Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0500400 | XP_003603080.1 | 94.692 | 471 | 22 | 3 | 1 | 470 | 1 | 469 | 0.0 | 889 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0500400 | G7J6Y7 | 94.692 | 471 | 22 | 3 | 1 | 470 | 1 | 469 | 0.0 | 889 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0004480 | Msa0500400 | 0.804019 | 2.641286e-49 | -8.615850e-47 |
| Msa0011050 | Msa0500400 | 0.838476 | 2.811158e-57 | -8.615850e-47 |
| Msa0012710 | Msa0500400 | 0.817543 | 3.123121e-52 | -8.615850e-47 |
| Msa0026630 | Msa0500400 | 0.816847 | 4.477851e-52 | -8.615850e-47 |
| Msa0037320 | Msa0500400 | 0.831486 | 1.624174e-55 | -8.615850e-47 |
| Msa0043850 | Msa0500400 | 0.833872 | 4.153844e-56 | -8.615850e-47 |
| Msa0046560 | Msa0500400 | 0.805267 | 1.449791e-49 | -8.615850e-47 |
| Msa0048390 | Msa0500400 | 0.811233 | 7.757086e-51 | -8.615850e-47 |
| Msa0060070 | Msa0500400 | 0.839583 | 1.452752e-57 | -8.615850e-47 |
| Msa0061500 | Msa0500400 | 0.832126 | 1.129570e-55 | -8.615850e-47 |
| Msa0071480 | Msa0500400 | 0.843631 | 1.244112e-58 | -8.615850e-47 |
| Msa0081940 | Msa0500400 | 0.808290 | 3.330659e-50 | -8.615850e-47 |
| Msa0090380 | Msa0500400 | 0.814189 | 1.748272e-51 | -8.615850e-47 |
| Msa0090510 | Msa0500400 | 0.819159 | 1.344632e-52 | -8.615850e-47 |
| Msa0092410 | Msa0500400 | 0.822596 | 2.176778e-53 | -8.615850e-47 |
| Msa0117520 | Msa0500400 | 0.806833 | 6.789170e-50 | -8.615850e-47 |
| Msa0119440 | Msa0500400 | 0.861309 | 1.123477e-63 | -8.615850e-47 |
| Msa0128430 | Msa0500400 | 0.800340 | 1.509110e-48 | -8.615850e-47 |
| Msa0130850 | Msa0500400 | 0.806999 | 6.260697e-50 | -8.615850e-47 |
| Msa0136630 | Msa0500400 | 0.908839 | 1.102365e-81 | -8.615850e-47 |
| Msa0137860 | Msa0500400 | 0.811042 | 8.532390e-51 | -8.615850e-47 |
| Msa0137980 | Msa0500400 | 0.819469 | 1.142907e-52 | -8.615850e-47 |
| Msa0138900 | Msa0500400 | 0.840718 | 7.344932e-58 | -8.615850e-47 |
| Msa0139670 | Msa0500400 | 0.826670 | 2.388457e-54 | -8.615850e-47 |
| Msa0151220 | Msa0500400 | 0.838805 | 2.311573e-57 | -8.615850e-47 |
| Msa0152560 | Msa0500400 | 0.845593 | 3.687725e-59 | -8.615850e-47 |
| Msa0160960 | Msa0500400 | 0.819715 | 1.003856e-52 | -8.615850e-47 |
| Msa0162690 | Msa0500400 | 0.839811 | 1.267275e-57 | -8.615850e-47 |
| Msa0176260 | Msa0500400 | 0.822455 | 2.347470e-53 | -8.615850e-47 |
| Msa0178040 | Msa0500400 | 0.831738 | 1.407850e-55 | -8.615850e-47 |
| Msa0179100 | Msa0500400 | 0.810436 | 1.153856e-50 | -8.615850e-47 |
| Msa0183910 | Msa0500400 | 0.816643 | 4.975614e-52 | -8.615850e-47 |
| Msa0187310 | Msa0500400 | 0.850470 | 1.662821e-60 | -8.615850e-47 |
| Msa0189610 | Msa0500400 | 0.826682 | 2.372804e-54 | -8.615850e-47 |
| Msa0194010 | Msa0500400 | 0.808958 | 2.398087e-50 | -8.615850e-47 |
| Msa0201570 | Msa0500400 | 0.828911 | 6.907530e-55 | -8.615850e-47 |
| Msa0213430 | Msa0500400 | 0.848310 | 6.648106e-60 | -8.615850e-47 |
| Msa0224130 | Msa0500400 | 0.861867 | 7.588001e-64 | -8.615850e-47 |
| Msa0235880 | Msa0500400 | 0.818016 | 2.442623e-52 | -8.615850e-47 |
| Msa0364790 | Msa0500400 | 0.858253 | 9.355651e-63 | -8.615850e-47 |
| Msa0365950 | Msa0500400 | 0.813916 | 2.008802e-51 | -8.615850e-47 |
| Msa0380600 | Msa0500400 | 0.920158 | 1.822109e-87 | -8.615850e-47 |
| Msa0382370 | Msa0500400 | 0.815456 | 9.160975e-52 | -8.615850e-47 |
| Msa0388730 | Msa0500400 | 0.808565 | 2.909845e-50 | -8.615850e-47 |
| Msa0403490 | Msa0500400 | 0.822232 | 2.644629e-53 | -8.615850e-47 |
| Msa0408340 | Msa0500400 | 0.803016 | 4.261935e-49 | -8.615850e-47 |
| Msa0430240 | Msa0500400 | 0.916469 | 1.715730e-85 | -8.615850e-47 |
| Msa0432160 | Msa0500400 | 0.809794 | 1.586977e-50 | -8.615850e-47 |
| Msa0437070 | Msa0500400 | 0.816968 | 4.206240e-52 | -8.615850e-47 |
| Msa0456770 | Msa0500400 | 0.825753 | 3.947000e-54 | -8.615850e-47 |
| Msa0472770 | Msa0500400 | 0.817178 | 3.773319e-52 | -8.615850e-47 |
| Msa0476680 | Msa0500400 | 0.814391 | 1.577583e-51 | -8.615850e-47 |
| Msa0240270 | Msa0500400 | 0.824479 | 7.893344e-54 | -8.615850e-47 |
| Msa0259440 | Msa0500400 | 0.818478 | 1.919309e-52 | -8.615850e-47 |
| Msa0259580 | Msa0500400 | 0.812976 | 3.233595e-51 | -8.615850e-47 |
| Msa0264680 | Msa0500400 | 0.800977 | 1.119054e-48 | -8.615850e-47 |
| Msa0265270 | Msa0500400 | 0.857757 | 1.313288e-62 | -8.615850e-47 |
| Msa0269560 | Msa0500400 | 0.809801 | 1.581049e-50 | -8.615850e-47 |
| Msa0271550 | Msa0500400 | 0.813794 | 2.137365e-51 | -8.615850e-47 |
| Msa0276430 | Msa0500400 | 0.826722 | 2.321624e-54 | -8.615850e-47 |
| Msa0279430 | Msa0500400 | 0.811615 | 6.409069e-51 | -8.615850e-47 |
