AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0568800

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0568800 MtrunA17_Chr8g0383741 77.258 299 24 9 1 295 1 259 8.00e-129 367
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 65 sgRNAs with CRISPR-Local

Find 391 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTCAGGTGCAATATCATTT+TGG 0.207097 4_1:+70430820 None:intergenic
GAAATGTCACACAGCATATT+TGG 0.213635 4_1:+70430416 None:intergenic
TGTAGTATCCTTTGGTGTTC+TGG 0.255404 4_1:+70436081 None:intergenic
ACAAGAATCTACAGTTATTA+AGG 0.256810 4_1:-70430997 Msa0568800:CDS
TCTTTAACCTGTTCAGGTTC+AGG 0.278032 4_1:+70435845 None:intergenic
GTGTCTTCTTTAACCTGTTC+AGG 0.281388 4_1:+70435839 None:intergenic
TATTGCTGATCAGTATTAAA+AGG 0.304496 4_1:-70430310 Msa0568800:three_prime_UTR
GTAGATTCTTGTTCTGTAGA+TGG 0.312343 4_1:+70431008 None:intergenic
CAATGTAATAATAAAGAAAA+AGG 0.333360 4_1:+70430381 None:intergenic
GTCTTCACCACAGTTACTTC+AGG 0.341416 4_1:+70430804 None:intergenic
AGAACTGCGATTGAAAGAAA+TGG 0.359351 4_1:-70435924 Msa0568800:exon
TGTTATTTCTCTAGCTCTTG+TGG 0.407724 4_1:-70430358 Msa0568800:three_prime_UTR
GGAGATTCATGTTTCAAAGT+TGG 0.408662 4_1:+70431074 None:intergenic
CACAGCATATTTGGTTGGTA+AGG 0.422999 4_1:+70430425 None:intergenic
TTCACAACAGTTTCTTCAGC+TGG 0.423038 4_1:+70430849 None:intergenic
AGTTTGTTTGTAGTATCCTT+TGG 0.426733 4_1:+70436073 None:intergenic
GAACTGCGATTGAAAGAAAT+GGG 0.434567 4_1:-70435923 Msa0568800:exon
TTCTGTCTTCACAATCTCTT+CGG 0.442450 4_1:+70430923 None:intergenic
TTCTCTTCTATGCTAGATGT+TGG 0.446295 4_1:+70430597 None:intergenic
ATTAGAAACAGAGAAACCTT+TGG 0.449166 4_1:-70431117 Msa0568800:CDS
ATTTGATTACTCTGTTGTCT+TGG 0.452986 4_1:-70436106 Msa0568800:five_prime_UTR
AAACCAAAGGTTACGAAGGA+TGG 0.459100 4_1:-70435887 Msa0568800:CDS
GAAGGCACCTGAACCTGAAC+AGG 0.460385 4_1:-70435852 Msa0568800:CDS
TTAATCCAACGGTCTACAAC+CGG 0.472549 4_1:-70430502 Msa0568800:exon
GTCTAGTGTTTGAAACGAAA+AGG 0.478027 4_1:+70436032 None:intergenic
ACTGTCAGCATCAGAAGCCT+TGG 0.483191 4_1:+70430542 None:intergenic
ATCACTTTCTCCGCAGGTGG+AGG 0.497231 4_1:+70430669 None:intergenic
ATCTGTGGAGAACAAAATAG+TGG 0.502395 4_1:-70430622 Msa0568800:CDS
AGTGTGAGAAAAGTAGAAGA+AGG 0.506606 4_1:+70435972 None:intergenic
TAATACTGATCAGCAATAGC+AGG 0.510622 4_1:+70430315 None:intergenic
AAGCTTGTTGTTCAACAAAG+AGG 0.514250 4_1:-70435705 Msa0568800:intron
AGTTATTAAGGTTGATGTTG+AGG 0.515319 4_1:-70430985 Msa0568800:CDS
AACCAAAGGTTACGAAGGAT+GGG 0.516776 4_1:-70435886 Msa0568800:CDS
TTGAAATCAGAGAGAGAATG+AGG 0.530255 4_1:+70436008 None:intergenic
TCAATCACTTTCTCCGCAGG+TGG 0.530836 4_1:+70430666 None:intergenic
TGCAGCCGGTTGTAGACCGT+TGG 0.535078 4_1:+70430497 None:intergenic
ACTTCAATCACTTTCTCCGC+AGG 0.536439 4_1:+70430663 None:intergenic
TTGCAGCTACACGGTGCAGC+CGG 0.538459 4_1:+70430483 None:intergenic
TTTAACAAATGCAGAATCTG+TGG 0.554816 4_1:-70430637 Msa0568800:CDS
AGAAGGTGAGAAAGCTTCAG+AGG 0.560763 4_1:-70430772 Msa0568800:CDS
AGAAACAGAGAAACCTTTGG+AGG 0.576894 4_1:-70431114 Msa0568800:CDS
TGTCACACAGCATATTTGGT+TGG 0.579475 4_1:+70430420 None:intergenic
GACTATTCTCATTGAAAATG+TGG 0.591672 4_1:-70430697 Msa0568800:CDS
ACCAAAGGTTACGAAGGATG+GGG 0.594184 4_1:-70435885 Msa0568800:CDS
GCTTCTATCTCTTAATCCAA+CGG 0.597784 4_1:-70430513 Msa0568800:exon
TGAAATCAGAGAGAGAATGA+GGG 0.613973 4_1:+70436009 None:intergenic
GAATGAAGATACAATTACAA+AGG 0.619093 4_1:-70431192 Msa0568800:CDS
CACTGTTGAAACCAAAGTGG+AGG 0.620060 4_1:-70435819 Msa0568800:CDS
TATTCTCATTGAAAATGTGG+TGG 0.622958 4_1:-70430694 Msa0568800:CDS
TCTTGGTGCCAGAACACCAA+AGG 0.627447 4_1:-70436089 Msa0568800:five_prime_UTR
TGCGGAGAAAGTGATTGAAG+TGG 0.637663 4_1:-70430661 Msa0568800:CDS
AACTAAACCAAAGGTTACGA+AGG 0.648382 4_1:-70435891 Msa0568800:CDS
GGGTTGTGCAACTAAACCAA+AGG 0.654419 4_1:-70435900 Msa0568800:CDS
TGGGGTAGAGCATATATCCA+AGG 0.654752 4_1:-70430559 Msa0568800:CDS
TGTGGTGGTTCCTCCACCTG+CGG 0.658290 4_1:-70430679 Msa0568800:CDS
ACGACGACTTTGCAGCTACA+CGG 0.662499 4_1:+70430474 None:intergenic
AGACACTGTTGAAACCAAAG+TGG 0.670371 4_1:-70435822 Msa0568800:CDS
GAAATCAGAGAGAGAATGAG+GGG 0.677115 4_1:+70436010 None:intergenic
AACTGCGATTGAAAGAAATG+GGG 0.679437 4_1:-70435922 Msa0568800:exon
CAAGAGCAATTGTTGCAGAG+TGG 0.680159 4_1:-70435788 Msa0568800:CDS
GTGAAGACAGAAACACAAGA+AGG 0.686055 4_1:-70430789 Msa0568800:CDS
CCAAAGGTTACGAAGGATGG+GGG 0.695094 4_1:-70435884 Msa0568800:CDS
ACTGCGATTGAAAGAAATGG+GGG 0.707466 4_1:-70435921 Msa0568800:exon
TATTGCACCTGAAGTAACTG+TGG 0.731781 4_1:-70430811 Msa0568800:CDS
CTGCGATTGAAAGAAATGGG+GGG 0.733842 4_1:-70435920 Msa0568800:exon

