AlfalfaGEDB | Msa1217660

M. sativa cultivar zhongmu-4 / Msa1217660

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1217660	XP_003609675.1	90.459	566	51	2	1	565	1	564	0.0	997

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000490	Msa1217660	-0.831620	1.505603e-55	-8.615850e-47
Msa0001790	Msa1217660	0.805106	1.566792e-49	-8.615850e-47
Msa0004860	Msa1217660	0.827045	1.943013e-54	-8.615850e-47
Msa0004920	Msa1217660	0.811750	5.988455e-51	-8.615850e-47
Msa0005350	Msa1217660	0.800315	1.526714e-48	-8.615850e-47
Msa0006290	Msa1217660	0.823062	1.695826e-53	-8.615850e-47
Msa0008340	Msa1217660	0.820527	6.543932e-53	-8.615850e-47
Msa0011720	Msa1217660	0.826179	3.126108e-54	-8.615850e-47
Msa0015300	Msa1217660	0.806375	8.482267e-50	-8.615850e-47
Msa0027540	Msa1217660	0.801881	7.303951e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1217660	MtrunA17_Chr4g0067371	90.459	566	51	2	1	565	1	564	0.0	997

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1217660	AT4G15820.1	32.246	521	272	16	49	560	10	458	6.70e-54	190

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Find 156 sgRNAs with CRISPR-Local

Find 239 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACAAAAGTTGTTGGCAT+CGG	0.581793	8_1:-80153269	None:intergenic
AAAACACCAAAGGGATTTCC+AGG	0.391921	8_1:+80151986	Msa1217660:CDS
AAAAGGGAAGAGGAAGAGAA+TGG	0.434209	8_1:+80151749	Msa1217660:CDS
AAACACCAAAGGGATTTCCA+GGG	0.684920	8_1:+80151987	Msa1217660:CDS
AAACTTCACCTCTAAGGAAC+AGG	0.407016	8_1:+80153204	Msa1217660:CDS
AAAGGGAAGAGGAAGAGAAT+GGG	0.392942	8_1:+80151750	Msa1217660:CDS
AAATCCGTTGACGACGAGTC+TGG	0.325214	8_1:+80152160	Msa1217660:CDS
AAATGATGGAAACACCAAAT+AGG	0.390911	8_1:+80152215	Msa1217660:CDS
AAATGCTTCTGGTGTTCCAT+TGG	0.455535	8_1:+80152126	Msa1217660:CDS
AACACCAAATAGGAAAACAA+AGG	0.654980	8_1:+80152225	Msa1217660:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTTGAAGAGACTATAACCAA+AGG	-	chr8_1:80151209-80151228	None:intergenic	30.0%
GTTATAGTCTCTTCAAAAAC+TGG	+	chr8_1:80151212-80151231	Msa1217660:CDS	30.0%
TACGGTGGTATTTATTTGAT+TGG	+	chr8_1:80151515-80151534	Msa1217660:CDS	30.0%
ACGGTGGTATTTATTTGATT+GGG	+	chr8_1:80151516-80151535	Msa1217660:CDS	30.0%
ATTTAAAAGCCCTTCAACTA+AGG	+	chr8_1:80151958-80151977	Msa1217660:CDS	30.0%
AACACCAAATAGGAAAACAA+AGG	+	chr8_1:80152225-80152244	Msa1217660:CDS	30.0%
TTACCATTGTTTATGCTCTT+AGG	-	chr8_1:80152262-80152281	None:intergenic	30.0%
TCGTATCAGTTATTGTCAAT+TGG	+	chr8_1:80152315-80152334	Msa1217660:intron	30.0%
AAGAAGTAATTAGCGAAGAT+AGG	+	chr8_1:80152509-80152528	Msa1217660:intron	30.0%
GATAATGTGGACAGTATAAA+TGG	+	chr8_1:80152665-80152684	Msa1217660:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8_1	gene	80151152	80154146	80151152	ID=Msa1217660;Name=Msa1217660
chr8_1	mRNA	80151152	80154146	80151152	ID=Msa1217660-mRNA-1;Parent=Msa1217660;Name=Msa1217660-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0\|1\|0.75\|1\|1\|1\|4\|441\|565
chr8_1	exon	80151152	80152277	80151152	ID=Msa1217660-mRNA-1:exon:27985;Parent=Msa1217660-mRNA-1
chr8_1	exon	80152582	80152796	80152582	ID=Msa1217660-mRNA-1:exon:27986;Parent=Msa1217660-mRNA-1
chr8_1	exon	80153148	80153360	80153148	ID=Msa1217660-mRNA-1:exon:27987;Parent=Msa1217660-mRNA-1
chr8_1	exon	80153562	80154146	80153562	ID=Msa1217660-mRNA-1:exon:27988;Parent=Msa1217660-mRNA-1
chr8_1	CDS	80151152	80152277	80151152	ID=Msa1217660-mRNA-1:cds;Parent=Msa1217660-mRNA-1
chr8_1	CDS	80152582	80152796	80152582	ID=Msa1217660-mRNA-1:cds;Parent=Msa1217660-mRNA-1
chr8_1	CDS	80153148	80153360	80153148	ID=Msa1217660-mRNA-1:cds;Parent=Msa1217660-mRNA-1
chr8_1	CDS	80153562	80153705	80153562	ID=Msa1217660-mRNA-1:cds;Parent=Msa1217660-mRNA-1
chr8_1	three_prime_UTR	80153706	80154146	80153706	ID=Msa1217660-mRNA-1:three_prime_utr;Parent=Msa1217660-mRNA-1

