AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0248980

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0248980 MtrunA17_Chr2g0304261 96.730 734 15 1 1 734 1 725 0.0 1453
Msa0248980 MtrunA17_Chr1g0149561 50.535 748 312 14 1 732 1 706 0.0 701
Msa0248980 MtrunA17_Chr4g0075481 42.918 466 185 8 293 681 279 740 7.43e-110 351
Msa0248980 MtrunA17_Chr4g0075481 43.662 142 79 1 24 164 22 163 1.01e-30 129
Msa0248980 MtrunA17_Chr2g0289351 41.778 450 215 9 247 685 29 442 7.19e-102 320
Msa0248980 MtrunA17_Chr7g0237741 36.752 117 69 2 37 150 92 206 4.42e-15 76.3
Msa0248980 MtrunA17_Chr2g0323971 34.188 117 72 2 37 150 95 209 1.09e-13 72.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0248980 AT2G25290.2 53.030 726 297 11 28 734 40 740 0.0 731
Msa0248980 AT2G25290.3 53.030 726 297 11 28 734 40 740 0.0 731
Msa0248980 AT2G25290.4 53.030 726 297 11 28 734 40 740 0.0 731
Msa0248980 AT2G25290.1 53.030 726 297 11 28 734 40 740 0.0 731
Msa0248980 AT4G32070.2 50.928 754 314 13 25 734 36 777 0.0 717
Msa0248980 AT4G32070.1 50.928 754 314 13 25 734 36 777 0.0 717
Msa0248980 AT5G20360.1 47.585 704 334 12 37 730 123 801 0.0 602
Msa0248980 AT5G20360.2 47.585 704 334 12 37 730 123 801 0.0 602
Msa0248980 AT5G20360.3 47.585 704 334 12 37 730 113 791 0.0 602
Msa0248980 AT5G20360.7 47.585 704 334 12 37 730 63 741 0.0 601
Msa0248980 AT5G20360.5 47.585 704 334 12 37 730 33 711 0.0 601
Msa0248980 AT5G20360.6 47.585 704 334 12 37 730 33 711 0.0 601
Msa0248980 AT5G20360.4 47.585 704 334 12 37 730 63 741 0.0 601
Msa0248980 AT1G62390.1 42.282 447 201 6 293 683 294 739 4.25e-106 341
Msa0248980 AT1G62390.1 46.667 135 72 0 27 161 38 172 1.65e-31 132
Msa0248980 AT4G30480.2 35.897 117 70 2 37 150 102 216 1.99e-12 68.9

Find 197 sgRNAs with CRISPR-Local

Find 446 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCATATTGCCTTCCCTTTA+TGG 0.058863 2_2:-33906273 Msa0248980:three_prime_UTR
TCACTTGTCGAATTCAAATT+AGG 0.124452 2_2:-33909910 Msa0248980:CDS
TTTGATTGTTGGGTTGAAAA+TGG 0.242937 2_2:-33911840 Msa0248980:exon
GGAGAAACAAGTGAAGAAAA+TGG 0.245674 2_2:-33911797 Msa0248980:CDS
TTCTTGTCCCCTCTCTGAAT+TGG 0.254754 2_2:-33912212 Msa0248980:five_prime_UTR
CAACAATGCTGAGGAGAATA+TGG 0.273348 2_2:-33910103 Msa0248980:CDS
TAACTTCTCTTAGCTGAAAA+AGG 0.277893 2_2:+33910892 None:intergenic
AACAAAGCTTTACCGTATTT+AGG 0.278095 2_2:+33911491 None:intergenic
TTCCCTTTATGGTTAGGTTT+AGG 0.280429 2_2:-33906262 Msa0248980:three_prime_UTR
GGCGATTAATGAATGCAATT+TGG 0.285660 2_2:-33911528 Msa0248980:CDS
TGATCGTCCTCAGCCTTATT+TGG 0.310717 2_2:+33911104 None:intergenic
AACTGTGAGTGTTGTGAATT+AGG 0.312403 2_2:-33911908 Msa0248980:five_prime_UTR
TGCGATTGCTTAGGTGTTCC+AGG 0.312676 2_2:-33906376 Msa0248980:three_prime_UTR
CAGCTCTAGCATTGTTCAAT+TGG 0.314408 2_2:-33910416 Msa0248980:CDS
TTCAGCACACAACCGTTCTT+AGG 0.315293 2_2:+33910651 None:intergenic
GCTACTGTTCTATATCGTTT+TGG 0.318200 2_2:-33912105 Msa0248980:five_prime_UTR
CACTTGTCGAATTCAAATTA+GGG 0.324137 2_2:-33909909 Msa0248980:CDS
TTCTTGAAAACCTTTGTGTT+TGG 0.329509 2_2:-33912020 Msa0248980:five_prime_UTR
GCTGAGGAGAATATGGAAAA+AGG 0.329603 2_2:-33910096 Msa0248980:CDS
AATCCTAAACCTAACCATAA+AGG 0.332901 2_2:+33906259 None:intergenic
TCTTGTCCCCTCTCTGAATT+GGG 0.333240 2_2:-33912211 Msa0248980:five_prime_UTR
AGAAGAAACAAATCCTGATT+TGG 0.339778 2_2:-33912179 Msa0248980:five_prime_UTR
ATTGCCTTCCCTTTATGGTT+AGG 0.341348 2_2:-33906268 Msa0248980:three_prime_UTR
TCGAACAAGCGAAACTTTCC+TGG 0.341770 2_2:-33910191 Msa0248980:CDS
GGACAACATTGCACCAAATA+AGG 0.342512 2_2:-33911117 Msa0248980:CDS
GAGTTTGCGAGTTCCTTTAC+AGG 0.346302 2_2:-33906346 Msa0248980:three_prime_UTR
TATGATGACAATAGCAATTC+AGG 0.360186 2_2:+33909473 None:intergenic
TTATGAGGCTTTGAATAGAT+TGG 0.361909 2_2:-33911453 Msa0248980:CDS
AGGAGTTTCATCCTTTCGTT+TGG 0.362101 2_2:-33909618 Msa0248980:CDS
TCATAGAACGGATCGTGATT+AGG 0.363233 2_2:+33910720 None:intergenic
TACGAAGGCTTTCTTGCTCT+TGG 0.363383 2_2:-33910225 Msa0248980:CDS
TTTCATTCATTTCAAATTCT+GGG 0.369069 2_2:-33912289 Msa0248980:five_prime_UTR
CTCGCAAACTCCTACATTCC+TGG 0.371435 2_2:+33906358 None:intergenic
TACCTCCTGCCATGTCAAAT+AGG 0.379171 2_2:+33910454 None:intergenic
GTGTTTACCATTTGATTGTT+GGG 0.379484 2_2:-33911850 Msa0248980:five_prime_UTR
AGCTCTAGCATTGTTCAATT+GGG 0.381899 2_2:-33910415 Msa0248980:CDS
TGAGAGAAAGGTTCAAACTT+TGG 0.382368 2_2:+33912334 None:intergenic
TAACATGTCTTGTTCTTGTT+GGG 0.393983 2_2:-33912384 Msa0248980:five_prime_UTR
CATACCCATCTCTCCAAATC+AGG 0.403940 2_2:+33912166 None:intergenic
TGTGTTTACCATTTGATTGT+TGG 0.406876 2_2:-33911851 Msa0248980:five_prime_UTR
ATGGGTATGTTTCTGTTCAA+TGG 0.407131 2_2:-33912152 Msa0248980:five_prime_UTR
TAAGCAGAAAGAGGATGTTA+AGG 0.407983 2_2:-33911024 Msa0248980:CDS
TCTTTAAATTAAAATTAGAT+TGG 0.411652 2_2:+33906095 None:intergenic
GAATTGAAGTGGGCTGAAAC+AGG 0.411735 2_2:-33910783 Msa0248980:CDS
ATAACATGTCTTGTTCTTGT+TGG 0.412806 2_2:-33912385 Msa0248980:five_prime_UTR
TGCGAGTTCCTTTACAGGTT+GGG 0.413560 2_2:-33906341 Msa0248980:three_prime_UTR
TGTTCTTGTATACAACTTTG+AGG 0.414629 2_2:-33912076 Msa0248980:five_prime_UTR
TCCAACGCCATGATATTATT+CGG 0.416082 2_2:+33911389 None:intergenic
TCAAATAACACTGCTGTAGA+TGG 0.416089 2_2:-33909787 Msa0248980:intron
TGATGTGGAAAAGGTTGAAA+TGG 0.417154 2_2:-33910682 Msa0248980:CDS
ATCCTAAACCTAACCATAAA+GGG 0.418696 2_2:+33906260 None:intergenic
TATAAGATGGGCTCAATTGC+CGG 0.418935 2_2:-33910925 Msa0248980:CDS
ACCTCCACTACCGGGTTGGA+TGG 0.420004 2_2:-33910030 Msa0248980:CDS
GAGAAACAAGTGAAGAAAAT+GGG 0.422130 2_2:-33911796 Msa0248980:CDS
TTGATTGTTGGGTTGAAAAT+GGG 0.422553 2_2:-33911839 Msa0248980:exon
ACAAGAACTGCTCCTAGGCT+TGG 0.427912 2_2:+33910855 None:intergenic
ACCCGTATGGCATGAATCAT+TGG 0.428713 2_2:-33909884 Msa0248980:CDS
AAATTAAAAGTTCGTATGAA+TGG 0.429486 2_2:-33910314 Msa0248980:CDS
TTCAACATTCAAATCTGAGT+TGG 0.438805 2_2:-33912239 Msa0248980:five_prime_UTR
AACATTACAGCTACATCTGT+TGG 0.438941 2_2:+33909823 None:intergenic
TCTTCAACAACTTGAAGAAA+AGG 0.439480 2_2:+33909532 None:intergenic
TCAACATTCAAATCTGAGTT+GGG 0.441633 2_2:-33912238 Msa0248980:five_prime_UTR
TGTAATATATTGTATTGGAT+TGG 0.442624 2_2:-33911879 Msa0248980:five_prime_UTR
CTCAGTGAAACCTCCACTAC+CGG 0.444276 2_2:-33910039 Msa0248980:CDS
GGAATCTGAAACGTGAGAAA+TGG 0.446320 2_2:+33912355 None:intergenic
GCTCATCTTGTGTTGAGGAT+TGG 0.446370 2_2:-33910611 Msa0248980:CDS
TTCTTTAGAAGAATCTTCTT+CGG 0.448789 2_2:+33910350 None:intergenic
TAAGAGAAGTTATTTGTGAC+AGG 0.451205 2_2:-33910881 Msa0248980:CDS
ATGCTAGAGCTGTCATCTCT+TGG 0.452894 2_2:+33910427 None:intergenic
GGGTTTGTAATATATTGTAT+TGG 0.454850 2_2:-33911884 Msa0248980:five_prime_UTR
GAGTTTATACAGAAAGCATT+GGG 0.455727 2_2:-33906231 Msa0248980:three_prime_UTR