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTCTAACAAAAATTAA+AGG - chr4_1:70432961-70432980 Msa0568800:intron 10.0%
!! TCAATTTAAAAAATATCAAA+CGG - chr4_1:70433462-70433481 Msa0568800:intron 10.0%
!! TCATATTATTAAAATAGATA+TGG - chr4_1:70433897-70433916 Msa0568800:intron 10.0%
!!! CATTATTTATTTGTTAAGAA+GGG + chr4_1:70432393-70432412 None:intergenic 15.0%
!!! TCATTATTTATTTGTTAAGA+AGG + chr4_1:70432394-70432413 None:intergenic 15.0%
!!! AACCAATTAAATTTGTTATT+TGG - chr4_1:70432538-70432557 Msa0568800:intron 15.0%
!! AAATAAAAGGAATATTGTTA+GGG + chr4_1:70432665-70432684 None:intergenic 15.0%
!! ATTGCTAAAAATTAAAACAT+TGG - chr4_1:70433177-70433196 Msa0568800:intron 15.0%
!! AAAAAAATGTAAACAGATAT+GGG + chr4_1:70433709-70433728 None:intergenic 15.0%
!! AAAAAAAATGTAAACAGATA+TGG + chr4_1:70433710-70433729 None:intergenic 15.0%
!! ATTATTAAAATAGATATGGT+TGG - chr4_1:70433901-70433920 Msa0568800:intron 15.0%
!!! GTTTCTTTTACTATAAATAT+AGG + chr4_1:70434471-70434490 None:intergenic 15.0%
!! CAATGTAATAATAAAGAAAA+AGG + chr4_1:70436029-70436048 None:intergenic 15.0%
!!! CAAACCTTTTTTTTTTTCAT+AGG - chr4_1:70430867-70430886 Msa0568800:CDS 20.0%
!! GAAATTCTTAAAATTGATCT+TGG - chr4_1:70431175-70431194 Msa0568800:CDS 20.0%
!! GTATGAAAATGAGTTTATAT+GGG - chr4_1:70431442-70431461 Msa0568800:intron 20.0%
!! ATATGAAGTCACAATATTTA+AGG + chr4_1:70431694-70431713 None:intergenic 20.0%
!!! GTTGTGAACTTTAATTATTT+TGG - chr4_1:70432085-70432104 Msa0568800:intron 20.0%
!!! AAAGAGTTTTTATCAAGAAA+AGG - chr4_1:70432511-70432530 Msa0568800:intron 20.0%
!!! CAATTAAATTTGTTATTTGG+CGG - chr4_1:70432541-70432560 Msa0568800:intron 20.0%
!! GAAATAAAAGGAATATTGTT+AGG + chr4_1:70432666-70432685 None:intergenic 20.0%
!! CATAAATTAAATGTAATGCA+TGG - chr4_1:70432805-70432824 Msa0568800:intron 20.0%
!!! TTTTATTCTTGAAGAATTCT+TGG - chr4_1:70433130-70433149 Msa0568800:intron 20.0%
!!! GTTCAAATCACTTTTTAAAT+TGG - chr4_1:70433434-70433453 Msa0568800:intron 20.0%
!!! TTTTCAGAAACGTATTTTTT+GGG + chr4_1:70434519-70434538 None:intergenic 20.0%
!!! TTTTTCAGAAACGTATTTTT+TGG + chr4_1:70434520-70434539 None:intergenic 20.0%
!!! TTACTTAGTAGTCAATTTTA+AGG - chr4_1:70434885-70434904 Msa0568800:intron 20.0%
!!! ACTAAATTTTTTTCATTCAG+AGG - chr4_1:70435048-70435067 Msa0568800:intron 20.0%
!!! TTTGTTTTTTTCATTTTGAG+TGG + chr4_1:70435244-70435263 None:intergenic 20.0%
!!! AACAAACTGTCGTTTTAAAT+TGG - chr4_1:70430349-70430368 Msa0568800:three_prime_UTR 25.0%
!! CACTTTTACTTTCTTTCTTT+TGG - chr4_1:70430454-70430473 Msa0568800:three_prime_UTR 25.0%
! AACTCGTTTAAATGTATATG+TGG - chr4_1:70430961-70430980 Msa0568800:CDS 25.0%
! GTTTAAATGTATATGTGGAT+TGG - chr4_1:70430966-70430985 Msa0568800:CDS 25.0%
! AAAATGTCCTAATGTATGTT+TGG - chr4_1:70431004-70431023 Msa0568800:CDS 25.0%
! GGTATGAAAATGAGTTTATA+TGG - chr4_1:70431441-70431460 Msa0568800:intron 25.0%
! GTAAATTTGTGAAGTTAACA+TGG + chr4_1:70431795-70431814 None:intergenic 25.0%
! GTAAATTTGTGAAGTTAACA+TGG + chr4_1:70431795-70431814 None:intergenic 25.0%
! ACAAAAGAAAAAATTCACCA+AGG + chr4_1:70431967-70431986 None:intergenic 25.0%
! TGTAGGATTATGAAACTAAA+TGG + chr4_1:70432023-70432042 None:intergenic 25.0%
!!! GAACTTTAATTATTTTGGCA+AGG - chr4_1:70432090-70432109 Msa0568800:intron 25.0%
! AGAATCTTCGAAAACAAATT+AGG + chr4_1:70432120-70432139 None:intergenic 25.0%
! GTTTGAATATGACTATAAGA+GGG - chr4_1:70432350-70432369 Msa0568800:intron 25.0%
! TTTGAATATGACTATAAGAG+GGG - chr4_1:70432351-70432370 Msa0568800:intron 25.0%
! TATAATAACGACAAGAAAAG+TGG + chr4_1:70432448-70432467 None:intergenic 25.0%
! CGCCAAATAACAAATTTAAT+TGG + chr4_1:70432543-70432562 None:intergenic 25.0%
!!! TTCCTTTTATTTCCCAAATT+TGG - chr4_1:70432673-70432692 Msa0568800:intron 25.0%
! TACCAAATTTGGGAAATAAA+AGG + chr4_1:70432678-70432697 None:intergenic 25.0%
!!! CTTTTTCAACTACCAAATTT+GGG + chr4_1:70432688-70432707 None:intergenic 25.0%
!!! ACTTTTTCAACTACCAAATT+TGG + chr4_1:70432689-70432708 None:intergenic 25.0%
! TTGAATCATTGACAAAGAAA+AGG - chr4_1:70432745-70432764 Msa0568800:intron 25.0%
!!! AAAATTTTTCAAGACACATG+TGG - chr4_1:70433015-70433034 Msa0568800:intron 25.0%
! GCTAAAAATTAAAACATTGG+CGG - chr4_1:70433180-70433199 Msa0568800:intron 25.0%
! TTGAAAATTTAGTAGACACA+AGG - chr4_1:70433248-70433267 Msa0568800:intron 25.0%
! TGAAAATTTAGTAGACACAA+GGG - chr4_1:70433249-70433268 Msa0568800:intron 25.0%
!!! AATTGCTCTTTTTTTTGTGA+TGG - chr4_1:70433304-70433323 Msa0568800:intron 25.0%
! AACAAGTAATGTGATAAAAG+AGG + chr4_1:70433788-70433807 None:intergenic 25.0%
! GTTCTATTCACTTTGATTAT+TGG + chr4_1:70434072-70434091 None:intergenic 25.0%
! TTACTCATCATATAGTGAAA+CGG + chr4_1:70434215-70434234 None:intergenic 25.0%
