Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1232920 | XP_003627116.1 | 98.588 | 425 | 6 | 0 | 1 | 425 | 1 | 425 | 0.0 | 868 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1232920 | sp|Q9ZVA3|FDL12_ARATH | 26.721 | 247 | 161 | 7 | 41 | 286 | 11 | 238 | 3.03e-13 | 74.7 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0026630 | Msa1232920 | 0.858823 | 6.320613e-63 | -8.615850e-47 |
Msa0037320 | Msa1232920 | 0.804857 | 1.766030e-49 | -8.615850e-47 |
Msa0092410 | Msa1232920 | 0.800384 | 1.478428e-48 | -8.615850e-47 |
Msa0094710 | Msa1232920 | 0.824715 | 6.945623e-54 | -8.615850e-47 |
Msa0641130 | Msa1232920 | 0.835754 | 1.395638e-56 | -8.615850e-47 |
Msa0697570 | Msa1232920 | 0.805147 | 1.536104e-49 | -8.615850e-47 |
Msa0713380 | Msa1232920 | 0.810880 | 9.249148e-51 | -8.615850e-47 |
Msa0734940 | Msa1232920 | 0.817762 | 2.787659e-52 | -8.615850e-47 |
Msa0771950 | Msa1232920 | 0.810510 | 1.112197e-50 | -8.615850e-47 |
Msa0809940 | Msa1232920 | 0.827637 | 1.401498e-54 | -8.615850e-47 |
Msa0828200 | Msa1232920 | 0.823267 | 1.518815e-53 | -8.615850e-47 |
Msa0144530 | Msa1232920 | 0.804120 | 2.516581e-49 | -8.615850e-47 |
Msa0152560 | Msa1232920 | 0.803796 | 2.938380e-49 | -8.615850e-47 |
Msa0172080 | Msa1232920 | 0.822885 | 1.864304e-53 | -8.615850e-47 |
Msa0178040 | Msa1232920 | 0.802676 | 5.011048e-49 | -8.615850e-47 |
Msa0227360 | Msa1232920 | 0.817325 | 3.497276e-52 | -8.615850e-47 |
Msa1231710 | Msa1232920 | 0.817701 | 2.876600e-52 | -8.615850e-47 |
Msa1232920 | Msa1236440 | 0.807874 | 4.084777e-50 | -8.615850e-47 |
Msa1232920 | Msa1272010 | 0.800779 | 1.228114e-48 | -8.615850e-47 |
Msa1232920 | Msa1275510 | 0.900007 | 1.126764e-77 | -8.615850e-47 |
Msa1232920 | Msa1277670 | 0.803837 | 2.880901e-49 | -8.615850e-47 |
Msa1232920 | Msa1305530 | 0.812149 | 4.901186e-51 | -8.615850e-47 |
Msa1232920 | Msa1312440 | 0.837103 | 6.331858e-57 | -8.615850e-47 |
Msa1232920 | Msa1313700 | 0.902264 | 1.158357e-78 | -8.615850e-47 |
Msa1232920 | Msa1369920 | -0.801879 | 7.312226e-49 | -8.615850e-47 |
Msa1232920 | Msa1386890 | 0.805132 | 1.547407e-49 | -8.615850e-47 |
Msa1232920 | Msa1411410 | 0.807162 | 5.783314e-50 | -8.615850e-47 |
Msa0364790 | Msa1232920 | 0.814167 | 1.768136e-51 | -8.615850e-47 |
Msa0371950 | Msa1232920 | 0.817593 | 3.043019e-52 | -8.615850e-47 |
Msa0414140 | Msa1232920 | 0.821243 | 4.478751e-53 | -8.615850e-47 |
Msa0428200 | Msa1232920 | 0.802659 | 5.051082e-49 | -8.615850e-47 |
Msa1011250 | Msa1232920 | 0.826041 | 3.371512e-54 | -8.615850e-47 |
Msa0269560 | Msa1232920 | 0.800706 | 1.270806e-48 | -8.615850e-47 |
Msa0302840 | Msa1232920 | 0.834162 | 3.514701e-56 | -8.615850e-47 |
Msa1160560 | Msa1232920 | 0.804561 | 2.036044e-49 | -8.615850e-47 |
Msa1171140 | Msa1232920 | 0.935560 | 6.999334e-97 | -8.615850e-47 |
Msa1208990 | Msa1232920 | 0.830666 | 2.582634e-55 | -8.615850e-47 |
Msa1221330 | Msa1232920 | 0.812076 | 5.086203e-51 | -8.615850e-47 |
Msa0545050 | Msa1232920 | 0.835454 | 1.662063e-56 | -8.615850e-47 |
Msa0600590 | Msa1232920 | 0.832482 | 9.220403e-56 | -8.615850e-47 |
Msa0862620 | Msa1232920 | 0.814762 | 1.306310e-51 | -8.615850e-47 |
Msa0921420 | Msa1232920 | 0.840158 | 1.029055e-57 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1232920 | MtrunA17_Chr8g0342451 | 98.588 | 425 | 6 | 0 | 1 | 425 | 1 | 425 | 0.0 | 868 |
Msa1232920 | MtrunA17_Chr2g0330161 | 58.295 | 434 | 169 | 4 | 1 | 425 | 1 | 431 | 3.54e-176 | 499 |
Msa1232920 | MtrunA17_Chr8g0366411 | 31.879 | 298 | 160 | 9 | 32 | 325 | 76 | 334 | 2.57e-28 | 116 |
Msa1232920 | MtrunA17_Chr4g0049031 | 28.782 | 271 | 154 | 8 | 33 | 301 | 26 | 259 | 7.48e-27 | 112 |
Msa1232920 | MtrunA17_Chr3g0085901 | 29.259 | 270 | 140 | 8 | 35 | 301 | 11 | 232 | 3.22e-26 | 108 |
Msa1232920 | MtrunA17_Chr7g0221741 | 36.548 | 197 | 101 | 7 | 27 | 216 | 8 | 187 | 1.48e-24 | 103 |
Msa1232920 | MtrunA17_Chr5g0440681 | 32.787 | 183 | 113 | 2 | 34 | 216 | 24 | 196 | 2.98e-24 | 103 |
Msa1232920 | MtrunA17_Chr7g0252201 | 27.143 | 280 | 162 | 8 | 27 | 301 | 8 | 250 | 6.93e-24 | 100 |
Msa1232920 | MtrunA17_Chr4g0023631 | 29.412 | 306 | 179 | 8 | 24 | 327 | 4 | 274 | 5.24e-23 | 100 |
Msa1232920 | MtrunA17_Chr3g0085941 | 27.574 | 272 | 152 | 8 | 34 | 301 | 13 | 243 | 1.37e-22 | 98.2 |
Msa1232920 | MtrunA17_Chr3g0104731 | 29.964 | 277 | 145 | 10 | 34 | 301 | 18 | 254 | 3.06e-22 | 95.9 |
Msa1232920 | MtrunA17_Chr5g0424701 | 25.455 | 275 | 162 | 7 | 35 | 306 | 16 | 250 | 8.58e-22 | 94.4 |
Msa1232920 | MtrunA17_Chr5g0427711 | 28.881 | 277 | 151 | 10 | 35 | 304 | 3 | 240 | 2.07e-21 | 94.7 |
Msa1232920 | MtrunA17_Chr1g0199541 | 29.779 | 272 | 148 | 10 | 34 | 300 | 24 | 257 | 7.07e-21 | 92.0 |
Msa1232920 | MtrunA17_Chr3g0099441 | 28.731 | 268 | 157 | 6 | 34 | 280 | 26 | 280 | 9.65e-21 | 94.4 |
Msa1232920 | MtrunA17_Chr6g0486911 | 29.242 | 277 | 151 | 10 | 35 | 306 | 21 | 257 | 1.03e-20 | 93.6 |
Msa1232920 | MtrunA17_Chr3g0084241 | 28.808 | 302 | 164 | 14 | 35 | 327 | 7 | 266 | 1.13e-20 | 93.2 |
Msa1232920 | MtrunA17_Chr3g0091201 | 34.409 | 186 | 107 | 5 | 38 | 216 | 32 | 209 | 2.24e-20 | 91.7 |
Msa1232920 | MtrunA17_Chr7g0249591 | 27.881 | 269 | 155 | 7 | 35 | 302 | 14 | 244 | 2.25e-20 | 92.8 |
Msa1232920 | MtrunA17_Chr3g0099461 | 27.888 | 251 | 149 | 4 | 34 | 260 | 26 | 268 | 3.13e-20 | 92.4 |
Msa1232920 | MtrunA17_Chr3g0084261 | 27.508 | 309 | 175 | 9 | 34 | 334 | 24 | 291 | 5.08e-20 | 91.3 |
Msa1232920 | MtrunA17_Chr1g0181881 | 34.058 | 138 | 84 | 2 | 35 | 172 | 18 | 148 | 1.45e-19 | 85.5 |
Msa1232920 | MtrunA17_Chr8g0362531 | 29.348 | 276 | 174 | 7 | 11 | 280 | 21 | 281 | 1.55e-19 | 90.1 |
Msa1232920 | MtrunA17_Chr6g0460041 | 28.044 | 271 | 151 | 7 | 34 | 301 | 39 | 268 | 2.36e-19 | 88.2 |
Msa1232920 | MtrunA17_Chr4g0049041 | 31.746 | 189 | 119 | 4 | 34 | 216 | 23 | 207 | 2.88e-19 | 89.4 |
Msa1232920 | MtrunA17_Chr6g0457641 | 27.798 | 277 | 144 | 9 | 34 | 301 | 50 | 279 | 5.84e-19 | 87.8 |
Msa1232920 | MtrunA17_Chr4g0011401 | 31.250 | 192 | 115 | 6 | 33 | 216 | 143 | 325 | 1.21e-18 | 88.2 |
Msa1232920 | MtrunA17_Chr3g0085961 | 25.902 | 305 | 190 | 10 | 35 | 328 | 14 | 293 | 1.45e-18 | 87.0 |
Msa1232920 | MtrunA17_Chr4g0011331 | 29.412 | 289 | 146 | 12 | 35 | 316 | 153 | 390 | 2.00e-18 | 87.0 |
Msa1232920 | MtrunA17_Chr3g0082451 | 30.769 | 273 | 141 | 12 | 34 | 301 | 9 | 238 | 4.71e-18 | 85.5 |
Msa1232920 | MtrunA17_Chr6g0488371 | 34.783 | 138 | 87 | 2 | 36 | 172 | 11 | 146 | 5.86e-18 | 82.4 |
Msa1232920 | MtrunA17_Chr3g0136291 | 29.902 | 204 | 119 | 8 | 36 | 232 | 14 | 200 | 6.56e-18 | 84.3 |
Msa1232920 | MtrunA17_Chr3g0104721 | 28.159 | 277 | 153 | 10 | 34 | 301 | 27 | 266 | 6.73e-18 | 84.0 |
Msa1232920 | MtrunA17_Chr4g0049111 | 29.717 | 212 | 113 | 6 | 35 | 243 | 42 | 220 | 8.96e-18 | 85.5 |
Msa1232920 | MtrunA17_Chr3g0082431 | 32.579 | 221 | 111 | 8 | 34 | 252 | 9 | 193 | 9.63e-18 | 84.3 |
