AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1172590


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1172590 MtrunA17_Chr2g0307341 89.271 494 51 2 65 556 27 520 0.0 832
Msa1172590 MtrunA17_Chr5g0422391 36.254 331 189 4 94 405 126 453 3.86e-41 159
Msa1172590 MtrunA17_Chr1g0198861 31.214 346 199 6 94 405 127 467 2.16e-32 133
Msa1172590 MtrunA17_Chr2g0330791 23.098 368 222 13 77 405 113 458 1.16e-14 77.0
Msa1172590 MtrunA17_Chr8g0340991 22.630 327 233 5 99 405 144 470 2.02e-14 76.3
Msa1172590 MtrunA17_Chr1g0151531 40.426 94 51 1 232 320 207 300 1.87e-11 67.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1172590 AT3G25690.1 30.617 454 264 9 72 486 115 556 1.64e-41 161
Msa1172590 AT3G25690.2 30.617 454 264 9 72 486 115 556 1.64e-41 161
Msa1172590 AT3G25690.6 30.617 454 264 9 72 486 115 556 1.64e-41 161
Msa1172590 AT3G25690.4 30.617 454 264 9 72 486 115 556 1.64e-41 161
Msa1172590 AT3G25690.5 30.617 454 264 9 72 486 117 558 1.68e-41 161
Msa1172590 AT3G25690.3 29.973 367 214 8 159 486 53 415 1.13e-30 128
Msa1172590 AT1G52080.2 27.157 313 213 6 88 393 133 437 6.02e-16 81.6
Msa1172590 AT1G52080.1 27.157 313 213 6 88 393 133 437 6.02e-16 81.6

Find 72 sgRNAs with CRISPR-Local

Find 147 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACTTATTTCTTCTTGTATC+TGG 0.168939 8_1:-2697813 None:intergenic
AATTGAAGGTTGTGAAAATA+TGG 0.214823 8_1:+2696567 Msa1172590:CDS
CAATTCTTTGCCTGAAATCT+TGG 0.241386 8_1:-2698007 None:intergenic
AGATAGAGCATTACAAGTTT+TGG 0.250398 8_1:+2697002 Msa1172590:CDS
CAAGACTGCACCAAGATTTC+AGG 0.256053 8_1:+2697997 Msa1172590:CDS
TGATCCTGAAATATGCTAAA+AGG 0.287094 8_1:-2698701 None:intergenic
GGTTTCTCTAGATTCATAAA+TGG 0.289507 8_1:-2698345 None:intergenic
ATTTGCTCATTTCATCATAT+TGG 0.313570 8_1:-2698530 None:intergenic
TTTCAATTTATTAAGCAAAC+TGG 0.324262 8_1:-2698175 None:intergenic
AGCATATGAAAAGCCATCTT+TGG 0.325337 8_1:-2697921 None:intergenic
GAACTAATTCACTTGTTTGC+TGG 0.328676 8_1:+2695945 Msa1172590:CDS
ATTCAATAAGTTTCCTTTCA+AGG 0.329852 8_1:-2696654 None:intergenic
AAATTGGTTATTCAGATGAT+AGG 0.356532 8_1:+2698628 Msa1172590:CDS
GAGAAACAAAGAGCTTGAAT+TGG 0.372240 8_1:+2697035 Msa1172590:CDS
TTCCCAACTGAAAATGCAAT+TGG 0.384279 8_1:+2696708 Msa1172590:CDS
GATTCCTCTTCAGAGAATAA+AGG 0.398628 8_1:+2698588 Msa1172590:CDS
GAGAGTGTCTTTCAGTGATT+CGG 0.399568 8_1:+2698383 Msa1172590:CDS
ATTGAATTGCCACAAATTGA+AGG 0.402982 8_1:+2696553 Msa1172590:CDS
