Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0194020 | AES64075.1 | 93.333 | 360 | 19 | 4 | 1 | 359 | 1 | 356 | 0.0 | 614 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0194020 | sp|Q8VZN1|OFP5_ARATH | 33.509 | 379 | 186 | 15 | 1 | 345 | 1 | 347 | 1.56e-32 | 127 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0194020 | G7ILU8 | 93.333 | 360 | 19 | 4 | 1 | 359 | 1 | 356 | 0.0 | 614 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0194020 | TF | OFP |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0148340 | Msa0194020 | 0.831222 | 1.886887e-55 | -8.615850e-47 |
| Msa0194020 | Msa0203160 | 0.811332 | 7.381950e-51 | -8.615850e-47 |
| Msa0194020 | Msa0208520 | 0.815271 | 1.006794e-51 | -8.615850e-47 |
| Msa0194020 | Msa0235890 | 0.835706 | 1.435657e-56 | -8.615850e-47 |
| Msa0194020 | Msa0248980 | 0.815559 | 8.686679e-52 | -8.615850e-47 |
| Msa0194020 | Msa0372670 | 0.800864 | 1.179926e-48 | -8.615850e-47 |
| Msa0194020 | Msa0398640 | 0.808415 | 3.131779e-50 | -8.615850e-47 |
| Msa0194020 | Msa0426330 | 0.835239 | 1.884412e-56 | -8.615850e-47 |
| Msa0194020 | Msa0526890 | 0.801633 | 8.210810e-49 | -8.615850e-47 |
| Msa0194020 | Msa0547400 | 0.813064 | 3.092380e-51 | -8.615850e-47 |
| Msa0194020 | Msa0602120 | 0.811067 | 8.427400e-51 | -8.615850e-47 |
| Msa0194020 | Msa0619980 | 0.845570 | 3.741203e-59 | -8.615850e-47 |
| Msa0194020 | Msa0643250 | 0.801939 | 7.104625e-49 | -8.615850e-47 |
| Msa0194020 | Msa0652980 | 0.807975 | 3.886436e-50 | -8.615850e-47 |
| Msa0194020 | Msa0706370 | 0.832794 | 7.715623e-56 | -8.615850e-47 |
| Msa0194020 | Msa0754720 | -0.805482 | 1.306699e-49 | -8.615850e-47 |
| Msa0194020 | Msa0810020 | 0.823342 | 1.458856e-53 | -8.615850e-47 |
| Msa0194020 | Msa0822990 | 0.810702 | 1.010696e-50 | -8.615850e-47 |
| Msa0194020 | Msa0850500 | 0.812163 | 4.869088e-51 | -8.615850e-47 |
| Msa0194020 | Msa0870620 | 0.806544 | 7.812455e-50 | -8.615850e-47 |
| Msa0194020 | Msa0951710 | 0.808305 | 3.306507e-50 | -8.615850e-47 |
| Msa0194020 | Msa1033560 | 0.831666 | 1.466913e-55 | -8.615850e-47 |
| Msa0194020 | Msa1040890 | 0.820575 | 6.378377e-53 | -8.615850e-47 |
| Msa0194020 | Msa1130210 | -0.812862 | 3.423344e-51 | -8.615850e-47 |
| Msa0194020 | Msa1150970 | 0.822170 | 2.733030e-53 | -8.615850e-47 |
| Msa0194020 | Msa1160400 | 0.813428 | 2.572766e-51 | -8.615850e-47 |
| Msa0194020 | Msa1172590 | 0.813351 | 2.674763e-51 | -8.615850e-47 |
| Msa0194020 | Msa1217660 | 0.809600 | 1.746656e-50 | -8.615850e-47 |
| Msa0194020 | Msa1218480 | 0.804926 | 1.708304e-49 | -8.615850e-47 |