Msa1232920 | MtrunA17_Chr7g0220351 | 32.161 | 199 | 109 | 6 | 32 | 216 | 144 | 330 | 1.22e-17 | 85.1 |
Msa1232920 | MtrunA17_Chr4g0023731 | 55.072 | 69 | 31 | 0 | 37 | 105 | 21 | 89 | 1.56e-17 | 80.9 |
Msa1232920 | MtrunA17_Chr4g0049071 | 27.442 | 215 | 140 | 5 | 11 | 216 | 25 | 232 | 1.83e-17 | 84.0 |
Msa1232920 | MtrunA17_Chr3g0078681 | 25.954 | 262 | 163 | 6 | 35 | 296 | 24 | 254 | 1.91e-17 | 83.2 |
Msa1232920 | MtrunA17_Chr3g0132661 | 29.577 | 213 | 134 | 5 | 32 | 236 | 22 | 226 | 2.40e-17 | 83.6 |
Msa1232920 | MtrunA17_Chr3g0091211 | 36.441 | 118 | 66 | 4 | 32 | 143 | 7 | 121 | 2.48e-17 | 81.3 |
Msa1232920 | MtrunA17_Chr6g0488401 | 26.872 | 227 | 137 | 4 | 36 | 262 | 10 | 207 | 2.63e-17 | 83.2 |
Msa1232920 | MtrunA17_Chr6g0486921 | 26.471 | 272 | 160 | 9 | 35 | 301 | 18 | 254 | 2.93e-17 | 83.6 |
Msa1232920 | MtrunA17_Chr6g0452031 | 32.692 | 208 | 119 | 7 | 23 | 212 | 3 | 207 | 3.55e-17 | 82.0 |
Msa1232920 | MtrunA17_Chr4g0049121 | 36.134 | 119 | 70 | 3 | 34 | 149 | 30 | 145 | 3.91e-17 | 83.6 |
Msa1232920 | MtrunA17_Chr3g0139601 | 36.471 | 170 | 94 | 6 | 30 | 195 | 7 | 166 | 4.64e-17 | 83.2 |
Msa1232920 | MtrunA17_Chr3g0078891 | 24.933 | 373 | 241 | 10 | 35 | 399 | 10 | 351 | 4.67e-17 | 82.8 |
Msa1232920 | MtrunA17_Chr3g0077781 | 27.778 | 252 | 135 | 9 | 35 | 280 | 16 | 226 | 5.92e-17 | 82.0 |
Msa1232920 | MtrunA17_Chr3g0087471 | 33.913 | 115 | 75 | 1 | 31 | 145 | 21 | 134 | 6.65e-17 | 77.0 |
Msa1232920 | MtrunA17_Chr3g0091161 | 33.553 | 152 | 90 | 5 | 34 | 183 | 13 | 155 | 7.90e-17 | 81.6 |
Msa1232920 | MtrunA17_Chr3g0078731 | 25.954 | 262 | 163 | 6 | 35 | 296 | 10 | 240 | 8.97e-17 | 81.6 |
Msa1232920 | MtrunA17_Chr6g0457681 | 27.305 | 282 | 144 | 9 | 36 | 301 | 55 | 291 | 9.05e-17 | 82.0 |
Msa1232920 | MtrunA17_Chr6g0460051 | 38.679 | 106 | 63 | 2 | 35 | 139 | 51 | 155 | 1.30e-16 | 77.0 |
Msa1232920 | MtrunA17_Chr5g0424761 | 30.045 | 223 | 116 | 6 | 35 | 255 | 17 | 201 | 1.36e-16 | 80.9 |
Msa1232920 | MtrunA17_Chr7g0221701 | 32.530 | 166 | 96 | 6 | 58 | 216 | 4 | 160 | 1.41e-16 | 80.1 |
Msa1232920 | MtrunA17_Chr4g0005311 | 33.571 | 140 | 84 | 3 | 34 | 172 | 24 | 155 | 1.55e-16 | 81.3 |
Msa1232920 | MtrunA17_Chr3g0084251 | 32.692 | 156 | 97 | 4 | 18 | 172 | 8 | 156 | 1.76e-16 | 81.6 |
Msa1232920 | MtrunA17_Chr3g0078191 | 33.824 | 136 | 81 | 3 | 38 | 172 | 50 | 177 | 1.80e-16 | 80.9 |
Msa1232920 | MtrunA17_Chr2g0325081 | 27.491 | 291 | 164 | 8 | 35 | 295 | 13 | 286 | 2.61e-16 | 80.1 |
Msa1232920 | MtrunA17_Chr8g0364381 | 38.182 | 110 | 66 | 1 | 35 | 144 | 67 | 174 | 2.83e-16 | 80.5 |
Msa1232920 | MtrunA17_Chr5g0419311 | 31.188 | 202 | 114 | 6 | 35 | 225 | 29 | 216 | 3.06e-16 | 79.3 |
Msa1232920 | MtrunA17_Chr7g0259181 | 32.738 | 168 | 102 | 5 | 30 | 194 | 22 | 181 | 3.09e-16 | 80.5 |
Msa1232920 | MtrunA17_Chr5g0419301 | 30.732 | 205 | 117 | 6 | 35 | 228 | 29 | 219 | 4.07e-16 | 80.1 |
Msa1232920 | MtrunA17_Chr3g0086141 | 33.880 | 183 | 100 | 8 | 36 | 206 | 3 | 176 | 7.34e-16 | 76.3 |
Msa1232920 | MtrunA17_Chr3g0100081 | 27.431 | 288 | 159 | 12 | 36 | 301 | 25 | 284 | 7.83e-16 | 78.6 |
Msa1232920 | MtrunA17_Chr4g0049131 | 34.400 | 125 | 75 | 3 | 35 | 157 | 6 | 125 | 1.25e-15 | 73.6 |
Msa1232920 | MtrunA17_Chr6g0460081 | 26.667 | 270 | 156 | 8 | 34 | 301 | 32 | 261 | 2.39e-15 | 77.4 |
Msa1232920 | MtrunA17_Chr3g0077791 | 32.258 | 124 | 83 | 1 | 31 | 154 | 12 | 134 | 3.05e-15 | 76.3 |
Msa1232920 | MtrunA17_Chr3g0085951 | 26.132 | 287 | 159 | 9 | 35 | 313 | 2 | 243 | 6.52e-15 | 76.3 |
Msa1232920 | MtrunA17_Chr7g0236151 | 31.098 | 164 | 104 | 3 | 35 | 195 | 8 | 165 | 8.53e-15 | 75.1 |
Msa1232920 | MtrunA17_Chr7g0236191 | 31.098 | 164 | 104 | 3 | 35 | 195 | 8 | 165 | 8.53e-15 | 75.1 |
Msa1232920 | MtrunA17_Chr3g0086041 | 32.168 | 143 | 92 | 3 | 32 | 172 | 22 | 161 | 1.12e-14 | 75.5 |
Msa1232920 | MtrunA17_Chr7g0236101 | 31.655 | 139 | 89 | 2 | 35 | 173 | 8 | 140 | 1.81e-14 | 71.2 |
Msa1232920 | MtrunA17_Chr4g0058061 | 28.421 | 190 | 120 | 6 | 33 | 216 | 155 | 334 | 2.46e-14 | 74.7 |
Msa1232920 | MtrunA17_Chr1g0188701 | 23.938 | 259 | 164 | 9 | 35 | 277 | 3 | 244 | 2.88e-14 | 72.8 |
Msa1232920 | MtrunA17_Chr1g0166251 | 29.798 | 198 | 124 | 4 | 36 | 230 | 11 | 196 | 3.18e-14 | 73.9 |
Msa1232920 | MtrunA17_Chr7g0246351 | 29.148 | 223 | 131 | 8 | 35 | 246 | 5 | 211 | 6.38e-14 | 73.2 |
Msa1232920 | MtrunA17_Chr1g0164901 | 33.486 | 218 | 118 | 8 | 36 | 234 | 9 | 218 | 6.49e-14 | 72.8 |
Msa1232920 | MtrunA17_Chr7g0227851 | 29.834 | 181 | 122 | 4 | 36 | 212 | 11 | 190 | 9.40e-14 | 72.4 |
Msa1232920 | MtrunA17_Chr4g0048151 | 26.754 | 228 | 137 | 7 | 3 | 216 | 2 | 213 | 1.01e-13 | 72.8 |
Msa1232920 | MtrunA17_Chr7g0236211 | 33.333 | 141 | 87 | 4 | 35 | 172 | 11 | 147 | 1.54e-13 | 71.6 |
Msa1232920 | MtrunA17_Chr7g0273871 | 31.884 | 138 | 88 | 2 | 36 | 172 | 13 | 145 | 1.55e-13 | 71.6 |
Msa1232920 | MtrunA17_Chr3g0137681 | 29.108 | 213 | 132 | 6 | 35 | 232 | 9 | 217 | 2.87e-13 | 70.9 |
Msa1232920 | MtrunA17_Chr3g0093361 | 29.452 | 146 | 97 | 2 | 30 | 173 | 37 | 178 | 2.93e-13 | 70.9 |
Msa1232920 | MtrunA17_Chr4g0027231 | 31.325 | 249 | 122 | 10 | 26 | 227 | 91 | 337 | 3.61e-13 | 71.2 |
Msa1232920 | MtrunA17_Chr4g0027471 | 30.986 | 213 | 110 | 6 | 29 | 205 | 3 | 214 | 3.80e-13 | 70.9 |
Msa1232920 | MtrunA17_Chr3g0091171 | 30.464 | 151 | 93 | 4 | 36 | 181 | 5 | 148 | 3.80e-13 | 70.5 |
Msa1232920 | MtrunA17_Chr4g0011321 | 29.474 | 190 | 93 | 8 | 35 | 216 | 29 | 185 | 3.97e-13 | 69.7 |
Msa1232920 | MtrunA17_Chr7g0236221 | 35.345 | 116 | 65 | 3 | 35 | 146 | 8 | 117 | 4.43e-13 | 66.2 |
Msa1232920 | MtrunA17_Chr7g0227821 | 31.818 | 110 | 72 | 1 | 36 | 145 | 11 | 117 | 5.12e-13 | 68.6 |
Msa1232920 | MtrunA17_Chr4g0049061 | 35.000 | 100 | 65 | 0 | 35 | 134 | 34 | 133 | 5.57e-13 | 66.6 |
Msa1232920 | MtrunA17_Chr2g0319401 | 33.735 | 166 | 94 | 5 | 35 | 194 | 26 | 181 | 7.23e-13 | 69.3 |
Msa1232920 | MtrunA17_Chr6g0457621 | 26.812 | 276 | 148 | 11 | 34 | 301 | 32 | 261 | 7.53e-13 | 69.7 |
Msa1232920 | MtrunA17_Chr4g0027411 | 30.841 | 214 | 111 | 7 | 36 | 212 | 9 | 222 | 7.63e-13 | 70.1 |
Msa1232920 | MtrunA17_Chr7g0227641 | 31.193 | 109 | 75 | 0 | 36 | 144 | 11 | 119 | 7.92e-13 | 69.7 |
Msa1232920 | MtrunA17_Chr2g0331741 | 24.415 | 299 | 176 | 9 | 34 | 299 | 78 | 359 | 9.72e-13 | 69.7 |
Msa1232920 | MtrunA17_Chr2g0319411 | 32.323 | 198 | 109 | 8 | 30 | 214 | 16 | 201 | 9.91e-13 | 69.3 |
Msa1232920 | MtrunA17_Chr7g0226481 | 29.193 | 161 | 107 | 4 | 36 | 194 | 11 | 166 | 1.35e-12 | 68.6 |
Msa1232920 | MtrunA17_Chr1g0154471 | 29.381 | 194 | 91 | 6 | 29 | 199 | 10 | 180 | 1.97e-12 | 68.6 |
Msa1232920 | MtrunA17_Chr3g0138571 | 29.091 | 165 | 110 | 3 | 30 | 194 | 7 | 164 | 2.31e-12 | 68.2 |
Msa1232920 | MtrunA17_Chr3g0124041 | 40.278 | 72 | 43 | 0 | 34 | 105 | 10 | 81 | 3.59e-12 | 62.8 |