AAAGATGGTTCAACATAATC+CGG 0.460718 2_2:+33911293 None:intergenic
TGCTATATGCAGATGGGACT+TGG 0.465994 2_2:-33911563 Msa0248980:CDS
CGATACTCTTCTTCTGAACA+AGG 0.468671 2_2:+33909592 None:intergenic
TCTGAAGGCACATCAAAAGA+TGG 0.469416 2_2:+33911278 None:intergenic
CAAGAACTGCTCCTAGGCTT+GGG 0.471193 2_2:+33910856 None:intergenic
CTTAGGTGTTCCAGGAATGT+AGG 0.471872 2_2:-33906368 Msa0248980:three_prime_UTR
GTCGTATGTGCGGAGTAATA+TGG 0.475460 2_2:-33911591 Msa0248980:CDS
TCTATCTTCCCAACCTGTAA+AGG 0.476322 2_2:+33906333 None:intergenic
CAAATCCTGATTTGGAGAGA+TGG 0.476951 2_2:-33912171 Msa0248980:five_prime_UTR
TGAGTTTATACAGAAAGCAT+TGG 0.477279 2_2:-33906232 Msa0248980:three_prime_UTR
CAGAAAGAATATGCAAAAGC+TGG 0.482907 2_2:-33910288 Msa0248980:CDS
GGGGAAATGTGCATATGTCT+AGG 0.483385 2_2:-33910395 Msa0248980:CDS
AAAAGTGCACTTGAAGATAG+AGG 0.485144 2_2:-33911350 Msa0248980:CDS
GTCACAGATAAATCTCTTGT+GGG 0.488756 2_2:-33909953 Msa0248980:CDS
GAAACTAGAAGAGAAGAAAG+AGG 0.489348 2_2:-33911141 Msa0248980:CDS
TGGGACTTGGTGAGTACCCT+AGG 0.490644 2_2:-33911550 Msa0248980:CDS
TAACCCATCCAACCCGGTAG+TGG 0.491029 2_2:+33910026 None:intergenic
GAATTGCTATTGTCATCATA+AGG 0.495158 2_2:-33909470 Msa0248980:intron
GAAGAGAGCGAGGTGTTATG+AGG 0.496712 2_2:-33911468 Msa0248980:CDS
CAAAATTGATGAAATAGTAC+AGG 0.497762 2_2:-33909678 Msa0248980:CDS
AATTAAAAGTTCGTATGAAT+GGG 0.498990 2_2:-33910313 Msa0248980:CDS
TACTTTGTTGTTTATTGCCA+CGG 0.500099 2_2:-33911726 Msa0248980:CDS
TATTTGCATTGCGATTGCTT+AGG 0.501800 2_2:-33906385 Msa0248980:three_prime_UTR
GTGGGCTGAAACAGGATCAC+AGG 0.502534 2_2:-33910775 Msa0248980:CDS
ATCAGATGAAACTGCTGAGC+TGG 0.506220 2_2:-33909989 Msa0248980:CDS
TTCCAATGATTCATGCCATA+CGG 0.509759 2_2:+33909882 None:intergenic
AAATCCTGATTTGGAGAGAT+GGG 0.510228 2_2:-33912170 Msa0248980:five_prime_UTR
CTTGAAGTTACTCCTAAATA+CGG 0.513313 2_2:-33911503 Msa0248980:CDS
GTAATAAGATGTTTCAAAAG+AGG 0.513730 2_2:-33911682 Msa0248980:CDS
ATTTGACAAGAACTGCTCCT+AGG 0.517827 2_2:+33910850 None:intergenic
GCCGAATAATATCATGGCGT+TGG 0.518149 2_2:-33911390 Msa0248980:CDS
GGTGAGAGATTATGAGAGAA+AGG 0.521684 2_2:+33912322 None:intergenic
GTATCATTATCATACGCATT+CGG 0.522823 2_2:+33911746 None:intergenic
TCGTCTGAATGATGTGGAAA+AGG 0.524502 2_2:-33910691 Msa0248980:CDS
CCTCCACTACCGGGTTGGAT+GGG 0.524928 2_2:-33910029 Msa0248980:CDS
ATCTTCGAGGAGCGATGGTA+AGG 0.525211 2_2:-33911658 Msa0248980:CDS
TCAAATTAGGGCTACCCGTA+TGG 0.527716 2_2:-33909897 Msa0248980:CDS
TCCAATGATTCATGCCATAC+GGG 0.528365 2_2:+33909883 None:intergenic
GGTTGGGAAGATAGAGATGC+AGG 0.530174 2_2:-33906325 Msa0248980:three_prime_UTR
TTCCTTCAATTCTTGAGCCG+TGG 0.532904 2_2:+33911709 None:intergenic
ATTGAGAAGTTTGAACATGC+AGG 0.538923 2_2:-33909853 Msa0248980:CDS
TTGCATTCATTAATCGCCCT+AGG 0.542158 2_2:+33911533 None:intergenic
TTGCGAGTTCCTTTACAGGT+TGG 0.543117 2_2:-33906342 Msa0248980:three_prime_UTR
TTGCTTCTCTACAATTTCAT+CGG 0.546575 2_2:+33911199 None:intergenic
TAATAAGATGTTTCAAAAGA+GGG 0.549709 2_2:-33911681 Msa0248980:CDS
GGGAAATGTGCATATGTCTA+GGG 0.549993 2_2:-33910394 Msa0248980:CDS
TGCCACGGCTCAAGAATTGA+AGG 0.552256 2_2:-33911711 Msa0248980:CDS
GCTCAAGAATTGAAGGAAGA+AGG 0.553736 2_2:-33911704 Msa0248980:CDS
TGTTAGCTCATCTTGTGTTG+AGG 0.554112 2_2:-33910616 Msa0248980:CDS
TTCAAATAACCCATCCAACC+CGG 0.554807 2_2:+33910020 None:intergenic
TTCTTGCTCTTGGTCAGCAG+CGG 0.555376 2_2:-33910215 Msa0248980:CDS
TGAGAAAATTGAGTTGCCTC+CGG 0.555411 2_2:-33911312 Msa0248980:CDS
TTCAGAGGCTGTTGAAGAGA+CGG 0.558155 2_2:-33910499 Msa0248980:CDS
GAAGCAACCTATGTGAGTGC+TGG 0.559835 2_2:+33909500 None:intergenic
ATGAAAATCTAAGTATCTGT+CGG 0.561644 2_2:+33910542 None:intergenic
CAAGGCCTATTTGACATGGC+AGG 0.561952 2_2:-33910459 Msa0248980:CDS
GTAGTAATAGAAAAGAAGAA+AGG 0.563258 2_2:-33906426 Msa0248980:three_prime_UTR
GACACATCTATATGATCTCT+CGG 0.563958 2_2:+33911611 None:intergenic
TGTGACAGGTTCCCAAGCCT+AGG 0.568790 2_2:-33910867 Msa0248980:CDS
GGCGTTGGAGATCTCAGATA+AGG 0.572016 2_2:-33911375 Msa0248980:CDS
GTGAGTGTTGTGAATTAGGA+GGG 0.575212 2_2:-33911904 Msa0248980:five_prime_UTR
CTGAGCTGGCGGCAAACATG+AGG 0.575937 2_2:-33909975 Msa0248980:CDS
GGCTGCATGCTATATGCAGA+TGG 0.576613 2_2:-33911570 Msa0248980:CDS
GGTCACAGATAAATCTCTTG+TGG 0.578048 2_2:-33909954 Msa0248980:CDS
CCCATCCAACCCGGTAGTGG+AGG 0.578546 2_2:+33910029 None:intergenic
GAGGGATCTTCGAGGAGCGA+TGG 0.582733 2_2:-33911663 Msa0248980:CDS
TTGATGAAATAGTACAGGCA+TGG 0.582822 2_2:-33909673 Msa0248980:CDS
ATGGATAATGCTCCTAAGAA+CGG 0.586076 2_2:-33910663 Msa0248980:CDS
CATAGAGCCAGCACTCACAT+AGG 0.587070 2_2:-33909507 Msa0248980:three_prime_UTR
GATGGAGCCGAATAATATCA+TGG 0.587956 2_2:-33911396 Msa0248980:CDS
GCTCTAGCATTGTTCAATTG+GGG 0.591057 2_2:-33910414 Msa0248980:CDS
TGCATTCATTAATCGCCCTA+GGG 0.591150 2_2:+33911534 None:intergenic
CTTCGGATGAAGAATTGAAG+TGG 0.591646 2_2:-33910794 Msa0248980:CDS
AAGTTCAATAATCTAGTACA+AGG 0.593733 2_2:+33906119 None:intergenic
AGACGAAGTTTCTCATAGAA+CGG 0.594449 2_2:+33910708 None:intergenic
GAACAAGGGTTCCAAACGAA+AGG 0.595231 2_2:+33909607 None:intergenic
TGAAACCTCCACTACCGGGT+TGG 0.596224 2_2:-33910034 Msa0248980:CDS
GCAGAAAGAGGATGTTAAGG+AGG 0.597588 2_2:-33911021 Msa0248980:CDS
TTTCAAAAGAGGGATCTTCG+AGG 0.598758 2_2:-33911671 Msa0248980:CDS
CACAAATCCCAATTCAGAGA+GGG 0.599297 2_2:+33912204 None:intergenic
ACCTCTGTGGAGGGCCATGT+CGG 0.600718 2_2:+33910138 None:intergenic
CTCATACAAGCTCAAAGGCA+TGG 0.603320 2_2:+33909561 None:intergenic
TGATTGTTGGGTTGAAAATG+GGG 0.607318 2_2:-33911838 Msa0248980:exon
CAGCAGTGTTATTTGAACAG+TGG 0.607319 2_2:+33909794 None:intergenic
TCTGAAACGTGAGAAATGGA+AGG 0.616454 2_2:+33912359 None:intergenic
GTCAAATATAGAGATCAAGA+AGG 0.619076 2_2:-33910834 Msa0248980:CDS
TTCGGATGAAGAATTGAAGT+GGG 0.621321 2_2:-33910793 Msa0248980:CDS
TCATCTTTACAACAATGCTG+AGG 0.623420 2_2:-33910112 Msa0248980:CDS
TGTGAGTGTTGTGAATTAGG+AGG 0.623584 2_2:-33911905 Msa0248980:five_prime_UTR
AAAGTGCACTTGAAGATAGA+GGG 0.624772 2_2:-33911349 Msa0248980:CDS
TCAGTGAAACCTCCACTACC+GGG 0.624891 2_2:-33910038 Msa0248980:CDS
AGCAACTCATACAAGCTCAA+AGG 0.626181 2_2:+33909556 None:intergenic
ACTCAACAAGTAGTTTACAA+TGG 0.626456 2_2:+33906163 None:intergenic
TAAACCTAACCATAAAGGGA+AGG 0.628411 2_2:+33906264 None:intergenic
ATGTGCATATGTCTAGGGCA+AGG 0.630423 2_2:-33910389 Msa0248980:CDS
AATGGATAAATTACAGAACA+AGG 0.638185 2_2:+33906181 None:intergenic
ATATAGATGTGTCGTATGTG+CGG 0.638921 2_2:-33911601 Msa0248980:CDS
TAGCTTCTACTATATACAGT+CGG 0.639708 2_2:+33910745 None:intergenic
CGGTTGTGTGCTGAAATCAA+AGG 0.641172 2_2:-33910643 Msa0248980:CDS
CATTGCACCAAATAAGGCTG+AGG 0.641965 2_2:-33911111 Msa0248980:CDS
GGCCTATTTGACATGGCAGG+AGG 0.642993 2_2:-33910456 Msa0248980:CDS
ACTACTGAGTGCATAATACC+AGG 0.644085 2_2:+33910173 None:intergenic
TGGGATGAAGCTCTATTCAG+AGG 0.644129 2_2:-33910514 Msa0248980:CDS