| Msa0194020 | Msa1254190 | 0.803224 | 3.861339e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0194020 | MtrunA17_Chr2g0284471 | 84.722 | 360 | 20 | 5 | 1 | 359 | 1 | 326 | 0.0 | 532 |
| Msa0194020 | MtrunA17_Chr8g0379681 | 38.677 | 393 | 154 | 11 | 2 | 361 | 1 | 339 | 4.15e-60 | 197 |
| Msa0194020 | MtrunA17_Chr7g0244571 | 60.606 | 66 | 26 | 0 | 280 | 345 | 281 | 346 | 2.59e-25 | 104 |
| Msa0194020 | MtrunA17_Chr4g0013081 | 60.294 | 68 | 27 | 0 | 281 | 348 | 315 | 382 | 3.07e-25 | 105 |
| Msa0194020 | MtrunA17_Chr5g0432531 | 33.714 | 175 | 81 | 6 | 182 | 346 | 103 | 252 | 7.66e-24 | 99.0 |
| Msa0194020 | MtrunA17_Chr8g0390531 | 51.613 | 62 | 30 | 0 | 280 | 341 | 258 | 319 | 5.16e-16 | 78.2 |
| Msa0194020 | MtrunA17_Chr1g0177881 | 41.026 | 78 | 42 | 1 | 283 | 360 | 105 | 178 | 1.54e-13 | 68.6 |
| Msa0194020 | MtrunA17_Chr4g0075391 | 37.037 | 81 | 47 | 1 | 268 | 344 | 65 | 145 | 1.13e-11 | 62.4 |
| Msa0194020 | MtrunA17_Chr7g0267111 | 42.857 | 63 | 36 | 0 | 283 | 345 | 113 | 175 | 2.19e-11 | 62.8 |
| Msa0194020 | MtrunA17_Chr4g0025901 | 40.000 | 65 | 39 | 0 | 277 | 341 | 96 | 160 | 2.46e-11 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0194020 | AT4G18830.1 | 33.509 | 379 | 186 | 15 | 1 | 345 | 1 | 347 | 1.59e-33 | 127 |
| Msa0194020 | AT1G06920.1 | 65.152 | 66 | 23 | 0 | 279 | 344 | 242 | 307 | 8.53e-24 | 100 |
| Msa0194020 | AT2G30400.1 | 61.765 | 68 | 26 | 0 | 279 | 346 | 251 | 318 | 3.90e-23 | 98.6 |
| Msa0194020 | AT5G58360.1 | 49.296 | 71 | 35 | 1 | 281 | 351 | 225 | 294 | 1.34e-19 | 88.2 |
| Msa0194020 | AT5G01840.1 | 56.452 | 62 | 27 | 0 | 284 | 345 | 202 | 263 | 1.56e-19 | 87.8 |
| Msa0194020 | AT5G19650.1 | 46.774 | 62 | 33 | 0 | 280 | 341 | 154 | 215 | 1.31e-14 | 72.8 |
| Msa0194020 | AT2G18500.1 | 40.909 | 66 | 39 | 0 | 279 | 344 | 225 | 290 | 5.64e-13 | 69.3 |
| Msa0194020 | AT3G52525.1 | 46.032 | 63 | 34 | 0 | 281 | 343 | 67 | 129 | 2.56e-12 | 64.7 |
| Msa0194020 | AT4G04025.1 | 41.176 | 68 | 40 | 0 | 273 | 340 | 106 | 173 | 6.68e-11 | 61.2 |
Find 48 sgRNAs with CRISPR-Local
Find 106 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTTCTTCTTCTACTTCTTC+TGG | 0.241554 | 2_1:+9904950 | Msa0194020:CDS |
| TTAAAGGAGGAGGATATTAT+TGG | 0.266117 | 2_1:+9905136 | Msa0194020:CDS |
| ACAAGGTATAGTTAAGTTAA+AGG | 0.266127 | 2_1:+9905120 | Msa0194020:CDS |
| GAGGAAAGCACAACAGGTTT+TGG | 0.290055 | 2_1:+9905267 | Msa0194020:CDS |
| TGGTTTGATATGAGTCAATA+TGG | 0.296873 | 2_1:+9905922 | Msa0194020:CDS |
| TTCACCCTTGAAACTTTCTT+TGG | 0.300747 | 2_1:-9905565 | None:intergenic |