Msa1232920 | MtrunA17_Chr7g0262091 | 30.247 | 162 | 104 | 5 | 36 | 194 | 18 | 173 | 3.93e-12 | 67.4 |
Msa1232920 | MtrunA17_Chr4g0076481 | 28.667 | 150 | 94 | 4 | 23 | 172 | 17 | 153 | 4.10e-12 | 65.9 |
Msa1232920 | MtrunA17_Chr1g0150411 | 28.311 | 219 | 106 | 7 | 14 | 208 | 4 | 195 | 4.24e-12 | 67.8 |
Msa1232920 | MtrunA17_Chr2g0325431 | 28.846 | 208 | 112 | 5 | 14 | 203 | 4 | 193 | 4.29e-12 | 67.8 |
Msa1232920 | MtrunA17_Chr7g0274231 | 25.333 | 150 | 109 | 1 | 35 | 181 | 11 | 160 | 4.65e-12 | 66.2 |
Msa1232920 | MtrunA17_Chr1g0150401 | 28.205 | 234 | 134 | 6 | 14 | 229 | 4 | 221 | 4.72e-12 | 67.4 |
Msa1232920 | MtrunA17_Chr1g0148651 | 30.000 | 220 | 116 | 8 | 36 | 232 | 326 | 530 | 5.95e-12 | 67.8 |
Msa1232920 | MtrunA17_Chr1g0148651 | 30.804 | 224 | 115 | 9 | 36 | 255 | 7 | 194 | 2.66e-11 | 65.5 |
Msa1232920 | MtrunA17_Chr3g0138371 | 40.278 | 72 | 43 | 0 | 35 | 106 | 19 | 90 | 6.28e-12 | 67.0 |
Msa1232920 | MtrunA17_Chr7g0227771 | 27.841 | 176 | 103 | 4 | 35 | 198 | 3 | 166 | 8.12e-12 | 64.3 |
Msa1232920 | MtrunA17_Chr8g0385451 | 29.121 | 182 | 115 | 6 | 34 | 209 | 13 | 186 | 1.09e-11 | 64.7 |
Msa1232920 | MtrunA17_Chr8g0361241 | 31.159 | 138 | 92 | 2 | 36 | 172 | 12 | 147 | 1.24e-11 | 65.1 |
Msa1232920 | MtrunA17_Chr4g0027441 | 30.797 | 276 | 151 | 13 | 34 | 283 | 7 | 268 | 1.52e-11 | 65.9 |
Msa1232920 | MtrunA17_Chr4g0041581 | 28.000 | 175 | 101 | 6 | 35 | 198 | 22 | 182 | 1.66e-11 | 65.9 |
Msa1232920 | MtrunA17_Chr1g0212411 | 25.430 | 291 | 176 | 10 | 35 | 299 | 31 | 306 | 1.84e-11 | 65.1 |
Msa1232920 | MtrunA17_Chr1g0148661 | 28.902 | 173 | 103 | 4 | 36 | 199 | 18 | 179 | 2.75e-11 | 63.9 |
Msa1232920 | MtrunA17_Chr1g0212391 | 30.857 | 175 | 93 | 5 | 35 | 194 | 25 | 186 | 2.75e-11 | 64.3 |
Msa1232920 | MtrunA17_Chr2g0278121 | 29.412 | 153 | 91 | 5 | 36 | 172 | 16 | 167 | 2.84e-11 | 65.1 |
Msa1232920 | MtrunA17_Chr3g0142561 | 32.353 | 102 | 66 | 2 | 23 | 123 | 4 | 103 | 2.84e-11 | 60.8 |
Msa1232920 | MtrunA17_Chr3g0084231 | 40.278 | 72 | 43 | 0 | 33 | 104 | 22 | 93 | 3.09e-11 | 64.7 |
Msa1232920 | MtrunA17_Chr8g0361351 | 27.570 | 214 | 137 | 7 | 36 | 236 | 12 | 220 | 3.67e-11 | 64.3 |
Msa1232920 | MtrunA17_Chr7g0227621 | 45.000 | 60 | 33 | 0 | 36 | 95 | 11 | 70 | 4.20e-11 | 59.7 |
Msa1232920 | MtrunA17_Chr1g0148641 | 29.379 | 177 | 110 | 3 | 33 | 199 | 28 | 199 | 4.45e-11 | 64.3 |
Msa1232920 | MtrunA17_Chr4g0023311 | 28.033 | 239 | 134 | 9 | 15 | 228 | 10 | 235 | 4.94e-11 | 64.7 |
Msa1232920 | MtrunA17_Chr1g0197671 | 35.227 | 176 | 102 | 6 | 34 | 205 | 19 | 186 | 6.17e-11 | 62.0 |
Msa1232920 | MtrunA17_Chr2g0303231 | 29.885 | 174 | 99 | 5 | 36 | 194 | 25 | 190 | 6.78e-11 | 63.9 |
Msa1232920 | MtrunA17_Chr1g0170171 | 27.350 | 117 | 83 | 2 | 31 | 146 | 20 | 135 | 7.08e-11 | 63.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1232920 | AT1G78840.1 | 26.721 | 247 | 161 | 7 | 41 | 286 | 11 | 238 | 3.08e-14 | 74.7 |
Msa1232920 | AT1G78840.2 | 26.721 | 247 | 161 | 7 | 41 | 286 | 11 | 238 | 3.08e-14 | 74.7 |
Msa1232920 | AT5G53840.1 | 34.641 | 153 | 84 | 6 | 33 | 180 | 15 | 156 | 4.14e-14 | 74.3 |
Msa1232920 | AT1G51370.2 | 29.864 | 221 | 131 | 10 | 29 | 241 | 11 | 215 | 1.59e-13 | 72.0 |
Msa1232920 | AT1G51370.3 | 29.412 | 221 | 132 | 9 | 29 | 241 | 11 | 215 | 1.80e-13 | 72.0 |
Msa1232920 | AT1G51370.1 | 29.412 | 221 | 132 | 9 | 29 | 241 | 11 | 215 | 2.34e-13 | 72.0 |
Msa1232920 | AT5G22720.1 | 30.612 | 147 | 95 | 3 | 29 | 172 | 16 | 158 | 2.47e-13 | 72.0 |
Msa1232920 | AT1G69630.1 | 28.313 | 166 | 113 | 4 | 31 | 194 | 13 | 174 | 1.08e-12 | 70.1 |
Msa1232920 | AT5G02920.1 | 34.247 | 146 | 82 | 5 | 35 | 178 | 27 | 160 | 1.16e-12 | 68.2 |
Msa1232920 | AT5G02930.1 | 33.125 | 160 | 92 | 6 | 36 | 191 | 28 | 176 | 1.30e-12 | 69.7 |
Msa1232920 | AT4G03220.1 | 29.070 | 258 | 138 | 12 | 36 | 278 | 24 | 251 | 3.67e-12 | 68.6 |
Msa1232920 | AT5G56370.3 | 30.864 | 162 | 106 | 3 | 36 | 196 | 2 | 158 | 3.31e-11 | 64.7 |
Msa1232920 | AT1G16930.2 | 29.762 | 168 | 102 | 5 | 34 | 195 | 13 | 170 | 4.43e-11 | 65.1 |
Msa1232920 | AT1G16930.1 | 29.762 | 168 | 102 | 5 | 34 | 195 | 13 | 170 | 4.43e-11 | 65.1 |
Msa1232920 | AT1G16930.3 | 29.762 | 168 | 102 | 5 | 34 | 195 | 13 | 170 | 4.43e-11 | 65.1 |
Msa1232920 | AT5G53635.1 | 30.534 | 262 | 129 | 13 | 38 | 280 | 2 | 229 | 4.43e-11 | 64.7 |
Msa1232920 | AT5G56370.1 | 30.864 | 162 | 106 | 3 | 36 | 196 | 2 | 158 | 4.91e-11 | 64.7 |
Msa1232920 | AT5G56370.2 | 30.864 | 162 | 106 | 3 | 36 | 196 | 2 | 158 | 4.91e-11 | 64.7 |
Msa1232920 | AT5G56420.1 | 28.333 | 180 | 90 | 5 | 33 | 194 | 3 | 161 | 7.42e-11 | 64.3 |
Msa1232920 | AT5G56420.2 | 28.333 | 180 | 90 | 5 | 33 | 194 | 3 | 161 | 7.42e-11 | 64.3 |
Msa1232920 | AT5G56420.3 | 28.333 | 180 | 90 | 5 | 33 | 194 | 3 | 161 | 7.42e-11 | 64.3 |
Msa1232920 | AT4G13985.1 | 29.108 | 213 | 118 | 6 | 36 | 232 | 19 | 214 | 9.14e-11 | 63.9 |
Find 133 sgRNAs with CRISPR-Local
Find 278 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CAAATTTCCTTGATGGGTTT+TGG | 0.192361 | 8_2:-9525918 | Msa1232920:five_prime_UTR |
TTTCTCTCATGATTCAATTT+TGG | 0.194782 | 8_2:+9521465 | None:intergenic |
TGAGTTTAGTCTTCCTTCTT+TGG | 0.196025 | 8_2:-9524130 | Msa1232920:CDS |
CGAAAAGGTGGAGGTATATT+TGG | 0.219974 | 8_2:-9524866 | Msa1232920:CDS |
TTCTTATTTACTATCGCTTT+GGG | 0.227303 | 8_2:-9524734 | Msa1232920:CDS |
TGAGATTGTGAATATTTAAA+AGG | 0.239480 | 8_2:-9523649 | Msa1232920:intron |
TAGCTTTGCCCTATGTTATA+CGG | 0.250080 | 8_2:-9524376 | Msa1232920:CDS |
AATGTTTGTCTTATAGTAAA+TGG | 0.271082 | 8_2:-9523773 | Msa1232920:CDS |
TCAATGGATAATTTCTAGTT+TGG | 0.273372 | 8_2:-9525154 | Msa1232920:five_prime_UTR |
GGGTACTGGATTTCCATTTC+GGG | 0.290310 | 8_2:-9521438 | None:intergenic |
TGGTGGACAGCCAGAGGTTT+TGG | 0.297601 | 8_2:+9524620 | None:intergenic |
AGGACTCAAATCTGACTTAA+AGG | 0.311937 | 8_2:+9524287 | None:intergenic |
AACATAGGGCAAAGCTATTT+AGG | 0.315127 | 8_2:+9524382 | None:intergenic |
GAAACCAACTCACATATTAA+TGG | 0.316772 | 8_2:+9525878 | None:intergenic |
AAGTAATGGGTTGTTGAAAA+AGG | 0.320619 | 8_2:+9526051 | None:intergenic |
GGGGTACTGGATTTCCATTT+CGG | 0.322245 | 8_2:-9521439 | Msa1232920:three_prime_UTR |
AAGACAAAATATGATGAATA+AGG | 0.325111 | 8_2:+9524928 | None:intergenic |
TTACTATAAGACAAACATTC+TGG | 0.330922 | 8_2:+9523777 | None:intergenic |
TTCTGTTTGTTTATGAGGAT+TGG | 0.345937 | 8_2:-9525832 | Msa1232920:five_prime_UTR |
AAAACTAGTTTACAGGAATC+TGG | 0.348610 | 8_2:-9525053 | Msa1232920:CDS |
ACAAACGTCTCTTCTCCTTT+TGG | 0.350443 | 8_2:-9524528 | Msa1232920:CDS |
TTTGTTACAAATTTCCTTGA+TGG | 0.354029 | 8_2:-9525925 | Msa1232920:five_prime_UTR |
GTTCTTATTTACTATCGCTT+TGG | 0.358076 | 8_2:-9524735 | Msa1232920:CDS |
TTTGAGGCTCCTTCAATGAT+TGG | 0.364907 | 8_2:+9525740 | None:intergenic |
TTTGGAGGGTAGTAGTTTGA+TGG | 0.365819 | 8_2:-9525136 | Msa1232920:five_prime_UTR |
GAGGTTTCTGTTTGTTTATG+AGG | 0.369660 | 8_2:-9525837 | Msa1232920:five_prime_UTR |