Gene Sequence

>Msa1217660

ATGGCGATTGCGCATTGCTTCTTCTTCCATGCGCCATTCACCACGAGACGAAAACCTTTGGTTATAGTCTCTTCAAAAACTGGTCAAAGGAAAAACTATCTGCGACCGAAAATTCTCAAAACCCTAACAAAACCCTCTCTATCCATTTCTCCCACTCTTCTACAACCACCAACACCGCAACCAATTCTATCTCCTCCTCAAGAACATGAACTCTGTGTTGATATCCCCGCCGACGAAATGCACGGAGAAGATATCGCTGGAGCTGTTGATGAGACTGGCGAATTTGAAGGATTACGAGTGTCCGTGGATACAGCAAAAGACAATCGTGTTTTTGGTAATGTTTCTGCTAAGGAGATTTTCAAATACGGTGGTATTTATTTGATTGGGGCTTTTGTGTTTCAAACTGTTTGTTACCTTTGGAATTCGAGAAATGAACATTCCAATGGGGATTTGGAAGTGAGTGAAAGGGAAAAGAGGAACATTTTGTTTGGTGGGAATGGAAAAACTGTGGAGGATCAATTAGTAGAAAGGAAAATTGAGGAAATTAAGTTAATGGCGAGGGAAGCTCGAAGAATTGAGTTATTGGAGAAGCAAGGTAAAAGGGAAGAGGAAGAGAATGGGGATCCTGAAATTGATGGGATTGAGAAAGAGATTGGTGAACGTTTGTTGAAGCTGAAGAATAGGATTAAGAGTAAAAAGGATAGTTCAGCAGCATTGCGATTAAATGGTCGTGGAAATTCTGCCGGTGGTGGTGATATGAGTGTGAATCCGGGGAAAGAGGAATTAGTATTTAAGAAAAAGTCTAAATTTAAAAGCCCTTCAACTAAGGCTACAAAAACACCAAAGGGATTTCCAGGGACTCAAGATCATAGGGTTTCGAGTGTAAAACCTCAAGGTTATGGAAATCAGGTTACTGATCATGCAGGAATATTGGATGGGGATAAGCAAGTGAATCAACAAGATGTCACCCACAAAAATGCTTCTGGTGTTCCATTGGAAGAAAAAGGAAAATCCGTTGACGACGAGTCTGGGAAAGTTCAAAATGAAGGGGAGAATTTGGAAGAAATGATGGAAACACCAAATAGGAAAACAAAGGATGGAGTTACACCTAAGAGCATAAACAATGGTGGTTTCCCGGATACTAGTATTGGGATGTCTTCACCTGAAGTAAGAGAATTGAGGACACAAAACTCCCAGGGTTTTGAAAAGGATAATGTGGACAGTATAAATGGCAGTTCAGGACAAGGATTAGCTAAAAAAAAATCAGCAGCTAACAAAGCCAAAGTTAAACAAGCAAAATCTAGGACTGATATTTGGTGGCTGAACCTACGTTATGTTCTAGTTATTCTCATGCAAAGAGGCTCCAACGAGGAAGGTCACAAAGGTCTCTATAGTTTAAACTTCACCTCTAAGGAACAGGAACAAAATGATGATTCCTATACCGTTGCTTTTGAGGATCAGGCCGATGCCAACAACTTTTGTTTTCTACTAGAATCCTATTTTGAAGATTTGGGTGACAATTTTAGTGCCAATGCAGTTCCCATGTCAATACAAGAATTGAATGAAGAAATAATATCTCATGGCGAGAAAGTAGTAGTTGTTAAAAAGAGACAGCTTCAACTTTATGCTGGGCAGCTACTAACTGATGTTGAGATGGCGTTGTGCTCTATAATAGAACAAGATCAAAATGTGCCATAA

Protein sequence

>Msa1217660

MAIAHCFFFHAPFTTRRKPLVIVSSKTGQRKNYLRPKILKTLTKPSLSISPTLLQPPTPQPILSPPQEHELCVDIPADEMHGEDIAGAVDETGEFEGLRVSVDTAKDNRVFGNVSAKEIFKYGGIYLIGAFVFQTVCYLWNSRNEHSNGDLEVSEREKRNILFGGNGKTVEDQLVERKIEEIKLMAREARRIELLEKQGKREEEENGDPEIDGIEKEIGERLLKLKNRIKSKKDSSAALRLNGRGNSAGGGDMSVNPGKEELVFKKKSKFKSPSTKATKTPKGFPGTQDHRVSSVKPQGYGNQVTDHAGILDGDKQVNQQDVTHKNASGVPLEEKGKSVDDESGKVQNEGENLEEMMETPNRKTKDGVTPKSINNGGFPDTSIGMSSPEVRELRTQNSQGFEKDNVDSINGSSGQGLAKKKSAANKAKVKQAKSRTDIWWLNLRYVLVILMQRGSNEEGHKGLYSLNFTSKEQEQNDDSYTVAFEDQADANNFCFLLESYFEDLGDNFSANAVPMSIQELNEEIISHGEKVVVVKKRQLQLYAGQLLTDVEMALCSIIEQDQNVP*