AGCAATAGCAAGGATCAAAT+TGG 0.431409 8_1:+2698612 Msa1172590:CDS
TGCTTAATAAATTGAAAAGA+TGG 0.437093 8_1:+2698181 Msa1172590:CDS
GACACTCTCTTCAATCTTGT+CGG 0.446002 8_1:-2698369 None:intergenic
TGAAGCTCATCACTTAGTAT+TGG 0.457504 8_1:-2695854 None:intergenic
GAATTCAACTATTACATGCT+TGG 0.460309 8_1:+2698482 Msa1172590:CDS
AAGAAACAATTGCTTCCCTT+CGG 0.476707 8_1:+2696761 Msa1172590:CDS
TATGGATTATATCACTGAAA+AGG 0.480155 8_1:+2696585 Msa1172590:CDS
CGTATCAGTCCAGGTCTGCT+TGG 0.483600 8_1:-2698255 None:intergenic
ATACTAGCAGCTGCACCAGC+AGG 0.486466 8_1:-2698659 None:intergenic
GAAAGTAAGAAGAATATGAA+TGG 0.490265 8_1:+2696874 Msa1172590:CDS
GCTACCTTTATTCTCTGAAG+AGG 0.492468 8_1:-2698592 None:intergenic
CTTGGAGTTGAAGAAACAAA+AGG 0.497843 8_1:+2698500 Msa1172590:CDS
TTATGCTAGTGATGTAATAC+AGG 0.499721 8_1:+2696415 Msa1172590:intron
GACTACTAGAAGAACTTTCG+AGG 0.501559 8_1:-2698131 None:intergenic
ATGCTAAAAGGACTAACAAA+AGG 0.505098 8_1:-2698689 None:intergenic
GCTCATCACTTAGTATTGGT+TGG 0.522372 8_1:-2695850 None:intergenic
AGAGCTTGAATTGGAAAAGA+GGG 0.523110 8_1:+2697044 Msa1172590:CDS
GACGAATTAGCGAAGTATAA+CGG 0.524430 8_1:+2696940 Msa1172590:CDS
GGAAATAGACCAAGCAGACC+TGG 0.525005 8_1:+2698246 Msa1172590:CDS
AACGAGAAGAATTTGCGAAA+GGG 0.527885 8_1:+2698222 Msa1172590:CDS
GTATAACGGTGCTACTGCTA+TGG 0.531287 8_1:+2696954 Msa1172590:CDS
AAGAGCTTGAATTGGAAAAG+AGG 0.534837 8_1:+2697043 Msa1172590:CDS
AAGAGCTTGTGTACCAAAGA+TGG 0.535326 8_1:+2697908 Msa1172590:CDS
TGTCTCTTCGAATGCTACAT+TGG 0.540927 8_1:+2698080 Msa1172590:CDS
AAGCCAAGGAAAAGTTGTGC+TGG 0.541224 8_1:+2698315 Msa1172590:CDS
CTTGGTGCAGTCTTGTCTTG+TGG 0.545917 8_1:-2697989 None:intergenic
CTTAATATAATATAAACAAA+GGG 0.553082 8_1:-2698734 None:intergenic
GAATTGGAAAAGAGGGAAGT+AGG 0.556434 8_1:+2697051 Msa1172590:CDS
AATACAAAATTACAAGCAGA+GGG 0.556657 8_1:+2696624 Msa1172590:CDS
ACTTAATATAATATAAACAA+AGG 0.563754 8_1:-2698735 None:intergenic
AAATAAAATTATAAATGAGA+TGG 0.564223 8_1:+2696852 Msa1172590:CDS
AACCGTTTGGTAAAATCTCA+AGG 0.567264 8_1:+2696042 Msa1172590:CDS
CAACGAGAAGAATTTGCGAA+AGG 0.571169 8_1:+2698221 Msa1172590:CDS
TAATACAAAATTACAAGCAG+AGG 0.573232 8_1:+2696623 Msa1172590:CDS
TTACTATGAACGAGGTAATG+AGG 0.579284 8_1:+2695911 Msa1172590:CDS
AATCAAATCTATCAAAGCCA+AGG 0.579355 8_1:+2698301 Msa1172590:CDS
GAGCAAATCATATGAAAATG+TGG 0.585519 8_1:+2698545 Msa1172590:CDS
TGATAGGATTAAAAGCCTGC+TGG 0.586016 8_1:+2698644 Msa1172590:CDS
GAGAAGAATTTGCGAAAGGG+TGG 0.586396 8_1:+2698225 Msa1172590:CDS