!!! CAGATTTGGTACAATTTTAT+GGG + chr4_1:70434495-70434514 None:intergenic 25.0%
! ATCAATTAAGTTAGACTAGT+TGG + chr4_1:70434844-70434863 None:intergenic 25.0%
!! TATTGATATGAAGTATCCAT+CGG - chr4_1:70434960-70434979 Msa0568800:intron 25.0%
! GTTAAAATGAGATTCATACA+TGG + chr4_1:70435167-70435186 None:intergenic 25.0%
! GAATGAAGATACAATTACAA+AGG - chr4_1:70435215-70435234 Msa0568800:intron 25.0%
! AAATGAAAAAAACAAAGCTG+AGG - chr4_1:70435248-70435267 Msa0568800:intron 25.0%
! ACAAGAATCTACAGTTATTA+AGG - chr4_1:70435410-70435429 Msa0568800:intron 25.0%
!!! GATGATTTTTCTAGTTTGAT+TGG + chr4_1:70435687-70435706 None:intergenic 25.0%
! AGAAAAATCATGTTGATGTT+GGG - chr4_1:70435829-70435848 Msa0568800:CDS 25.0%
! TATTGCTGATCAGTATTAAA+AGG - chr4_1:70436097-70436116 Msa0568800:five_prime_UTR 25.0%
ATTTGATTACTCTGTTGTCT+TGG - chr4_1:70430301-70430320 Msa0568800:three_prime_UTR 30.0%
! AGTTTGTTTGTAGTATCCTT+TGG + chr4_1:70430337-70430356 None:intergenic 30.0%
! CAAATTTTTATGCTGCATAG+AGG - chr4_1:70430829-70430848 Msa0568800:CDS 30.0%
AACCTTAATGGCAAGTAAAA+AGG - chr4_1:70430903-70430922 Msa0568800:CDS 30.0%
AATTCCTCCAAACATACATT+AGG + chr4_1:70431014-70431033 None:intergenic 30.0%
! TTGGTGAAAAAGTTTAAAGC+AGG - chr4_1:70431194-70431213 Msa0568800:CDS 30.0%
! TGGTGAAAAAGTTTAAAGCA+GGG - chr4_1:70431195-70431214 Msa0568800:intron 30.0%
! CACATTCCAAATTCTAAGAA+GGG - chr4_1:70431230-70431249 Msa0568800:intron 30.0%
TGTAGTAGAATGTCAATTCT+TGG - chr4_1:70431306-70431325 Msa0568800:intron 30.0%
TATTATATGATCACCCGATA+TGG - chr4_1:70431358-70431377 Msa0568800:intron 30.0%
ATTATATGATCACCCGATAT+GGG - chr4_1:70431359-70431378 Msa0568800:intron 30.0%
!!! CACTTTACAAACTAGTTTTG+TGG - chr4_1:70431477-70431496 Msa0568800:intron 30.0%
ATACACTCTCACTATTGATA+CGG - chr4_1:70431543-70431562 Msa0568800:intron 30.0%
!! TTTTATGGATTAATGCCGAT+TGG + chr4_1:70431573-70431592 None:intergenic 30.0%
! GCGTTGAAATGTAACTTTTA+TGG + chr4_1:70431588-70431607 None:intergenic 30.0%
TTTGTCGAAACAAACTAATG+AGG - chr4_1:70431633-70431652 Msa0568800:intron 30.0%
AAAGTCATTACGACTAAACA+TGG + chr4_1:70431668-70431687 None:intergenic 30.0%
TTAAGACAATTGCTAGAGTA+GGG + chr4_1:70431770-70431789 None:intergenic 30.0%
ATTAAGACAATTGCTAGAGT+AGG + chr4_1:70431771-70431790 None:intergenic 30.0%
ACTACAGAAAAAATTCACCA+AGG + chr4_1:70431836-70431855 None:intergenic 30.0%
TTAAGACAATTGCTAGAGTA+GGG + chr4_1:70431770-70431789 None:intergenic 30.0%
ATTAAGACAATTGCTAGAGT+AGG + chr4_1:70431771-70431790 None:intergenic 30.0%
TAGCGGTTAACAAAATCAAT+GGG + chr4_1:70432210-70432229 None:intergenic 30.0%
ATAGCGGTTAACAAAATCAA+TGG + chr4_1:70432211-70432230 None:intergenic 30.0%
GTTACAAACATCATGAATGA+TGG - chr4_1:70432279-70432298 Msa0568800:intron 30.0%
CGTTTGAATATGACTATAAG+AGG - chr4_1:70432349-70432368 Msa0568800:intron 30.0%
! ACAAGAAAAGTGGTTTTCTT+GGG + chr4_1:70432438-70432457 None:intergenic 30.0%
! GAGGTAATGGTGTATAATTA+AGG - chr4_1:70432573-70432592 Msa0568800:intron 30.0%
!! AGTTGCATGATTTGTTGATT+TGG - chr4_1:70432881-70432900 Msa0568800:intron 30.0%
TTTAGCAATGCTATATCTCT+AGG + chr4_1:70433166-70433185 None:intergenic 30.0%
AAAACTGTTGTCCAAAAAAG+GGG + chr4_1:70433216-70433235 None:intergenic 30.0%
GAAAACTGTTGTCCAAAAAA+GGG + chr4_1:70433217-70433236 None:intergenic 30.0%
TGAAAACTGTTGTCCAAAAA+AGG + chr4_1:70433218-70433237 None:intergenic 30.0%
GAAAATTTAGTAGACACAAG+GGG - chr4_1:70433250-70433269 Msa0568800:intron 30.0%
GACAATGCATAATACATACA+AGG + chr4_1:70433349-70433368 None:intergenic 30.0%
AACGGTAACTAACTATTGTT+CGG - chr4_1:70433480-70433499 Msa0568800:intron 30.0%
TGATTACTGTCAATTGTCTT+AGG - chr4_1:70433552-70433571 Msa0568800:intron 30.0%
AATATCAGATTCTGACATCA+AGG + chr4_1:70433635-70433654 None:intergenic 30.0%
TTGATGTCAGAATCTGATAT+TGG - chr4_1:70433634-70433653 Msa0568800:intron 30.0%
TGATGTCAGAATCTGATATT+GGG - chr4_1:70433635-70433654 Msa0568800:intron 30.0%
AGATAGTAGATTGGAATGTT+TGG + chr4_1:70433662-70433681 None:intergenic 30.0%
!! ATCCTCTCTTTTTGTTTGTA+AGG - chr4_1:70433840-70433859 Msa0568800:intron 30.0%
! CGTGAGCTTTTATCAAATAA+TGG - chr4_1:70433938-70433957 Msa0568800:intron 30.0%
! TTGTTTAGAGTTTGTCTCTT+TGG + chr4_1:70434374-70434393 None:intergenic 30.0%
!! CCAGATTTGGTACAATTTTA+TGG + chr4_1:70434496-70434515 None:intergenic 30.0%
CCATAAAATTGTACCAAATC+TGG - chr4_1:70434493-70434512 Msa0568800:intron 30.0%
AAAATAACAGCACGCAAAAT+CGG - chr4_1:70434536-70434555 Msa0568800:intron 30.0%
! TGTTTGCTGAAAGTACAAAT+CGG + chr4_1:70434655-70434674 None:intergenic 30.0%
! CTTTCAGCAAACATCAATTT+TGG - chr4_1:70434662-70434681 Msa0568800:intron 30.0%
TTGTGAAAGTGACTCAAAAT+TGG + chr4_1:70434698-70434717 None:intergenic 30.0%