| Msa0282720 | Msa0500400 | 0.820798 | 5.669269e-53 | -8.615850e-47 |
| Msa0302730 | Msa0500400 | 0.829126 | 6.128340e-55 | -8.615850e-47 |
| Msa0305620 | Msa0500400 | 0.832964 | 6.998325e-56 | -8.615850e-47 |
| Msa0312910 | Msa0500400 | 0.801190 | 1.012249e-48 | -8.615850e-47 |
| Msa0319020 | Msa0500400 | 0.801335 | 9.454034e-49 | -8.615850e-47 |
| Msa0319290 | Msa0500400 | 0.844647 | 6.641444e-59 | -8.615850e-47 |
| Msa0482940 | Msa0500400 | 0.804271 | 2.340859e-49 | -8.615850e-47 |
| Msa0484800 | Msa0500400 | 0.814403 | 1.568069e-51 | -8.615850e-47 |
| Msa0500400 | Msa0521010 | 0.816159 | 6.383887e-52 | -8.615850e-47 |
| Msa0500400 | Msa0534870 | 0.818112 | 2.323025e-52 | -8.615850e-47 |
| Msa0500400 | Msa0545050 | 0.815484 | 9.029476e-52 | -8.615850e-47 |
| Msa0500400 | Msa0582280 | 0.800826 | 1.200943e-48 | -8.615850e-47 |
| Msa0500400 | Msa0583670 | 0.804082 | 2.562377e-49 | -8.615850e-47 |
| Msa0500400 | Msa0600590 | 0.831520 | 1.593205e-55 | -8.615850e-47 |
| Msa0500400 | Msa0615210 | 0.812003 | 5.274071e-51 | -8.615850e-47 |
| Msa0500400 | Msa0616450 | 0.800749 | 1.245323e-48 | -8.615850e-47 |
| Msa0500400 | Msa0631320 | 0.816288 | 5.972999e-52 | -8.615850e-47 |
| Msa0500400 | Msa0638990 | 0.804560 | 2.037660e-49 | -8.615850e-47 |
| Msa0500400 | Msa0641130 | 0.817540 | 3.127991e-52 | -8.615850e-47 |
| Msa0500400 | Msa0649100 | 0.801195 | 1.009483e-48 | -8.615850e-47 |
| Msa0500400 | Msa0658680 | 0.822597 | 2.175915e-53 | -8.615850e-47 |
| Msa0500400 | Msa0698460 | 0.804940 | 1.697340e-49 | -8.615850e-47 |
| Msa0500400 | Msa0709120 | 0.824005 | 1.020004e-53 | -8.615850e-47 |
| Msa0500400 | Msa0724370 | 0.823894 | 1.082992e-53 | -8.615850e-47 |
| Msa0500400 | Msa0735550 | 0.801872 | 7.335859e-49 | -8.615850e-47 |
| Msa0500400 | Msa0743870 | 0.839335 | 1.684781e-57 | -8.615850e-47 |
| Msa0500400 | Msa0748660 | 0.812137 | 4.931883e-51 | -8.615850e-47 |
| Msa0500400 | Msa0758250 | 0.807048 | 6.112638e-50 | -8.615850e-47 |
| Msa0500400 | Msa0764920 | 0.825545 | 4.421462e-54 | -8.615850e-47 |
| Msa0500400 | Msa0769720 | 0.825873 | 3.696875e-54 | -8.615850e-47 |
| Msa0500400 | Msa0771950 | 0.810627 | 1.049237e-50 | -8.615850e-47 |
| Msa0500400 | Msa0775560 | 0.818875 | 1.560029e-52 | -8.615850e-47 |
| Msa0500400 | Msa0787790 | 0.804144 | 2.487489e-49 | -8.615850e-47 |
| Msa0500400 | Msa0789560 | 0.813634 | 2.318109e-51 | -8.615850e-47 |
| Msa0500400 | Msa0812950 | 0.832493 | 9.159490e-56 | -8.615850e-47 |
| Msa0500400 | Msa0823540 | 0.803240 | 3.831622e-49 | -8.615850e-47 |
| Msa0500400 | Msa0844610 | 0.816163 | 6.371677e-52 | -8.615850e-47 |
| Msa0500400 | Msa0853440 | 0.800774 | 1.230755e-48 | -8.615850e-47 |
| Msa0500400 | Msa0862620 | 0.808175 | 3.523699e-50 | -8.615850e-47 |
| Msa0500400 | Msa0863990 | 0.806682 | 7.307277e-50 | -8.615850e-47 |
| Msa0500400 | Msa0865970 | 0.819154 | 1.348187e-52 | -8.615850e-47 |
| Msa0500400 | Msa0866070 | 0.812741 | 3.639912e-51 | -8.615850e-47 |
| Msa0500400 | Msa0921420 | 0.832402 | 9.646288e-56 | -8.615850e-47 |
| Msa0500400 | Msa0945130 | 0.837113 | 6.294556e-57 | -8.615850e-47 |
| Msa0500400 | Msa0968050 | 0.829312 | 5.523026e-55 | -8.615850e-47 |
| Msa0500400 | Msa0994910 | 0.805648 | 1.206020e-49 | -8.615850e-47 |
| Msa0500400 | Msa1040980 | 0.800520 | 1.386589e-48 | -8.615850e-47 |
| Msa0500400 | Msa1043120 | 0.823262 | 1.522856e-53 | -8.615850e-47 |
| Msa0500400 | Msa1062040 | 0.809662 | 1.693378e-50 | -8.615850e-47 |
| Msa0500400 | Msa1063370 | 0.803332 | 3.667107e-49 | -8.615850e-47 |
| Msa0500400 | Msa1089190 | 0.839186 | 1.842299e-57 | -8.615850e-47 |
| Msa0500400 | Msa1107200 | 0.831299 | 1.806053e-55 | -8.615850e-47 |
| Msa0500400 | Msa1108720 | 0.804499 | 2.097986e-49 | -8.615850e-47 |
| Msa0500400 | Msa1109810 | 0.841132 | 5.719322e-58 | -8.615850e-47 |
| Msa0500400 | Msa1123720 | 0.818798 | 1.624177e-52 | -8.615850e-47 |
| Msa0500400 | Msa1127380 | 0.808103 | 3.650646e-50 | -8.615850e-47 |
| Msa0500400 | Msa1150780 | 0.803735 | 3.025136e-49 | -8.615850e-47 |
| Msa0500400 | Msa1156820 | 0.803785 | 2.953538e-49 | -8.615850e-47 |
| Msa0500400 | Msa1171140 | 0.815930 | 7.182477e-52 | -8.615850e-47 |
| Msa0500400 | Msa1183140 | 0.817683 | 2.903585e-52 | -8.615850e-47 |
| Msa0500400 | Msa1184780 | 0.807255 | 5.527830e-50 | -8.615850e-47 |
| Msa0500400 | Msa1208790 | 0.802718 | 4.910987e-49 | -8.615850e-47 |
| Msa0500400 | Msa1208990 | 0.805439 | 1.334400e-49 | -8.615850e-47 |
| Msa0500400 | Msa1209190 | 0.829532 | 4.885125e-55 | -8.615850e-47 |
| Msa0500400 | Msa1209860 | 0.803545 | 3.312322e-49 | -8.615850e-47 |