GAGAATTTGGTACCTGACTA+TGG | 0.374270 | 8_2:+9526076 | None:intergenic |
TTTGTTTATGAGGATTGGTT+TGG | 0.379391 | 8_2:-9525827 | Msa1232920:five_prime_UTR |
TCATGAATTACACGAACCTT+TGG | 0.385218 | 8_2:-9524088 | Msa1232920:CDS |
GTGAAGGTTAACCCAACATT+TGG | 0.386881 | 8_2:-9521758 | Msa1232920:three_prime_UTR |
ACTTCCGATAACACCCGAAA+TGG | 0.387108 | 8_2:+9521425 | None:intergenic |
GATACTTTGCACAGAAGGTT+TGG | 0.387198 | 8_2:-9521797 | Msa1232920:three_prime_UTR |
AATGCCGAAAACTAGTTTAC+AGG | 0.387247 | 8_2:-9525060 | Msa1232920:CDS |
TGGTTTGATCAATATGTTAC+GGG | 0.407463 | 8_2:-9524028 | Msa1232920:CDS |
TTCAATTTCAGGTTACTTGT+GGG | 0.410804 | 8_2:-9523818 | Msa1232920:intron |
ACTATGGAAGATGATGATAA+TGG | 0.413546 | 8_2:+9526092 | None:intergenic |
ATGATAACTTTACTATTCAA+TGG | 0.415470 | 8_2:+9525978 | None:intergenic |
TTACTACAATTATTCACATA+AGG | 0.418949 | 8_2:+9521664 | None:intergenic |
AATCTCCGGGCCAAAACCTC+TGG | 0.418965 | 8_2:-9524630 | Msa1232920:CDS |
TTTCAAGAAGTTTGTGTTGT+GGG | 0.420527 | 8_2:-9524790 | Msa1232920:CDS |
TTTAGTCTTCCTTCTTTGGA+TGG | 0.422418 | 8_2:-9524126 | Msa1232920:CDS |
TTATCCATTGAATAGCTGAT+TGG | 0.425310 | 8_2:+9525166 | None:intergenic |
AGTTCGGCTAAACTTGCAAA+TGG | 0.436775 | 8_2:+9524435 | None:intergenic |
TTATGAGGATTGGTTTGGAT+TGG | 0.439636 | 8_2:-9525822 | Msa1232920:five_prime_UTR |
AGGATTGGTTTGGATTGGAT+TGG | 0.440729 | 8_2:-9525817 | Msa1232920:five_prime_UTR |
CATCATAAGGATCCAAATGT+TGG | 0.448727 | 8_2:+9521746 | None:intergenic |
TTGTTACAAATTTCCTTGAT+GGG | 0.449976 | 8_2:-9525924 | Msa1232920:five_prime_UTR |
ATTGCTTGGTATGGTTTGAA+TGG | 0.450647 | 8_2:-9521708 | Msa1232920:three_prime_UTR |
GGTTTGAATGGGAAATGATT+CGG | 0.452133 | 8_2:-9521696 | Msa1232920:three_prime_UTR |
ATATGATGAATAAGGCAATC+TGG | 0.453620 | 8_2:+9524936 | None:intergenic |
AGAGGCAACGGAATTTCAAT+TGG | 0.454657 | 8_2:+9524600 | None:intergenic |
TATGTTACGGGGACATCATA+AGG | 0.455100 | 8_2:-9524016 | Msa1232920:CDS |
TTCAGTGTGTGTTGTGAACC+TGG | 0.457555 | 8_2:-9525083 | Msa1232920:five_prime_UTR |
GAACTTGTGTTCTATCGAAA+AGG | 0.461513 | 8_2:-9524881 | Msa1232920:CDS |
GCATGTCACCTAGCCTGTCC+TGG | 0.463290 | 8_2:+9524958 | None:intergenic |
TGCGGAAGTAGGCAGTTATA+TGG | 0.463855 | 8_2:+9523694 | None:intergenic |
ATTCAATTTCAGGTTACTTG+TGG | 0.467186 | 8_2:-9523819 | Msa1232920:intron |
ATGGATAATTTCTAGTTTGG+AGG | 0.468678 | 8_2:-9525151 | Msa1232920:five_prime_UTR |
TTGGAGGGTAGTAGTTTGAT+GGG | 0.469511 | 8_2:-9525135 | Msa1232920:five_prime_UTR |
TCCAATGATTTGCAACCAAA+AGG | 0.472560 | 8_2:+9524513 | None:intergenic |
TATCATCATCTTCCATAGTC+AGG | 0.473558 | 8_2:-9526088 | Msa1232920:five_prime_UTR |
CTGATATAACCAATCATTGA+AGG | 0.473751 | 8_2:-9525749 | Msa1232920:five_prime_UTR |
TAAGTCAGATTTGAGTCCTA+AGG | 0.473916 | 8_2:-9524283 | Msa1232920:CDS |
ACAAGGATTATTGCTTGGTA+TGG | 0.473997 | 8_2:-9521717 | Msa1232920:three_prime_UTR |
ATGGTTTGATCAATATGTTA+CGG | 0.476561 | 8_2:-9524029 | Msa1232920:CDS |
AAAGGAGAAGAGACGTTTGT+AGG | 0.478600 | 8_2:+9524531 | None:intergenic |
AAATTGACACAATTAGCAAA+TGG | 0.484411 | 8_2:+9524336 | None:intergenic |
GCAGATATCACAAAATCCTT+AGG | 0.486149 | 8_2:+9524267 | None:intergenic |
TCCTTGTGTATATCATCATA+AGG | 0.489284 | 8_2:+9521733 | None:intergenic |
GCATAACATTGAATAATTTG+AGG | 0.490252 | 8_2:+9525724 | None:intergenic |
AAATGGAAGTCATTGAACTT+TGG | 0.491699 | 8_2:-9523756 | Msa1232920:CDS |
CTATGGAAGATGATGATAAT+GGG | 0.493519 | 8_2:+9526093 | None:intergenic |
TTATACGGGAATGGAGCGTC+TGG | 0.494898 | 8_2:-9524361 | Msa1232920:CDS |
GGCAACGGAATTTCAATTGG+TGG | 0.499782 | 8_2:+9524603 | None:intergenic |
TGAAGGATACTTTGCACAGA+AGG | 0.501350 | 8_2:-9521802 | Msa1232920:three_prime_UTR |
TGCCCTATGTTATACGGGAA+TGG | 0.502035 | 8_2:-9524370 | Msa1232920:CDS |
ATCATAAGGATCCAAATGTT+GGG | 0.503049 | 8_2:+9521747 | None:intergenic |
AAAAGAGAGGAGACTTTACA+TGG | 0.503943 | 8_2:-9524048 | Msa1232920:CDS |
AGCTTTGCCCTATGTTATAC+GGG | 0.507164 | 8_2:-9524375 | Msa1232920:CDS |
TTGCTTGGTATGGTTTGAAT+GGG | 0.507874 | 8_2:-9521707 | Msa1232920:three_prime_UTR |
GAGAAGAGACGTTTGTAGGT+TGG | 0.512178 | 8_2:+9524535 | None:intergenic |
CAGCAAATCATTCACTCGGT+TGG | 0.512294 | 8_2:-9524817 | Msa1232920:CDS |
TATACACAAGGATTATTGCT+TGG | 0.513544 | 8_2:-9521722 | Msa1232920:three_prime_UTR |
AAGAAATCAGAATTAATCTC+CGG | 0.513913 | 8_2:-9524644 | Msa1232920:CDS |
TTGTGTTGCGACAGGACACC+AGG | 0.527358 | 8_2:-9524976 | Msa1232920:CDS |
ATTGAATATGCAGCATTACA+TGG | 0.527512 | 8_2:-9524672 | Msa1232920:CDS |
GTGTGTTGTTAGATTGTACA+TGG | 0.529128 | 8_2:-9525207 | Msa1232920:intron |
AAAAGATCCAAAACCCATCA+AGG | 0.531804 | 8_2:+9525911 | None:intergenic |
ATGATCAATCCATCCAAAGA+AGG | 0.536851 | 8_2:+9524117 | None:intergenic |
CTGAGAGCAATTGCGGAAGT+AGG | 0.536899 | 8_2:+9523683 | None:intergenic |
ACACCTTTGATCGGAAGTGC+CGG | 0.540420 | 8_2:+9525691 | None:intergenic |
TTGCGACAGGACACCAGGAC+AGG | 0.540944 | 8_2:-9524971 | Msa1232920:CDS |
CTCAAAGAAGGCACAAGGTG+TGG | 0.541752 | 8_2:+9524149 | None:intergenic |
GCTCCATTCCCGTATAACAT+AGG | 0.543154 | 8_2:+9524367 | None:intergenic |
CTCCATTCCCGTATAACATA+GGG | 0.545398 | 8_2:+9524368 | None:intergenic |
TTTGCTGTTGAAGTACAGAC+AGG | 0.545777 | 8_2:+9524833 | None:intergenic |
TGAACCAATCAGCTATTCAA+TGG | 0.553532 | 8_2:-9525170 | Msa1232920:five_prime_UTR |
TTCAATTGGTGGACAGCCAG+AGG | 0.557133 | 8_2:+9524614 | None:intergenic |
CTTATGCATTGCTGAGGTGA+AGG | 0.559824 | 8_2:-9521774 | Msa1232920:three_prime_UTR |
TGCAAATGGATTTGAAAAGT+CGG | 0.561253 | 8_2:+9524449 | None:intergenic |
TGGATAATTTCTAGTTTGGA+GGG | 0.562228 | 8_2:-9525150 | Msa1232920:five_prime_UTR |
AGGAAGACTAAACTCAAAGA+AGG | 0.562750 | 8_2:+9524137 | None:intergenic |
CTATACCGCAACTGTACAGA+AGG | 0.567862 | 8_2:+9523975 | None:intergenic |
TCAATTTCAGGTTACTTGTG+GGG | 0.572484 | 8_2:-9523817 | Msa1232920:intron |
CGGTCGGACACACCTTTGAT+CGG | 0.575160 | 8_2:+9525682 | None:intergenic |
CTACATGCTGAGAGCAATTG+CGG | 0.575217 | 8_2:+9523676 | None:intergenic |
GCACCGGCACTTCCGATCAA+AGG | 0.579976 | 8_2:-9525694 | Msa1232920:intron |
ATTTCAAGAAGTTTGTGTTG+TGG | 0.581606 | 8_2:-9524791 | Msa1232920:CDS |
AGACTCAAGTTACTGAGTTG+CGG | 0.587346 | 8_2:+9524243 | None:intergenic |
AGAAATCAGAATTAATCTCC+GGG | 0.587391 | 8_2:-9524643 | Msa1232920:CDS |
ACAGGACACCAGGACAGGCT+AGG | 0.588272 | 8_2:-9524966 | Msa1232920:CDS |
TTTGAAAAGTCGGCTGCGGT+AGG | 0.591591 | 8_2:+9524459 | None:intergenic |
ATGTTATGCATCAATAGCAC+CGG | 0.594570 | 8_2:-9525710 | Msa1232920:five_prime_UTR |
AAGTCATTGAACTTTGGAGT+GGG | 0.596146 | 8_2:-9523750 | Msa1232920:CDS |
CTTGTGTTCTATCGAAAAGG+TGG | 0.601646 | 8_2:-9524878 | Msa1232920:CDS |
GTGTTCTATCGAAAAGGTGG+AGG | 0.603379 | 8_2:-9524875 | Msa1232920:CDS |
GAAGTCATTGAACTTTGGAG+TGG | 0.607082 | 8_2:-9523751 | Msa1232920:CDS |
ACTATCCTTCTGTACAGTTG+CGG | 0.608906 | 8_2:-9523980 | Msa1232920:intron |
