACAAAATACCCGATGGAGCAAGATTAGGGTTTATAGACATTGGGGAAACAGAAGTTCTTGTGTATATTGACTGTTTGGTTTTTAAACCAAATGAAAGTTCTCCTCCAGTTTTCCAAGCGACCAGACATGGGCGCATGAAAGATAAGGTGCCGCCGGGTGAGCCCAGAATCATGAGGAGCCTTATGGAAGCTCTTCAGAAGTCAGTTCAGATTGCCTCATTGTGA

Protein sequence

>Msa0024320

MAMLSGSIRQQSVCLSMQLRGTGLNSHVPLPSQHSLIHSYHNNNNNHSLVLHSRFHLTVAAPKVSAGSYSPTDDDGVSLGTMKLPVNIDLQRFDSLLFQWANSLCQGASLPLSTPLKVDKIPDGARLGFIDIGETEVLVYIDCLVFKPNESSPPVFQATRHGRMKDKVPPGEPRIMRSLMEALQKSVQIASL*