| Msa0500400 | Msa1212130 | 0.814771 | 1.300330e-51 | -8.615850e-47 |
| Msa0500400 | Msa1214170 | 0.843168 | 1.653600e-58 | -8.615850e-47 |
| Msa0500400 | Msa1218160 | 0.821436 | 4.041635e-53 | -8.615850e-47 |
| Msa0500400 | Msa1219150 | 0.826438 | 2.713514e-54 | -8.615850e-47 |
| Msa0500400 | Msa1220880 | 0.821094 | 4.846792e-53 | -8.615850e-47 |
| Msa0500400 | Msa1221330 | 0.804210 | 2.409476e-49 | -8.615850e-47 |
| Msa0500400 | Msa1225100 | 0.807876 | 4.079948e-50 | -8.615850e-47 |
| Msa0500400 | Msa1225580 | 0.810745 | 9.891715e-51 | -8.615850e-47 |
| Msa0500400 | Msa1229480 | 0.808611 | 2.844269e-50 | -8.615850e-47 |
| Msa0500400 | Msa1234620 | 0.846786 | 1.745381e-59 | -8.615850e-47 |
| Msa0500400 | Msa1236440 | 0.807879 | 4.073894e-50 | -8.615850e-47 |
| Msa0500400 | Msa1258980 | 0.801846 | 7.426160e-49 | -8.615850e-47 |
| Msa0500400 | Msa1259860 | 0.822675 | 2.086600e-53 | -8.615850e-47 |
| Msa0500400 | Msa1260060 | 0.823888 | 1.086833e-53 | -8.615850e-47 |
| Msa0500400 | Msa1260680 | 0.856668 | 2.753662e-62 | -8.615850e-47 |
| Msa0500400 | Msa1266170 | 0.818453 | 1.944460e-52 | -8.615850e-47 |
| Msa0500400 | Msa1280150 | 0.809183 | 2.145597e-50 | -8.615850e-47 |
| Msa0500400 | Msa1280170 | 0.842266 | 2.872343e-58 | -8.615850e-47 |
| Msa0500400 | Msa1284090 | 0.808988 | 2.363036e-50 | -8.615850e-47 |
| Msa0500400 | Msa1285200 | 0.849907 | 2.392387e-60 | -8.615850e-47 |
| Msa0500400 | Msa1309760 | 0.806844 | 6.752226e-50 | -8.615850e-47 |
| Msa0500400 | Msa1329870 | 0.809697 | 1.665017e-50 | -8.615850e-47 |
| Msa0500400 | Msa1330550 | 0.800906 | 1.156960e-48 | -8.615850e-47 |
| Msa0500400 | Msa1332050 | 0.822804 | 1.946798e-53 | -8.615850e-47 |
| Msa0500400 | Msa1335230 | 0.801081 | 1.065333e-48 | -8.615850e-47 |
| Msa0500400 | Msa1336040 | 0.801029 | 1.091686e-48 | -8.615850e-47 |
| Msa0500400 | Msa1355510 | 0.802383 | 5.758371e-49 | -8.615850e-47 |
| Msa0500400 | Msa1360020 | 0.841326 | 5.086487e-58 | -8.615850e-47 |
| Msa0500400 | Msa1364080 | 0.850212 | 1.965422e-60 | -8.615850e-47 |
| Msa0500400 | Msa1369920 | -0.812782 | 3.565576e-51 | -8.615850e-47 |
| Msa0500400 | Msa1370590 | 0.801082 | 1.064838e-48 | -8.615850e-47 |
| Msa0500400 | Msa1384100 | 0.804283 | 2.326764e-49 | -8.615850e-47 |
| Msa0500400 | Msa1386890 | 0.818178 | 2.244867e-52 | -8.615850e-47 |
| Msa0500400 | Msa1400930 | 0.801461 | 8.908697e-49 | -8.615850e-47 |
| Msa0500400 | Msa1405220 | 0.808090 | 3.673172e-50 | -8.615850e-47 |
| Msa0500400 | Msa1411410 | 0.840319 | 9.342580e-58 | -8.615850e-47 |
| Msa0500400 | Msa1421900 | 0.801134 | 1.038993e-48 | -8.615850e-47 |
| Msa0500400 | Msa1423540 | 0.807106 | 5.944270e-50 | -8.615850e-47 |
| Msa0500400 | Msa1430130 | 0.833089 | 6.516794e-56 | -8.615850e-47 |
| Msa0500400 | Msa1430550 | 0.806729 | 7.140627e-50 | -8.615850e-47 |
| Msa0500400 | Msa1433410 | 0.818366 | 2.035126e-52 | -8.615850e-47 |
| Msa0500400 | Msa1437730 | 0.803706 | 3.067925e-49 | -8.615850e-47 |
| Msa0500400 | Msa1443620 | 0.821928 | 3.110440e-53 | -8.615850e-47 |
| Msa0500400 | Msa1444120 | 0.803250 | 3.812394e-49 | -8.615850e-47 |
| Msa0500400 | Msa1457160 | 0.810619 | 1.053537e-50 | -8.615850e-47 |
| Msa0500400 | Msa1460750 | 0.831968 | 1.235362e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0500400 | MtrunA17_Chr3g0134171 | 94.692 | 471 | 22 | 3 | 1 | 470 | 1 | 469 | 0.0 | 889 |
| Msa0500400 | MtrunA17_Chr1g0153131 | 59.660 | 471 | 154 | 11 | 3 | 470 | 7 | 444 | 7.58e-177 | 503 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0500400 | AT4G06536.1 | 51.149 | 174 | 57 | 3 | 306 | 464 | 3 | 163 | 2.07e-53 | 177 |
| Msa0500400 | AT4G06534.1 | 32.680 | 306 | 157 | 12 | 25 | 309 | 26 | 303 | 5.70e-35 | 135 |
Find 114 sgRNAs with CRISPR-Local
Find 160 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGTTTCGCAGTAATGTTTC+TGG | 0.124831 | 3_4:-40719011 | Msa0500400:CDS |
| ATTATGGTATTGGTTAATTT+TGG | 0.149979 | 3_4:-40717442 | Msa0500400:CDS |
| GTGTTTCTCATCTAATAAAA+TGG | 0.166379 | 3_4:+40716990 | None:intergenic |
| TTGATTCTCATTGGCTTAAT+AGG | 0.191314 | 3_4:-40717285 | Msa0500400:CDS |
| GGTGATAAGATGAAGCTTAT+TGG | 0.237777 | 3_4:-40718546 | Msa0500400:CDS |
| CAAATTGTGCCAAGTTGTTT+TGG | 0.251882 | 3_4:-40717126 | Msa0500400:three_prime_UTR |
| AATGGTTCTGTTTATCTTGA+TGG | 0.259478 | 3_4:-40718321 | Msa0500400:intron |
| GCTGCTGATGCTATTGAAAA+TGG | 0.279159 | 3_4:-40718942 | Msa0500400:CDS |
| AGTTATTCAAAATAATTCTA+TGG | 0.287566 | 3_4:-40718712 | Msa0500400:CDS |
| GTTGAAGAAATGAAGGTTAA+TGG | 0.290085 | 3_4:-40718462 | Msa0500400:CDS |
| TGGCATGTGATTATGAATTC+TGG | 0.309761 | 3_4:+40719082 | None:intergenic |