| TTTGATATTGGTGGAAAATA+TGG | 0.307283 | 2_1:+9905079 | Msa0194020:CDS |
| AACTTAGAAAGCCAAGAAAA+AGG | 0.308204 | 2_1:-9904974 | None:intergenic |
| AAAAGGAATATGAAAATATA+AGG | 0.317179 | 2_1:+9905233 | Msa0194020:CDS |
| GATATGAGTCAATATGGTTT+AGG | 0.337600 | 2_1:+9905928 | Msa0194020:CDS |
| GAAAATATATTCACCAAGAT+TGG | 0.341908 | 2_1:+9905585 | Msa0194020:CDS |
| ACAGCAAAACTATCTAATTC+TGG | 0.365488 | 2_1:-9905730 | None:intergenic |
| TAATTGGTAATTATCATTCA+TGG | 0.367760 | 2_1:-9905978 | None:intergenic |
| GCAAAAGAATGTGTTGTTCT+TGG | 0.370662 | 2_1:-9905376 | None:intergenic |
| GATTAGTAAGGCAGAAGAAA+TGG | 0.373351 | 2_1:+9905822 | Msa0194020:CDS |
| AAAAGATGAAGAAAGAAAGA+AGG | 0.376885 | 2_1:+9905668 | Msa0194020:CDS |
| CTTGGTGTACAAATTGTTCT+TGG | 0.377176 | 2_1:-9905358 | None:intergenic |
| ATCTCATAATCAAAGTATTT+AGG | 0.389618 | 2_1:+9905893 | Msa0194020:CDS |
| TCAACCTTTGAAACCAATCT+TGG | 0.392383 | 2_1:-9905598 | None:intergenic |
| GAATCTCTAAAATCCTGCTT+TGG | 0.398970 | 2_1:-9905772 | None:intergenic |
| ATTTGAGAGGAAAGCACAAC+AGG | 0.409645 | 2_1:+9905261 | Msa0194020:CDS |
| AAAGATGAAGAAAGAAAGAA+GGG | 0.427135 | 2_1:+9905669 | Msa0194020:CDS |
| GGAAAATATGGTAACAAAAG+TGG | 0.450154 | 2_1:+9905091 | Msa0194020:CDS |
| TCAAAGTATTTAGGCAGGTA+TGG | 0.455774 | 2_1:+9905902 | Msa0194020:CDS |
| AGAAGAAATGGAAGAGTTGT+TGG | 0.458484 | 2_1:+9905834 | Msa0194020:CDS |
| TATAGTTAAGTTAAAGGAGG+AGG | 0.476668 | 2_1:+9905126 | Msa0194020:CDS |
| TGAAGAGAAACAGATTAGTA+AGG | 0.497006 | 2_1:+9905810 | Msa0194020:CDS |
| GGAAACCAAAGAAAGTTTCA+AGG | 0.508120 | 2_1:+9905560 | Msa0194020:CDS |
| TTCACCAAGATTGGTTTCAA+AGG | 0.510346 | 2_1:+9905594 | Msa0194020:CDS |
| ACAACAAAATAATGATGAAG+TGG | 0.525694 | 2_1:+9904891 | None:intergenic |
| CAACAAAATAATGATGAAGT+GGG | 0.537547 | 2_1:+9904892 | None:intergenic |
| GTATGAATATGATAGAGAAA+AGG | 0.539540 | 2_1:+9905216 | Msa0194020:CDS |
| CATAATCAAAGTATTTAGGC+AGG | 0.542446 | 2_1:+9905897 | Msa0194020:CDS |
| CCACCAATATCAAAACATGA+AGG | 0.542576 | 2_1:-9905070 | None:intergenic |
| TAAAAGCATTAGAAGAAATG+AGG | 0.552124 | 2_1:+9905632 | Msa0194020:CDS |
| AGGTATAGTTAAGTTAAAGG+AGG | 0.562314 | 2_1:+9905123 | Msa0194020:CDS |
| GATGAAGAAAGAAAGAAGGG+AGG | 0.575723 | 2_1:+9905672 | Msa0194020:CDS |
| ATGTTCATCAAATCCAAAGC+AGG | 0.580773 | 2_1:+9905759 | Msa0194020:CDS |
| GAAACCAAAGAAAGTTTCAA+GGG | 0.604643 | 2_1:+9905561 | Msa0194020:CDS |
| GATGATGCTGATGAAGAAGA+AGG | 0.614756 | 2_1:-9904926 | None:intergenic |
| CCAATATCAAAACATGAAGG+TGG | 0.616765 | 2_1:-9905067 | None:intergenic |