!! ACTAGTAAGTTGATTGATCA+TGG + chr4_1:70434805-70434824 None:intergenic 30.0%
TTAATTATTGAAGAAGCCGA+TGG + chr4_1:70434979-70434998 None:intergenic 30.0%
GAAAAAAATTTAGTTGCGAG+AGG + chr4_1:70435042-70435061 None:intergenic 30.0%
TACATGGATAGAATTTGTGT+GGG + chr4_1:70435151-70435170 None:intergenic 30.0%
ATACATGGATAGAATTTGTG+TGG + chr4_1:70435152-70435171 None:intergenic 30.0%
!!! TTGTTTTTAGTTTCCTGAGT+TGG + chr4_1:70435375-70435394 None:intergenic 30.0%
!! AGTTATTAAGGTTGATGTTG+AGG - chr4_1:70435422-70435441 Msa0568800:intron 30.0%
!! GTGATTTGATTTTGCAATGA+AGG + chr4_1:70435453-70435472 None:intergenic 30.0%
GACTATTCTCATTGAAAATG+TGG - chr4_1:70435710-70435729 Msa0568800:CDS 30.0%
TATTCTCATTGAAAATGTGG+TGG - chr4_1:70435713-70435732 Msa0568800:CDS 30.0%
TTTAACAAATGCAGAATCTG+TGG - chr4_1:70435770-70435789 Msa0568800:CDS 30.0%
GAGAAAAATCATGTTGATGT+TGG - chr4_1:70435828-70435847 Msa0568800:CDS 30.0%
GAAAAATCATGTTGATGTTG+GGG - chr4_1:70435830-70435849 Msa0568800:CDS 30.0%
! GTCTAGTGTTTGAAACGAAA+AGG + chr4_1:70430378-70430397 None:intergenic 35.0%
TGAAATCAGAGAGAGAATGA+GGG + chr4_1:70430401-70430420 None:intergenic 35.0%
TTGAAATCAGAGAGAGAATG+AGG + chr4_1:70430402-70430421 None:intergenic 35.0%
AGTGTGAGAAAAGTAGAAGA+AGG + chr4_1:70430438-70430457 None:intergenic 35.0%
AGAACTGCGATTGAAAGAAA+TGG - chr4_1:70430483-70430502 Msa0568800:three_prime_UTR 35.0%
GAACTGCGATTGAAAGAAAT+GGG - chr4_1:70430484-70430503 Msa0568800:three_prime_UTR 35.0%
AACTGCGATTGAAAGAAATG+GGG - chr4_1:70430485-70430504 Msa0568800:three_prime_UTR 35.0%
AACTAAACCAAAGGTTACGA+AGG - chr4_1:70430516-70430535 Msa0568800:exon 35.0%
!! AAGCTTGTTGTTCAACAAAG+AGG - chr4_1:70430702-70430721 Msa0568800:CDS 35.0%
! ATTTTTATGCTGCATAGAGG+AGG - chr4_1:70430832-70430851 Msa0568800:CDS 35.0%
GGGGCCTATGAAAAAAAAAA+AGG + chr4_1:70430874-70430893 None:intergenic 35.0%
CATTAAGGTTTGTATCAAGG+GGG + chr4_1:70430893-70430912 None:intergenic 35.0%
CCATTAAGGTTTGTATCAAG+GGG + chr4_1:70430894-70430913 None:intergenic 35.0%
GCCATTAAGGTTTGTATCAA+GGG + chr4_1:70430895-70430914 None:intergenic 35.0%
TGCCATTAAGGTTTGTATCA+AGG + chr4_1:70430896-70430915 None:intergenic 35.0%
! GTCCTTTTTACTTGCCATTA+AGG + chr4_1:70430908-70430927 None:intergenic 35.0%
ATGTCCTAATGTATGTTTGG+AGG - chr4_1:70431007-70431026 Msa0568800:CDS 35.0%
CTAACCTATCCAAATTGACA+CGG - chr4_1:70431066-70431085 Msa0568800:CDS 35.0%
! GAATCGAACATGAGATTTTG+AGG - chr4_1:70431090-70431109 Msa0568800:CDS 35.0%
ACGATCAAGCTAACTCAAAT+GGG - chr4_1:70431142-70431161 Msa0568800:CDS 35.0%
! GGTGAAAAAGTTTAAAGCAG+GGG - chr4_1:70431196-70431215 Msa0568800:intron 35.0%
! GCACATTCCAAATTCTAAGA+AGG - chr4_1:70431229-70431248 Msa0568800:intron 35.0%
TCTCATCCCTTCTTAGAATT+TGG + chr4_1:70431239-70431258 None:intergenic 35.0%
ATCTATTTGATCACCCACTA+TGG - chr4_1:70431269-70431288 Msa0568800:intron 35.0%
TCTATTTGATCACCCACTAT+GGG - chr4_1:70431270-70431289 Msa0568800:intron 35.0%
TTTAGTAGATGCCAATGCTT+AGG - chr4_1:70431392-70431411 Msa0568800:intron 35.0%
!! GGGCGAGTTGATAAAATATA+AGG - chr4_1:70431420-70431439 Msa0568800:intron 35.0%
TATTGATACGGTAGTCCAAT+CGG - chr4_1:70431555-70431574 Msa0568800:intron 35.0%
!!! GAGTAGGGAAGTGTTTTATA+TGG + chr4_1:70431755-70431774 None:intergenic 35.0%
TACCCAACAAAAGTTTACCT+TGG - chr4_1:70431816-70431835 Msa0568800:intron 35.0%
! CACCAAGGTAAACTTTTGTT+GGG + chr4_1:70431821-70431840 None:intergenic 35.0%
! TCACCAAGGTAAACTTTTGT+TGG + chr4_1:70431822-70431841 None:intergenic 35.0%
!!! GAGTAGGGAAGTGTTTTATA+TGG + chr4_1:70431755-70431774 None:intergenic 35.0%
TACCCAACAAAAGTTTACCT+TGG - chr4_1:70431816-70431835 Msa0568800:intron 35.0%
! CACCAAGGTAAACTTTTGTT+GGG + chr4_1:70431821-70431840 None:intergenic 35.0%
! TCACCAAGGTAAACTTTTGT+TGG + chr4_1:70431822-70431841 None:intergenic 35.0%
TACATCATGCACTAAATGCA+TGG - chr4_1:70432149-70432168 Msa0568800:intron 35.0%
ACTAAATGCATGGCAAACAA+AGG - chr4_1:70432159-70432178 Msa0568800:intron 35.0%
TTAACAAAATCAATGGGGGT+GGG + chr4_1:70432204-70432223 None:intergenic 35.0%
AGCGGTTAACAAAATCAATG+GGG + chr4_1:70432209-70432228 None:intergenic 35.0%
TTCATGATGTTTGTAACCGT+GGG + chr4_1:70432276-70432295 None:intergenic 35.0%
ATTCATGATGTTTGTAACCG+TGG + chr4_1:70432277-70432296 None:intergenic 35.0%
! AAGAAAAGTGGTTTTCTTGG+GGG + chr4_1:70432436-70432455 None:intergenic 35.0%
! CAAGAAAAGTGGTTTTCTTG+GGG + chr4_1:70432437-70432456 None:intergenic 35.0%
! GACAAGAAAAGTGGTTTTCT+TGG + chr4_1:70432439-70432458 None:intergenic 35.0%
!! TTGTTATTTGGCGGAAATCA+AGG - chr4_1:70432550-70432569 Msa0568800:intron 35.0%
! TGTTATTTGGCGGAAATCAA+GGG - chr4_1:70432551-70432570 Msa0568800:intron 35.0%