| GCTGCACCTGCAGGTGATTA+TGG | 0.313015 | 3_4:-40718837 | Msa0500400:CDS |
| CCGTTACCTGGTCCTGTTGT+AGG | 0.320947 | 3_4:-40718663 | Msa0500400:CDS |
| AGCTGCTAATATAGACATTA+TGG | 0.325126 | 3_4:-40717458 | Msa0500400:CDS |
| TTGTTTGAAATCGTAATAGA+TGG | 0.343448 | 3_4:-40717187 | Msa0500400:CDS |
| CCCATTGTTGTGGCTTCCTT+TGG | 0.343611 | 3_4:+40717255 | None:intergenic |
| GTGATAAGATGAAGCTTATT+GGG | 0.345352 | 3_4:-40718545 | Msa0500400:CDS |
| ACATACTAGTATAAATGTTT+AGG | 0.354004 | 3_4:+40716935 | None:intergenic |
| GAACAACAAATTTGTTCAGC+TGG | 0.355141 | 3_4:-40718983 | Msa0500400:CDS |
| ATAGATTAAAATTAAGACTA+TGG | 0.358611 | 3_4:+40719166 | None:intergenic |
| ATAGGAACTGATAGGGTAAT+TGG | 0.362823 | 3_4:-40717592 | Msa0500400:CDS |
| TCAAAGAAGGTTACACTGTT+AGG | 0.372240 | 3_4:-40718867 | Msa0500400:CDS |
| GGTGTTCTTTGAGCATTTGC+TGG | 0.373884 | 3_4:+40717397 | None:intergenic |
| TAATATAGACATTATGGTAT+TGG | 0.375543 | 3_4:-40717452 | Msa0500400:CDS |
| CTGGATTGAAAATCCATCTA+TGG | 0.380170 | 3_4:-40718964 | Msa0500400:CDS |
| TACCTTGTTCTAATTGATGA+TGG | 0.384921 | 3_4:+40719054 | None:intergenic |
| CATCTGAAGCAGAGATTAGT+TGG | 0.398628 | 3_4:-40718806 | Msa0500400:CDS |
| CAGAGTGGATAGGAACTGAT+AGG | 0.399932 | 3_4:-40717600 | Msa0500400:CDS |
| GAATTGAAAGAGTTTGGGTT+TGG | 0.400073 | 3_4:+40719292 | None:intergenic |
| GCTTATTGGGAAAGGGAATT+CGG | 0.400140 | 3_4:-40718532 | Msa0500400:CDS |
| TGGGTAGGATTGATTCTCAT+TGG | 0.405419 | 3_4:-40717294 | Msa0500400:CDS |
| AAGAAAACCTTCTTCTGCCT+TGG | 0.410505 | 3_4:+40717556 | None:intergenic |
| TTTCAAAATATGTTTCTTGT+GGG | 0.419914 | 3_4:+40718628 | None:intergenic |
| TGTTTCTCATCTAATAAAAT+GGG | 0.423680 | 3_4:+40716991 | None:intergenic |
| ATAGCATCAGCAGCCATAGA+TGG | 0.437052 | 3_4:+40718951 | None:intergenic |
| GAAAGGGAATTCGGAGGCAT+TGG | 0.443470 | 3_4:-40718523 | Msa0500400:CDS |
| CCAAAGGAAGCCACAACAAT+GGG | 0.444127 | 3_4:-40717255 | Msa0500400:CDS |
| AAAGTTCCTGGGAGTTATCC+TGG | 0.448473 | 3_4:-40718363 | Msa0500400:CDS |
| GGGAGTTATCCTGGTAGCAT+TGG | 0.450226 | 3_4:-40718354 | Msa0500400:CDS |
| ACTGATAGGGTAATTGGTTG+TGG | 0.452337 | 3_4:-40717586 | Msa0500400:CDS |
| CCAGGAACTTTCAAAACAAC+AGG | 0.459646 | 3_4:+40718375 | None:intergenic |
| AAAACACAGTTTCCTACAAC+AGG | 0.466548 | 3_4:+40718651 | None:intergenic |
| ATTTCAAAATATGTTTCTTG+TGG | 0.471502 | 3_4:+40718627 | None:intergenic |
| CTGGTTCAACGGAATTTCTA+CGG | 0.472523 | 3_4:+40719120 | None:intergenic |
| TCGTTGGGTTTGACAATTGG+TGG | 0.478549 | 3_4:-40718399 | Msa0500400:CDS |
| AAGGTTAATGGCAGAGAGAA+TGG | 0.486017 | 3_4:-40718450 | Msa0500400:CDS |
| AGAACAGCTTTGCCGTTACC+TGG | 0.487570 | 3_4:-40718675 | Msa0500400:CDS |
| GCTATCATCGTCGTAACCTA+TGG | 0.495429 | 3_4:+40717333 | None:intergenic |
| GAGTGCTAAATTCTTCTGTC+TGG | 0.500649 | 3_4:+40717497 | None:intergenic |
| GGATCATGTGCTGCACCTGC+AGG | 0.500904 | 3_4:-40718846 | Msa0500400:CDS |
| GGTGATACAAGGCATGGATT+TGG | 0.501565 | 3_4:+40717376 | None:intergenic |
| AGATGAAGCTTATTGGGAAA+GGG | 0.502001 | 3_4:-40718539 | Msa0500400:CDS |
| CAGAAAGTTAGATTAAATCC+TGG | 0.504257 | 3_4:-40718753 | Msa0500400:CDS |
| ATTTGATCCAAGGCAGAAGA+AGG | 0.506798 | 3_4:-40717563 | Msa0500400:CDS |
| TAGCAAAGAATTATTCTCCA+TGG | 0.508073 | 3_4:-40717314 | Msa0500400:CDS |
| AAATATTGTTCCCATTGTTG+TGG | 0.510766 | 3_4:+40717245 | None:intergenic |
| AAATTCATCGCCACGCGAAG+AGG | 0.511644 | 3_4:+40718593 | None:intergenic |
| TCTATATTAGCAGCTAATGT+TGG | 0.513484 | 3_4:+40717466 | None:intergenic |
| GTAAGTTCTCCTGCTGCCAT+AGG | 0.513610 | 3_4:-40717349 | Msa0500400:CDS |
| TATGAGGAGGATGGTGGGCG+TGG | 0.518185 | 3_4:+40719358 | None:intergenic |
| AAGATGAAGCTTATTGGGAA+AGG | 0.523093 | 3_4:-40718540 | Msa0500400:CDS |
| GAATAGTGTTGAAGAAATGA+AGG | 0.524243 | 3_4:-40718469 | Msa0500400:CDS |
| GAAAGCTATGATGTTGTACT+TGG | 0.528509 | 3_4:+40717151 | None:intergenic |
| ATCTGAAGCAGAGATTAGTT+GGG | 0.538447 | 3_4:-40718805 | Msa0500400:CDS |
| ACCTTCTTTGATGATGATGA+TGG | 0.540282 | 3_4:+40718879 | None:intergenic |
| TCGTCGTAACCTATGGCAGC+AGG | 0.540303 | 3_4:+40717340 | None:intergenic |
| GCGTGGCGATGAATTTGAAT+CGG | 0.540540 | 3_4:-40718586 | Msa0500400:CDS |
| TCACAATTTAACAAAAGATG+TGG | 0.541747 | 3_4:-40719232 | Msa0500400:exon |
| GCCATCATCATCATCAAAGA+AGG | 0.543452 | 3_4:-40718880 | Msa0500400:CDS |
| GTGTATGTTTACAGTTTCAA+AGG | 0.544739 | 3_4:-40717026 | Msa0500400:three_prime_UTR |
| AAGAATTATTCTCCATGGGT+AGG | 0.547654 | 3_4:-40717309 | Msa0500400:CDS |
| TCTCTTCCATAATCACCTGC+AGG | 0.552219 | 3_4:+40718831 | None:intergenic |
| GCAGCTAATGTTGGATACAA+TGG | 0.556127 | 3_4:+40717475 | None:intergenic |