GAAACTTCGTCTGAATGATG+TGG 0.644851 2_2:-33910697 Msa0248980:CDS
AAGATGAAGAACCTCTGTGG+AGG 0.649172 2_2:+33910128 None:intergenic
GGGACTTGGTGAGTACCCTA+GGG 0.649406 2_2:-33911549 Msa0248980:CDS
TGACTTGATCACAATCACTT+CGG 0.649854 2_2:-33910811 Msa0248980:CDS
AATTGTAGAGAAGCAAGCTG+AGG 0.649987 2_2:-33911192 Msa0248980:CDS
ACTAGAAGAGAAGAAAGAGG+AGG 0.651831 2_2:-33911138 Msa0248980:CDS
GCTGCATGCTATATGCAGAT+GGG 0.652084 2_2:-33911569 Msa0248980:CDS
GATACTCTTCTTCTGAACAA+GGG 0.652197 2_2:+33909593 None:intergenic
AGATGAAGAACCTCTGTGGA+GGG 0.653251 2_2:+33910129 None:intergenic
AGCGCAAGGCCTATTTGACA+TGG 0.654459 2_2:-33910463 Msa0248980:CDS
AAGCTTTGTTGAAGAGAGCG+AGG 0.655766 2_2:-33911478 Msa0248980:CDS
AATGGGAATCATAGTAACGA+CGG 0.659552 2_2:-33911779 Msa0248980:CDS
AGATGAAACTGCTGAGCTGG+CGG 0.671158 2_2:-33909986 Msa0248980:CDS
TGGGCTGAAACAGGATCACA+GGG 0.676880 2_2:-33910774 Msa0248980:CDS
ACTAGAAGAGAAACATGCTG+AGG 0.682343 2_2:-33911165 Msa0248980:CDS
ACAAATCCCAATTCAGAGAG+GGG 0.684300 2_2:+33912205 None:intergenic
GTTACAAGTGAAGAAGCGCA+AGG 0.684935 2_2:-33910477 Msa0248980:CDS
TCACAGATAAATCTCTTGTG+GGG 0.699010 2_2:-33909952 Msa0248980:CDS
GATGGTTCAACATAATCCGG+AGG 0.699395 2_2:+33911296 None:intergenic
ACACAAATCCCAATTCAGAG+AGG 0.705582 2_2:+33912203 None:intergenic
GTAATATAGATTTACCGACA+TGG 0.713914 2_2:-33910152 Msa0248980:CDS
ACCGACATGGCCCTCCACAG+AGG 0.742103 2_2:-33910139 Msa0248980:CDS
GTAAAGATGAAGAACCTCTG+TGG 0.749593 2_2:+33910125 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTGAAATACTAATATATTT+TGG - chr2_2:33909790-33909809 Msa0248980:CDS 10.0%
!! TCAGTTAAAAAAAAAAAAAA+AGG - chr2_2:33911587-33911606 Msa0248980:CDS 10.0%
!! CAGTTAAAAAAAAAAAAAAA+GGG - chr2_2:33911588-33911607 Msa0248980:CDS 10.0%
!! AGTTAAAAAAAAAAAAAAAG+GGG - chr2_2:33911589-33911608 Msa0248980:CDS 10.0%
!! TCTTTAAATTAAAATTAGAT+TGG + chr2_2:33912493-33912512 None:intergenic 10.0%
!!! TAATTTTAATTTAAAGAAAC+TGG - chr2_2:33912496-33912515 Msa0248980:five_prime_UTR 10.0%
!!! AAAATCTGACTTAATTTTAA+TGG + chr2_2:33908340-33908359 None:intergenic 15.0%
!!! ATGGTTTTAAATTATATGAA+AGG - chr2_2:33910100-33910119 Msa0248980:CDS 15.0%
!! TAGATGATTAAATAACAAAT+GGG - chr2_2:33910610-33910629 Msa0248980:CDS 15.0%
!! AAAAAAAAAAAAAAAGAGGT+AGG - chr2_2:33910708-33910727 Msa0248980:CDS 15.0%
!!! ATTTTATTTTTTTTGTGAAC+AGG + chr2_2:33910919-33910938 None:intergenic 15.0%
!!! GTATAGTTTGTATTATAATT+TGG - chr2_2:33911245-33911264 Msa0248980:CDS 15.0%
!! TATTTATAACTTAAGTGTTT+CGG - chr2_2:33911284-33911303 Msa0248980:CDS 15.0%
!! AAAAAAACTTATTGAAAACA+AGG - chr2_2:33911385-33911404 Msa0248980:CDS 15.0%
!! AAAAAACTTATTGAAAACAA+GGG - chr2_2:33911386-33911405 Msa0248980:CDS 15.0%
!! AATGAATGAAAAACTTATCT+GGG + chr2_2:33906287-33906306 None:intergenic 20.0%
!! AAATGAATGAAAAACTTATC+TGG + chr2_2:33906288-33906307 None:intergenic 20.0%
!!! TTTTCATTCATTTCAAATTC+TGG - chr2_2:33906295-33906314 Msa0248980:three_prime_UTR 20.0%
!! TTTCATTCATTTCAAATTCT+GGG - chr2_2:33906296-33906315 Msa0248980:three_prime_UTR 20.0%
!! TGTAATATATTGTATTGGAT+TGG - chr2_2:33906706-33906725 Msa0248980:intron 20.0%
!! TAATAAGATGTTTCAAAAGA+GGG - chr2_2:33906904-33906923 Msa0248980:intron 20.0%
!! AAATTAAAAGTTCGTATGAA+TGG - chr2_2:33908271-33908290 Msa0248980:intron 20.0%
!! AATTAAAAGTTCGTATGAAT+GGG - chr2_2:33908272-33908291 Msa0248980:intron 20.0%
!! AACAGAATATTATATTCACA+AGG - chr2_2:33909485-33909504 Msa0248980:three_prime_UTR 20.0%
!! AATATCTAAATTGAGCAATT+TGG - chr2_2:33909664-33909683 Msa0248980:CDS 20.0%
!!! TTTTTTGTTCAAATCTGTTT+AGG - chr2_2:33909817-33909836 Msa0248980:CDS 20.0%
!!! CTGTTTTTAACTATATATCA+AGG + chr2_2:33910003-33910022 None:intergenic 20.0%
!! AATTGTAATTTGAGAATTTG+AGG - chr2_2:33910041-33910060 Msa0248980:CDS 20.0%
!! ATTGTAATTTGAGAATTTGA+GGG - chr2_2:33910042-33910061 Msa0248980:CDS 20.0%
!!! TTTCTGGTATCAATATATTT+TGG + chr2_2:33910289-33910308 None:intergenic 20.0%
!! ATATATTGATACCAGAAATA+AGG - chr2_2:33910291-33910310 Msa0248980:CDS 20.0%
!! GTAGATGATTAAATAACAAA+TGG - chr2_2:33910609-33910628 Msa0248980:CDS 20.0%
!! AGATGATTAAATAACAAATG+GGG - chr2_2:33910611-33910630 Msa0248980:CDS 20.0%
!!! GAATTTTCAATTGAATCAAT+AGG - chr2_2:33911106-33911125 Msa0248980:CDS 20.0%
!! AGTTTGTATTATAATTTGGT+TGG - chr2_2:33911249-33911268 Msa0248980:CDS 20.0%
!! AAAAACTTATTGAAAACAAG+GGG - chr2_2:33911387-33911406 Msa0248980:CDS 20.0%
!!! ATTGGTGTTCTTAAATTTAA+GGG + chr2_2:33911538-33911557 None:intergenic 20.0%
!! TGAAGATATATTTCAATTGA+GGG + chr2_2:33911570-33911589 None:intergenic 20.0%
!!! TTTTAGCAACACAATTTTAA+AGG + chr2_2:33911832-33911851 None:intergenic 20.0%
!!! TAAAATTGTGTTGCTAAAAT+TGG - chr2_2:33911833-33911852 Msa0248980:exon 20.0%
!!! TTTTAGTCCTTAAAATTGTT+AGG + chr2_2:33911938-33911957 None:intergenic 20.0%
!!! ATTTTATGAACAAAATCCAA+CGG + chr2_2:33912063-33912082 None:intergenic 20.0%
!! ATGTTGTTCTTTTTCTTTTG+TGG - chr2_2:33906133-33906152 Msa0248980:three_prime_UTR 25.0%
! CAATAAAAAACCAAACACAA+AGG + chr2_2:33906578-33906597 None:intergenic 25.0%
!!! CTTTGTGTTTGGTTTTTTAT+TGG - chr2_2:33906576-33906595 Msa0248980:intron 25.0%
! TATGCAAAAGGGAAAAAAAA+AGG - chr2_2:33906609-33906628 Msa0248980:intron 25.0%
! GGGTTTGTAATATATTGTAT+TGG - chr2_2:33906701-33906720 Msa0248980:intron 25.0%
! GTAATAAGATGTTTCAAAAG+AGG - chr2_2:33906903-33906922 Msa0248980:intron 25.0%
! AAAAATTGATAAGCAGAAAG+AGG - chr2_2:33907552-33907571 Msa0248980:intron 25.0%
! GTCAATGAAGAAAAAAGTAA+TGG - chr2_2:33907586-33907605 Msa0248980:intron 25.0%
!!! AAAACAGCAAAACTTGTTTT+TGG - chr2_2:33907631-33907650 Msa0248980:intron 25.0%
!!! TTTTTGGTGATGATATAAGA+TGG - chr2_2:33907647-33907666 Msa0248980:intron 25.0%
!!! TTTTGGTGATGATATAAGAT+GGG - chr2_2:33907648-33907667 Msa0248980:intron 25.0%
! ATGAAAATCTAAGTATCTGT+CGG + chr2_2:33908046-33908065 None:intergenic 25.0%
!! TACTTAGATTTTCATGAACT+TGG - chr2_2:33908051-33908070 Msa0248980:intron 25.0%
!! ACTTAGATTTTCATGAACTT+GGG - chr2_2:33908052-33908071 Msa0248980:intron 25.0%
!! TTCTTTAGAAGAATCTTCTT+CGG + chr2_2:33908238-33908257 None:intergenic 25.0%
!! ATTAAGTCAGATTTTTACGA+AGG - chr2_2:33908345-33908364 Msa0248980:intron 25.0%
! CAAAATTGATGAAATAGTAC+AGG - chr2_2:33908907-33908926 Msa0248980:intron 25.0%
! ACTTTCAGATAAGCAAATAA+CGG + chr2_2:33909176-33909195 None:intergenic 25.0%
!! TCATTTTCATATCTGTAAGA+AGG + chr2_2:33909294-33909313 None:intergenic 25.0%
! TATATACTGAAGTCCTTATT+GGG + chr2_2:33909368-33909387 None:intergenic 25.0%
! TATTAAAACACCCATTAAGA+GGG - chr2_2:33909437-33909456 Msa0248980:intron 25.0%
! AATGCTAATGTCAATAACAT+AGG - chr2_2:33909580-33909599 Msa0248980:CDS 25.0%
! TTATATGTGTGCATATGTAT+CGG + chr2_2:33909609-33909628 None:intergenic 25.0%