! TGCTCTTAGCATCTTTTCTT+AGG + chr4_1:70432858-70432877 None:intergenic 35.0%
CTATTTGCCACAATTCAAGA+AGG + chr4_1:70433091-70433110 None:intergenic 35.0%
! GACTTTTTGTACCCCTTTTT+TGG - chr4_1:70433202-70433221 Msa0568800:intron 35.0%
CATAATACATACAAGGTACG+AGG + chr4_1:70433342-70433361 None:intergenic 35.0%
ACCTAAGACAGTTGATCTAT+AGG + chr4_1:70433533-70433552 None:intergenic 35.0%
CAATTGTCTTAGGTAACTAC+TGG - chr4_1:70433562-70433581 Msa0568800:intron 35.0%
TTAGGTAACTACTGGTAGTA+AGG - chr4_1:70433570-70433589 Msa0568800:intron 35.0%
ACTACTGGTAGTAAGGAATA+TGG - chr4_1:70433577-70433596 Msa0568800:intron 35.0%
CTACTGGTAGTAAGGAATAT+GGG - chr4_1:70433578-70433597 Msa0568800:intron 35.0%
AGATGGTAGGATAAATATGC+TGG + chr4_1:70433609-70433628 None:intergenic 35.0%
AGCATATTTATCCTACCATC+TGG - chr4_1:70433608-70433627 Msa0568800:intron 35.0%
GCATATTTATCCTACCATCT+GGG - chr4_1:70433609-70433628 Msa0568800:intron 35.0%
! ATATGGGTTATTGTCCTCTA+GGG + chr4_1:70433693-70433712 None:intergenic 35.0%
GACCTTACAAACAAAAAGAG+AGG + chr4_1:70433845-70433864 None:intergenic 35.0%
TCATCGAATTCGCAACAAAA+TGG + chr4_1:70433997-70434016 None:intergenic 35.0%
ACCAATAACAACTTGATGTG+TGG - chr4_1:70434026-70434045 Msa0568800:intron 35.0%
! TCCACACATCAAGTTGTTAT+TGG + chr4_1:70434030-70434049 None:intergenic 35.0%
!!! TCGCTGTTGTTTTCTACTTT+TGG + chr4_1:70434110-70434129 None:intergenic 35.0%
!! AAAGATTTGTTGACCCAGTT+CGG - chr4_1:70434153-70434172 Msa0568800:intron 35.0%
TCATCATATAGTGAAACGGA+GGG + chr4_1:70434211-70434230 None:intergenic 35.0%
GAGTAACGTTACAAAAGAGA+TGG - chr4_1:70434229-70434248 Msa0568800:intron 35.0%
ACTATTAGGATTGAGTCTCT+TGG + chr4_1:70434311-70434330 None:intergenic 35.0%
AATCCTAATAGTGTTTCCCA+AGG - chr4_1:70434319-70434338 Msa0568800:intron 35.0%
!! GTCTCTTTGGAACAAAACTA+GGG + chr4_1:70434361-70434380 None:intergenic 35.0%
!! TGTCTCTTTGGAACAAAACT+AGG + chr4_1:70434362-70434381 None:intergenic 35.0%
GAAAGGCAACAACAAAACTA+GGG + chr4_1:70434398-70434417 None:intergenic 35.0%
AGAAAGGCAACAACAAAACT+AGG + chr4_1:70434399-70434418 None:intergenic 35.0%
AAATAACAGCACGCAAAATC+GGG - chr4_1:70434537-70434556 Msa0568800:intron 35.0%
! CAGTTTGGTACTGGAAAAAT+CGG + chr4_1:70434586-70434605 None:intergenic 35.0%
! TTTGCTGAAAGTACAAATCG+GGG + chr4_1:70434653-70434672 None:intergenic 35.0%
! GTTTGCTGAAAGTACAAATC+GGG + chr4_1:70434654-70434673 None:intergenic 35.0%
AGTGACTCAAAATTGGAGTT+TGG + chr4_1:70434691-70434710 None:intergenic 35.0%
!!! ATGTTTTTAGCATCCTCCAA+AGG + chr4_1:70435309-70435328 None:intergenic 35.0%
GGAGATTCATGTTTCAAAGT+TGG + chr4_1:70435336-70435355 None:intergenic 35.0%
ACATGAATCTCCAAAAACAG+AGG - chr4_1:70435344-70435363 Msa0568800:intron 35.0%
!!! GTTGGTTTTTCCTCTGTTTT+TGG + chr4_1:70435357-70435376 None:intergenic 35.0%
GTAGATTCTTGTTCTGTAGA+TGG + chr4_1:70435402-70435421 None:intergenic 35.0%
TTCTGTCTTCACAATCTCTT+CGG + chr4_1:70435487-70435506 None:intergenic 35.0%
! GAAGTTTTCTTAGCTTCTTC+TGG + chr4_1:70435513-70435532 None:intergenic 35.0%
! CTTCAGGTGCAATATCATTT+TGG + chr4_1:70435590-70435609 None:intergenic 35.0%
ATCTGTGGAGAACAAAATAG+TGG - chr4_1:70435785-70435804 Msa0568800:CDS 35.0%
TTCTCTTCTATGCTAGATGT+TGG + chr4_1:70435813-70435832 None:intergenic 35.0%
GCTTCTATCTCTTAATCCAA+CGG - chr4_1:70435894-70435913 Msa0568800:CDS 35.0%
GAAATGTCACACAGCATATT+TGG + chr4_1:70435994-70436013 None:intergenic 35.0%
!! TGTTATTTCTCTAGCTCTTG+TGG - chr4_1:70436049-70436068 Msa0568800:five_prime_UTR 35.0%
TAATACTGATCAGCAATAGC+AGG + chr4_1:70436095-70436114 None:intergenic 35.0%
!! TGTAGTATCCTTTGGTGTTC+TGG + chr4_1:70430329-70430348 None:intergenic 40.0%
GAAATCAGAGAGAGAATGAG+GGG + chr4_1:70430400-70430419 None:intergenic 40.0%
ACTGCGATTGAAAGAAATGG+GGG - chr4_1:70430486-70430505 Msa0568800:three_prime_UTR 40.0%
AAACCAAAGGTTACGAAGGA+TGG - chr4_1:70430520-70430539 Msa0568800:exon 40.0%
AACCAAAGGTTACGAAGGAT+GGG - chr4_1:70430521-70430540 Msa0568800:CDS 40.0%
! TCTTTAACCTGTTCAGGTTC+AGG + chr4_1:70430565-70430584 None:intergenic 40.0%
GTGTCTTCTTTAACCTGTTC+AGG + chr4_1:70430571-70430590 None:intergenic 40.0%
AGACACTGTTGAAACCAAAG+TGG - chr4_1:70430585-70430604 Msa0568800:CDS 40.0%
!! TTGTTTTTCTGCCTCCACTT+TGG + chr4_1:70430602-70430621 None:intergenic 40.0%
CCCCTTGATACAAACCTTAA+TGG - chr4_1:70430891-70430910 Msa0568800:CDS 40.0%
TTCTCCGTGTCAATTTGGAT+AGG + chr4_1:70431073-70431092 None:intergenic 40.0%
TTCGATTCTCCGTGTCAATT+TGG + chr4_1:70431078-70431097 None:intergenic 40.0%
!! TCGAACATGAGATTTTGAGG+AGG - chr4_1:70431093-70431112 Msa0568800:CDS 40.0%
! TTGAGTTAGCTTGATCGTGT+TGG + chr4_1:70431140-70431159 None:intergenic 40.0%