| TTGGTTGTGGATTTGATCCA+AGG | 0.557657 | 3_4:-40717573 | Msa0500400:CDS |
| GAAAGTTATGAGGAGGATGG+TGG | 0.557680 | 3_4:+40719352 | None:intergenic |
| TTAATGGCAGAGAGAATGGT+GGG | 0.559463 | 3_4:-40718446 | Msa0500400:CDS |
| GAGTTAAAACCAATGCTACC+AGG | 0.563405 | 3_4:+40718345 | None:intergenic |
| AACTTACAAGTGGTGATACA+AGG | 0.564357 | 3_4:+40717365 | None:intergenic |
| TCGGTAAGAAAGAGTGTGGA+AGG | 0.566648 | 3_4:-40718567 | Msa0500400:CDS |
| TGTACTATTTGTACAAGCAA+AGG | 0.569630 | 3_4:+40717084 | None:intergenic |
| AGACTCTTCATCAAAATCCA+TGG | 0.570947 | 3_4:+40717219 | None:intergenic |
| TCTGAGAAGGCAGAGTGGAT+AGG | 0.571845 | 3_4:-40717610 | Msa0500400:CDS |
| AAAGTTATGAGGAGGATGGT+GGG | 0.577410 | 3_4:+40719353 | None:intergenic |
| TCTAATTGATGATGGACACT+TGG | 0.579397 | 3_4:+40719062 | None:intergenic |
| CAGTTTCCTACAACAGGACC+AGG | 0.580501 | 3_4:+40718657 | None:intergenic |
| TGGGAACAATATTTCAACCA+TGG | 0.581189 | 3_4:-40717236 | Msa0500400:CDS |
| CACAATTTAACAAAAGATGT+GGG | 0.584630 | 3_4:-40719231 | Msa0500400:exon |
| AGCAAAGAATTATTCTCCAT+GGG | 0.584762 | 3_4:-40717313 | Msa0500400:CDS |
| TGAATCGGTAAGAAAGAGTG+TGG | 0.595163 | 3_4:-40718571 | Msa0500400:CDS |
| ATGAGAATCAATCCTACCCA+TGG | 0.595354 | 3_4:+40717297 | None:intergenic |
| ATGCCAGAACCAAAACAACT+TGG | 0.596162 | 3_4:+40717117 | None:intergenic |
| GCATTGGTTCATGTTACAAG+TGG | 0.596254 | 3_4:-40718507 | Msa0500400:CDS |
| TGAGAAAGTTATGAGGAGGA+TGG | 0.604005 | 3_4:+40719349 | None:intergenic |
| ACTTGTATTCGAATCTGAGA+AGG | 0.604378 | 3_4:-40717623 | Msa0500400:CDS |
| ACCAAAGGAAGCCACAACAA+TGG | 0.609473 | 3_4:-40717256 | Msa0500400:CDS |
| ACGATATTGTCCTCTTCGCG+TGG | 0.610683 | 3_4:-40718603 | Msa0500400:CDS |
| AGAGTGGATAGGAACTGATA+GGG | 0.611827 | 3_4:-40717599 | Msa0500400:CDS |
| AAAATGAGAAAGTTATGAGG+AGG | 0.613188 | 3_4:+40719345 | None:intergenic |
| CTGATGCTATTGAAAATGGA+TGG | 0.614301 | 3_4:-40718938 | Msa0500400:CDS |
| CATTGGTTCATGTTACAAGT+GGG | 0.614555 | 3_4:-40718506 | Msa0500400:CDS |
| CTTAATAGGACTACAACCAA+AGG | 0.619022 | 3_4:-40717271 | Msa0500400:CDS |
| GCAGTTATAGCATCCACCGT+TGG | 0.622512 | 3_4:-40719200 | Msa0500400:CDS |
| CCTACAACAGGACCAGGTAA+CGG | 0.635042 | 3_4:+40718663 | None:intergenic |
| GTTAATGGCAGAGAGAATGG+TGG | 0.637402 | 3_4:-40718447 | Msa0500400:CDS |
| ATGCTACCAGGATAACTCCC+AGG | 0.638101 | 3_4:+40718357 | None:intergenic |
| ACTATTTGTACAAGCAAAGG+AGG | 0.638539 | 3_4:+40717087 | None:intergenic |
| ACAAGTGGTGATACAAGGCA+TGG | 0.642676 | 3_4:+40717370 | None:intergenic |
| ATTAGTTGGGAAGTTTCACG+TGG | 0.655561 | 3_4:-40718792 | Msa0500400:CDS |
| TATGGTTGAAACGCATCCAA+CGG | 0.657083 | 3_4:+40719184 | None:intergenic |
| GGTTGAAACGCATCCAACGG+TGG | 0.657592 | 3_4:+40719187 | None:intergenic |
| GTCCATCATCAATTAGAACA+AGG | 0.661327 | 3_4:-40719056 | Msa0500400:CDS |
| TATTGGGAAAGGGAATTCGG+AGG | 0.666017 | 3_4:-40718529 | Msa0500400:CDS |
| TCGAATCTGAGAAGGCAGAG+TGG | 0.699575 | 3_4:-40717615 | Msa0500400:CDS |
| GCAGCAGGAGAACTTACAAG+TGG | 0.699695 | 3_4:+40717355 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAGATTAAAATTAAGACTA+TGG | + | chr3_4:40717111-40717130 | None:intergenic | 15.0% |
| !! | AGTTATTCAAAATAATTCTA+TGG | - | chr3_4:40717562-40717581 | Msa0500400:CDS | 15.0% |
| !!! | CTTATTTTCAAAAATTCTTT+AGG | - | chr3_4:40718187-40718206 | Msa0500400:intron | 15.0% |
| !!! | TTTTTGAATTGAAAGAGTTT+GGG | + | chr3_4:40716990-40717009 | None:intergenic | 20.0% |
| !! | TTTCAAAATATGTTTCTTGT+GGG | + | chr3_4:40717649-40717668 | None:intergenic | 20.0% |
| !! | ATTTCAAAATATGTTTCTTG+TGG | + | chr3_4:40717650-40717669 | None:intergenic | 20.0% |
| !! | AGAACTTATAAGTATAGTAT+AGG | - | chr3_4:40718114-40718133 | Msa0500400:intron | 20.0% |
| !! | AAAAATATTGAAATGACCTT+AGG | + | chr3_4:40718271-40718290 | None:intergenic | 20.0% |
| !!! | TAAGGTCATTTCAATATTTT+TGG | - | chr3_4:40718270-40718289 | Msa0500400:intron | 20.0% |
| !! | TAATATAGACATTATGGTAT+TGG | - | chr3_4:40718822-40718841 | Msa0500400:CDS | 20.0% |
| !!! | ATTATGGTATTGGTTAATTT+TGG | - | chr3_4:40718832-40718851 | Msa0500400:CDS | 20.0% |
| !! | TGTTTCTCATCTAATAAAAT+GGG | + | chr3_4:40719286-40719305 | None:intergenic | 20.0% |
| !! | ACATACTAGTATAAATGTTT+AGG | + | chr3_4:40719342-40719361 | None:intergenic | 20.0% |
| ! | GAAAAAATGAGAAAGTTATG+AGG | + | chr3_4:40716935-40716954 | None:intergenic | 25.0% |
| !! | GTTTTTGAATTGAAAGAGTT+TGG | + | chr3_4:40716991-40717010 | None:intergenic | 25.0% |
| ! | TCACAATTTAACAAAAGATG+TGG | - | chr3_4:40717042-40717061 | Msa0500400:three_prime_UTR | 25.0% |
| ! | CACAATTTAACAAAAGATGT+GGG | - | chr3_4:40717043-40717062 | Msa0500400:three_prime_UTR | 25.0% |