TATTGAATTGAATAGACTGA+AGG 0.588485 8_1:+2696669 Msa1172590:CDS
ACTACTAGAAGAACTTTCGA+GGG 0.589577 8_1:-2698130 None:intergenic
AGAGGGAAATAAGCCTTGAA+AGG 0.591640 8_1:+2696641 Msa1172590:CDS
GAATAAAGGTAGCAATAGCA+AGG 0.591883 8_1:+2698602 Msa1172590:CDS
ACTCTCTTCAATCTTGTCGG+TGG 0.595803 8_1:-2698366 None:intergenic
GAAAACCTACGTATCAGTCC+AGG 0.605209 8_1:-2698264 None:intergenic
TCAACATCTGATCGTTGACA+TGG 0.605955 8_1:-2696900 None:intergenic
GCAGACCTGGACTGATACGT+AGG 0.622599 8_1:+2698259 Msa1172590:CDS
TGTTATGCAAGAAGAAGTTG+AGG 0.632417 8_1:+2698425 Msa1172590:CDS
AACAAGTTGAAATATTGCAG+AGG 0.646640 8_1:+2697866 Msa1172590:CDS
TTGTTCTATTACTATGAACG+AGG 0.654006 8_1:+2695903 Msa1172590:CDS
ACTAGAAGAACTTTCGAGGG+TGG 0.654936 8_1:-2698127 None:intergenic
GCAGAGGAACAGATTTGACA+TGG 0.661003 8_1:+2697882 Msa1172590:CDS
ACTAGCAAGAAACAAATCAG+AGG 0.695668 8_1:+2697092 Msa1172590:CDS
CCAAGGAAAAGTTGTGCTGG+TGG 0.704338 8_1:+2698318 Msa1172590:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTATTTATTTATTTTTAATT+TGG + chr8_1:2696150-2696169 Msa1172590:intron 0.0%
!! AAATAAAATTATAAATGAGA+TGG + chr8_1:2696852-2696871 Msa1172590:CDS 10.0%
!!! ATAATTTTAATAATACAAGA+TGG - chr8_1:2697206-2697225 None:intergenic 10.0%
!!! CTAAATTTTGTTAAAATAAT+AGG + chr8_1:2697664-2697683 Msa1172590:intron 10.0%
!! CTTAATATAATATAAACAAA+GGG - chr8_1:2698737-2698756 None:intergenic 10.0%
!! ACTTAATATAATATAAACAA+AGG - chr8_1:2698738-2698757 None:intergenic 10.0%
!! ATAAATGAATGAAGTAAATA+GGG - chr8_1:2696119-2696138 None:intergenic 15.0%
!! AACAAAAAATAACACATAAA+AGG - chr8_1:2696443-2696462 None:intergenic 15.0%
!!! TAAAGACAAATCAATTTTTT+GGG - chr8_1:2696498-2696517 None:intergenic 15.0%
!!! TTAAAGACAAATCAATTTTT+TGG - chr8_1:2696499-2696518 None:intergenic 15.0%
!! TATTAAAGAAAAAATAGAAG+AGG + chr8_1:2696798-2696817 Msa1172590:CDS 15.0%
!! TATTCTTATGTTCATTAATA+TGG + chr8_1:2697158-2697177 Msa1172590:intron 15.0%
!! ATTCTTATGTTCATTAATAT+GGG + chr8_1:2697159-2697178 Msa1172590:intron 15.0%
!!! AAGTAATGTTGATTAATTAT+AGG - chr8_1:2697625-2697644 None:intergenic 15.0%
!! TACCTTAAATTTATTGTTTA+AGG + chr8_1:2697723-2697742 Msa1172590:intron 15.0%
!!! TAATAAAAAGCATAATAGAA+AGG + chr8_1:2697966-2697985 Msa1172590:CDS 15.0%
!! CATAAATGAATGAAGTAAAT+AGG - chr8_1:2696120-2696139 None:intergenic 20.0%
!!! GTTTAGTTTCTTTATTAAGT+TGG + chr8_1:2696294-2696313 Msa1172590:intron 20.0%
!! AATCCTACAAAAAAAATCAT+TGG + chr8_1:2697574-2697593 Msa1172590:intron 20.0%