GTGTATAATTGTGTTGCGAC+AGG | 0.610973 | 8_2:-9524984 | Msa1232920:CDS |
CTACGATCTTACATCTAAAG+CGG | 0.616468 | 8_2:+9524211 | None:intergenic |
TGGATTTGAAAAGTCGGCTG+CGG | 0.623356 | 8_2:+9524455 | None:intergenic |
AATCTGGTTCTGTTATGAAG+AGG | 0.633572 | 8_2:-9525037 | Msa1232920:CDS |
CTAAACTCAAAGAAGGCACA+AGG | 0.634438 | 8_2:+9524144 | None:intergenic |
TCAACAGCAAATCATTCACT+CGG | 0.634747 | 8_2:-9524821 | Msa1232920:CDS |
GTTTGGCTTATGCATTGCTG+AGG | 0.638849 | 8_2:-9521780 | Msa1232920:three_prime_UTR |
TCTTATTTACTATCGCTTTG+GGG | 0.648748 | 8_2:-9524733 | Msa1232920:CDS |
ATCTCATCGAAATAAAAGAG+AGG | 0.652681 | 8_2:-9524061 | Msa1232920:CDS |
TCCTTATGATGATATACACA+AGG | 0.655387 | 8_2:-9521734 | Msa1232920:three_prime_UTR |
TAACTGAAATTGAGAAGCTG+TGG | 0.665853 | 8_2:+9524180 | None:intergenic |
CTTTGGGGTAGATTATGCGA+CGG | 0.678356 | 8_2:-9524718 | Msa1232920:CDS |
TTGCTGTTGAAGTACAGACA+GGG | 0.681711 | 8_2:+9524834 | None:intergenic |
GGTTTGATCAATATGTTACG+GGG | 0.698782 | 8_2:-9524027 | Msa1232920:CDS |
TGTTGTTAGATTGTACATGG+AGG | 0.734338 | 8_2:-9525204 | Msa1232920:intron |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | CTTTTTTAATTTTTATTTGT+TGG | - | chr8_2:9521547-9521566 | Msa1232920:intron | 10.0% |
!!! | CCATTTTTTAAAATTATTAT+CGG | - | chr8_2:9521926-9521945 | Msa1232920:intron | 10.0% |
!!! | TTTTATTTATATTCAATTTC+AGG | - | chr8_2:9523735-9523754 | Msa1232920:CDS | 10.0% |
!!! | TTTTAAAAAATGGCATAATT+TGG | + | chr8_2:9521919-9521938 | None:intergenic | 15.0% |
!!! | CCGATAATAATTTTAAAAAA+TGG | + | chr8_2:9521929-9521948 | None:intergenic | 15.0% |
!! | ATTTCATATAATTAGGATTT+AGG | + | chr8_2:9522094-9522113 | None:intergenic | 15.0% |
!! | TTGTCAAAAGAAATATAATT+AGG | - | chr8_2:9523701-9523720 | Msa1232920:CDS | 15.0% |
!! | TTCATATTCATAGTAATAAA+GGG | + | chr8_2:9523979-9523998 | None:intergenic | 15.0% |
!! | ATTCATATTCATAGTAATAA+AGG | + | chr8_2:9523980-9523999 | None:intergenic | 15.0% |
!!! | TTACTATGAATATGAATTTT+TGG | - | chr8_2:9523983-9524002 | Msa1232920:CDS | 15.0% |
!!! | ATCATTCTAAAATAACAAAT+TGG | - | chr8_2:9524064-9524083 | Msa1232920:CDS | 15.0% |
!!! | AACTTTTCAAAAATATGTAT+AGG | - | chr8_2:9524253-9524272 | Msa1232920:CDS | 15.0% |
!!! | AATTTTCAAGTAACAAAATT+GGG | + | chr8_2:9524457-9524476 | None:intergenic | 15.0% |
!! | ACCAAATAATCAATTATATA+GGG | + | chr8_2:9525072-9525091 | None:intergenic | 15.0% |
!! | AACCAAATAATCAATTATAT+AGG | + | chr8_2:9525073-9525092 | None:intergenic | 15.0% |
!! | GAAAAAAAAAGAATCAAATA+GGG | + | chr8_2:9525723-9525742 | None:intergenic | 15.0% |
!! | AGAAAAAAAAAGAATCAAAT+AGG | + | chr8_2:9525724-9525743 | None:intergenic | 15.0% |
!!! | TTTTTTTTTAAACTGAGAAA+TGG | + | chr8_2:9526004-9526023 | None:intergenic | 15.0% |
!! | AGAAGAAGAAAAAAAGTAAT+GGG | + | chr8_2:9521529-9521548 | None:intergenic | 20.0% |
!! | AAGAAGAAGAAAAAAAGTAA+TGG | + | chr8_2:9521530-9521549 | None:intergenic | 20.0% |
!! | ATGATAACTTTACTATTCAA+TGG | + | chr8_2:9521589-9521608 | None:intergenic | 20.0% |
!! | ATGAGAATGTATATATACTA+TGG | - | chr8_2:9522033-9522052 | Msa1232920:intron | 20.0% |
!!! | ATACTATGGTTCTTTTTATA+AGG | - | chr8_2:9522047-9522066 | Msa1232920:intron | 20.0% |
!! | GATCACTATTTCATATAATT+AGG | + | chr8_2:9522101-9522120 | None:intergenic | 20.0% |
!! | GCAATTACTAAACTTAAAAA+TGG | + | chr8_2:9522123-9522142 | None:intergenic | 20.0% |
!! | TTTAATAGTGTATGTACTAT+TGG | - | chr8_2:9522204-9522223 | Msa1232920:intron | 20.0% |
!! | TTTCTTATATATAGAATCGA+AGG | - | chr8_2:9522309-9522328 | Msa1232920:intron | 20.0% |
!! | AAGACAAAATATGATGAATA+AGG | + | chr8_2:9522639-9522658 | None:intergenic | 20.0% |
!!! | TCATCATATTTTGTCTTTTA+TGG | - | chr8_2:9522642-9522661 | Msa1232920:intron | 20.0% |
!! | CAAAAGAAATATAATTAGGA+TGG | - | chr8_2:9523705-9523724 | Msa1232920:CDS | 20.0% |
!! | AATGTTTGTCTTATAGTAAA+TGG | - | chr8_2:9523791-9523810 | Msa1232920:CDS | 20.0% |
!! | TGAGATTGTGAATATTTAAA+AGG | - | chr8_2:9523915-9523934 | Msa1232920:intron | 20.0% |
!! | TAAATTATTTAAGGATGAAC+AGG | + | chr8_2:9523952-9523971 | None:intergenic | 20.0% |
!! | AAGGGAGAATAAATTATTTA+AGG | + | chr8_2:9523961-9523980 | None:intergenic | 20.0% |
!! | TTCAAAAATATGTATAGGAT+AGG | - | chr8_2:9524258-9524277 | Msa1232920:CDS | 20.0% |
!!! | GAATTTTCAAGTAACAAAAT+TGG | + | chr8_2:9524458-9524477 | None:intergenic | 20.0% |
!!! | ATTCTTTCCTAAACTATTTT+GGG | + | chr8_2:9524943-9524962 | None:intergenic | 20.0% |
!!! | TATTTTTTTACAAGTTCAAG+AGG | + | chr8_2:9525020-9525039 | None:intergenic | 20.0% |
!! | TTAATGAACTGTAAAACAAT+GGG | + | chr8_2:9525500-9525519 | None:intergenic | 20.0% |
!!! | TTCTACATTTAACATTTTCT+TGG | - | chr8_2:9525647-9525666 | Msa1232920:intron | 20.0% |
!!! | TCTACATTTAACATTTTCTT+GGG | - | chr8_2:9525648-9525667 | Msa1232920:intron | 20.0% |
!!! | GTTTTTGTATTAGATTTTGA+AGG | - | chr8_2:9525745-9525764 | Msa1232920:five_prime_UTR | 20.0% |
!! | TTACTACAATTATTCACATA+AGG | + | chr8_2:9525903-9525922 | None:intergenic | 20.0% |
!!! | TCTTGTTATTTTGCTATTTA+GGG | + | chr8_2:9526061-9526080 | None:intergenic | 20.0% |
!!! | TTCTTGTTATTTTGCTATTT+AGG | + | chr8_2:9526062-9526081 | None:intergenic | 20.0% |
! | TTTGTTACAAATTTCCTTGA+TGG | - | chr8_2:9521639-9521658 | Msa1232920:three_prime_UTR | 25.0% |
! | TTGTTACAAATTTCCTTGAT+GGG | - | chr8_2:9521640-9521659 | Msa1232920:three_prime_UTR | 25.0% |
!! | TTTTCCATTAATATGTGAGT+TGG | - | chr8_2:9521682-9521701 | Msa1232920:three_prime_UTR | 25.0% |
!!! | CTTTGTTTCAATTTTCTTTG+AGG | - | chr8_2:9521708-9521727 | Msa1232920:three_prime_UTR | 25.0% |
! | GCATAACATTGAATAATTTG+AGG | + | chr8_2:9521843-9521862 | None:intergenic | 25.0% |
! | TATCAAGATGAGTAATTAAC+CGG | + | chr8_2:9521984-9522003 | None:intergenic | 25.0% |
!! | AGGAATAGTTAATGTGTTTT+AGG | - | chr8_2:9522067-9522086 | Msa1232920:intron | 25.0% |
! | TCTAACAACACACAAAAAAA+CGG | + | chr8_2:9522350-9522369 | None:intergenic | 25.0% |
!!! | TCAATGGATAATTTCTAGTT+TGG | - | chr8_2:9522410-9522429 | Msa1232920:intron | 25.0% |
!! | TTCTTATTTACTATCGCTTT+GGG | - | chr8_2:9522830-9522849 | Msa1232920:intron | 25.0% |
! | AAGAAATCAGAATTAATCTC+CGG | - | chr8_2:9522920-9522939 | Msa1232920:intron | 25.0% |
! | TGTTGTAAAACCAAAAAGTT+CGG | + | chr8_2:9523148-9523167 | None:intergenic | 25.0% |
! | AAATTGACACAATTAGCAAA+TGG | + | chr8_2:9523231-9523250 | None:intergenic | 25.0% |
! | ATGGTTTGATCAATATGTTA+CGG | - | chr8_2:9523535-9523554 | Msa1232920:intron | 25.0% |
! | TTACTATAAGACAAACATTC+TGG | + | chr8_2:9523790-9523809 | None:intergenic | 25.0% |
!! | TAACAAATTGGTCTAATGAT+TGG | - | chr8_2:9524076-9524095 | Msa1232920:CDS | 25.0% |
! | TGGTTAAAATTTCTAACTAG+TGG | - | chr8_2:9524096-9524115 | Msa1232920:CDS | 25.0% |
!!! | TTGAGCTATTTCAATTTTCA+TGG | + | chr8_2:9524813-9524832 | None:intergenic | 25.0% |