| !!! | TAATTTTAATCTATCGTCGT+TGG | - | chr3_4:40717117-40717136 | Msa0500400:three_prime_UTR | 25.0% |
| !! | TGATTAGATTTTCTTAATCC+AGG | + | chr3_4:40717542-40717561 | None:intergenic | 25.0% |
| ! | CTTGAAAAACAATAAACTCA+AGG | + | chr3_4:40717997-40718016 | None:intergenic | 25.0% |
| ! | ATGTCATAACTAATAACATG+AGG | + | chr3_4:40718147-40718166 | None:intergenic | 25.0% |
| !! | TTGTTTGAAATCGTAATAGA+TGG | - | chr3_4:40719087-40719106 | Msa0500400:CDS | 25.0% |
| ! | GTGTTTCTCATCTAATAAAA+TGG | + | chr3_4:40719287-40719306 | None:intergenic | 25.0% |
| AAAATGAGAAAGTTATGAGG+AGG | + | chr3_4:40716932-40716951 | None:intergenic | 30.0% | |
| GAAAAATGAAGGGAAAAAAG+TGG | + | chr3_4:40716961-40716980 | None:intergenic | 30.0% | |
| TACCTTGTTCTAATTGATGA+TGG | + | chr3_4:40717223-40717242 | None:intergenic | 30.0% | |
| CAGAAAGTTAGATTAAATCC+TGG | - | chr3_4:40717521-40717540 | Msa0500400:CDS | 30.0% | |
| GTGATAAGATGAAGCTTATT+GGG | - | chr3_4:40717729-40717748 | Msa0500400:intron | 30.0% | |
| ! | GAATAGTGTTGAAGAAATGA+AGG | - | chr3_4:40717805-40717824 | Msa0500400:intron | 30.0% |
| GTTGAAGAAATGAAGGTTAA+TGG | - | chr3_4:40717812-40717831 | Msa0500400:intron | 30.0% | |
| ! | TGATTCTGTTATGTTTTCGT+TGG | - | chr3_4:40717859-40717878 | Msa0500400:intron | 30.0% |
| ! | GATTCTGTTATGTTTTCGTT+GGG | - | chr3_4:40717860-40717879 | Msa0500400:intron | 30.0% |
| !!! | AGCATTGGTTTTAACTCAAA+TGG | - | chr3_4:40717935-40717954 | Msa0500400:intron | 30.0% |
| ! | AATGGTTCTGTTTATCTTGA+TGG | - | chr3_4:40717953-40717972 | Msa0500400:intron | 30.0% |
| !! | GTTTAGATTTTGTAGTCTTG+TGG | - | chr3_4:40718292-40718311 | Msa0500400:intron | 30.0% |
| ! | GATGATATTTTGTCTTGAAG+TGG | + | chr3_4:40718371-40718390 | None:intergenic | 30.0% |
| TTTACCTACAAAGTACAACA+TGG | - | chr3_4:40718567-40718586 | Msa0500400:CDS | 30.0% | |
| AGATATCTAAGTGTGATACT+TGG | - | chr3_4:40718615-40718634 | Msa0500400:CDS | 30.0% | |
| TCTATATTAGCAGCTAATGT+TGG | + | chr3_4:40718811-40718830 | None:intergenic | 30.0% | |
| AGCTGCTAATATAGACATTA+TGG | - | chr3_4:40718816-40718835 | Msa0500400:CDS | 30.0% | |
| TAGCAAAGAATTATTCTCCA+TGG | - | chr3_4:40718960-40718979 | Msa0500400:CDS | 30.0% | |
| AGCAAAGAATTATTCTCCAT+GGG | - | chr3_4:40718961-40718980 | Msa0500400:CDS | 30.0% | |
| !! | TTGATTCTCATTGGCTTAAT+AGG | - | chr3_4:40718989-40719008 | Msa0500400:CDS | 30.0% |
| AAATATTGTTCCCATTGTTG+TGG | + | chr3_4:40719032-40719051 | None:intergenic | 30.0% | |
| TGTACTATTTGTACAAGCAA+AGG | + | chr3_4:40719193-40719212 | None:intergenic | 30.0% | |
| GTGTATGTTTACAGTTTCAA+AGG | - | chr3_4:40719248-40719267 | Msa0500400:five_prime_UTR | 30.0% | |
| !!! | GTATGTCATAAGTTTTGACT+TGG | - | chr3_4:40719356-40719375 | Msa0500400:five_prime_UTR | 30.0% |
| TGGGTTTGGAGAAAAATGAA+GGG | + | chr3_4:40716971-40716990 | None:intergenic | 35.0% | |
| TTGGGTTTGGAGAAAAATGA+AGG | + | chr3_4:40716972-40716991 | None:intergenic | 35.0% | |
| ! | GAATTGAAAGAGTTTGGGTT+TGG | + | chr3_4:40716985-40717004 | None:intergenic | 35.0% |
| !!! | AGAATTTTCTGCTGGTTCAA+CGG | + | chr3_4:40717168-40717187 | None:intergenic | 35.0% |
| TGGCATGTGATTATGAATTC+TGG | + | chr3_4:40717195-40717214 | None:intergenic | 35.0% | |
| !! | TCTAATTGATGATGGACACT+TGG | + | chr3_4:40717215-40717234 | None:intergenic | 35.0% |
| GTCCATCATCAATTAGAACA+AGG | - | chr3_4:40717218-40717237 | Msa0500400:CDS | 35.0% | |
| ! | GAACAACAAATTTGTTCAGC+TGG | - | chr3_4:40717291-40717310 | Msa0500400:CDS | 35.0% |
| CTGGATTGAAAATCCATCTA+TGG | - | chr3_4:40717310-40717329 | Msa0500400:CDS | 35.0% | |
| CTGATGCTATTGAAAATGGA+TGG | - | chr3_4:40717336-40717355 | Msa0500400:CDS | 35.0% | |
| !! | ACCTTCTTTGATGATGATGA+TGG | + | chr3_4:40717398-40717417 | None:intergenic | 35.0% |
| TCAAAGAAGGTTACACTGTT+AGG | - | chr3_4:40717407-40717426 | Msa0500400:CDS | 35.0% | |
| ! | ATCTGAAGCAGAGATTAGTT+GGG | - | chr3_4:40717469-40717488 | Msa0500400:CDS | 35.0% |
| AAAACACAGTTTCCTACAAC+AGG | + | chr3_4:40717626-40717645 | None:intergenic | 35.0% | |
| GGTGATAAGATGAAGCTTAT+TGG | - | chr3_4:40717728-40717747 | Msa0500400:intron | 35.0% | |
| AAGATGAAGCTTATTGGGAA+AGG | - | chr3_4:40717734-40717753 | Msa0500400:intron | 35.0% | |
| AGATGAAGCTTATTGGGAAA+GGG | - | chr3_4:40717735-40717754 | Msa0500400:intron | 35.0% | |
| !! | CATTGGTTCATGTTACAAGT+GGG | - | chr3_4:40717768-40717787 | Msa0500400:intron | 35.0% |
| ! | TTTTCGTTGGGTTTGACAAT+TGG | - | chr3_4:40717872-40717891 | Msa0500400:intron | 35.0% |
| !!! | CTGTTGTTTTGAAAGTTCCT+GGG | - | chr3_4:40717900-40717919 | Msa0500400:intron | 35.0% |
| ! | CTGTTTATCTTGATGGTAAG+TGG | - | chr3_4:40717960-40717979 | Msa0500400:intron | 35.0% |