!! ATCCTACAAAAAAAATCATT+GGG + chr8_1:2697575-2697594 Msa1172590:intron 20.0%
!! AATCAACATTACTTAAGTTA+TGG + chr8_1:2697631-2697650 Msa1172590:intron 20.0%
!! TTGTTAAAATAATAGGTAGT+AGG + chr8_1:2697671-2697690 Msa1172590:intron 20.0%
!!! AAACAATAAATTTAAGGTAG+AGG - chr8_1:2697722-2697741 None:intergenic 20.0%
!! AGCCTTAAACAATAAATTTA+AGG - chr8_1:2697728-2697747 None:intergenic 20.0%
!! TTTCAATTTATTAAGCAAAC+TGG - chr8_1:2698178-2698197 None:intergenic 20.0%
!! TGCTTAATAAATTGAAAAGA+TGG + chr8_1:2698181-2698200 Msa1172590:CDS 20.0%
! AATTAACAGAGGAAAAATGA+TGG - chr8_1:2696070-2696089 None:intergenic 25.0%
! AATTGAAGGTTGTGAAAATA+TGG + chr8_1:2696567-2696586 Msa1172590:CDS 25.0%
!! TATGGATTATATCACTGAAA+AGG + chr8_1:2696585-2696604 Msa1172590:CDS 25.0%
! TAATACAAAATTACAAGCAG+AGG + chr8_1:2696623-2696642 Msa1172590:CDS 25.0%
! AATACAAAATTACAAGCAGA+GGG + chr8_1:2696624-2696643 Msa1172590:CDS 25.0%
! ATTCAATAAGTTTCCTTTCA+AGG - chr8_1:2696657-2696676 None:intergenic 25.0%
! TATTGAATTGAATAGACTGA+AGG + chr8_1:2696669-2696688 Msa1172590:CDS 25.0%
! GAAAGTAAGAAGAATATGAA+TGG + chr8_1:2696874-2696893 Msa1172590:CDS 25.0%
! ACATTCAACACTAATCTATT+GGG + chr8_1:2697283-2697302 Msa1172590:intron 25.0%
! ATATAAGAGTTTATCCATTC+GGG - chr8_1:2697337-2697356 None:intergenic 25.0%
! GATATAAGAGTTTATCCATT+CGG - chr8_1:2697338-2697357 None:intergenic 25.0%
! AGAAAAGAGTTTATAAAGAG+TGG - chr8_1:2697437-2697456 None:intergenic 25.0%
!!! TGCTTGATAATTTTTTCTAC+AGG + chr8_1:2697777-2697796 Msa1172590:intron 25.0%
! ATTTGCTCATTTCATCATAT+TGG - chr8_1:2698533-2698552 None:intergenic 25.0%
! AAATTGGTTATTCAGATGAT+AGG + chr8_1:2698628-2698647 Msa1172590:CDS 25.0%
TTGTTCTATTACTATGAACG+AGG + chr8_1:2695903-2695922 Msa1172590:CDS 30.0%
! TACCTTGAGATTTTACCAAA+CGG - chr8_1:2696047-2696066 None:intergenic 30.0%
GAGAAACTATGAATTAACAG+AGG - chr8_1:2696081-2696100 None:intergenic 30.0%
! AAGTGAATAAATGAAGTGTC+TGG + chr8_1:2696208-2696227 Msa1172590:intron 30.0%
!! TGAACATGATTTTGAGGAAA+TGG + chr8_1:2696379-2696398 Msa1172590:intron 30.0%
!! GATTTTGAGGAAATGGAAAA+TGG + chr8_1:2696386-2696405 Msa1172590:intron 30.0%
TTATGCTAGTGATGTAATAC+AGG + chr8_1:2696415-2696434 Msa1172590:intron 30.0%
ATTGAATTGCCACAAATTGA+AGG + chr8_1:2696553-2696572 Msa1172590:CDS 30.0%
! TTTTCACAACCTTCAATTTG+TGG - chr8_1:2696565-2696584 None:intergenic 30.0%
!! AGATAGAGCATTACAAGTTT+TGG + chr8_1:2697002-2697021 Msa1172590:CDS 30.0%
!!! TACAAGTTTTGGAAATGAAG+AGG + chr8_1:2697013-2697032 Msa1172590:CDS 30.0%