CACGATCAAGCTAACTCAAA+TGG - chr4_1:70431141-70431160 Msa0568800:CDS 40.0%
CTATTTGATCACCCACTATG+GGG - chr4_1:70431271-70431290 Msa0568800:intron 40.0%
AACTTAAGTGACCCCATAGT+GGG + chr4_1:70431285-70431304 None:intergenic 40.0%
TAACTTAAGTGACCCCATAG+TGG + chr4_1:70431286-70431305 None:intergenic 40.0%
AAACATGAGTGGTCCCATAT+CGG + chr4_1:70431375-70431394 None:intergenic 40.0%
TGGCATCTACTAAACATGAG+TGG + chr4_1:70431386-70431405 None:intergenic 40.0%
TTCAACTTACGCGCACAATT+CGG + chr4_1:70431506-70431525 None:intergenic 40.0%
! GCTTTGTTACTACTGCTTGT+AGG + chr4_1:70432040-70432059 None:intergenic 40.0%
GTTAACAAAATCAATGGGGG+TGG + chr4_1:70432205-70432224 None:intergenic 40.0%
GCGGTTAACAAAATCAATGG+GGG + chr4_1:70432208-70432227 None:intergenic 40.0%
GAGCATGAGAACAATGATAG+CGG + chr4_1:70432227-70432246 None:intergenic 40.0%
GATGGCAAAGTGCAAACAAA+AGG - chr4_1:70432297-70432316 Msa0568800:intron 40.0%
GAATATGACTATAAGAGGGG+TGG - chr4_1:70432354-70432373 Msa0568800:intron 40.0%
!! TGAGTTTGAGTTGACTGTGA+TGG - chr4_1:70432720-70432739 Msa0568800:intron 40.0%
AGCTAAACATGAGTGATGAG+TGG - chr4_1:70432768-70432787 Msa0568800:intron 40.0%
AAACATGAGTGATGAGTGGT+AGG - chr4_1:70432772-70432791 Msa0568800:intron 40.0%
! TGATTTGGAGAGATAGTGAG+AGG - chr4_1:70432896-70432915 Msa0568800:intron 40.0%
GATTTGGAGAGATAGTGAGA+GGG - chr4_1:70432897-70432916 Msa0568800:intron 40.0%
TGTGGCTGAAAAATAGGAAG+TGG + chr4_1:70433068-70433087 None:intergenic 40.0%
! AGAAGGTGTGGCTGAAAAAT+AGG + chr4_1:70433074-70433093 None:intergenic 40.0%
GCGAAAATCACTGCTTGATT+AGG - chr4_1:70433274-70433293 Msa0568800:intron 40.0%
!!! GCTCTTTTTTTTGTGATGGC+CGG - chr4_1:70433308-70433327 Msa0568800:intron 40.0%
!!! CTCTTTTTTTTGTGATGGCC+GGG - chr4_1:70433309-70433328 Msa0568800:intron 40.0%
!!! TCTTTTTTTTGTGATGGCCG+GGG - chr4_1:70433310-70433329 Msa0568800:intron 40.0%
! TGAACTTAGCTCAGTTGGTA+GGG + chr4_1:70433371-70433390 None:intergenic 40.0%
GTAACTAACTATTGTTCGGC+AGG - chr4_1:70433484-70433503 Msa0568800:intron 40.0%
GCCTATAGATCAACTGTCTT+AGG - chr4_1:70433529-70433548 Msa0568800:intron 40.0%
! TATGGGTTATTGTCCTCTAG+GGG + chr4_1:70433692-70433711 None:intergenic 40.0%
! GATATGGGTTATTGTCCTCT+AGG + chr4_1:70433694-70433713 None:intergenic 40.0%
GAAAACAACAGCGAGAGAAA+AGG - chr4_1:70434116-70434135 Msa0568800:intron 40.0%
CTCATCATATAGTGAAACGG+AGG + chr4_1:70434212-70434231 None:intergenic 40.0%
AGGATTGAGTCTCTTGGTTA+CGG + chr4_1:70434305-70434324 None:intergenic 40.0%
TCACCTTGGGAAACACTATT+AGG + chr4_1:70434325-70434344 None:intergenic 40.0%
!! TTTGTGGGTTGATTCACCTT+GGG + chr4_1:70434338-70434357 None:intergenic 40.0%
GGAACAAAACTAGGGTTTGT+GGG + chr4_1:70434353-70434372 None:intergenic 40.0%
TGGAACAAAACTAGGGTTTG+TGG + chr4_1:70434354-70434373 None:intergenic 40.0%
GCTGAAACAAGGGTTTAGAA+AGG + chr4_1:70434415-70434434 None:intergenic 40.0%
AGTGTAAACCTGGAGATAGA+GGG + chr4_1:70434439-70434458 None:intergenic 40.0%
GCATTGTATCAGTGTAAACC+TGG + chr4_1:70434449-70434468 None:intergenic 40.0%
!!! CGTATTTTTTGGGCCAGATT+TGG + chr4_1:70434509-70434528 None:intergenic 40.0%
GACTCAAAATTGGAGTTTGG+AGG + chr4_1:70434688-70434707 None:intergenic 40.0%
ACTTGTCTGACCACCTTTAA+TGG - chr4_1:70435012-70435031 Msa0568800:intron 40.0%
CTTGTCTGACCACCTTTAAT+GGG - chr4_1:70435013-70435032 Msa0568800:intron 40.0%
AACAGAGGAAAAACCAACTC+AGG - chr4_1:70435359-70435378 Msa0568800:intron 40.0%
TTCACAACAGTTTCTTCAGC+TGG + chr4_1:70435561-70435580 None:intergenic 40.0%
TATTGCACCTGAAGTAACTG+TGG - chr4_1:70435596-70435615 Msa0568800:intron 40.0%
GTGAAGACAGAAACACAAGA+AGG - chr4_1:70435618-70435637 Msa0568800:intron 40.0%
TTAATCCAACGGTCTACAAC+CGG - chr4_1:70435905-70435924 Msa0568800:CDS 40.0%
! CACAGCATATTTGGTTGGTA+AGG + chr4_1:70435985-70436004 None:intergenic 40.0%
TGTCACACAGCATATTTGGT+TGG + chr4_1:70435990-70436009 None:intergenic 40.0%
CTGCGATTGAAAGAAATGGG+GGG - chr4_1:70430487-70430506 Msa0568800:three_prime_UTR 45.0%
GGGTTGTGCAACTAAACCAA+AGG - chr4_1:70430507-70430526 Msa0568800:exon 45.0%
ACCAAAGGTTACGAAGGATG+GGG - chr4_1:70430522-70430541 Msa0568800:CDS 45.0%
CACTGTTGAAACCAAAGTGG+AGG - chr4_1:70430588-70430607 Msa0568800:CDS 45.0%
CAAGAGCAATTGTTGCAGAG+TGG - chr4_1:70430619-70430638 Msa0568800:CDS 45.0%
!! ATCGTGTTGGCTTAGGACAT+AGG + chr4_1:70431127-70431146 None:intergenic 45.0%
!! TAGCTTGATCGTGTTGGCTT+AGG + chr4_1:70431134-70431153 None:intergenic 45.0%
AATGTCAATTCTTGGCTGCG+AGG - chr4_1:70431314-70431333 Msa0568800:intron 45.0%
ATGTCAATTCTTGGCTGCGA+GGG - chr4_1:70431315-70431334 Msa0568800:intron 45.0%
AACATGAGTGGTCCCATATC+GGG + chr4_1:70431374-70431393 None:intergenic 45.0%