| AAAATGGTGAATGATAAGAA+GGG | 0.623597 | 2_1:+9905175 | Msa0194020:CDS |
| ATATAAGGAGAAGATTTGAG+AGG | 0.626627 | 2_1:+9905248 | Msa0194020:CDS |
| GGAGGAAGAAATTCATGTGG+AGG | 0.632936 | 2_1:+9905690 | Msa0194020:CDS |
| AACAAAAGTGGAAGAAAACA+AGG | 0.640173 | 2_1:+9905103 | Msa0194020:CDS |
| AAGGGAGGAAGAAATTCATG+TGG | 0.651171 | 2_1:+9905687 | Msa0194020:CDS |
| AACAAAATAATGATGAAGTG+GGG | 0.664450 | 2_1:+9904893 | None:intergenic |
| GTTAGATCAGAAATGCAATG+CGG | 0.769031 | 2_1:+9905952 | Msa0194020:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAGGAATATGAAAATATA+AGG | + | chr2_1:9905233-9905252 | Msa0194020:CDS | 15.0% |
| !! | AAAAGGAATATGAAAATATA+AGG | + | chr2_1:9905233-9905252 | Msa0194020:CDS | 15.0% |
| !!! | TTCAATATTTTTGCATGATT+TGG | - | chr2_1:9905025-9905044 | None:intergenic | 20.0% |
| !! | TTTAGAAGATCAAAGAAAAA+TGG | + | chr2_1:9905159-9905178 | Msa0194020:CDS | 20.0% |
| !!! | ATCTCATAATCAAAGTATTT+AGG | + | chr2_1:9905893-9905912 | Msa0194020:CDS | 20.0% |
| !!! | TTCAATATTTTTGCATGATT+TGG | - | chr2_1:9905025-9905044 | None:intergenic | 20.0% |
| !! | TTTAGAAGATCAAAGAAAAA+TGG | + | chr2_1:9905159-9905178 | Msa0194020:CDS | 20.0% |
| !!! | ATCTCATAATCAAAGTATTT+AGG | + | chr2_1:9905893-9905912 | Msa0194020:CDS | 20.0% |
| ! | TTTGATATTGGTGGAAAATA+TGG | + | chr2_1:9905079-9905098 | Msa0194020:CDS | 25.0% |
| ! | ACAAGGTATAGTTAAGTTAA+AGG | + | chr2_1:9905120-9905139 | Msa0194020:CDS | 25.0% |
| ! | AAAAATGGTGAATGATAAGA+AGG | + | chr2_1:9905174-9905193 | Msa0194020:CDS | 25.0% |
| ! | AAAATGGTGAATGATAAGAA+GGG | + | chr2_1:9905175-9905194 | Msa0194020:CDS | 25.0% |
| ! | GTATGAATATGATAGAGAAA+AGG | + | chr2_1:9905216-9905235 | Msa0194020:CDS | 25.0% |
| ! | TAAAGACTCAAGAAAAACAA+AGG | + | chr2_1:9905536-9905555 | Msa0194020:CDS | 25.0% |
| ! | GAAAATATATTCACCAAGAT+TGG | + | chr2_1:9905585-9905604 | Msa0194020:CDS | 25.0% |
| !!! | TAAAAGCATTAGAAGAAATG+AGG | + | chr2_1:9905632-9905651 | Msa0194020:CDS | 25.0% |
| ! | AAAAGATGAAGAAAGAAAGA+AGG | + | chr2_1:9905668-9905687 | Msa0194020:CDS | 25.0% |
| ! | AAAGATGAAGAAAGAAAGAA+GGG | + | chr2_1:9905669-9905688 | Msa0194020:CDS | 25.0% |
| ! | TTTGATATTGGTGGAAAATA+TGG | + | chr2_1:9905079-9905098 | Msa0194020:CDS | 25.0% |
| ! | ACAAGGTATAGTTAAGTTAA+AGG | + | chr2_1:9905120-9905139 | Msa0194020:CDS | 25.0% |
| ! | AAAAATGGTGAATGATAAGA+AGG | + | chr2_1:9905174-9905193 | Msa0194020:CDS | 25.0% |
| ! | AAAATGGTGAATGATAAGAA+GGG | + | chr2_1:9905175-9905194 | Msa0194020:CDS | 25.0% |
| ! | GTATGAATATGATAGAGAAA+AGG | + | chr2_1:9905216-9905235 | Msa0194020:CDS | 25.0% |