ATGTTCATTAATATGGGACT+TGG + chr8_1:2697165-2697184 Msa1172590:intron 30.0%
!! AACCTAGTCTGCTTTTAATA+TGG + chr8_1:2697231-2697250 Msa1172590:intron 30.0%
TACCATATTAAAAGCAGACT+AGG - chr8_1:2697236-2697255 None:intergenic 30.0%
!! TCTGCTTTTAATATGGTACT+TGG + chr8_1:2697238-2697257 Msa1172590:intron 30.0%
! GATTAGTGTTGAATGTGAAA+GGG - chr8_1:2697279-2697298 None:intergenic 30.0%
! AGATTAGTGTTGAATGTGAA+AGG - chr8_1:2697280-2697299 None:intergenic 30.0%
CACATTCAACACTAATCTAT+TGG + chr8_1:2697282-2697301 Msa1172590:intron 30.0%
TGCTCACAAAACAATCATAT+TGG - chr8_1:2697497-2697516 None:intergenic 30.0%
AATACAACCAGAAACTATGT+TGG + chr8_1:2697542-2697561 Msa1172590:intron 30.0%
!!! CACCCAATGATTTTTTTTGT+AGG - chr8_1:2697580-2697599 None:intergenic 30.0%
! CACTTATTTCTTCTTGTATC+TGG - chr8_1:2697816-2697835 None:intergenic 30.0%
! AACAAGTTGAAATATTGCAG+AGG + chr8_1:2697866-2697885 Msa1172590:CDS 30.0%
AATCAAATCTATCAAAGCCA+AGG + chr8_1:2698301-2698320 Msa1172590:CDS 30.0%
GGTTTCTCTAGATTCATAAA+TGG - chr8_1:2698348-2698367 None:intergenic 30.0%
GAATTCAACTATTACATGCT+TGG + chr8_1:2698482-2698501 Msa1172590:CDS 30.0%
GAGCAAATCATATGAAAATG+TGG + chr8_1:2698545-2698564 Msa1172590:CDS 30.0%
ATGCTAAAAGGACTAACAAA+AGG - chr8_1:2698692-2698711 None:intergenic 30.0%
! TAGTCCTTTTAGCATATTTC+AGG + chr8_1:2698697-2698716 Msa1172590:CDS 30.0%
TGATCCTGAAATATGCTAAA+AGG - chr8_1:2698704-2698723 None:intergenic 30.0%
TGAAGCTCATCACTTAGTAT+TGG - chr8_1:2695857-2695876 None:intergenic 35.0%
TTACTATGAACGAGGTAATG+AGG + chr8_1:2695911-2695930 Msa1172590:CDS 35.0%
GAACTAATTCACTTGTTTGC+TGG + chr8_1:2695945-2695964 Msa1172590:CDS 35.0%
AGCTTCAAAAAGAAACCGTT+TGG + chr8_1:2696029-2696048 Msa1172590:CDS 35.0%
AACCGTTTGGTAAAATCTCA+AGG + chr8_1:2696042-2696061 Msa1172590:CDS 35.0%
CATAATATATGCAGGGGTTA+GGG - chr8_1:2696242-2696261 None:intergenic 35.0%
GCATTGCATAATATATGCAG+GGG - chr8_1:2696248-2696267 None:intergenic 35.0%
GGCATTGCATAATATATGCA+GGG - chr8_1:2696249-2696268 None:intergenic 35.0%
! AGACTCTGAACATGATTTTG+AGG + chr8_1:2696373-2696392 Msa1172590:intron 35.0%
TTCCCAACTGAAAATGCAAT+TGG + chr8_1:2696708-2696727 Msa1172590:CDS 35.0%
! CTCCAATTGCATTTTCAGTT+GGG - chr8_1:2696713-2696732 None:intergenic 35.0%
! TCTCCAATTGCATTTTCAGT+TGG - chr8_1:2696714-2696733 None:intergenic 35.0%
AAGAAACAATTGCTTCCCTT+CGG + chr8_1:2696761-2696780 Msa1172590:CDS 35.0%
!!! AATTTTGGTTTCGAACCGAA+GGG - chr8_1:2696779-2696798 None:intergenic 35.0%