! | GTGTATATATACCTAATCTA+GGG | + | chr8_2:9524919-9524938 | None:intergenic | 25.0% |
! | TGTGTATATATACCTAATCT+AGG | + | chr8_2:9524920-9524939 | None:intergenic | 25.0% |
!! | GATTCTTTCCTAAACTATTT+TGG | + | chr8_2:9524944-9524963 | None:intergenic | 25.0% |
! | TCATATTTCACTGTATAATC+AGG | - | chr8_2:9524986-9525005 | Msa1232920:CDS | 25.0% |
! | GCCCTATATAATTGATTATT+TGG | - | chr8_2:9525068-9525087 | Msa1232920:exon | 25.0% |
!!! | TATTTGGTTCTTATGAAATC+TGG | - | chr8_2:9525084-9525103 | Msa1232920:five_prime_UTR | 25.0% |
! | AATAACCAATTATGAGAGTA+TGG | - | chr8_2:9525124-9525143 | Msa1232920:five_prime_UTR | 25.0% |
! | ACTTCTATGAAAAAACTGTT+TGG | - | chr8_2:9525286-9525305 | Msa1232920:intron | 25.0% |
! | CTTAATGAACTGTAAAACAA+TGG | + | chr8_2:9525501-9525520 | None:intergenic | 25.0% |
! | CAGTTCATTAAGTATTTGTA+CGG | - | chr8_2:9525509-9525528 | Msa1232920:intron | 25.0% |
! | GTATAATTATTTACATCCAC+AGG | + | chr8_2:9525550-9525569 | None:intergenic | 25.0% |
!!! | GTATTTTGACTGTAATTTTG+TGG | - | chr8_2:9525978-9525997 | Msa1232920:five_prime_UTR | 25.0% |
!! | TTTCTCTCATGATTCAATTT+TGG | + | chr8_2:9526102-9526121 | None:intergenic | 25.0% |
! | ATTGAATCATGAGAGAAAAA+CGG | - | chr8_2:9526104-9526123 | Msa1232920:five_prime_UTR | 25.0% |
CTATGGAAGATGATGATAAT+GGG | + | chr8_2:9521474-9521493 | None:intergenic | 30.0% | |
ACTATGGAAGATGATGATAA+TGG | + | chr8_2:9521475-9521494 | None:intergenic | 30.0% | |
GTTGAAAAAGGAAGAGAATT+TGG | + | chr8_2:9521504-9521523 | None:intergenic | 30.0% | |
!! | AAGTAATGGGTTGTTGAAAA+AGG | + | chr8_2:9521516-9521535 | None:intergenic | 30.0% |
GAAACCAACTCACATATTAA+TGG | + | chr8_2:9521689-9521708 | None:intergenic | 30.0% | |
TTCTGTTTGTTTATGAGGAT+TGG | - | chr8_2:9521732-9521751 | Msa1232920:three_prime_UTR | 30.0% | |
!! | TTTGTTTATGAGGATTGGTT+TGG | - | chr8_2:9521737-9521756 | Msa1232920:three_prime_UTR | 30.0% |
CTGATATAACCAATCATTGA+AGG | - | chr8_2:9521815-9521834 | Msa1232920:intron | 30.0% | |
! | ATAATTTGGTGACATGTCAT+CGG | + | chr8_2:9521905-9521924 | None:intergenic | 30.0% |
TCATAAGAAAACTTAGCAAC+AGG | + | chr8_2:9522017-9522036 | None:intergenic | 30.0% | |
GTATGTACTATTGGTATTTC+TGG | - | chr8_2:9522213-9522232 | Msa1232920:intron | 30.0% | |
TTAACACTTTCCATTGATCT+TGG | - | chr8_2:9522242-9522261 | Msa1232920:intron | 30.0% | |
TTTGATATCACCAAGATCAA+TGG | + | chr8_2:9522255-9522274 | None:intergenic | 30.0% | |
! | CAAATGCTTTTCATTTGTCT+TGG | - | chr8_2:9522271-9522290 | Msa1232920:intron | 30.0% |
TTATCCATTGAATAGCTGAT+TGG | + | chr8_2:9522401-9522420 | None:intergenic | 30.0% | |
!! | ATGGATAATTTCTAGTTTGG+AGG | - | chr8_2:9522413-9522432 | Msa1232920:intron | 30.0% |
!! | TGGATAATTTCTAGTTTGGA+GGG | - | chr8_2:9522414-9522433 | Msa1232920:intron | 30.0% |
!!! | GATTCCTGTAAACTAGTTTT+CGG | + | chr8_2:9522511-9522530 | None:intergenic | 30.0% |
! | AAAACTAGTTTACAGGAATC+TGG | - | chr8_2:9522511-9522530 | Msa1232920:intron | 30.0% |
ATATGATGAATAAGGCAATC+TGG | + | chr8_2:9522631-9522650 | None:intergenic | 30.0% | |
ATTTCAAGAAGTTTGTGTTG+TGG | - | chr8_2:9522773-9522792 | Msa1232920:intron | 30.0% | |
TTTCAAGAAGTTTGTGTTGT+GGG | - | chr8_2:9522774-9522793 | Msa1232920:intron | 30.0% | |
! | GTTCTTATTTACTATCGCTT+TGG | - | chr8_2:9522829-9522848 | Msa1232920:intron | 30.0% |
! | TCTTATTTACTATCGCTTTG+GGG | - | chr8_2:9522831-9522850 | Msa1232920:intron | 30.0% |
! | GGATCAGTATCTTTTGAATA+AGG | - | chr8_2:9522867-9522886 | Msa1232920:intron | 30.0% |
ATTGAATATGCAGCATTACA+TGG | - | chr8_2:9522892-9522911 | Msa1232920:intron | 30.0% | |
AGAAATCAGAATTAATCTCC+GGG | - | chr8_2:9522921-9522940 | Msa1232920:intron | 30.0% | |
!! | TTTTAACTCGAGTCTTTTCA+AGG | + | chr8_2:9523004-9523023 | None:intergenic | 30.0% |
! | TGCAAATGGATTTGAAAAGT+CGG | + | chr8_2:9523118-9523137 | None:intergenic | 30.0% |
! | TTTCGATGAGATTTTTCCAA+AGG | + | chr8_2:9523495-9523514 | None:intergenic | 30.0% |
ATCTCATCGAAATAAAAGAG+AGG | - | chr8_2:9523503-9523522 | Msa1232920:intron | 30.0% | |
TGGTTTGATCAATATGTTAC+GGG | - | chr8_2:9523536-9523555 | Msa1232920:intron | 30.0% | |
!! | ATTCAATTTCAGGTTACTTG+TGG | - | chr8_2:9523745-9523764 | Msa1232920:CDS | 30.0% |
!! | TTCAATTTCAGGTTACTTGT+GGG | - | chr8_2:9523746-9523765 | Msa1232920:CDS | 30.0% |
AAATGGAAGTCATTGAACTT+TGG | - | chr8_2:9523808-9523827 | Msa1232920:CDS | 30.0% | |
!!! | ATTTGCGTGTATACTTTTTC+CGG | - | chr8_2:9524176-9524195 | Msa1232920:CDS | 30.0% |
! | AATTTTGGATGTTACCCAAT+AGG | - | chr8_2:9524206-9524225 | Msa1232920:CDS | 30.0% |
TTACAAACGTCTATATCAGA+AGG | + | chr8_2:9524480-9524499 | None:intergenic | 30.0% | |
ATAAAGTGAGACATTGCTAT+GGG | + | chr8_2:9524538-9524557 | None:intergenic | 30.0% | |
TATAAAGTGAGACATTGCTA+TGG | + | chr8_2:9524539-9524558 | None:intergenic | 30.0% | |
TCTCACTTTATACAAGACTA+AGG | - | chr8_2:9524547-9524566 | Msa1232920:CDS | 30.0% | |
CTCACTTTATACAAGACTAA+GGG | - | chr8_2:9524548-9524567 | Msa1232920:CDS | 30.0% | |
AATTCGCATTATCTTTCGTA+AGG | + | chr8_2:9524786-9524805 | None:intergenic | 30.0% | |
TAGCTCAATATGTACTAAGA+AGG | - | chr8_2:9524825-9524844 | Msa1232920:CDS | 30.0% | |
!!! | AGTTTTAGAAACCCTAGATT+AGG | - | chr8_2:9524905-9524924 | Msa1232920:CDS | 30.0% |
ATACACACCCAAAATAGTTT+AGG | - | chr8_2:9524933-9524952 | Msa1232920:CDS | 30.0% | |
GTTTAGGAAAGAATCAAGTA+TGG | - | chr8_2:9524949-9524968 | Msa1232920:CDS | 30.0% | |
AATGACCATACTCTCATAAT+TGG | + | chr8_2:9525132-9525151 | None:intergenic | 30.0% | |
TAGCATGAAATAATTGATCC+TGG | - | chr8_2:9525187-9525206 | Msa1232920:five_prime_UTR | 30.0% | |
TTGATCAATTACTTAAGTCC+AGG | + | chr8_2:9525208-9525227 | None:intergenic | 30.0% | |
! | ACAGTTATGCAAGTATTTTG+GGG | + | chr8_2:9525388-9525407 | None:intergenic | 30.0% |
! | CACAGTTATGCAAGTATTTT+GGG | + | chr8_2:9525389-9525408 | None:intergenic | 30.0% |
!!! | TTCTATTTTCTTTAGAGCAG+TGG | - | chr8_2:9525445-9525464 | Msa1232920:intron | 30.0% |
AGTGGAAGATGATTAGTATT+TGG | - | chr8_2:9525463-9525482 | Msa1232920:intron | 30.0% | |
! | AGTCACCATGATAACATTTT+TGG | - | chr8_2:9525598-9525617 | Msa1232920:intron | 30.0% |
! | GTCACCATGATAACATTTTT+GGG | - | chr8_2:9525599-9525618 | Msa1232920:intron | 30.0% |
ATCATAAGGATCCAAATGTT+GGG | + | chr8_2:9525820-9525839 | None:intergenic | 30.0% | |
TCCTTATGATGATATACACA+AGG | - | chr8_2:9525830-9525849 | Msa1232920:five_prime_UTR | 30.0% | |
TCCTTGTGTATATCATCATA+AGG | + | chr8_2:9525834-9525853 | None:intergenic | 30.0% | |
TATACACAAGGATTATTGCT+TGG | - | chr8_2:9525842-9525861 | Msa1232920:five_prime_UTR | 30.0% | |
TTGAATCATGAGAGAAAAAC+GGG | - | chr8_2:9526105-9526124 | Msa1232920:five_prime_UTR | 30.0% | |
TATCATCATCTTCCATAGTC+AGG | - | chr8_2:9521476-9521495 | Msa1232920:three_prime_UTR | 35.0% | |
!!! | CAAATTTCCTTGATGGGTTT+TGG | - | chr8_2:9521646-9521665 | Msa1232920:three_prime_UTR | 35.0% |
AAAAGATCCAAAACCCATCA+AGG | + | chr8_2:9521656-9521675 | None:intergenic | 35.0% | |