| ! | TAAAGACTCAAGAAAAACAA+AGG | + | chr2_1:9905536-9905555 | Msa0194020:CDS | 25.0% |
| ! | GAAAATATATTCACCAAGAT+TGG | + | chr2_1:9905585-9905604 | Msa0194020:CDS | 25.0% |
| !!! | TAAAAGCATTAGAAGAAATG+AGG | + | chr2_1:9905632-9905651 | Msa0194020:CDS | 25.0% |
| ! | AAAAGATGAAGAAAGAAAGA+AGG | + | chr2_1:9905668-9905687 | Msa0194020:CDS | 25.0% |
| ! | AAAGATGAAGAAAGAAAGAA+GGG | + | chr2_1:9905669-9905688 | Msa0194020:CDS | 25.0% |
| AACTTAGAAAGCCAAGAAAA+AGG | - | chr2_1:9904977-9904996 | None:intergenic | 30.0% | |
| GGAAAATATGGTAACAAAAG+TGG | + | chr2_1:9905091-9905110 | Msa0194020:CDS | 30.0% | |
| AACAAAAGTGGAAGAAAACA+AGG | + | chr2_1:9905103-9905122 | Msa0194020:CDS | 30.0% | |
| AGGTATAGTTAAGTTAAAGG+AGG | + | chr2_1:9905123-9905142 | Msa0194020:CDS | 30.0% | |
| TATAGTTAAGTTAAAGGAGG+AGG | + | chr2_1:9905126-9905145 | Msa0194020:CDS | 30.0% | |
| TTAAAGGAGGAGGATATTAT+TGG | + | chr2_1:9905136-9905155 | Msa0194020:CDS | 30.0% | |
| ATATAAGGAGAAGATTTGAG+AGG | + | chr2_1:9905248-9905267 | Msa0194020:CDS | 30.0% | |
| GAAAAAACATGAAGAGTTGA+CGG | + | chr2_1:9905513-9905532 | Msa0194020:CDS | 30.0% | |
| GAAACCAAAGAAAGTTTCAA+GGG | + | chr2_1:9905561-9905580 | Msa0194020:CDS | 30.0% | |
| ACAGCAAAACTATCTAATTC+TGG | - | chr2_1:9905733-9905752 | None:intergenic | 30.0% | |
| TGAAGAGAAACAGATTAGTA+AGG | + | chr2_1:9905810-9905829 | Msa0194020:CDS | 30.0% | |
| ! | CATAATCAAAGTATTTAGGC+AGG | + | chr2_1:9905897-9905916 | Msa0194020:CDS | 30.0% |
| TGGTTTGATATGAGTCAATA+TGG | + | chr2_1:9905922-9905941 | Msa0194020:CDS | 30.0% | |
| GATATGAGTCAATATGGTTT+AGG | + | chr2_1:9905928-9905947 | Msa0194020:CDS | 30.0% | |
| AACTTAGAAAGCCAAGAAAA+AGG | - | chr2_1:9904977-9904996 | None:intergenic | 30.0% | |
| GGAAAATATGGTAACAAAAG+TGG | + | chr2_1:9905091-9905110 | Msa0194020:CDS | 30.0% | |
| AACAAAAGTGGAAGAAAACA+AGG | + | chr2_1:9905103-9905122 | Msa0194020:CDS | 30.0% | |
| AGGTATAGTTAAGTTAAAGG+AGG | + | chr2_1:9905123-9905142 | Msa0194020:CDS | 30.0% | |
| TATAGTTAAGTTAAAGGAGG+AGG | + | chr2_1:9905126-9905145 | Msa0194020:CDS | 30.0% | |
| TTAAAGGAGGAGGATATTAT+TGG | + | chr2_1:9905136-9905155 | Msa0194020:CDS | 30.0% | |
| ATATAAGGAGAAGATTTGAG+AGG | + | chr2_1:9905248-9905267 | Msa0194020:CDS | 30.0% | |
| GAAAAAACATGAAGAGTTGA+CGG | + | chr2_1:9905513-9905532 | Msa0194020:CDS | 30.0% | |
| GAAACCAAAGAAAGTTTCAA+GGG | + | chr2_1:9905561-9905580 | Msa0194020:CDS | 30.0% | |
| ACAGCAAAACTATCTAATTC+TGG | - | chr2_1:9905733-9905752 | None:intergenic | 30.0% | |
| TGAAGAGAAACAGATTAGTA+AGG | + | chr2_1:9905810-9905829 | Msa0194020:CDS | 30.0% | |