!!! TAATTTTGGTTTCGAACCGA+AGG - chr8_1:2696780-2696799 None:intergenic 35.0%
GACGAATTAGCGAAGTATAA+CGG + chr8_1:2696940-2696959 Msa1172590:CDS 35.0%
GAGAAACAAAGAGCTTGAAT+TGG + chr8_1:2697035-2697054 Msa1172590:CDS 35.0%
AAGAGCTTGAATTGGAAAAG+AGG + chr8_1:2697043-2697062 Msa1172590:CDS 35.0%
AGAGCTTGAATTGGAAAAGA+GGG + chr8_1:2697044-2697063 Msa1172590:CDS 35.0%
ACTAGCAAGAAACAAATCAG+AGG + chr8_1:2697092-2697111 Msa1172590:CDS 35.0%
! TGTTTTGTGAGCAAAGTGAA+AGG + chr8_1:2697504-2697523 Msa1172590:intron 35.0%
AGCATATGAAAAGCCATCTT+TGG - chr8_1:2697924-2697943 None:intergenic 35.0%
! GATGGCTTTTCATATGCTTA+AGG + chr8_1:2697926-2697945 Msa1172590:CDS 35.0%
CAATTCTTTGCCTGAAATCT+TGG - chr8_1:2698010-2698029 None:intergenic 35.0%
ACTACTAGAAGAACTTTCGA+GGG - chr8_1:2698133-2698152 None:intergenic 35.0%
AACGAGAAGAATTTGCGAAA+GGG + chr8_1:2698222-2698241 Msa1172590:CDS 35.0%
TGTTATGCAAGAAGAAGTTG+AGG + chr8_1:2698425-2698444 Msa1172590:CDS 35.0%
CTTGGAGTTGAAGAAACAAA+AGG + chr8_1:2698500-2698519 Msa1172590:CDS 35.0%
GATTCCTCTTCAGAGAATAA+AGG + chr8_1:2698588-2698607 Msa1172590:CDS 35.0%
GAATAAAGGTAGCAATAGCA+AGG + chr8_1:2698602-2698621 Msa1172590:CDS 35.0%
AGCAATAGCAAGGATCAAAT+TGG + chr8_1:2698612-2698631 Msa1172590:CDS 35.0%
!! GCTCATCACTTAGTATTGGT+TGG - chr8_1:2695853-2695872 None:intergenic 40.0%
GCATAATATATGCAGGGGTT+AGG - chr8_1:2696243-2696262 None:intergenic 40.0%
! GGGCATTGCATAATATATGC+AGG - chr8_1:2696250-2696269 None:intergenic 40.0%
!! TCACTTCTTTTGCTTGCTGA+AGG - chr8_1:2696347-2696366 None:intergenic 40.0%
AGAGGGAAATAAGCCTTGAA+AGG + chr8_1:2696641-2696660 Msa1172590:CDS 40.0%
TCAACATCTGATCGTTGACA+TGG - chr8_1:2696903-2696922 None:intergenic 40.0%
GAATTGGAAAAGAGGGAAGT+AGG + chr8_1:2697051-2697070 Msa1172590:CDS 40.0%
ACTGGCACATCTAATCTAGT+CGG - chr8_1:2697413-2697432 None:intergenic 40.0%
GAGTTTATAAAGAGTGGCAC+TGG - chr8_1:2697431-2697450 None:intergenic 40.0%
CCATGAACCAACATAGTTTC+TGG - chr8_1:2697552-2697571 None:intergenic 40.0%
!! CCAGAAACTATGTTGGTTCA+TGG + chr8_1:2697549-2697568 Msa1172590:intron 40.0%
AAGAGCTTGTGTACCAAAGA+TGG + chr8_1:2697908-2697927 Msa1172590:CDS 40.0%
TGTCTCTTCGAATGCTACAT+TGG + chr8_1:2698080-2698099 Msa1172590:CDS 40.0%
GACTACTAGAAGAACTTTCG+AGG - chr8_1:2698134-2698153 None:intergenic 40.0%
CAACGAGAAGAATTTGCGAA+AGG + chr8_1:2698221-2698240 Msa1172590:CDS 40.0%
! ACGTAGGTTTTCAATGTCGA+TGG + chr8_1:2698275-2698294 Msa1172590:CDS 40.0%