GAGGTTTCTGTTTGTTTATG+AGG | - | chr8_2:9521727-9521746 | Msa1232920:three_prime_UTR | 35.0% | |
!! | TTATGAGGATTGGTTTGGAT+TGG | - | chr8_2:9521742-9521761 | Msa1232920:three_prime_UTR | 35.0% |
ATGTTATGCATCAATAGCAC+CGG | - | chr8_2:9521854-9521873 | Msa1232920:intron | 35.0% | |
! | GTGTGTTGTTAGATTGTACA+TGG | - | chr8_2:9522357-9522376 | Msa1232920:intron | 35.0% |
TGTTGTTAGATTGTACATGG+AGG | - | chr8_2:9522360-9522379 | Msa1232920:intron | 35.0% | |
TGAACCAATCAGCTATTCAA+TGG | - | chr8_2:9522394-9522413 | Msa1232920:intron | 35.0% | |
! | AATGCCGAAAACTAGTTTAC+AGG | - | chr8_2:9522504-9522523 | Msa1232920:intron | 35.0% |
!! | AATCTGGTTCTGTTATGAAG+AGG | - | chr8_2:9522527-9522546 | Msa1232920:intron | 35.0% |
GAACTTGTGTTCTATCGAAA+AGG | - | chr8_2:9522683-9522702 | Msa1232920:intron | 35.0% | |
TCAACAGCAAATCATTCACT+CGG | - | chr8_2:9522743-9522762 | Msa1232920:intron | 35.0% | |
!! | TCCTTTTGGTTGCAAATCAT+TGG | - | chr8_2:9523050-9523069 | Msa1232920:intron | 35.0% |
! | TCCAATGATTTGCAACCAAA+AGG | + | chr8_2:9523054-9523073 | None:intergenic | 35.0% |
GAAACATTGAAAAATGCTCG+AGG | + | chr8_2:9523086-9523105 | None:intergenic | 35.0% | |
AACATAGGGCAAAGCTATTT+AGG | + | chr8_2:9523185-9523204 | None:intergenic | 35.0% | |
! | TAGCTTTGCCCTATGTTATA+CGG | - | chr8_2:9523188-9523207 | Msa1232920:intron | 35.0% |
AGGACTCAAATCTGACTTAA+AGG | + | chr8_2:9523280-9523299 | None:intergenic | 35.0% | |
TAAGTCAGATTTGAGTCCTA+AGG | - | chr8_2:9523281-9523300 | Msa1232920:intron | 35.0% | |
GCAGATATCACAAAATCCTT+AGG | + | chr8_2:9523300-9523319 | None:intergenic | 35.0% | |
CTACGATCTTACATCTAAAG+CGG | + | chr8_2:9523356-9523375 | None:intergenic | 35.0% | |
TAACTGAAATTGAGAAGCTG+TGG | + | chr8_2:9523387-9523406 | None:intergenic | 35.0% | |
AGGAAGACTAAACTCAAAGA+AGG | + | chr8_2:9523430-9523449 | None:intergenic | 35.0% | |
! | TGAGTTTAGTCTTCCTTCTT+TGG | - | chr8_2:9523434-9523453 | Msa1232920:intron | 35.0% |
! | TTTAGTCTTCCTTCTTTGGA+TGG | - | chr8_2:9523438-9523457 | Msa1232920:intron | 35.0% |
ATGATCAATCCATCCAAAGA+AGG | + | chr8_2:9523450-9523469 | None:intergenic | 35.0% | |
TCATGAATTACACGAACCTT+TGG | - | chr8_2:9523476-9523495 | Msa1232920:intron | 35.0% | |
AAAAGAGAGGAGACTTTACA+TGG | - | chr8_2:9523516-9523535 | Msa1232920:intron | 35.0% | |
GGTTTGATCAATATGTTACG+GGG | - | chr8_2:9523537-9523556 | Msa1232920:intron | 35.0% | |
!! | TCAATTTCAGGTTACTTGTG+GGG | - | chr8_2:9523747-9523766 | Msa1232920:CDS | 35.0% |
!!! | CAAACATTCTGGCTTTTCTA+AGG | + | chr8_2:9523779-9523798 | None:intergenic | 35.0% |
!! | AAGTCATTGAACTTTGGAGT+GGG | - | chr8_2:9523814-9523833 | Msa1232920:intron | 35.0% |
! | TTTTCCGGACATGAGAATTT+TGG | - | chr8_2:9524191-9524210 | Msa1232920:CDS | 35.0% |
ACATCCAAAATTCTCATGTC+CGG | + | chr8_2:9524198-9524217 | None:intergenic | 35.0% | |
! | TAACCTATACATCTTGCTGT+GGG | + | chr8_2:9524367-9524386 | None:intergenic | 35.0% |
ATAACCTATACATCTTGCTG+TGG | + | chr8_2:9524368-9524387 | None:intergenic | 35.0% | |
TGCTATGGGATGAATATTTC+AGG | + | chr8_2:9524524-9524543 | None:intergenic | 35.0% | |
TCAATCTTTCCCAACAGATA+GGG | - | chr8_2:9524576-9524595 | Msa1232920:CDS | 35.0% | |
ATTATAATCAGTGTCGTGTC+CGG | + | chr8_2:9524629-9524648 | None:intergenic | 35.0% | |
TTGAATTTAACCACGTGTGT+CGG | - | chr8_2:9524663-9524682 | Msa1232920:CDS | 35.0% | |
GCACTAACACTTCAATTTGA+AGG | + | chr8_2:9524723-9524742 | None:intergenic | 35.0% | |
! | TGAAGTGTTAGTGCAACTTA+AGG | - | chr8_2:9524729-9524748 | Msa1232920:CDS | 35.0% |
! | GAAGTGTTAGTGCAACTTAA+GGG | - | chr8_2:9524730-9524749 | Msa1232920:CDS | 35.0% |
AGAACGAACAATGAAAACAC+AGG | + | chr8_2:9524884-9524903 | None:intergenic | 35.0% | |
! | GCACAGTTATGCAAGTATTT+TGG | + | chr8_2:9525390-9525409 | None:intergenic | 35.0% |
GAACTGTAAAACAATGGGTA+AGG | + | chr8_2:9525495-9525514 | None:intergenic | 35.0% | |
TCGACCCAAAAATGTTATCA+TGG | + | chr8_2:9525606-9525625 | None:intergenic | 35.0% | |
CATCATAAGGATCCAAATGT+TGG | + | chr8_2:9525821-9525840 | None:intergenic | 35.0% | |
ACAAGGATTATTGCTTGGTA+TGG | - | chr8_2:9525847-9525866 | Msa1232920:five_prime_UTR | 35.0% | |
ATTGCTTGGTATGGTTTGAA+TGG | - | chr8_2:9525856-9525875 | Msa1232920:five_prime_UTR | 35.0% | |
TTGCTTGGTATGGTTTGAAT+GGG | - | chr8_2:9525857-9525876 | Msa1232920:five_prime_UTR | 35.0% | |
GGTTTGAATGGGAAATGATT+CGG | - | chr8_2:9525868-9525887 | Msa1232920:five_prime_UTR | 35.0% | |
TGAATCATGAGAGAAAAACG+GGG | - | chr8_2:9526106-9526125 | Msa1232920:five_prime_UTR | 35.0% | |
GAGAATTTGGTACCTGACTA+TGG | + | chr8_2:9521491-9521510 | None:intergenic | 40.0% | |
!! | AGGATTGGTTTGGATTGGAT+TGG | - | chr8_2:9521747-9521766 | Msa1232920:three_prime_UTR | 40.0% |
! | TTTGAGGCTCCTTCAATGAT+TGG | + | chr8_2:9521827-9521846 | None:intergenic | 40.0% |
CAAGATGAGTAATTAACCGG+TGG | + | chr8_2:9521981-9522000 | None:intergenic | 40.0% | |
GAAAACTTAGCAACAGGAAG+TGG | + | chr8_2:9522011-9522030 | None:intergenic | 40.0% | |
TTTGGAGGGTAGTAGTTTGA+TGG | - | chr8_2:9522428-9522447 | Msa1232920:intron | 40.0% | |
TTGGAGGGTAGTAGTTTGAT+GGG | - | chr8_2:9522429-9522448 | Msa1232920:intron | 40.0% | |
!!! | AAACTAGTTTTCGGCATTCC+AGG | + | chr8_2:9522502-9522521 | None:intergenic | 40.0% |
GTGTATAATTGTGTTGCGAC+AGG | - | chr8_2:9522580-9522599 | Msa1232920:intron | 40.0% | |
CTTGTGTTCTATCGAAAAGG+TGG | - | chr8_2:9522686-9522705 | Msa1232920:intron | 40.0% | |
! | CGAAAAGGTGGAGGTATATT+TGG | - | chr8_2:9522698-9522717 | Msa1232920:intron | 40.0% |
! | TTGCTGTTGAAGTACAGACA+GGG | + | chr8_2:9522733-9522752 | None:intergenic | 40.0% |
!! | TTTGCTGTTGAAGTACAGAC+AGG | + | chr8_2:9522734-9522753 | None:intergenic | 40.0% |
AGAGGCAACGGAATTTCAAT+TGG | + | chr8_2:9522967-9522986 | None:intergenic | 40.0% | |
TGGCAAGTAAAAAGAGGCAA+CGG | + | chr8_2:9522979-9522998 | None:intergenic | 40.0% | |
! | AAGGACTGGCAAGTAAAAAG+AGG | + | chr8_2:9522985-9523004 | None:intergenic | 40.0% |
AAAGGAGAAGAGACGTTTGT+AGG | + | chr8_2:9523036-9523055 | None:intergenic | 40.0% | |
! | ACAAACGTCTCTTCTCCTTT+TGG | - | chr8_2:9523036-9523055 | Msa1232920:intron | 40.0% |
AGTTCGGCTAAACTTGCAAA+TGG | + | chr8_2:9523132-9523151 | None:intergenic | 40.0% | |
! | GCAAGTTTAGCCGAACTTTT+TGG | - | chr8_2:9523135-9523154 | Msa1232920:intron | 40.0% |
AGCTTTGCCCTATGTTATAC+GGG | - | chr8_2:9523189-9523208 | Msa1232920:intron | 40.0% | |
CTCCATTCCCGTATAACATA+GGG | + | chr8_2:9523199-9523218 | None:intergenic | 40.0% | |
AGACTCAAGTTACTGAGTTG+CGG | + | chr8_2:9523324-9523343 | None:intergenic | 40.0% | |
! | CTAAACTCAAAGAAGGCACA+AGG | + | chr8_2:9523423-9523442 | None:intergenic | 40.0% |
TATGTTACGGGGACATCATA+AGG | - | chr8_2:9523548-9523567 | Msa1232920:intron | 40.0% | |
ACTATCCTTCTGTACAGTTG+CGG | - | chr8_2:9523584-9523603 | Msa1232920:intron | 40.0% | |
! | GAAGTCATTGAACTTTGGAG+TGG | - | chr8_2:9523813-9523832 | Msa1232920:intron | 40.0% |