| ! | CATAATCAAAGTATTTAGGC+AGG | + | chr2_1:9905897-9905916 | Msa0194020:CDS | 30.0% |
| TGGTTTGATATGAGTCAATA+TGG | + | chr2_1:9905922-9905941 | Msa0194020:CDS | 30.0% | |
| GATATGAGTCAATATGGTTT+AGG | + | chr2_1:9905928-9905947 | Msa0194020:CDS | 30.0% | |
| TCTTCTTCTTCTACTTCTTC+TGG | + | chr2_1:9904950-9904969 | Msa0194020:CDS | 35.0% | |
| CCAATATCAAAACATGAAGG+TGG | - | chr2_1:9905070-9905089 | None:intergenic | 35.0% | |
| !!! | CCACCTTCATGTTTTGATAT+TGG | + | chr2_1:9905067-9905086 | Msa0194020:CDS | 35.0% |
| CCACCAATATCAAAACATGA+AGG | - | chr2_1:9905073-9905092 | None:intergenic | 35.0% | |
| !!! | CCTTCATGTTTTGATATTGG+TGG | + | chr2_1:9905070-9905089 | Msa0194020:CDS | 35.0% |
| ! | CTTGGTGTACAAATTGTTCT+TGG | - | chr2_1:9905361-9905380 | None:intergenic | 35.0% |
| ! | GCAAAAGAATGTGTTGTTCT+TGG | - | chr2_1:9905379-9905398 | None:intergenic | 35.0% |
| AGACTCAAGAAAAACAAAGG+AGG | + | chr2_1:9905539-9905558 | Msa0194020:CDS | 35.0% | |
| GGAAACCAAAGAAAGTTTCA+AGG | + | chr2_1:9905560-9905579 | Msa0194020:CDS | 35.0% | |
| TTCACCCTTGAAACTTTCTT+TGG | - | chr2_1:9905568-9905587 | None:intergenic | 35.0% | |
| !! | TTCACCAAGATTGGTTTCAA+AGG | + | chr2_1:9905594-9905613 | Msa0194020:CDS | 35.0% |
| !! | TCAACCTTTGAAACCAATCT+TGG | - | chr2_1:9905601-9905620 | None:intergenic | 35.0% |
| ATGTTCATCAAATCCAAAGC+AGG | + | chr2_1:9905759-9905778 | Msa0194020:CDS | 35.0% | |
| !! | GAATCTCTAAAATCCTGCTT+TGG | - | chr2_1:9905775-9905794 | None:intergenic | 35.0% |
| GATTAGTAAGGCAGAAGAAA+TGG | + | chr2_1:9905822-9905841 | Msa0194020:CDS | 35.0% | |
| AGAAGAAATGGAAGAGTTGT+TGG | + | chr2_1:9905834-9905853 | Msa0194020:CDS | 35.0% | |
| ! | TCAAAGTATTTAGGCAGGTA+TGG | + | chr2_1:9905902-9905921 | Msa0194020:CDS | 35.0% |
| GTTAGATCAGAAATGCAATG+CGG | + | chr2_1:9905952-9905971 | Msa0194020:CDS | 35.0% | |
| TCTTCTTCTTCTACTTCTTC+TGG | + | chr2_1:9904950-9904969 | Msa0194020:CDS | 35.0% | |
| CCAATATCAAAACATGAAGG+TGG | - | chr2_1:9905070-9905089 | None:intergenic | 35.0% | |
| !!! | CCACCTTCATGTTTTGATAT+TGG | + | chr2_1:9905067-9905086 | Msa0194020:CDS | 35.0% |
| CCACCAATATCAAAACATGA+AGG | - | chr2_1:9905073-9905092 | None:intergenic | 35.0% | |
| !!! | CCTTCATGTTTTGATATTGG+TGG | + | chr2_1:9905070-9905089 | Msa0194020:CDS | 35.0% |
| ! | CTTGGTGTACAAATTGTTCT+TGG | - | chr2_1:9905361-9905380 | None:intergenic | 35.0% |
| ! | GCAAAAGAATGTGTTGTTCT+TGG | - | chr2_1:9905379-9905398 | None:intergenic | 35.0% |
| AGACTCAAGAAAAACAAAGG+AGG | + | chr2_1:9905539-9905558 | Msa0194020:CDS | 35.0% | |