| !!! | GATTTTGTAGTCTTGTGGAT+AGG | - | chr3_4:40718297-40718316 | Msa0500400:intron | 35.0% |
| TTGTGAATCTGTCAGTTTCA+CGG | + | chr3_4:40718327-40718346 | None:intergenic | 35.0% | |
| CAAACCATGTTGTACTTTGT+AGG | + | chr3_4:40718574-40718593 | None:intergenic | 35.0% | |
| TAAGTGTGATACTTGGTTAC+AGG | - | chr3_4:40718622-40718641 | Msa0500400:CDS | 35.0% | |
| ACTTGTATTCGAATCTGAGA+AGG | - | chr3_4:40718651-40718670 | Msa0500400:CDS | 35.0% | |
| ATAGGAACTGATAGGGTAAT+TGG | - | chr3_4:40718682-40718701 | Msa0500400:CDS | 35.0% | |
| AACTTACAAGTGGTGATACA+AGG | + | chr3_4:40718912-40718931 | None:intergenic | 35.0% | |
| AAGAATTATTCTCCATGGGT+AGG | - | chr3_4:40718965-40718984 | Msa0500400:CDS | 35.0% | |
| CTTAATAGGACTACAACCAA+AGG | - | chr3_4:40719003-40719022 | Msa0500400:CDS | 35.0% | |
| TGGGAACAATATTTCAACCA+TGG | - | chr3_4:40719038-40719057 | Msa0500400:CDS | 35.0% | |
| AGACTCTTCATCAAAATCCA+TGG | + | chr3_4:40719058-40719077 | None:intergenic | 35.0% | |
| GAAAGCTATGATGTTGTACT+TGG | + | chr3_4:40719126-40719145 | None:intergenic | 35.0% | |
| ! | CAAATTGTGCCAAGTTGTTT+TGG | - | chr3_4:40719148-40719167 | Msa0500400:CDS | 35.0% |
| ACTATTTGTACAAGCAAAGG+AGG | + | chr3_4:40719190-40719209 | None:intergenic | 35.0% | |
| AAAGTTATGAGGAGGATGGT+GGG | + | chr3_4:40716924-40716943 | None:intergenic | 40.0% | |
| TGAGAAAGTTATGAGGAGGA+TGG | + | chr3_4:40716928-40716947 | None:intergenic | 40.0% | |
| TATGGTTGAAACGCATCCAA+CGG | + | chr3_4:40717093-40717112 | None:intergenic | 40.0% | |
| CTGGTTCAACGGAATTTCTA+CGG | + | chr3_4:40717157-40717176 | None:intergenic | 40.0% | |
| !!! | CTGGTTCTAGAATTTTCTGC+TGG | + | chr3_4:40717176-40717195 | None:intergenic | 40.0% |
| CTGTTTCGCAGTAATGTTTC+TGG | - | chr3_4:40717263-40717282 | Msa0500400:CDS | 40.0% | |
| GCTGCTGATGCTATTGAAAA+TGG | - | chr3_4:40717332-40717351 | Msa0500400:CDS | 40.0% | |
| GCCATCATCATCATCAAAGA+AGG | - | chr3_4:40717394-40717413 | Msa0500400:CDS | 40.0% | |
| ! | CATCTGAAGCAGAGATTAGT+TGG | - | chr3_4:40717468-40717487 | Msa0500400:CDS | 40.0% |
| ATTAGTTGGGAAGTTTCACG+TGG | - | chr3_4:40717482-40717501 | Msa0500400:CDS | 40.0% | |
| TGAATCGGTAAGAAAGAGTG+TGG | - | chr3_4:40717703-40717722 | Msa0500400:intron | 40.0% | |
| GCTTATTGGGAAAGGGAATT+CGG | - | chr3_4:40717742-40717761 | Msa0500400:intron | 40.0% | |
| !! | GCATTGGTTCATGTTACAAG+TGG | - | chr3_4:40717767-40717786 | Msa0500400:intron | 40.0% |
| AAGGTTAATGGCAGAGAGAA+TGG | - | chr3_4:40717824-40717843 | Msa0500400:intron | 40.0% | |
| TTAATGGCAGAGAGAATGGT+GGG | - | chr3_4:40717828-40717847 | Msa0500400:intron | 40.0% | |
| CCAGGAACTTTCAAAACAAC+AGG | + | chr3_4:40717902-40717921 | None:intergenic | 40.0% | |
| !!! | CCTGTTGTTTTGAAAGTTCC+TGG | - | chr3_4:40717899-40717918 | Msa0500400:intron | 40.0% |
| GAGTTAAAACCAATGCTACC+AGG | + | chr3_4:40717932-40717951 | None:intergenic | 40.0% | |
| GTAAACTTGTGCGATCGTTT+GGG | - | chr3_4:40718091-40718110 | Msa0500400:intron | 40.0% | |
| GCTTATACAATCAGAGCCTA+AGG | - | chr3_4:40718252-40718271 | Msa0500400:intron | 40.0% | |
| TGTGAATCTGTCAGTTTCAC+GGG | + | chr3_4:40718326-40718345 | None:intergenic | 40.0% | |
| GTCTTGAAGTGGAAGCAAAA+AGG | + | chr3_4:40718360-40718379 | None:intergenic | 40.0% | |
| GGCTGTGAAACATTTCATGT+GGG | + | chr3_4:40718422-40718441 | None:intergenic | 40.0% | |
| !! | TGACCATGTGGTTCTAGTAT+GGG | + | chr3_4:40718443-40718462 | None:intergenic | 40.0% |
| !! | ATGACCATGTGGTTCTAGTA+TGG | + | chr3_4:40718444-40718463 | None:intergenic | 40.0% |
| ATGAGTATGACATGACCATG+TGG | + | chr3_4:40718455-40718474 | None:intergenic | 40.0% | |
| AGAGTGGATAGGAACTGATA+GGG | - | chr3_4:40718675-40718694 | Msa0500400:CDS | 40.0% | |
| ACTGATAGGGTAATTGGTTG+TGG | - | chr3_4:40718688-40718707 | Msa0500400:CDS | 40.0% | |
| TTGGTTGTGGATTTGATCCA+AGG | - | chr3_4:40718701-40718720 | Msa0500400:CDS | 40.0% | |
| ATTTGATCCAAGGCAGAAGA+AGG | - | chr3_4:40718711-40718730 | Msa0500400:CDS | 40.0% | |
| AAGAAAACCTTCTTCTGCCT+TGG | + | chr3_4:40718721-40718740 | None:intergenic | 40.0% | |
| GAGTGCTAAATTCTTCTGTC+TGG | + | chr3_4:40718780-40718799 | None:intergenic | 40.0% | |
| GCAGCTAATGTTGGATACAA+TGG | + | chr3_4:40718802-40718821 | None:intergenic | 40.0% | |
| ATGAGAATCAATCCTACCCA+TGG | + | chr3_4:40718980-40718999 | None:intergenic | 40.0% | |
| ! | TGGGTAGGATTGATTCTCAT+TGG | - | chr3_4:40718980-40718999 | Msa0500400:CDS | 40.0% |
| !! | GGATTTTGATGAAGAGTCTG+AGG | - | chr3_4:40719059-40719078 | Msa0500400:CDS | 40.0% |
| ATGCCAGAACCAAAACAACT+TGG | + | chr3_4:40719160-40719179 | None:intergenic | 40.0% | |