! TGTTTAGGAAAAATTAGAAG+AGG - chr2_2:33909832-33909851 Msa0248980:CDS 25.0%
! AGAAATGTCTATGATAGTAA+TGG + chr2_2:33909861-33909880 None:intergenic 25.0%
! TTGTAATTTGAGAATTTGAG+GGG - chr2_2:33910043-33910062 Msa0248980:CDS 25.0%
! AAATTATATGAAAGGAACCA+TGG - chr2_2:33910108-33910127 Msa0248980:CDS 25.0%
!!! ATATATTTTGGTTCCTATCA+AGG + chr2_2:33910277-33910296 None:intergenic 25.0%
!! GCTATATTATTCCTTATTTC+TGG + chr2_2:33910305-33910324 None:intergenic 25.0%
! TTATTATAATGTTAGACCCA+CGG + chr2_2:33910585-33910604 None:intergenic 25.0%
! TTGATATACAAGAATTGTCA+TGG + chr2_2:33910798-33910817 None:intergenic 25.0%
!!! TTGACTTGGATAAACTTTAT+TGG - chr2_2:33910844-33910863 Msa0248980:CDS 25.0%
! AGTTATACTTATTGTATCGA+AGG + chr2_2:33911005-33911024 None:intergenic 25.0%
! ACAATAAGTATAACTTCCTT+TGG - chr2_2:33911010-33911029 Msa0248980:CDS 25.0%
! TTTCTAACTAATCTTCATAG+TGG + chr2_2:33911207-33911226 None:intergenic 25.0%
! ATTATTTCAATGTGCTCTTT+AGG - chr2_2:33911352-33911371 Msa0248980:CDS 25.0%
! CATATATTCAAATCATATGC+AGG + chr2_2:33911500-33911519 None:intergenic 25.0%
!! GATTGGTGTTCTTAAATTTA+AGG + chr2_2:33911539-33911558 None:intergenic 25.0%
! CTGAAGATATATTTCAATTG+AGG + chr2_2:33911571-33911590 None:intergenic 25.0%
! AGGCTATTTAAATCATATTC+AGG + chr2_2:33911783-33911802 None:intergenic 25.0%
! ATATGATTTAAATAGCCTCT+TGG - chr2_2:33911785-33911804 Msa0248980:CDS 25.0%
!! ACGACATTATTTAATTTACG+AGG - chr2_2:33911866-33911885 Msa0248980:five_prime_UTR 25.0%
! GTAGTAATAGAAAAGAAGAA+AGG - chr2_2:33912159-33912178 Msa0248980:five_prime_UTR 25.0%
! AATGGATAAATTACAGAACA+AGG + chr2_2:33912407-33912426 None:intergenic 25.0%
! AAGTTCAATAATCTAGTACA+AGG + chr2_2:33912469-33912488 None:intergenic 25.0%
! ATAACATGTCTTGTTCTTGT+TGG - chr2_2:33906200-33906219 Msa0248980:three_prime_UTR 30.0%
! TAACATGTCTTGTTCTTGTT+GGG - chr2_2:33906201-33906220 Msa0248980:three_prime_UTR 30.0%
TTCAACATTCAAATCTGAGT+TGG - chr2_2:33906346-33906365 Msa0248980:three_prime_UTR 30.0%
TCAACATTCAAATCTGAGTT+GGG - chr2_2:33906347-33906366 Msa0248980:three_prime_UTR 30.0%
AGAAGAAACAAATCCTGATT+TGG - chr2_2:33906406-33906425 Msa0248980:three_prime_UTR 30.0%
TGTTCTTGTATACAACTTTG+AGG - chr2_2:33906509-33906528 Msa0248980:intron 30.0%
TTCTTGAAAACCTTTGTGTT+TGG - chr2_2:33906565-33906584 Msa0248980:intron 30.0%
!! GTTGTTTTGTGTATGCAAAA+GGG - chr2_2:33906598-33906617 Msa0248980:intron 30.0%
TGTGTTTACCATTTGATTGT+TGG - chr2_2:33906734-33906753 Msa0248980:intron 30.0%
GTGTTTACCATTTGATTGTT+GGG - chr2_2:33906735-33906754 Msa0248980:intron 30.0%
! TTTTCAACCCAACAATCAAA+TGG + chr2_2:33906745-33906764 None:intergenic 30.0%
!! TTTGATTGTTGGGTTGAAAA+TGG - chr2_2:33906745-33906764 Msa0248980:intron 30.0%
!! TTGATTGTTGGGTTGAAAAT+GGG - chr2_2:33906746-33906765 Msa0248980:intron 30.0%
GAGAAACAAGTGAAGAAAAT+GGG - chr2_2:33906789-33906808 Msa0248980:intron 30.0%
GTATCATTATCATACGCATT+CGG + chr2_2:33906842-33906861 None:intergenic 30.0%
!! TACTTTGTTGTTTATTGCCA+CGG - chr2_2:33906859-33906878 Msa0248980:intron 30.0%
CTTGAAGTTACTCCTAAATA+CGG - chr2_2:33907082-33907101 Msa0248980:intron 30.0%
AACAAAGCTTTACCGTATTT+AGG + chr2_2:33907097-33907116 None:intergenic 30.0%
!! TTATGAGGCTTTGAATAGAT+TGG - chr2_2:33907132-33907151 Msa0248980:intron 30.0%
!!! TGTTAGTACTGTTTTGAAGA+TGG - chr2_2:33907171-33907190 Msa0248980:intron 30.0%
AAAGATGGTTCAACATAATC+CGG + chr2_2:33907295-33907314 None:intergenic 30.0%
! TTTTCTTTTGCCTTTTCTGA+AGG + chr2_2:33907325-33907344 None:intergenic 30.0%
GAAAAAGAGCAAAAAAGAGA+AGG - chr2_2:33907354-33907373 Msa0248980:intron 30.0%
TTGCTTCTCTACAATTTCAT+CGG + chr2_2:33907389-33907408 None:intergenic 30.0%
GCGTAATAAATCGAAAAAGA+AGG - chr2_2:33907519-33907538 Msa0248980:intron 30.0%
!!! CTGCTTATCAATTTTTTCCT+TGG + chr2_2:33907548-33907567 None:intergenic 30.0%
!!! ACAAGTTTTGCTGTTTTCTT+AGG + chr2_2:33907628-33907647 None:intergenic 30.0%
TAACTTCTCTTAGCTGAAAA+AGG + chr2_2:33907696-33907715 None:intergenic 30.0%
TAAGAGAAGTTATTTGTGAC+AGG - chr2_2:33907704-33907723 Msa0248980:intron 30.0%
GTCAAATATAGAGATCAAGA+AGG - chr2_2:33907751-33907770 Msa0248980:intron 30.0%
TAGCTTCTACTATATACAGT+CGG + chr2_2:33907843-33907862 None:intergenic 30.0%
AACTGTTCAAAAATCACGTT+GGG - chr2_2:33908013-33908032 Msa0248980:intron 30.0%
GTAATATAGATTTACCGACA+TGG - chr2_2:33908433-33908452 Msa0248980:intron 30.0%
TCACTTGTCGAATTCAAATT+AGG - chr2_2:33908675-33908694 Msa0248980:intron 30.0%
CACTTGTCGAATTCAAATTA+GGG - chr2_2:33908676-33908695 Msa0248980:intron 30.0%
ATACTAACACTTCTTCTAAC+AGG - chr2_2:33908875-33908894 Msa0248980:intron 30.0%
TCTTCAACAACTTGAAGAAA+AGG + chr2_2:33909056-33909075 None:intergenic 30.0%
TATGATGACAATAGCAATTC+AGG + chr2_2:33909115-33909134 None:intergenic 30.0%
! GAATTGCTATTGTCATCATA+AGG - chr2_2:33909115-33909134 Msa0248980:intron 30.0%
CTTTCAGATAAGCAAATAAC+GGG + chr2_2:33909175-33909194 None:intergenic 30.0%
AGCTGTATTGTGTAGAATAT+TGG - chr2_2:33909319-33909338 Msa0248980:intron 30.0%
AGCAAATGAAATTCCCAATA+AGG - chr2_2:33909352-33909371 Msa0248980:intron 30.0%
CTATATACTGAAGTCCTTAT+TGG + chr2_2:33909369-33909388 None:intergenic 30.0%
CTATTAAAACACCCATTAAG+AGG - chr2_2:33909436-33909455 Msa0248980:intron 30.0%
GTTATTGACATTAGCATTGT+CGG + chr2_2:33909578-33909597 None:intergenic 30.0%
TGTAATTTGAGAATTTGAGG+GGG - chr2_2:33910044-33910063 Msa0248980:CDS 30.0%
!!! GGATTTTAAAGTCTCCATAT+TGG - chr2_2:33910161-33910180 Msa0248980:CDS 30.0%
CTTTACATTGCAGTAAAATG+AGG + chr2_2:33910215-33910234 None:intergenic 30.0%
! CTCATTTTACTGCAATGTAA+AGG - chr2_2:33910213-33910232 Msa0248980:CDS 30.0%
!!! AAGGTTTTAAATTGTGGTTG+TGG + chr2_2:33910258-33910277 None:intergenic 30.0%
!!! CCTATCAAGGTTTTAAATTG+TGG + chr2_2:33910264-33910283 None:intergenic 30.0%
! CCACAATTTAAAACCTTGAT+AGG - chr2_2:33910261-33910280 Msa0248980:CDS 30.0%
!! TCGTTGTTTTCTGTTTAAGA+GGG + chr2_2:33910354-33910373 None:intergenic 30.0%
!! ATCGTTGTTTTCTGTTTAAG+AGG + chr2_2:33910355-33910374 None:intergenic 30.0%
ACGATAAAAGTGAAGAAAAC+AGG - chr2_2:33910370-33910389 Msa0248980:CDS 30.0%
GGTTATAAAGGAAGTTGAAA+GGG + chr2_2:33910466-33910485 None:intergenic 30.0%
TGGTTATAAAGGAAGTTGAA+AGG + chr2_2:33910467-33910486 None:intergenic 30.0%
GGTTAGTATGATGGTTATAA+AGG + chr2_2:33910478-33910497 None:intergenic 30.0%
! TAGACTATTGGTTAGTATGA+TGG + chr2_2:33910487-33910506 None:intergenic 30.0%
ACAAGAGAGAACTAAATGAT+GGG + chr2_2:33910521-33910540 None:intergenic 30.0%
TAAATAACAAATGGGGAGTT+AGG - chr2_2:33910618-33910637 Msa0248980:CDS 30.0%
AAATAACAAATGGGGAGTTA+GGG - chr2_2:33910619-33910638 Msa0248980:CDS 30.0%
AATAGAAAACAAGTCTCACA+CGG + chr2_2:33910758-33910777 None:intergenic 30.0%
GATTCTAATGGAACTAGATA+AGG + chr2_2:33910880-33910899 None:intergenic 30.0%
TGATTACACCACAAGAAATT+TGG - chr2_2:33910950-33910969 Msa0248980:CDS 30.0%