| GGAAACCAAAGAAAGTTTCA+AGG | + | chr2_1:9905560-9905579 | Msa0194020:CDS | 35.0% | |
| TTCACCCTTGAAACTTTCTT+TGG | - | chr2_1:9905568-9905587 | None:intergenic | 35.0% | |
| !! | TTCACCAAGATTGGTTTCAA+AGG | + | chr2_1:9905594-9905613 | Msa0194020:CDS | 35.0% |
| !! | TCAACCTTTGAAACCAATCT+TGG | - | chr2_1:9905601-9905620 | None:intergenic | 35.0% |
| ATGTTCATCAAATCCAAAGC+AGG | + | chr2_1:9905759-9905778 | Msa0194020:CDS | 35.0% | |
| !! | GAATCTCTAAAATCCTGCTT+TGG | - | chr2_1:9905775-9905794 | None:intergenic | 35.0% |
| GATTAGTAAGGCAGAAGAAA+TGG | + | chr2_1:9905822-9905841 | Msa0194020:CDS | 35.0% | |
| AGAAGAAATGGAAGAGTTGT+TGG | + | chr2_1:9905834-9905853 | Msa0194020:CDS | 35.0% | |
| ! | TCAAAGTATTTAGGCAGGTA+TGG | + | chr2_1:9905902-9905921 | Msa0194020:CDS | 35.0% |
| GTTAGATCAGAAATGCAATG+CGG | + | chr2_1:9905952-9905971 | Msa0194020:CDS | 35.0% | |
| GATGATGCTGATGAAGAAGA+AGG | - | chr2_1:9904929-9904948 | None:intergenic | 40.0% | |
| ! | CTTCTTCTGGTCCTTTTTCT+TGG | + | chr2_1:9904963-9904982 | Msa0194020:CDS | 40.0% |
| ! | ATTTGAGAGGAAAGCACAAC+AGG | + | chr2_1:9905261-9905280 | Msa0194020:CDS | 40.0% |
| GATGAAGAAAGAAAGAAGGG+AGG | + | chr2_1:9905672-9905691 | Msa0194020:CDS | 40.0% | |
| AAGGGAGGAAGAAATTCATG+TGG | + | chr2_1:9905687-9905706 | Msa0194020:CDS | 40.0% | |
| GATGATGCTGATGAAGAAGA+AGG | - | chr2_1:9904929-9904948 | None:intergenic | 40.0% | |
| ! | CTTCTTCTGGTCCTTTTTCT+TGG | + | chr2_1:9904963-9904982 | Msa0194020:CDS | 40.0% |
| ! | ATTTGAGAGGAAAGCACAAC+AGG | + | chr2_1:9905261-9905280 | Msa0194020:CDS | 40.0% |
| GATGAAGAAAGAAAGAAGGG+AGG | + | chr2_1:9905672-9905691 | Msa0194020:CDS | 40.0% | |
| AAGGGAGGAAGAAATTCATG+TGG | + | chr2_1:9905687-9905706 | Msa0194020:CDS | 40.0% | |
| !! | GAGGAAAGCACAACAGGTTT+TGG | + | chr2_1:9905267-9905286 | Msa0194020:CDS | 45.0% |
| GGAGGAAGAAATTCATGTGG+AGG | + | chr2_1:9905690-9905709 | Msa0194020:CDS | 45.0% | |
| !! | GAGGAAAGCACAACAGGTTT+TGG | + | chr2_1:9905267-9905286 | Msa0194020:CDS | 45.0% |
| GGAGGAAGAAATTCATGTGG+AGG | + | chr2_1:9905690-9905709 | Msa0194020:CDS | 45.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 9904902 | 9905987 | 9904902 | ID=Msa0194020;Name=Msa0194020 |
| chr2_1 | mRNA | 9904902 | 9905987 | 9904902 | ID=Msa0194020-mRNA-1;Parent=Msa0194020;Name=Msa0194020-mRNA-1;_AED=0.00;_eAED=0.01;_QI=0|-1|0|1|-1|1|1|0|361 |
| chr2_1 | exon | 9904902 | 9905987 | 9904902 | ID=Msa0194020-mRNA-1:exon:4511;Parent=Msa0194020-mRNA-1 |
| chr2_1 | CDS | 9904902 | 9905987 | 9904902 | ID=Msa0194020-mRNA-1:cds;Parent=Msa0194020-mRNA-1 |
| Gene Sequence |
| Protein sequence |