GACACTCTCTTCAATCTTGT+CGG - chr8_1:2698372-2698391 None:intergenic 40.0%
!! GAGAGTGTCTTTCAGTGATT+CGG + chr8_1:2698383-2698402 Msa1172590:CDS 40.0%
! GCTACCTTTATTCTCTGAAG+AGG - chr8_1:2698595-2698614 None:intergenic 40.0%
TGATAGGATTAAAAGCCTGC+TGG + chr8_1:2698644-2698663 Msa1172590:CDS 40.0%
CTGTCCTCGTGAACTCAATT+GGG - chr8_1:2696275-2696294 None:intergenic 45.0%
ACTGTCCTCGTGAACTCAAT+TGG - chr8_1:2696276-2696295 None:intergenic 45.0%
!! GTATAACGGTGCTACTGCTA+TGG + chr8_1:2696954-2696973 Msa1172590:CDS 45.0%
AATCTATTGGGTTTAGCGCG+TGG + chr8_1:2697295-2697314 Msa1172590:intron 45.0%
! TTAGCGCGTGGTTGATTTCT+TGG + chr8_1:2697307-2697326 Msa1172590:intron 45.0%
GATTTCTTGGATGACCCGAA+TGG + chr8_1:2697320-2697339 Msa1172590:intron 45.0%
GCAGAGGAACAGATTTGACA+TGG + chr8_1:2697882-2697901 Msa1172590:CDS 45.0%
CAAGACTGCACCAAGATTTC+AGG + chr8_1:2697997-2698016 Msa1172590:CDS 45.0%
ACTAGAAGAACTTTCGAGGG+TGG - chr8_1:2698130-2698149 None:intergenic 45.0%
GAGAAGAATTTGCGAAAGGG+TGG + chr8_1:2698225-2698244 Msa1172590:CDS 45.0%
GAAAACCTACGTATCAGTCC+AGG - chr8_1:2698267-2698286 None:intergenic 45.0%
AAGCCAAGGAAAAGTTGTGC+TGG + chr8_1:2698315-2698334 Msa1172590:CDS 45.0%
ACTCTCTTCAATCTTGTCGG+TGG - chr8_1:2698369-2698388 None:intergenic 45.0%
!!! TATTTTTTCTTTAATAATTT+TGG - chr8_1:2696794-2696813 None:intergenic 5.0%
CTCGTGAACTCAATTGGGAG+GGG - chr8_1:2696270-2696289 None:intergenic 50.0%
CCTCGTGAACTCAATTGGGA+GGG - chr8_1:2696271-2696290 None:intergenic 50.0%
TCCTCGTGAACTCAATTGGG+AGG - chr8_1:2696272-2696291 None:intergenic 50.0%
! CTTGGTGCAGTCTTGTCTTG+TGG - chr8_1:2697992-2698011 None:intergenic 50.0%
GGAAATAGACCAAGCAGACC+TGG + chr8_1:2698246-2698265 Msa1172590:CDS 50.0%
! CCACCAGCACAACTTTTCCT+TGG - chr8_1:2698321-2698340 None:intergenic 50.0%
CCAAGGAAAAGTTGTGCTGG+TGG + chr8_1:2698318-2698337 Msa1172590:CDS 50.0%
CCCTCCCAATTGAGTTCACG+AGG + chr8_1:2696268-2696287 Msa1172590:intron 55.0%
CGTATCAGTCCAGGTCTGCT+TGG - chr8_1:2698258-2698277 None:intergenic 55.0%
GCAGACCTGGACTGATACGT+AGG + chr8_1:2698259-2698278 Msa1172590:CDS 55.0%
ATACTAGCAGCTGCACCAGC+AGG - chr8_1:2698662-2698681 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 2695837 2698820 2695837 ID=Msa1172590;Name=Msa1172590
chr8_1 mRNA 2695837 2698820 2695837 ID=Msa1172590-mRNA-1;Parent=Msa1172590;Name=Msa1172590-mRNA-1;_AED=0.03;_eAED=0.03;_QI=30|0.66|0.75|1|0.66|0.5|4|92|574
chr8_1 exon 2695837 2696063 2695837 ID=Msa1172590-mRNA-1:exon:994;Parent=Msa1172590-mRNA-1