! AATCCATTAACTTGATCCAA+AGG + chr2_2:33911029-33911048 None:intergenic 30.0%
AATTGAATCAATAGGAGTCA+TGG - chr2_2:33911114-33911133 Msa0248980:CDS 30.0%
ATAATCTGGAAACAACTTCT+GGG + chr2_2:33911337-33911356 None:intergenic 30.0%
AATAATCTGGAAACAACTTC+TGG + chr2_2:33911338-33911357 None:intergenic 30.0%
! AAGAGCACATTGAAATAATC+TGG + chr2_2:33911351-33911370 None:intergenic 30.0%
AAGGGGATATATGATTAGAT+TGG - chr2_2:33911404-33911423 Msa0248980:CDS 30.0%
! TATGATTAGATTGGTAGTTG+AGG - chr2_2:33911413-33911432 Msa0248980:CDS 30.0%
AGTTAATAAATGGAGTGGTA+TGG - chr2_2:33911442-33911461 Msa0248980:CDS 30.0%
AATTGAGGGACTAAATTGAT+TGG + chr2_2:33911556-33911575 None:intergenic 30.0%
AATGTTCACTAAAGAGATTG+GGG + chr2_2:33911741-33911760 None:intergenic 30.0%
GAATGTTCACTAAAGAGATT+GGG + chr2_2:33911742-33911761 None:intergenic 30.0%
TGAATGTTCACTAAAGAGAT+TGG + chr2_2:33911743-33911762 None:intergenic 30.0%
GTCCTTAAAATTGTTAGGAT+CGG + chr2_2:33911933-33911952 None:intergenic 30.0%
!!! AAATGCTGATTTGCTCATTT+TGG - chr2_2:33911955-33911974 Msa0248980:five_prime_UTR 30.0%
GATGTCACACAAATATTCAT+TGG + chr2_2:33911990-33912009 None:intergenic 30.0%
! ATGATATTAGCTTATTCCGT+TGG - chr2_2:33912044-33912063 Msa0248980:five_prime_UTR 30.0%
! TCTTTGTTATGTTATTCTGC+AGG - chr2_2:33912093-33912112 Msa0248980:five_prime_UTR 30.0%
!!! AGGTTTGTTTTGCTATTTTC+TGG - chr2_2:33912113-33912132 Msa0248980:five_prime_UTR 30.0%
!!! GGTTTGTTTTGCTATTTTCT+GGG - chr2_2:33912114-33912133 Msa0248980:five_prime_UTR 30.0%
ATCCTAAACCTAACCATAAA+GGG + chr2_2:33912328-33912347 None:intergenic 30.0%
AATCCTAAACCTAACCATAA+AGG + chr2_2:33912329-33912348 None:intergenic 30.0%
! TGAGTTTATACAGAAAGCAT+TGG - chr2_2:33912353-33912372 Msa0248980:five_prime_UTR 30.0%
!! GAGTTTATACAGAAAGCATT+GGG - chr2_2:33912354-33912373 Msa0248980:five_prime_UTR 30.0%
ACTCAACAAGTAGTTTACAA+TGG + chr2_2:33912425-33912444 None:intergenic 30.0%
TGAGAGAAAGGTTCAAACTT+TGG + chr2_2:33906254-33906273 None:intergenic 35.0%
!! AAATCCTGATTTGGAGAGAT+GGG - chr2_2:33906415-33906434 Msa0248980:three_prime_UTR 35.0%
! ATGGGTATGTTTCTGTTCAA+TGG - chr2_2:33906433-33906452 Msa0248980:three_prime_UTR 35.0%
! GCTACTGTTCTATATCGTTT+TGG - chr2_2:33906480-33906499 Msa0248980:intron 35.0%
!! GGTTGTTTTGTGTATGCAAA+AGG - chr2_2:33906597-33906616 Msa0248980:intron 35.0%
! AACTGTGAGTGTTGTGAATT+AGG - chr2_2:33906677-33906696 Msa0248980:intron 35.0%
!! TGATTGTTGGGTTGAAAATG+GGG - chr2_2:33906747-33906766 Msa0248980:intron 35.0%
GGAGAAACAAGTGAAGAAAA+TGG - chr2_2:33906788-33906807 Msa0248980:intron 35.0%
AATGGGAATCATAGTAACGA+CGG - chr2_2:33906806-33906825 Msa0248980:intron 35.0%
GACACATCTATATGATCTCT+CGG + chr2_2:33906977-33906996 None:intergenic 35.0%
ATATAGATGTGTCGTATGTG+CGG - chr2_2:33906984-33907003 Msa0248980:intron 35.0%
GGCGATTAATGAATGCAATT+TGG - chr2_2:33907057-33907076 Msa0248980:intron 35.0%
TCCAACGCCATGATATTATT+CGG + chr2_2:33907199-33907218 None:intergenic 35.0%
! AAAAGTGCACTTGAAGATAG+AGG - chr2_2:33907235-33907254 Msa0248980:intron 35.0%
AAAGTGCACTTGAAGATAGA+GGG - chr2_2:33907236-33907255 Msa0248980:intron 35.0%
! TTTTGATGTGCCTTCAGAAA+AGG - chr2_2:33907312-33907331 Msa0248980:intron 35.0%
GAAACTAGAAGAGAAGAAAG+AGG - chr2_2:33907444-33907463 Msa0248980:intron 35.0%
TAAGCAGAAAGAGGATGTTA+AGG - chr2_2:33907561-33907580 Msa0248980:intron 35.0%
TGAAAAAGGCTGCAATTAAC+CGG + chr2_2:33907682-33907701 None:intergenic 35.0%
TGACTTGATCACAATCACTT+CGG - chr2_2:33907774-33907793 Msa0248980:intron 35.0%
TTCGGATGAAGAATTGAAGT+GGG - chr2_2:33907792-33907811 Msa0248980:intron 35.0%
AGACGAAGTTTCTCATAGAA+CGG + chr2_2:33907880-33907899 None:intergenic 35.0%
TGATGTGGAAAAGGTTGAAA+TGG - chr2_2:33907903-33907922 Msa0248980:intron 35.0%
ATGGATAATGCTCCTAAGAA+CGG - chr2_2:33907922-33907941 Msa0248980:intron 35.0%
CAACTGTTCAAAAATCACGT+TGG - chr2_2:33908012-33908031 Msa0248980:intron 35.0%
! AGCTCTAGCATTGTTCAATT+GGG - chr2_2:33908170-33908189 Msa0248980:intron 35.0%
CAGAAAGAATATGCAAAAGC+TGG - chr2_2:33908297-33908316 Msa0248980:intron 35.0%
TCATCTTTACAACAATGCTG+AGG - chr2_2:33908473-33908492 Msa0248980:intron 35.0%
TGGAAAAAGGAATGCTGATA+TGG - chr2_2:33908502-33908521 Msa0248980:intron 35.0%
GGAAAAAGGAATGCTGATAT+GGG - chr2_2:33908503-33908522 Msa0248980:intron 35.0%
GTCACAGATAAATCTCTTGT+GGG - chr2_2:33908632-33908651 Msa0248980:intron 35.0%
TCACAGATAAATCTCTTGTG+GGG - chr2_2:33908633-33908652 Msa0248980:intron 35.0%
TTCCAATGATTCATGCCATA+CGG + chr2_2:33908706-33908725 None:intergenic 35.0%
ATTGAGAAGTTTGAACATGC+AGG - chr2_2:33908732-33908751 Msa0248980:intron 35.0%
AACATTACAGCTACATCTGT+TGG + chr2_2:33908765-33908784 None:intergenic 35.0%
TCAAATAACACTGCTGTAGA+TGG - chr2_2:33908798-33908817 Msa0248980:intron 35.0%
TTGATGAAATAGTACAGGCA+TGG - chr2_2:33908912-33908931 Msa0248980:intron 35.0%
GAAGCTAAAAAGTTGCAGAA+AGG - chr2_2:33908947-33908966 Msa0248980:intron 35.0%
GATACTCTTCTTCTGAACAA+GGG + chr2_2:33908995-33909014 None:intergenic 35.0%
! AGCATTAGTCTACGTGATTA+TGG - chr2_2:33909387-33909406 Msa0248980:intron 35.0%
TCTACGTGATTATGGAAAGT+TGG - chr2_2:33909395-33909414 Msa0248980:intron 35.0%
! TTTGAGACACTTGTTTGAGT+TGG - chr2_2:33909933-33909952 Msa0248980:CDS 35.0%
AAACAGTTACTGTGTCAAGT+AGG - chr2_2:33910017-33910036 Msa0248980:CDS 35.0%
GTAATTTGAGAATTTGAGGG+GGG - chr2_2:33910045-33910064 Msa0248980:CDS 35.0%
!!! GGAACCATGGTTTTAAATTG+AGG - chr2_2:33910121-33910140 Msa0248980:CDS 35.0%
! CAGACCTCAATTTAAAACCA+TGG + chr2_2:33910128-33910147 None:intergenic 35.0%
!! GACTTTAAAATCCGCAATTG+CGG + chr2_2:33910154-33910173 None:intergenic 35.0%
TGCAGTAAAATGAGGAAATG+CGG + chr2_2:33910207-33910226 None:intergenic 35.0%
TGTGGTTACACTATACACTA+TGG + chr2_2:33910240-33910259 None:intergenic 35.0%
!! GGATATTTTGGAAAAGGCAT+GGG + chr2_2:33910427-33910446 None:intergenic 35.0%
!! GGTAAGGGATATTTTGGAAA+AGG + chr2_2:33910433-33910452 None:intergenic 35.0%
CACAAGAGAGAACTAAATGA+TGG + chr2_2:33910522-33910541 None:intergenic 35.0%
!!! GAGACACTTTTGATTTCAGA+CGG - chr2_2:33910641-33910660 Msa0248980:CDS 35.0%
! TTTTTCTCTTTCTGACAAGC+AGG + chr2_2:33910684-33910703 None:intergenic 35.0%
AAAAAGAGGTAGGAGAATCT+AGG - chr2_2:33910718-33910737 Msa0248980:CDS 35.0%
ATAGAAAACAAGTCTCACAC+GGG + chr2_2:33910757-33910776 None:intergenic 35.0%
CACTACTAAGTTATAGAGTG+AGG - chr2_2:33910820-33910839 Msa0248980:CDS 35.0%
TTATAGAGTGAGGTTTGACT+TGG - chr2_2:33910830-33910849 Msa0248980:CDS 35.0%
TTCCATTAGAATCCCTTTAG+AGG - chr2_2:33910887-33910906 Msa0248980:CDS 35.0%
AACAGGAAAACACCTCTAAA+GGG + chr2_2:33910902-33910921 None:intergenic 35.0%
CTTCCTTTGGATCAAGTTAA+TGG - chr2_2:33911023-33911042 Msa0248980:CDS 35.0%
!! TTAATGGATTTCATTGCCCT+AGG - chr2_2:33911039-33911058 Msa0248980:CDS 35.0%