TACCCAATAGGCTTCAAAGT+CGG | - | chr8_2:9524218-9524237 | Msa1232920:CDS | 40.0% | |
ATACCCACAGCAAGATGTAT+AGG | - | chr8_2:9524361-9524380 | Msa1232920:CDS | 40.0% | |
GGGATGAATATTTCAGGAAG+AGG | + | chr8_2:9524518-9524537 | None:intergenic | 40.0% | |
CTATCTGTTGGGAAAGATTG+AGG | + | chr8_2:9524577-9524596 | None:intergenic | 40.0% | |
CTCAATCTTTCCCAACAGAT+AGG | - | chr8_2:9524575-9524594 | Msa1232920:CDS | 40.0% | |
! | ATAGGGTATCCCTATCTGTT+GGG | + | chr8_2:9524588-9524607 | None:intergenic | 40.0% |
TACCCTATGAAGCACAAACA+TGG | - | chr8_2:9524600-9524619 | Msa1232920:CDS | 40.0% | |
GTCCATGTTTGTGCTTCATA+GGG | + | chr8_2:9524605-9524624 | None:intergenic | 40.0% | |
TGTCCATGTTTGTGCTTCAT+AGG | + | chr8_2:9524606-9524625 | None:intergenic | 40.0% | |
CTCACCAGATGCTTAACTAA+GGG | - | chr8_2:9524757-9524776 | Msa1232920:CDS | 40.0% | |
GTAACCCTTAGTTAAGCATC+TGG | + | chr8_2:9524764-9524783 | None:intergenic | 40.0% | |
TGAAGGATACTTTGCACAGA+AGG | - | chr8_2:9525762-9525781 | Msa1232920:five_prime_UTR | 40.0% | |
GATACTTTGCACAGAAGGTT+TGG | - | chr8_2:9525767-9525786 | Msa1232920:five_prime_UTR | 40.0% | |
GTGAAGGTTAACCCAACATT+TGG | - | chr8_2:9525806-9525825 | Msa1232920:five_prime_UTR | 40.0% | |
! | TTTGGTGACATGTCATCGGT+CGG | + | chr8_2:9521901-9521920 | None:intergenic | 45.0% |
AACCGGTGGTTTATGAAGCA+CGG | + | chr8_2:9521967-9521986 | None:intergenic | 45.0% | |
TTCAGTGTGTGTTGTGAACC+TGG | - | chr8_2:9522481-9522500 | Msa1232920:intron | 45.0% | |
GTGTTCTATCGAAAAGGTGG+AGG | - | chr8_2:9522689-9522708 | Msa1232920:intron | 45.0% | |
CAGCAAATCATTCACTCGGT+TGG | - | chr8_2:9522747-9522766 | Msa1232920:intron | 45.0% | |
!! | CTTTGGGGTAGATTATGCGA+CGG | - | chr8_2:9522846-9522865 | Msa1232920:intron | 45.0% |
GGCAACGGAATTTCAATTGG+TGG | + | chr8_2:9522964-9522983 | None:intergenic | 45.0% | |
!! | ACTCGAGTCTTTTCAAGGAC+TGG | + | chr8_2:9522999-9523018 | None:intergenic | 45.0% |
GAGAAGAGACGTTTGTAGGT+TGG | + | chr8_2:9523032-9523051 | None:intergenic | 45.0% | |
TGGATTTGAAAAGTCGGCTG+CGG | + | chr8_2:9523112-9523131 | None:intergenic | 45.0% | |
TGCCCTATGTTATACGGGAA+TGG | - | chr8_2:9523194-9523213 | Msa1232920:intron | 45.0% | |
GCTCCATTCCCGTATAACAT+AGG | + | chr8_2:9523200-9523219 | None:intergenic | 45.0% | |
CTATACCGCAACTGTACAGA+AGG | + | chr8_2:9523592-9523611 | None:intergenic | 45.0% | |
TGCGGAAGTAGGCAGTTATA+TGG | + | chr8_2:9523873-9523892 | None:intergenic | 45.0% | |
CTACATGCTGAGAGCAATTG+CGG | + | chr8_2:9523891-9523910 | None:intergenic | 45.0% | |
ACCCAATAGGCTTCAAAGTC+GGG | - | chr8_2:9524219-9524238 | Msa1232920:CDS | 45.0% | |
!! | ACCCGACTTTGAAGCCTATT+GGG | + | chr8_2:9524223-9524242 | None:intergenic | 45.0% |
!! | AACCCGACTTTGAAGCCTAT+TGG | + | chr8_2:9524224-9524243 | None:intergenic | 45.0% |
! | CATAGGGTATCCCTATCTGT+TGG | + | chr8_2:9524589-9524608 | None:intergenic | 45.0% |
TGAAGCACAAACATGGACAC+CGG | - | chr8_2:9524607-9524626 | Msa1232920:CDS | 45.0% | |
CCTTAGTTAAGCATCTGGTG+AGG | + | chr8_2:9524759-9524778 | None:intergenic | 45.0% | |
CCTCACCAGATGCTTAACTA+AGG | - | chr8_2:9524756-9524775 | Msa1232920:CDS | 45.0% | |
! | GTACTTTTATGTCGTGCCTG+TGG | - | chr8_2:9525531-9525550 | Msa1232920:intron | 45.0% |
! | GTTTGGCTTATGCATTGCTG+AGG | - | chr8_2:9525784-9525803 | Msa1232920:five_prime_UTR | 45.0% |
CTTATGCATTGCTGAGGTGA+AGG | - | chr8_2:9525790-9525809 | Msa1232920:five_prime_UTR | 45.0% | |
ATGAGAGAAAAACGGGGTAC+TGG | - | chr8_2:9526112-9526131 | Msa1232920:five_prime_UTR | 45.0% | |
! | ACACCTTTGATCGGAAGTGC+CGG | + | chr8_2:9521876-9521895 | None:intergenic | 50.0% |
GTCCGTGCTTCATAAACCAC+CGG | - | chr8_2:9521962-9521981 | Msa1232920:intron | 50.0% | |
! | TTCAATTGGTGGACAGCCAG+AGG | + | chr8_2:9522953-9522972 | None:intergenic | 50.0% |
TTTGAAAAGTCGGCTGCGGT+AGG | + | chr8_2:9523108-9523127 | None:intergenic | 50.0% | |
! | TTATACGGGAATGGAGCGTC+TGG | - | chr8_2:9523203-9523222 | Msa1232920:intron | 50.0% |
! | CTCAAAGAAGGCACAAGGTG+TGG | + | chr8_2:9523418-9523437 | None:intergenic | 50.0% |
CTGAGAGCAATTGCGGAAGT+AGG | + | chr8_2:9523884-9523903 | None:intergenic | 50.0% | |
CGGTCGGACACACCTTTGAT+CGG | + | chr8_2:9521885-9521904 | None:intergenic | 55.0% | |
TTGTGTTGCGACAGGACACC+AGG | - | chr8_2:9522588-9522607 | Msa1232920:intron | 55.0% | |
AATCTCCGGGCCAAAACCTC+TGG | - | chr8_2:9522934-9522953 | Msa1232920:intron | 55.0% | |
!! | TGGTGGACAGCCAGAGGTTT+TGG | + | chr8_2:9522947-9522966 | None:intergenic | 55.0% |
GTGTCTAACACCGACACACG+TGG | + | chr8_2:9524676-9524695 | None:intergenic | 55.0% | |
!! | TCGGTGTTAGACACTGCACG+TGG | - | chr8_2:9524682-9524701 | Msa1232920:CDS | 55.0% |
! | GCATGCACGCGCGTTGACAA+CGG | + | chr8_2:9521452-9521471 | None:intergenic | 60.0% |
! | GCACCGGCACTTCCGATCAA+AGG | - | chr8_2:9521870-9521889 | Msa1232920:intron | 60.0% |
TTGCGACAGGACACCAGGAC+AGG | - | chr8_2:9522593-9522612 | Msa1232920:intron | 60.0% | |
ACAGGACACCAGGACAGGCT+AGG | - | chr8_2:9522598-9522617 | Msa1232920:intron | 60.0% | |
GCATGTCACCTAGCCTGTCC+TGG | + | chr8_2:9522609-9522628 | None:intergenic | 60.0% | |
!! | GACAGCCAGAGGTTTTGGCC+CGG | + | chr8_2:9522942-9522961 | None:intergenic | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8_2 | gene | 9521439 | 9526147 | 9521439 | ID=Msa1232920;Name=Msa1232920 |
chr8_2 | mRNA | 9521439 | 9526147 | 9521439 | ID=Msa1232920-mRNA-1;Parent=Msa1232920;Name=Msa1232920-mRNA-1;_AED=0.03;_eAED=0.03;_QI=589|1|1|1|0.25|0|5|345|425 |
chr8_2 | exon | 9521439 | 9521527 | 9521439 | ID=Msa1232920-mRNA-1:exon:3780;Parent=Msa1232920-mRNA-1 |
chr8_2 | exon | 9521576 | 9521828 | 9521576 | ID=Msa1232920-mRNA-1:exon:3779;Parent=Msa1232920-mRNA-1 |
chr8_2 | exon | 9523650 | 9523829 | 9523650 | ID=Msa1232920-mRNA-1:exon:3778;Parent=Msa1232920-mRNA-1 |
chr8_2 | exon | 9523981 | 9525217 | 9523981 | ID=Msa1232920-mRNA-1:exon:3777;Parent=Msa1232920-mRNA-1 |
chr8_2 | exon | 9525695 | 9526147 | 9525695 | ID=Msa1232920-mRNA-1:exon:3776;Parent=Msa1232920-mRNA-1 |
chr8_2 | five_prime_UTR | 9525695 | 9526147 | 9525695 | ID=Msa1232920-mRNA-1:five_prime_utr;Parent=Msa1232920-mRNA-1 |
chr8_2 | five_prime_UTR | 9525082 | 9525217 | 9525082 | ID=Msa1232920-mRNA-1:five_prime_utr;Parent=Msa1232920-mRNA-1 |
chr8_2 | CDS | 9523981 | 9525081 | 9523981 | ID=Msa1232920-mRNA-1:cds;Parent=Msa1232920-mRNA-1 |
chr8_2 | CDS | 9523653 | 9523829 | 9523653 | ID=Msa1232920-mRNA-1:cds;Parent=Msa1232920-mRNA-1 |
chr8_2 | three_prime_UTR | 9523650 | 9523652 | 9523650 | ID=Msa1232920-mRNA-1:three_prime_utr;Parent=Msa1232920-mRNA-1 |
chr8_2 | three_prime_UTR | 9521576 | 9521828 | 9521576 | ID=Msa1232920-mRNA-1:three_prime_utr;Parent=Msa1232920-mRNA-1 |
chr8_2 | three_prime_UTR | 9521439 | 9521527 | 9521439 | ID=Msa1232920-mRNA-1:three_prime_utr;Parent=Msa1232920-mRNA-1 |
Gene Sequence |
Protein sequence |