ATGCCAATGCTTAGGTGTGA+GGG - chr4_1:70431400-70431419 Msa0568800:intron 45.0%
GGTGGGATCTGAACAAATAG+GGG + chr4_1:70432187-70432206 None:intergenic 45.0%
GGGTGGGATCTGAACAAATA+GGG + chr4_1:70432188-70432207 None:intergenic 45.0%
TATTTGGCGGAAATCAAGGG+AGG - chr4_1:70432554-70432573 Msa0568800:intron 45.0%
AGTGATGAGTGGTAGGTAGT+GGG - chr4_1:70432779-70432798 Msa0568800:intron 45.0%
AGCCACACCTTCTTGAATTG+TGG - chr4_1:70433081-70433100 Msa0568800:intron 45.0%
TGCCACAATTCAAGAAGGTG+TGG + chr4_1:70433086-70433105 None:intergenic 45.0%
GGCAAATAGTGCACTGTGAT+TGG - chr4_1:70433102-70433121 Msa0568800:intron 45.0%
GTGAACTTAGCTCAGTTGGT+AGG + chr4_1:70433372-70433391 None:intergenic 45.0%
TGGTAGTAAGGAATATGGGC+TGG - chr4_1:70433582-70433601 Msa0568800:intron 45.0%
GGTAGTAAGGAATATGGGCT+GGG - chr4_1:70433583-70433602 Msa0568800:intron 45.0%
ACAACTTGATGTGTGGAGCA+AGG - chr4_1:70434033-70434052 Msa0568800:intron 45.0%
CAACTTGATGTGTGGAGCAA+GGG - chr4_1:70434034-70434053 Msa0568800:intron 45.0%
AGGTCAATTTGGACCGAACT+GGG + chr4_1:70434169-70434188 None:intergenic 45.0%
TAGGTCAATTTGGACCGAAC+TGG + chr4_1:70434170-70434189 None:intergenic 45.0%
GGTCCAAATTGACCTAGTCT+GGG - chr4_1:70434174-70434193 Msa0568800:intron 45.0%
GTCCAAATTGACCTAGTCTG+GGG - chr4_1:70434175-70434194 Msa0568800:intron 45.0%
TCCAAATTGACCTAGTCTGG+GGG - chr4_1:70434176-70434195 Msa0568800:intron 45.0%
GGATTTGGGTAGAATTAGGC+GGG + chr4_1:70434272-70434291 None:intergenic 45.0%
GGGATTTGGGTAGAATTAGG+CGG + chr4_1:70434273-70434292 None:intergenic 45.0%
GCTGGGATTTGGGTAGAATT+AGG + chr4_1:70434276-70434295 None:intergenic 45.0%
GGATTGAGTCTCTTGGTTAC+GGG + chr4_1:70434304-70434323 None:intergenic 45.0%
!! GTTTGTGGGTTGATTCACCT+TGG + chr4_1:70434339-70434358 None:intergenic 45.0%
TGTAAACCTGGAGATAGAGG+GGG + chr4_1:70434437-70434456 None:intergenic 45.0%
GTGTAAACCTGGAGATAGAG+GGG + chr4_1:70434438-70434457 None:intergenic 45.0%
CAGTGTAAACCTGGAGATAG+AGG + chr4_1:70434440-70434459 None:intergenic 45.0%
CTCCCAAAGACAGCCAAAAT+CGG - chr4_1:70434606-70434625 Msa0568800:intron 45.0%
TCCCAAAGACAGCCAAAATC+GGG - chr4_1:70434607-70434626 Msa0568800:intron 45.0%
GAGAGGAAACCCATTAAAGG+TGG + chr4_1:70435025-70435044 None:intergenic 45.0%
TGCGAGAGGAAACCCATTAA+AGG + chr4_1:70435028-70435047 None:intergenic 45.0%
GTCTTCACCACAGTTACTTC+AGG + chr4_1:70435606-70435625 None:intergenic 45.0%
AGAAGGTGAGAAAGCTTCAG+AGG - chr4_1:70435635-70435654 Msa0568800:intron 45.0%
ACTTCAATCACTTTCTCCGC+AGG + chr4_1:70435747-70435766 None:intergenic 45.0%
TGCGGAGAAAGTGATTGAAG+TGG - chr4_1:70435746-70435765 Msa0568800:CDS 45.0%
TGGGGTAGAGCATATATCCA+AGG - chr4_1:70435848-70435867 Msa0568800:CDS 45.0%
!! TCTTGGTGCCAGAACACCAA+AGG - chr4_1:70430318-70430337 Msa0568800:three_prime_UTR 50.0%
CCAAAGGTTACGAAGGATGG+GGG - chr4_1:70430523-70430542 Msa0568800:CDS 50.0%
GATGCCAATGCTTAGGTGTG+AGG - chr4_1:70431399-70431418 Msa0568800:intron 50.0%
GGGGTGGGATCTGAACAAAT+AGG + chr4_1:70432189-70432208 None:intergenic 50.0%
TAACTAGTGTGCGTGTCCCA+CGG - chr4_1:70432257-70432276 Msa0568800:intron 50.0%
GCGGAAATCAAGGGAGGTAA+TGG - chr4_1:70432560-70432579 Msa0568800:intron 50.0%
GAGTGATGAGTGGTAGGTAG+TGG - chr4_1:70432778-70432797 Msa0568800:intron 50.0%
AAGGTACGAGGTTCAAACCC+CGG + chr4_1:70433330-70433349 None:intergenic 50.0%
CCTCGTGAACTTAGCTCAGT+TGG + chr4_1:70433376-70433395 None:intergenic 50.0%
CCAACTGAGCTAAGTTCACG+AGG - chr4_1:70433373-70433392 Msa0568800:intron 50.0%
TGAGCTAAGTTCACGAGGAC+AGG - chr4_1:70433378-70433397 Msa0568800:intron 50.0%
TTCTGACATCAAGGCCCAGA+TGG + chr4_1:70433626-70433645 None:intergenic 50.0%
GGTGGGTGGAGATAGTAGAT+TGG + chr4_1:70433671-70433690 None:intergenic 50.0%
! GGTTATTGTCCTCTAGGGGT+GGG + chr4_1:70433688-70433707 None:intergenic 50.0%
CGGTCCAAATTGACCTAGTC+TGG - chr4_1:70434173-70434192 Msa0568800:intron 50.0%
TCCCCCAGACTAGGTCAATT+TGG + chr4_1:70434180-70434199 None:intergenic 50.0%
AGTCTCTTGGTTACGGGAAG+AGG + chr4_1:70434298-70434317 None:intergenic 50.0%
GATAGAGGGGGCTGAAACAA+GGG + chr4_1:70434425-70434444 None:intergenic 50.0%
AGATAGAGGGGGCTGAAACA+AGG + chr4_1:70434426-70434445 None:intergenic 50.0%
! GGGCCCCGATTTTTACCATT+CGG - chr4_1:70434557-70434576 Msa0568800:intron 50.0%
! GGCCCCGATTTTTACCATTC+GGG - chr4_1:70434558-70434577 Msa0568800:intron 50.0%
CGCCCGAATGGTAAAAATCG+GGG + chr4_1:70434563-70434582 None:intergenic 50.0%
GCGCCCGAATGGTAAAAATC+GGG + chr4_1:70434564-70434583 None:intergenic 50.0%
GGCGCCCGAATGGTAAAAAT+CGG + chr4_1:70434565-70434584 None:intergenic 50.0%
! CTTTGGGAGCAGTTTGGTAC+TGG + chr4_1:70434595-70434614 None:intergenic 50.0%