CATGCACAATAATTGACCTA+GGG + chr2_2:33911058-33911077 None:intergenic 35.0%
ACATGCACAATAATTGACCT+AGG + chr2_2:33911059-33911078 None:intergenic 35.0%
GCACACTGAATTAATGGAAA+TGG - chr2_2:33911138-33911157 Msa0248980:CDS 35.0%
GAGGTGAGAGAGTTAATAAA+TGG - chr2_2:33911432-33911451 Msa0248980:CDS 35.0%
GAGAGAGTTAATAAATGGAG+TGG - chr2_2:33911437-33911456 Msa0248980:CDS 35.0%
AATAAATGGAGTGGTATGGA+AGG - chr2_2:33911446-33911465 Msa0248980:CDS 35.0%
CATATGCAGGTATTATGCAA+GGG + chr2_2:33911487-33911506 None:intergenic 35.0%
TCATATGCAGGTATTATGCA+AGG + chr2_2:33911488-33911507 None:intergenic 35.0%
AAAAAAAAAAAGGGGAAGCC+CGG - chr2_2:33911597-33911616 Msa0248980:CDS 35.0%
TACACAACCCAAAAAATGGT+GGG + chr2_2:33911662-33911681 None:intergenic 35.0%
ATGTTCACTAAAGAGATTGG+GGG + chr2_2:33911740-33911759 None:intergenic 35.0%
ACTAATCTTGATACACCAAG+AGG + chr2_2:33911803-33911822 None:intergenic 35.0%
! ATTGCTAACTTGCAGATTTG+AGG - chr2_2:33911896-33911915 Msa0248980:five_prime_UTR 35.0%
! TTGCTAACTTGCAGATTTGA+GGG - chr2_2:33911897-33911916 Msa0248980:five_prime_UTR 35.0%
! GACCGATCCTAACAATTTTA+AGG - chr2_2:33911928-33911947 Msa0248980:five_prime_UTR 35.0%
TATTTGCATTGCGATTGCTT+AGG - chr2_2:33912200-33912219 Msa0248980:five_prime_UTR 35.0%
TAAACCTAACCATAAAGGGA+AGG + chr2_2:33912324-33912343 None:intergenic 35.0%
TTCCCTTTATGGTTAGGTTT+AGG - chr2_2:33912323-33912342 Msa0248980:five_prime_UTR 35.0%
! TCTGAAACGTGAGAAATGGA+AGG + chr2_2:33906229-33906248 None:intergenic 40.0%
! GGAATCTGAAACGTGAGAAA+TGG + chr2_2:33906233-33906252 None:intergenic 40.0%
GGTGAGAGATTATGAGAGAA+AGG + chr2_2:33906266-33906285 None:intergenic 40.0%
ACAAATCCCAATTCAGAGAG+GGG + chr2_2:33906383-33906402 None:intergenic 40.0%
CACAAATCCCAATTCAGAGA+GGG + chr2_2:33906384-33906403 None:intergenic 40.0%
ACACAAATCCCAATTCAGAG+AGG + chr2_2:33906385-33906404 None:intergenic 40.0%
!! CAAATCCTGATTTGGAGAGA+TGG - chr2_2:33906414-33906433 Msa0248980:three_prime_UTR 40.0%
! TGTGAGTGTTGTGAATTAGG+AGG - chr2_2:33906680-33906699 Msa0248980:intron 40.0%
! GTGAGTGTTGTGAATTAGGA+GGG - chr2_2:33906681-33906700 Msa0248980:intron 40.0%
GGGAAGAAAAAGAAGCAAGT+AGG - chr2_2:33906767-33906786 Msa0248980:intron 40.0%
GCTCAAGAATTGAAGGAAGA+AGG - chr2_2:33906881-33906900 Msa0248980:intron 40.0%
TTTCAAAAGAGGGATCTTCG+AGG - chr2_2:33906914-33906933 Msa0248980:intron 40.0%
TGCATTCATTAATCGCCCTA+GGG + chr2_2:33907054-33907073 None:intergenic 40.0%
TTGCATTCATTAATCGCCCT+AGG + chr2_2:33907055-33907074 None:intergenic 40.0%
GATGGAGCCGAATAATATCA+TGG - chr2_2:33907189-33907208 Msa0248980:intron 40.0%
! TGAGAAAATTGAGTTGCCTC+CGG - chr2_2:33907273-33907292 Msa0248980:intron 40.0%
! TCTGAAGGCACATCAAAAGA+TGG + chr2_2:33907310-33907329 None:intergenic 40.0%
AATTGTAGAGAAGCAAGCTG+AGG - chr2_2:33907393-33907412 Msa0248980:intron 40.0%
ACTAGAAGAGAAACATGCTG+AGG - chr2_2:33907420-33907439 Msa0248980:intron 40.0%
ACTAGAAGAGAAGAAAGAGG+AGG - chr2_2:33907447-33907466 Msa0248980:intron 40.0%
GGACAACATTGCACCAAATA+AGG - chr2_2:33907468-33907487 Msa0248980:intron 40.0%
! TATAAGATGGGCTCAATTGC+CGG - chr2_2:33907660-33907679 Msa0248980:intron 40.0%
ATTTGACAAGAACTGCTCCT+AGG + chr2_2:33907738-33907757 None:intergenic 40.0%
CTTCGGATGAAGAATTGAAG+TGG - chr2_2:33907791-33907810 Msa0248980:intron 40.0%
TCATAGAACGGATCGTGATT+AGG + chr2_2:33907868-33907887 None:intergenic 40.0%
GAAACTTCGTCTGAATGATG+TGG - chr2_2:33907888-33907907 Msa0248980:intron 40.0%
TCGTCTGAATGATGTGGAAA+AGG - chr2_2:33907894-33907913 Msa0248980:intron 40.0%
TGTTAGCTCATCTTGTGTTG+AGG - chr2_2:33907969-33907988 Msa0248980:intron 40.0%
! CAGCTCTAGCATTGTTCAAT+TGG - chr2_2:33908169-33908188 Msa0248980:intron 40.0%
GCTCTAGCATTGTTCAATTG+GGG - chr2_2:33908171-33908190 Msa0248980:intron 40.0%
GGGAAATGTGCATATGTCTA+GGG - chr2_2:33908191-33908210 Msa0248980:intron 40.0%
ACTACTGAGTGCATAATACC+AGG + chr2_2:33908415-33908434 None:intergenic 40.0%
GTAAAGATGAAGAACCTCTG+TGG + chr2_2:33908463-33908482 None:intergenic 40.0%
CAACAATGCTGAGGAGAATA+TGG - chr2_2:33908482-33908501 Msa0248980:intron 40.0%
GCTGAGGAGAATATGGAAAA+AGG - chr2_2:33908489-33908508 Msa0248980:intron 40.0%
TTCAAATAACCCATCCAACC+CGG + chr2_2:33908568-33908587 None:intergenic 40.0%
GGTCACAGATAAATCTCTTG+TGG - chr2_2:33908631-33908650 Msa0248980:intron 40.0%
TCCAATGATTCATGCCATAC+GGG + chr2_2:33908705-33908724 None:intergenic 40.0%
!! CAGCAGTGTTATTTGAACAG+TGG + chr2_2:33908794-33908813 None:intergenic 40.0%
ACACTTCTTCTAACAGGTCT+AGG - chr2_2:33908881-33908900 Msa0248980:intron 40.0%
AGGAGTTTCATCCTTTCGTT+TGG - chr2_2:33908967-33908986 Msa0248980:intron 40.0%
CGATACTCTTCTTCTGAACA+AGG + chr2_2:33908996-33909015 None:intergenic 40.0%
AGCAACTCATACAAGCTCAA+AGG + chr2_2:33909032-33909051 None:intergenic 40.0%
TCATGCACATAAACAAACGC+AGG + chr2_2:33909212-33909231 None:intergenic 40.0%
CTGCTTCAAACCCTCTTAAT+GGG + chr2_2:33909450-33909469 None:intergenic 40.0%
TGTCAGAGTCAGTGTTTCAA+AGG + chr2_2:33909523-33909542 None:intergenic 40.0%
!! TTGAAACACTGACTCTGACA+CGG - chr2_2:33909523-33909542 Msa0248980:three_prime_UTR 40.0%
GTTGTGACTGAAGAGTTCTA+AGG - chr2_2:33909883-33909902 Msa0248980:CDS 40.0%
!! AGAGTTCTAAGGTGTGTCTA+AGG - chr2_2:33909894-33909913 Msa0248980:CDS 40.0%
ATGCGGTCAAAATTGTGGTT+GGG + chr2_2:33910190-33910209 None:intergenic 40.0%
AATGCGGTCAAAATTGTGGT+TGG + chr2_2:33910191-33910210 None:intergenic 40.0%
AGGAAATGCGGTCAAAATTG+TGG + chr2_2:33910195-33910214 None:intergenic 40.0%
GCTCTGCTCTTTACAATTTG+AGG - chr2_2:33910323-33910342 Msa0248980:CDS 40.0%
ATGGGCAAGCATCATGTTTA+AGG + chr2_2:33910409-33910428 None:intergenic 40.0%
!! GGGATATTTTGGAAAAGGCA+TGG + chr2_2:33910428-33910447 None:intergenic 40.0%
! AGAGAACTAAATGATGGGAC+AGG + chr2_2:33910516-33910535 None:intergenic 40.0%
! TTGATTTCAGACGGATTCAG+CGG - chr2_2:33910650-33910669 Msa0248980:CDS 40.0%
! CACCTCTAAAGGGATTCTAA+TGG + chr2_2:33910892-33910911 None:intergenic 40.0%
GAACAGGAAAACACCTCTAA+AGG + chr2_2:33910903-33910922 None:intergenic 40.0%
CAGATCTGCCAAATTTCTTG+TGG + chr2_2:33910961-33910980 None:intergenic 40.0%
CATGGAGCACACTGAATTAA+TGG - chr2_2:33911132-33911151 Msa0248980:CDS 40.0%
CTACACAACCCAAAAAATGG+TGG + chr2_2:33911663-33911682 None:intergenic 40.0%
!!! CACCATTTTTTGGGTTGTGT+AGG - chr2_2:33911661-33911680 Msa0248980:CDS 40.0%
TGCCTACACAACCCAAAAAA+TGG + chr2_2:33911666-33911685 None:intergenic 40.0%
TCTATCTTCCCAACCTGTAA+AGG + chr2_2:33912255-33912274 None:intergenic 40.0%
CTCATATTGCCTTCCCTTTA+TGG - chr2_2:33912312-33912331 Msa0248980:five_prime_UTR 40.0%
ATTGCCTTCCCTTTATGGTT+AGG - chr2_2:33912317-33912336 Msa0248980:five_prime_UTR 40.0%
TTCTTGTCCCCTCTCTGAAT+TGG - chr2_2:33906373-33906392 Msa0248980:three_prime_UTR 45.0%
TCTTGTCCCCTCTCTGAATT+GGG - chr2_2:33906374-33906393 Msa0248980:three_prime_UTR 45.0%