| GAAAGTTATGAGGAGGATGG+TGG | + | chr3_4:40716925-40716944 | None:intergenic | 45.0% | |
| ATAGCATCAGCAGCCATAGA+TGG | + | chr3_4:40717326-40717345 | None:intergenic | 45.0% | |
| TCTCTTCCATAATCACCTGC+AGG | + | chr3_4:40717446-40717465 | None:intergenic | 45.0% | |
| GCGTGGCGATGAATTTGAAT+CGG | - | chr3_4:40717688-40717707 | Msa0500400:intron | 45.0% | |
| ! | TCGGTAAGAAAGAGTGTGGA+AGG | - | chr3_4:40717707-40717726 | Msa0500400:intron | 45.0% |
| TATTGGGAAAGGGAATTCGG+AGG | - | chr3_4:40717745-40717764 | Msa0500400:intron | 45.0% | |
| GTTAATGGCAGAGAGAATGG+TGG | - | chr3_4:40717827-40717846 | Msa0500400:intron | 45.0% | |
| TCGTTGGGTTTGACAATTGG+TGG | - | chr3_4:40717875-40717894 | Msa0500400:intron | 45.0% | |
| AAAGTTCCTGGGAGTTATCC+TGG | - | chr3_4:40717911-40717930 | Msa0500400:intron | 45.0% | |
| CGTAAACTTGTGCGATCGTT+TGG | - | chr3_4:40718090-40718109 | Msa0500400:intron | 45.0% | |
| GTGAATCTGTCAGTTTCACG+GGG | + | chr3_4:40718325-40718344 | None:intergenic | 45.0% | |
| GGGCTGTGAAACATTTCATG+TGG | + | chr3_4:40718423-40718442 | None:intergenic | 45.0% | |
| CAGAGTGGATAGGAACTGAT+AGG | - | chr3_4:40718674-40718693 | Msa0500400:CDS | 45.0% | |
| GGTGTTCTTTGAGCATTTGC+TGG | + | chr3_4:40718880-40718899 | None:intergenic | 45.0% | |
| GGTGATACAAGGCATGGATT+TGG | + | chr3_4:40718901-40718920 | None:intergenic | 45.0% | |
| ACAAGTGGTGATACAAGGCA+TGG | + | chr3_4:40718907-40718926 | None:intergenic | 45.0% | |
| GCTATCATCGTCGTAACCTA+TGG | + | chr3_4:40718944-40718963 | None:intergenic | 45.0% | |
| ACCAAAGGAAGCCACAACAA+TGG | - | chr3_4:40719018-40719037 | Msa0500400:CDS | 45.0% | |
| CCAAAGGAAGCCACAACAAT+GGG | - | chr3_4:40719019-40719038 | Msa0500400:CDS | 45.0% | |
| !!! | GTGCCAAGTTGTTTTGGTTC+TGG | - | chr3_4:40719154-40719173 | Msa0500400:CDS | 45.0% |
| GCAGTTATAGCATCCACCGT+TGG | - | chr3_4:40717074-40717093 | Msa0500400:three_prime_UTR | 50.0% | |
| AGAACAGCTTTGCCGTTACC+TGG | - | chr3_4:40717599-40717618 | Msa0500400:CDS | 50.0% | |
| CCTACAACAGGACCAGGTAA+CGG | + | chr3_4:40717614-40717633 | None:intergenic | 50.0% | |
| CAGTTTCCTACAACAGGACC+AGG | + | chr3_4:40717620-40717639 | None:intergenic | 50.0% | |
| ACGATATTGTCCTCTTCGCG+TGG | - | chr3_4:40717671-40717690 | Msa0500400:intron | 50.0% | |
| AAATTCATCGCCACGCGAAG+AGG | + | chr3_4:40717684-40717703 | None:intergenic | 50.0% | |
| ! | GAAAGGGAATTCGGAGGCAT+TGG | - | chr3_4:40717751-40717770 | Msa0500400:intron | 50.0% |
| ATGCTACCAGGATAACTCCC+AGG | + | chr3_4:40717920-40717939 | None:intergenic | 50.0% | |
| GGGAGTTATCCTGGTAGCAT+TGG | - | chr3_4:40717920-40717939 | Msa0500400:intron | 50.0% | |
| CAGCCCATACTAGAACCACA+TGG | - | chr3_4:40718437-40718456 | Msa0500400:CDS | 50.0% | |
| TCGAATCTGAGAAGGCAGAG+TGG | - | chr3_4:40718659-40718678 | Msa0500400:CDS | 50.0% | |
| TCTGAGAAGGCAGAGTGGAT+AGG | - | chr3_4:40718664-40718683 | Msa0500400:CDS | 50.0% | |
| GCAGCAGGAGAACTTACAAG+TGG | + | chr3_4:40718922-40718941 | None:intergenic | 50.0% | |
| GTAAGTTCTCCTGCTGCCAT+AGG | - | chr3_4:40718925-40718944 | Msa0500400:CDS | 50.0% | |
| CCCATTGTTGTGGCTTCCTT+TGG | + | chr3_4:40719022-40719041 | None:intergenic | 50.0% | |
| GGTTGAAACGCATCCAACGG+TGG | + | chr3_4:40717090-40717109 | None:intergenic | 55.0% | |
| GCTGCACCTGCAGGTGATTA+TGG | - | chr3_4:40717437-40717456 | Msa0500400:CDS | 55.0% | |
| CCGTTACCTGGTCCTGTTGT+AGG | - | chr3_4:40717611-40717630 | Msa0500400:CDS | 55.0% | |
| TCGTCGTAACCTATGGCAGC+AGG | + | chr3_4:40718937-40718956 | None:intergenic | 55.0% | |
| !! | TATGAGGAGGATGGTGGGCG+TGG | + | chr3_4:40716919-40716938 | None:intergenic | 60.0% |
| GGATCATGTGCTGCACCTGC+AGG | - | chr3_4:40717428-40717447 | Msa0500400:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 40716916 | 40719380 | 40716916 | ID=Msa0500400;Name=Msa0500400 |
| chr3_4 | mRNA | 40716916 | 40719380 | 40716916 | ID=Msa0500400-mRNA-1;Parent=Msa0500400;Name=Msa0500400-mRNA-1;_AED=0.00;_eAED=0.00;_QI=143|1|1|1|1|1|2|240|470 |
| chr3_4 | exon | 40716916 | 40717652 | 40716916 | ID=Msa0500400-mRNA-1:exon:8331;Parent=Msa0500400-mRNA-1 |
| chr3_4 | exon | 40718322 | 40719380 | 40718322 | ID=Msa0500400-mRNA-1:exon:8330;Parent=Msa0500400-mRNA-1 |
| chr3_4 | five_prime_UTR | 40719238 | 40719380 | 40719238 | ID=Msa0500400-mRNA-1:five_prime_utr;Parent=Msa0500400-mRNA-1 |
| chr3_4 | CDS | 40718322 | 40719237 | 40718322 | ID=Msa0500400-mRNA-1:cds;Parent=Msa0500400-mRNA-1 |
| chr3_4 | CDS | 40717156 | 40717652 | 40717156 | ID=Msa0500400-mRNA-1:cds;Parent=Msa0500400-mRNA-1 |
| chr3_4 | three_prime_UTR | 40716916 | 40717155 | 40716916 | ID=Msa0500400-mRNA-1:three_prime_utr;Parent=Msa0500400-mRNA-1 |
| Gene Sequence |
| Protein sequence |