!!! GCCCGATTTTGGCTGTCTTT+GGG + chr4_1:70434611-70434630 None:intergenic 50.0%
TCAATCACTTTCTCCGCAGG+TGG + chr4_1:70435744-70435763 None:intergenic 50.0%
ACTGTCAGCATCAGAAGCCT+TGG + chr4_1:70435868-70435887 None:intergenic 50.0%
ACGACGACTTTGCAGCTACA+CGG + chr4_1:70435936-70435955 None:intergenic 50.0%
CCCCCATCCTTCGTAACCTT+TGG + chr4_1:70430526-70430545 None:intergenic 55.0%
!! GGATGGGGGTGTTGATGTGA+AGG - chr4_1:70430537-70430556 Msa0568800:CDS 55.0%
!! GAAGGCACCTGAACCTGAAC+AGG - chr4_1:70430555-70430574 Msa0568800:CDS 55.0%
TCGCCCTCACACCTAAGCAT+TGG + chr4_1:70431406-70431425 None:intergenic 55.0%
TGCATGGAGCTGCTCACTGA+TGG - chr4_1:70432821-70432840 Msa0568800:intron 55.0%
GACATCAAGGCCCAGATGGT+AGG + chr4_1:70433622-70433641 None:intergenic 55.0%
! TATTGTCCTCTAGGGGTGGG+TGG + chr4_1:70433685-70433704 None:intergenic 55.0%
! GGGTTATTGTCCTCTAGGGG+TGG + chr4_1:70433689-70433708 None:intergenic 55.0%
ACGGGAAGAGGCTGGGATTT+GGG + chr4_1:70434286-70434305 None:intergenic 55.0%
TACGGGAAGAGGCTGGGATT+TGG + chr4_1:70434287-70434306 None:intergenic 55.0%
CTTGGTTACGGGAAGAGGCT+GGG + chr4_1:70434293-70434312 None:intergenic 55.0%
TCTTGGTTACGGGAAGAGGC+TGG + chr4_1:70434294-70434313 None:intergenic 55.0%
TTTCAGCCCCCTCTATCTCC+AGG - chr4_1:70434428-70434447 Msa0568800:intron 55.0%
TGGAAAAATCGGCGCCCGAA+TGG + chr4_1:70434575-70434594 None:intergenic 55.0%
! GGCTGTCTTTGGGAGCAGTT+TGG + chr4_1:70434601-70434620 None:intergenic 55.0%
!!! GGCCCGATTTTGGCTGTCTT+TGG + chr4_1:70434612-70434631 None:intergenic 55.0%
! GCAAAATCGGGGCCCGATTT+TGG + chr4_1:70434622-70434641 None:intergenic 55.0%
AGTACAAATCGGGGCCCGAA+TGG + chr4_1:70434644-70434663 None:intergenic 55.0%
ATCACTTTCTCCGCAGGTGG+AGG + chr4_1:70435741-70435760 None:intergenic 55.0%
CTATCTCCACCCACCCCTAG+AGG - chr4_1:70433676-70433695 Msa0568800:intron 60.0%
! CGGGCCCCGATTTTGCCATT+CGG - chr4_1:70434626-70434645 Msa0568800:intron 60.0%
! GGGCCCCGATTTTGCCATTC+GGG - chr4_1:70434627-70434646 Msa0568800:intron 60.0%
GGGCCCGAATGGCAAAATCG+GGG + chr4_1:70434633-70434652 None:intergenic 60.0%
GGGGCCCGAATGGCAAAATC+GGG + chr4_1:70434634-70434653 None:intergenic 60.0%
CGGGGCCCGAATGGCAAAAT+CGG + chr4_1:70434635-70434654 None:intergenic 60.0%
TGTGGTGGTTCCTCCACCTG+CGG - chr4_1:70435728-70435747 Msa0568800:CDS 60.0%
TGCAGCCGGTTGTAGACCGT+TGG + chr4_1:70435913-70435932 None:intergenic 60.0%
TTGCAGCTACACGGTGCAGC+CGG + chr4_1:70435927-70435946 None:intergenic 60.0%
GCTGCTCTCTCCCCCAGACT+AGG + chr4_1:70434189-70434208 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 70430301 70436128 70430301 ID=Msa0568800;Name=Msa0568800
chr4_1 mRNA 70430301 70436128 70430301 ID=Msa0568800-mRNA-1;Parent=Msa0568800;Name=Msa0568800-mRNA-1;_AED=0.01;_eAED=0.01;_QI=201|1|1|1|1|1|2|220|304
chr4_1 exon 70430301 70431213 70430301 ID=Msa0568800-mRNA-1:exon:23768;Parent=Msa0568800-mRNA-1
chr4_1 exon 70435706 70436128 70435706 ID=Msa0568800-mRNA-1:exon:23767;Parent=Msa0568800-mRNA-1
chr4_1 five_prime_UTR 70435928 70436128 70435928 ID=Msa0568800-mRNA-1:five_prime_utr;Parent=Msa0568800-mRNA-1
chr4_1 CDS 70435706 70435927 70435706 ID=Msa0568800-mRNA-1:cds;Parent=Msa0568800-mRNA-1
chr4_1 CDS 70430521 70431213 70430521 ID=Msa0568800-mRNA-1:cds;Parent=Msa0568800-mRNA-1
chr4_1 three_prime_UTR 70430301 70430520 70430301 ID=Msa0568800-mRNA-1:three_prime_utr;Parent=Msa0568800-mRNA-1
Gene Sequence

>Msa0568800

ATGGGGGGTTGTGCAACTAAACCAAAGGTTACGAAGGATGGGGGTGTTGATGTGAAGGCACCTGAACCTGAACAGGTTAAAGAAGACACTGTTGAAACCAAAGTGGAGGCAGAAAAACAAGAGCAATTGTTGCAGAGTGGTCTCAATCTTGACGTTAACGAAATTGTTGATGATGATCAAGCAAATAAACGACGTTCTCTAAGCTTGTTGTTCAACAAAGAGAATGAAGATACAATTACAAAGGTTTCCACTCAAAATGAAAAAAACAAAGCTGAGGAAACTGTGAAAGAAGAAACATTAGAAACAGAGAAACCTTTGGAGGATGCTAAAAACATCGAGCCAACTTTGAAACATGAATCTCCAAAAACAGAGGAAAAACCAACTCAGGAAACTAAAAACAATGAACCATCTACAGAACAAGAATCTACAGTTATTAAGGTTGATGTTGAGGAAAAACCTTCATTGCAAAATCAAATCACTGATTCAGCTGCCGAAGAGATTGTGAAGACAGAAACACCAGAAGAAGCTAAGAAAACTTCACAAGAAACTAGTAAAATCAATGAACCAGCTGAAGAAACTGTTGTGAAACAAAACCAAAATGATATTGCACCTGAAGTAACTGTGGTGAAGACAGAAACACAAGAAGGTGAGAAAGCTTCAGAGGAAACAAAAAGCAATGAGTTGAATGAACCAATCAAACTAGAAAAATCATCTGAGACTATTCTCATTGAAAATGTGGTGGTTCCTCCACCTGCGGAGAAAGTGATTGAAGTGGTTTTAACAAATGCAGAATCTGTGGAGAACAAAATAGTGGAACCAACATCTAGCATAGAAGAGAAAAATCATGTTGATGTTGGGGTAGAGCATATATCCAAGGCTTCTGATGCTGACAGTGAAAAAGCTTCTATCTCTTAA
Protein sequence

>Msa0568800

MGGCATKPKVTKDGGVDVKAPEPEQVKEDTVETKVEAEKQEQLLQSGLNLDVNEIVDDDQANKRRSLSLLFNKENEDTITKVSTQNEKNKAEETVKEETLETEKPLEDAKNIEPTLKHESPKTEEKPTQETKNNEPSTEQESTVIKVDVEEKPSLQNQITDSAAEEIVKTETPEEAKKTSQETSKINEPAEETVVKQNQNDIAPEVTVVKTETQEGEKASEETKSNELNEPIKLEKSSETILIENVVVPPPAEKVIEVVLTNAESVENKIVEPTSSIEEKNHVDVGVEHISKASDADSEKASIS*