CATACCCATCTCTCCAAATC+AGG + chr2_2:33906422-33906441 None:intergenic 45.0%
TTCCTTCAATTCTTGAGCCG+TGG + chr2_2:33906879-33906898 None:intergenic 45.0%
GTCGTATGTGCGGAGTAATA+TGG - chr2_2:33906994-33907013 Msa0248980:intron 45.0%
GCTGCATGCTATATGCAGAT+GGG - chr2_2:33907016-33907035 Msa0248980:intron 45.0%
TGCTATATGCAGATGGGACT+TGG - chr2_2:33907022-33907041 Msa0248980:intron 45.0%
!! AAGCTTTGTTGAAGAGAGCG+AGG - chr2_2:33907107-33907126 Msa0248980:intron 45.0%
GCCGAATAATATCATGGCGT+TGG - chr2_2:33907195-33907214 Msa0248980:intron 45.0%
GATGGTTCAACATAATCCGG+AGG + chr2_2:33907292-33907311 None:intergenic 45.0%
CATTGCACCAAATAAGGCTG+AGG - chr2_2:33907474-33907493 Msa0248980:intron 45.0%
!! TGATCGTCCTCAGCCTTATT+TGG + chr2_2:33907484-33907503 None:intergenic 45.0%
ATCGAAAAAGAAGGCAGCCA+AGG - chr2_2:33907528-33907547 Msa0248980:intron 45.0%
GCAGAAAGAGGATGTTAAGG+AGG - chr2_2:33907564-33907583 Msa0248980:intron 45.0%
!! GAATTGAAGTGGGCTGAAAC+AGG - chr2_2:33907802-33907821 Msa0248980:intron 45.0%
TTCAGCACACAACCGTTCTT+AGG + chr2_2:33907937-33907956 None:intergenic 45.0%
CGGTTGTGTGCTGAAATCAA+AGG - chr2_2:33907942-33907961 Msa0248980:intron 45.0%
GCTCATCTTGTGTTGAGGAT+TGG - chr2_2:33907974-33907993 Msa0248980:intron 45.0%
TGGGATGAAGCTCTATTCAG+AGG - chr2_2:33908071-33908090 Msa0248980:intron 45.0%
TTCAGAGGCTGTTGAAGAGA+CGG - chr2_2:33908086-33908105 Msa0248980:intron 45.0%
! GTTACAAGTGAAGAAGCGCA+AGG - chr2_2:33908108-33908127 Msa0248980:intron 45.0%
TACCTCCTGCCATGTCAAAT+AGG + chr2_2:33908134-33908153 None:intergenic 45.0%
ATGCTAGAGCTGTCATCTCT+TGG + chr2_2:33908161-33908180 None:intergenic 45.0%
GGGGAAATGTGCATATGTCT+AGG - chr2_2:33908190-33908209 Msa0248980:intron 45.0%
! ATGTGCATATGTCTAGGGCA+AGG - chr2_2:33908196-33908215 Msa0248980:intron 45.0%
TACGAAGGCTTTCTTGCTCT+TGG - chr2_2:33908360-33908379 Msa0248980:intron 45.0%
TCGAACAAGCGAAACTTTCC+TGG - chr2_2:33908394-33908413 Msa0248980:intron 45.0%
AGATGAAGAACCTCTGTGGA+GGG + chr2_2:33908459-33908478 None:intergenic 45.0%
AAGATGAAGAACCTCTGTGG+AGG + chr2_2:33908460-33908479 None:intergenic 45.0%
ATCAGATGAAACTGCTGAGC+TGG - chr2_2:33908596-33908615 Msa0248980:intron 45.0%
TCAAATTAGGGCTACCCGTA+TGG - chr2_2:33908688-33908707 Msa0248980:intron 45.0%
ACCCGTATGGCATGAATCAT+TGG - chr2_2:33908701-33908720 Msa0248980:intron 45.0%
GAACAAGGGTTCCAAACGAA+AGG + chr2_2:33908981-33909000 None:intergenic 45.0%
CTCATACAAGCTCAAAGGCA+TGG + chr2_2:33909027-33909046 None:intergenic 45.0%
CCTGCTTCAAACCCTCTTAA+TGG + chr2_2:33909451-33909470 None:intergenic 45.0%
! CCATTAAGAGGGTTTGAAGC+AGG - chr2_2:33909448-33909467 Msa0248980:intron 45.0%
! TAAGAGGGTTTGAAGCAGGA+AGG - chr2_2:33909452-33909471 Msa0248980:intron 45.0%
! AAGAGGGTTTGAAGCAGGAA+GGG - chr2_2:33909453-33909472 Msa0248980:intron 45.0%
TGACATTAGCATTGTCGGCA+TGG + chr2_2:33909573-33909592 None:intergenic 45.0%
! GTTGGTAGACACGTGTCATA+CGG - chr2_2:33909951-33909970 Msa0248980:CDS 45.0%
TTGGTAGACACGTGTCATAC+GGG - chr2_2:33909952-33909971 Msa0248980:CDS 45.0%
TTGTGGTTGGGACACCAATA+TGG + chr2_2:33910178-33910197 None:intergenic 45.0%
! GCAAGCATCATGTTTAAGGC+AGG + chr2_2:33910405-33910424 None:intergenic 45.0%
! GTGGAGGGTAAGGGATATTT+TGG + chr2_2:33910439-33910458 None:intergenic 45.0%
AGTTGAAAGGGCAAAGTGGA+GGG + chr2_2:33910454-33910473 None:intergenic 45.0%
AAGTTGAAAGGGCAAAGTGG+AGG + chr2_2:33910455-33910474 None:intergenic 45.0%
AGGAAGTTGAAAGGGCAAAG+TGG + chr2_2:33910458-33910477 None:intergenic 45.0%
! GAACTAAATGATGGGACAGG+TGG + chr2_2:33910513-33910532 None:intergenic 45.0%
ACGGTTGTTAGGAGCTACAA+GGG + chr2_2:33910566-33910585 None:intergenic 45.0%
TTGTAGCTCCTAACAACCGT+GGG - chr2_2:33910566-33910585 Msa0248980:CDS 45.0%
ATGTTAGACCCACGGTTGTT+AGG + chr2_2:33910577-33910596 None:intergenic 45.0%
!!! AAGGGGTCCCACCATTTTTT+GGG - chr2_2:33911652-33911671 Msa0248980:CDS 45.0%
TGTTGTCACGTGACTGAACA+GGG + chr2_2:33911695-33911714 None:intergenic 45.0%
TTGTTGTCACGTGACTGAAC+AGG + chr2_2:33911696-33911715 None:intergenic 45.0%
CTTAGGTGTTCCAGGAATGT+AGG - chr2_2:33912217-33912236 Msa0248980:five_prime_UTR 45.0%
GAGTTTGCGAGTTCCTTTAC+AGG - chr2_2:33912239-33912258 Msa0248980:five_prime_UTR 45.0%
TTGCGAGTTCCTTTACAGGT+TGG - chr2_2:33912243-33912262 Msa0248980:five_prime_UTR 45.0%
TGCGAGTTCCTTTACAGGTT+GGG - chr2_2:33912244-33912263 Msa0248980:five_prime_UTR 45.0%
!! AAAAAAAAAAAAAAAAAAAG+AGG - chr2_2:33910704-33910723 Msa0248980:CDS 5.0%
TGCCACGGCTCAAGAATTGA+AGG - chr2_2:33906874-33906893 Msa0248980:intron 50.0%
ATCTTCGAGGAGCGATGGTA+AGG - chr2_2:33906927-33906946 Msa0248980:intron 50.0%
GGCTGCATGCTATATGCAGA+TGG - chr2_2:33907015-33907034 Msa0248980:intron 50.0%
! GAAGAGAGCGAGGTGTTATG+AGG - chr2_2:33907117-33907136 Msa0248980:intron 50.0%
! GGCGTTGGAGATCTCAGATA+AGG - chr2_2:33907210-33907229 Msa0248980:intron 50.0%
CAAGAACTGCTCCTAGGCTT+GGG + chr2_2:33907732-33907751 None:intergenic 50.0%
ACAAGAACTGCTCCTAGGCT+TGG + chr2_2:33907733-33907752 None:intergenic 50.0%
TGGGCTGAAACAGGATCACA+GGG - chr2_2:33907811-33907830 Msa0248980:intron 50.0%
AGCGCAAGGCCTATTTGACA+TGG - chr2_2:33908122-33908141 Msa0248980:intron 50.0%
CAAGGCCTATTTGACATGGC+AGG - chr2_2:33908126-33908145 Msa0248980:intron 50.0%
TTCTTGCTCTTGGTCAGCAG+CGG - chr2_2:33908370-33908389 Msa0248980:intron 50.0%
CTCAGTGAAACCTCCACTAC+CGG - chr2_2:33908546-33908565 Msa0248980:intron 50.0%
TCAGTGAAACCTCCACTACC+GGG - chr2_2:33908547-33908566 Msa0248980:intron 50.0%
AGATGAAACTGCTGAGCTGG+CGG - chr2_2:33908599-33908618 Msa0248980:intron 50.0%
CATAGAGCCAGCACTCACAT+AGG - chr2_2:33909078-33909097 Msa0248980:intron 50.0%
GAAGCAACCTATGTGAGTGC+TGG + chr2_2:33909088-33909107 None:intergenic 50.0%
! AGAGGGTTTGAAGCAGGAAG+GGG - chr2_2:33909454-33909473 Msa0248980:intron 50.0%
! ACTGACTCTGACACGGATGT+CGG - chr2_2:33909530-33909549 Msa0248980:three_prime_UTR 50.0%
TTGAGGGGGGCAAGAAAAAC+TGG - chr2_2:33910058-33910077 Msa0248980:CDS 50.0%
TGAGGGGGGCAAGAAAAACT+GGG - chr2_2:33910059-33910078 Msa0248980:CDS 50.0%
AAGGGCAAAGTGGAGGGTAA+GGG + chr2_2:33910448-33910467 None:intergenic 50.0%
AAAGGGCAAAGTGGAGGGTA+AGG + chr2_2:33910449-33910468 None:intergenic 50.0%
GACAGGTGGCAGTAGACTAT+TGG + chr2_2:33910499-33910518 None:intergenic 50.0%
CGGTTGTTAGGAGCTACAAG+GGG + chr2_2:33910565-33910584 None:intergenic 50.0%
CACGGTTGTTAGGAGCTACA+AGG + chr2_2:33910567-33910586 None:intergenic 50.0%
CTTGTAGCTCCTAACAACCG+TGG - chr2_2:33910565-33910584 Msa0248980:CDS 50.0%
TTCCCAGACCTTGCGTATGT+GGG + chr2_2:33911634-33911653 None:intergenic 50.0%
ACATACGCAAGGTCTGGGAA+GGG - chr2_2:33911634-33911653 Msa0248980:CDS 50.0%
!!! GAAGGGGTCCCACCATTTTT+TGG - chr2_2:33911651-33911670 Msa0248980:CDS 50.0%
TCACGTGACTGAACAGGGTA+AGG + chr2_2:33911690-33911709 None:intergenic 50.0%
ACAACTTTACCGCTACGCCA+AGG - chr2_2:33911712-33911731 Msa0248980:CDS 50.0%
TAAAGAGATTGGGGGAGCCT+TGG + chr2_2:33911732-33911751 None:intergenic 50.0%
TGCGATTGCTTAGGTGTTCC+AGG - chr2_2:33912209-33912228 Msa0248980:five_prime_UTR 50.0%
CTCGCAAACTCCTACATTCC+TGG + chr2_2:33912230-33912249 None:intergenic 50.0%
GGTTGGGAAGATAGAGATGC+AGG - chr2_2:33912260-33912279 Msa0248980:five_prime_UTR 50.0%
!! TGGGACTTGGTGAGTACCCT+AGG - chr2_2:33907035-33907054 Msa0248980:intron 55.0%
!! GGGACTTGGTGAGTACCCTA+GGG - chr2_2:33907036-33907055 Msa0248980:intron 55.0%
TGTGACAGGTTCCCAAGCCT+AGG - chr2_2:33907718-33907737 Msa0248980:intron 55.0%
! GTGGGCTGAAACAGGATCAC+AGG - chr2_2:33907810-33907829 Msa0248980:intron 55.0%
GGCCTATTTGACATGGCAGG+AGG - chr2_2:33908129-33908148 Msa0248980:intron 55.0%
TGAAACCTCCACTACCGGGT+TGG - chr2_2:33908551-33908570 Msa0248980:intron 55.0%
TAACCCATCCAACCCGGTAG+TGG + chr2_2:33908562-33908581 None:intergenic 55.0%
GACACGTGTCATACGGGTGT+CGG - chr2_2:33909958-33909977 Msa0248980:CDS 55.0%
!! TGTCATACGGGTGTCGGACA+CGG - chr2_2:33909964-33909983 Msa0248980:CDS 55.0%
! TATGTGGGAGCCTTGTGCAC+CGG + chr2_2:33911619-33911638 None:intergenic 55.0%
ACAAGGCTCCCACATACGCA+AGG - chr2_2:33911623-33911642 Msa0248980:CDS 55.0%
CTCCCACATACGCAAGGTCT+GGG - chr2_2:33911629-33911648 Msa0248980:CDS 55.0%
CTTCCCAGACCTTGCGTATG+TGG + chr2_2:33911635-33911654 None:intergenic 55.0%
CACATACGCAAGGTCTGGGA+AGG - chr2_2:33911633-33911652 Msa0248980:CDS 55.0%
CATACGCAAGGTCTGGGAAG+GGG - chr2_2:33911635-33911654 Msa0248980:CDS 55.0%
GAGGGATCTTCGAGGAGCGA+TGG - chr2_2:33906922-33906941 Msa0248980:intron 60.0%
ACCTCTGTGGAGGGCCATGT+CGG + chr2_2:33908450-33908469 None:intergenic 60.0%
! ACCTCCACTACCGGGTTGGA+TGG - chr2_2:33908555-33908574 Msa0248980:intron 60.0%
! CCTCCACTACCGGGTTGGAT+GGG - chr2_2:33908556-33908575 Msa0248980:intron 60.0%
CTGAGCTGGCGGCAAACATG+AGG - chr2_2:33908610-33908629 Msa0248980:intron 60.0%
! GGGTTTGAAGCAGGAAGGGG+AGG - chr2_2:33909457-33909476 Msa0248980:intron 60.0%
GAGGTCTGCAGCCGCAATTG+CGG - chr2_2:33910140-33910159 Msa0248980:CDS 60.0%
! ATGTGGGAGCCTTGTGCACC+GGG + chr2_2:33911618-33911637 None:intergenic 60.0%
GCTCCCACATACGCAAGGTC+TGG - chr2_2:33911628-33911647 Msa0248980:CDS 60.0%
ACCGACATGGCCCTCCACAG+AGG - chr2_2:33908446-33908465 Msa0248980:intron 65.0%
! CCCATCCAACCCGGTAGTGG+AGG + chr2_2:33908559-33908578 None:intergenic 65.0%
!! GGGTGTCGGACACGGAGACA+TGG - chr2_2:33909972-33909991 Msa0248980:CDS 65.0%
AAGGGGAAGCCCGGTGCACA+AGG - chr2_2:33911606-33911625 Msa0248980:CDS 65.0%
TTGGGGGAGCCTTGGCGTAG+CGG + chr2_2:33911724-33911743 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 33906086 33912521 33906086 ID=Msa0248980;Name=Msa0248980
chr2_2 mRNA 33906086 33912521 33906086 ID=Msa0248980-mRNA-1;Parent=Msa0248980;Name=Msa0248980-mRNA-1;_AED=0.00;_eAED=0.00;_QI=678|1|1|1|0.5|0.33|3|498|734
chr2_2 exon 33906086 33906492 33906086 ID=Msa0248980-mRNA-1:exon:11356;Parent=Msa0248980-mRNA-1
chr2_2 exon 33909471 33909710 33909471 ID=Msa0248980-mRNA-1:exon:11355;Parent=Msa0248980-mRNA-1
chr2_2 exon 33909788 33912521 33909788 ID=Msa0248980-mRNA-1:exon:11354;Parent=Msa0248980-mRNA-1
chr2_2 five_prime_UTR 33911844 33912521 33911844 ID=Msa0248980-mRNA-1:five_prime_utr;Parent=Msa0248980-mRNA-1
chr2_2 CDS 33909788 33911843 33909788 ID=Msa0248980-mRNA-1:cds;Parent=Msa0248980-mRNA-1
chr2_2 CDS 33909562 33909710 33909562 ID=Msa0248980-mRNA-1:cds;Parent=Msa0248980-mRNA-1
chr2_2 three_prime_UTR 33909471 33909561 33909471 ID=Msa0248980-mRNA-1:three_prime_utr;Parent=Msa0248980-mRNA-1
chr2_2 three_prime_UTR 33906086 33906492 33906086 ID=Msa0248980-mRNA-1:three_prime_utr;Parent=Msa0248980-mRNA-1
Gene Sequence

>Msa0248980

ATGGGGAAGAAAAAGAAGCAAGTAGGAGAAACAAGTGAAGAAAATGGGAATCATAGTAACGACGGTGATAAAAGTCCGAATGCGTATGATAATGATACTTTGTTGTTTATTGCCACGGCTCAAGAATTGAAGGAAGAAGGTAATAAGATGTTTCAAAAGAGGGATCTTCGAGGAGCGATGGTAAGGTATGAGAAAGCGCTCAAATTGCTTCCGAGAGATCATATAGATGTGTCGTATGTGCGGAGTAATATGGCTGCATGCTATATGCAGATGGGACTTGGTGAGTACCCTAGGGCGATTAATGAATGCAATTTGGCTCTTGAAGTTACTCCTAAATACGGTAAAGCTTTGTTGAAGAGAGCGAGGTGTTATGAGGCTTTGAATAGATTGGATTTAGCATTGAGAGATGTTAGTACTGTTTTGAAGATGGAGCCGAATAATATCATGGCGTTGGAGATCTCAGATAAGGTGAAAAGTGCACTTGAAGATAGAGGGTTAAGAGTAAATGATGAGAAAATTGAGTTGCCTCCGGATTATGTTGAACCATCTTTTGATGTGCCTTCAGAAAAGGCAAAAGAAAAGAAACAGAAGAAAAAGAGCAAAAAAGAGAAGGTGAAAGCTTCCGATGAAATTGTAGAGAAGCAAGCTGAGGAGAAACTAGAAGAGAAACATGCTGAGGAGAAACTAGAAGAGAAGAAAGAGGAGGACAACATTGCACCAAATAAGGCTGAGGACGATCATCTCAAAGAGAAAAAGCGTAATAAATCGAAAAAGAAGGCAGCCAAGGAAAAAATTGATAAGCAGAAAGAGGATGTTAAGGAGGTCAATGAAGAAAAAAGTAATGGTAGAAGCGTAGATGTACCTAAGAAAACAGCAAAACTTGTTTTTGGTGATGATATAAGATGGGCTCAATTGCCGGTTAATTGCAGCCTTTTTCAGCTAAGAGAAGTTATTTGTGACAGGTTCCCAAGCCTAGGAGCAGTTCTTGTCAAATATAGAGATCAAGAAGGTGACTTGATCACAATCACTTCGGATGAAGAATTGAAGTGGGCTGAAACAGGATCACAGGGTTCTATCCGACTGTATATAGTAGAAGCTAATCCTAATCACGATCCGTTCTATGAGAAACTTCGTCTGAATGATGTGGAAAAGGTTGAAATGGATAATGCTCCTAAGAACGGTTGTGTGCTGAAATCAAAGGAAATTGTTAGCTCATCTTGTGTTGAGGATTGGATAATTCAGTTCGCACAACTGTTCAAAAATCACGTTGGGTTTGAATCCGACAGATACTTAGATTTTCATGAACTTGGGATGAAGCTCTATTCAGAGGCTGTTGAAGAGACGGTTACAAGTGAAGAAGCGCAAGGCCTATTTGACATGGCAGGAGGTAAGTTCCAAGAGATGACAGCTCTAGCATTGTTCAATTGGGGAAATGTGCATATGTCTAGGGCAAGGAAGAAAGTGTATTTAACCGAAGAAGATTCTTCTAAAGAACATATGTATGAGCAAATTAAAAGTTCGTATGAATGGGCGCAGAAAGAATATGCAAAAGCTGGAGAAAAATTTGAAGCAGCCATTAAAATTAAGTCAGATTTTTACGAAGGCTTTCTTGCTCTTGGTCAGCAGCGGTTCGAACAAGCGAAACTTTCCTGGTATTATGCACTCAGTAGTAATATAGATTTACCGACATGGCCCTCCACAGAGGTTCTTCATCTTTACAACAATGCTGAGGAGAATATGGAAAAAGGAATGCTGATATGGGAAGAATCACAAGAGCAGCAGCTCAGTGAAACCTCCACTACCGGGTTGGATGGGTTATTTGAAAATATGTCATCAGATGAAACTGCTGAGCTGGCGGCAAACATGAGGTCACAGATAAATCTCTTGTGGGGTACTATGCTGTATGAACGCTCACTTGTCGAATTCAAATTAGGGCTACCCGTATGGCATGAATCATTGGAAGCTGCAATTGAGAAGTTTGAACATGCAGGAGCTTCTCCAACAGATGTAGCTGTAATGTTGAAAAACCACTGTTCAAATAACACTGCTGTAGATGGTCTAGGTTTCAAAATTGATGAAATAGTACAGGCATGGAATGAGATGTATGAAGCTAAAAAGTTGCAGAAAGGAGTTTCATCCTTTCGTTTGGAACCCTTGTTCAGAAGAAGAGTATCGAAGATTTACCATGCCTTTGAGCTTGTATGA
Protein sequence

>Msa0248980

MGKKKKQVGETSEENGNHSNDGDKSPNAYDNDTLLFIATAQELKEEGNKMFQKRDLRGAMVRYEKALKLLPRDHIDVSYVRSNMAACYMQMGLGEYPRAINECNLALEVTPKYGKALLKRARCYEALNRLDLALRDVSTVLKMEPNNIMALEISDKVKSALEDRGLRVNDEKIELPPDYVEPSFDVPSEKAKEKKQKKKSKKEKVKASDEIVEKQAEEKLEEKHAEEKLEEKKEEDNIAPNKAEDDHLKEKKRNKSKKKAAKEKIDKQKEDVKEVNEEKSNGRSVDVPKKTAKLVFGDDIRWAQLPVNCSLFQLREVICDRFPSLGAVLVKYRDQEGDLITITSDEELKWAETGSQGSIRLYIVEANPNHDPFYEKLRLNDVEKVEMDNAPKNGCVLKSKEIVSSSCVEDWIIQFAQLFKNHVGFESDRYLDFHELGMKLYSEAVEETVTSEEAQGLFDMAGGKFQEMTALALFNWGNVHMSRARKKVYLTEEDSSKEHMYEQIKSSYEWAQKEYAKAGEKFEAAIKIKSDFYEGFLALGQQRFEQAKLSWYYALSSNIDLPTWPSTEVLHLYNNAEENMEKGMLIWEESQEQQLSETSTTGLDGLFENMSSDETAELAANMRSQINLLWGTMLYERSLVEFKLGLPVWHESLEAAIEKFEHAGASPTDVAVMLKNHCSNNTAVDGLGFKIDEIVQAWNEMYEAKKLQKGVSSFRLEPLFRRRVSKIYHAFELV*