chr8_1 exon 2696424 2696436 2696424 ID=Msa1172590-mRNA-1:exon:995;Parent=Msa1172590-mRNA-1
chr8_1 exon 2696529 2697113 2696529 ID=Msa1172590-mRNA-1:exon:996;Parent=Msa1172590-mRNA-1
chr8_1 exon 2697799 2698820 2697799 ID=Msa1172590-mRNA-1:exon:997;Parent=Msa1172590-mRNA-1
chr8_1 five_prime_UTR 2695837 2695866 2695837 ID=Msa1172590-mRNA-1:five_prime_utr;Parent=Msa1172590-mRNA-1
chr8_1 CDS 2695867 2696063 2695867 ID=Msa1172590-mRNA-1:cds;Parent=Msa1172590-mRNA-1
chr8_1 CDS 2696424 2696436 2696424 ID=Msa1172590-mRNA-1:cds;Parent=Msa1172590-mRNA-1
chr8_1 CDS 2696529 2697113 2696529 ID=Msa1172590-mRNA-1:cds;Parent=Msa1172590-mRNA-1
chr8_1 CDS 2697799 2698728 2697799 ID=Msa1172590-mRNA-1:cds;Parent=Msa1172590-mRNA-1
chr8_1 three_prime_UTR 2698729 2698820 2698729 ID=Msa1172590-mRNA-1:three_prime_utr;Parent=Msa1172590-mRNA-1
Gene Sequence

>Msa1172590

ATGAGCTTCAATCGTATTGATATTTTAACATTGTCTTTGTTCTATTACTATGAACGAGGTAATGAGGTAGTGATTGTTGAACTAATTCACTTGTTTGCTGGACTACATGATTATCAGACTGAGCTTCATCGTTTTAGCTTCAATTGTTGCACTCAAGATTTCAGCTTCAAAAAGAAACCGTTTGGTAAAATCTCAAGTGATGTAATACAGAATGAAGAAAAGAAGAAGATTAAAATTGAATTGCCACAAATTGAAGGTTGTGAAAATATGGATTATATCACTGAAAAGGAGTTGCTGCAGAATTTAATACAAAATTACAAGCAGAGGGAAATAAGCCTTGAAAGGAAACTTATTGAATTGAATAGACTGAAGGAAGAGAAATCAGTCATTTCCCAACTGAAAATGCAATTGGAGAAAAAGAGAGCAAAATTAAAATCTCTTGAAGAAACAATTGCTTCCCTTCGGTTCGAAACCAAAATTATTAAAGAAAAAATAGAAGAGGATATCATGTGTAAAATGCAGTTAGAGATTGCAAATAAAATTATAAATGAGATGGAAAGTAAGAAGAATATGAATGGAAGCCATGTCAACGATCAGATGTTGACGCTTCAACAACGAGTTGACGAATTAGCGAAGTATAACGGTGCTACTGCTATGGTGAATAAGAAACATGAACATGTTGAAGATAGAGCATTACAAGTTTTGGAAATGAAGAGGAGAAACAAAGAGCTTGAATTGGAAAAGAGGGAAGTAGGAACTAAGTTAGCTATTGCACTAGCAAGAAACAAATCAGAGGAAACAAAAGTGATCCAGATACAAGAAGAAATAAGTGATTTACAACATGTTCATGAACAACTTTCAGAACAAGTTGAAATATTGCAGAGGAACAGATTTGACATGGTACAAGAGCTTGTGTACCAAAGATGGCTTTTCATATGCTTAAGGTATGAAGTTAACAATCATAATAAAAAGCATAATAGAAAGGCCACAAGACAAGACTGCACCAAGATTTCAGGCAAAGAATTGTTGTATGATGAGAAAACTCATTCATTCACATCTGATTCTGCACATGACACTGTCTCTTCGAATGCTACATTGGATGATTTTGATGAAATCGAAACTACCACCCTCGAAAGTTCTTCTAGTAGTCAAAGTAACAACAGTAGCAATTCCAGTTTGCTTAATAAATTGAAAAGATGGAAGAAATCAAAAGATTACAACGAGAAGAATTTGCGAAAGGGTGGAAATAGACCAAGCAGACCTGGACTGATACGTAGGTTTTCAATGTCGATGGTTGAATCAAATCTATCAAAGCCAAGGAAAAGTTGTGCTGGTGGTGATCCATTTATGAATCTAGAGAAACCACCGACAAGATTGAAGAGAGTGTCTTTCAGTGATTCGGTTAAAAAATTGACTTATCATGTTATGCAAGAAGAAGTTGAGGATGTAACTGATGAAAATGAAACTAACTCTCAGCTGAATTCAACTATTACATGCTTGGAGTTGAAGAAACAAAAGGAAGAAGACCAATATGATGAAATGAGCAAATCATATGAAAATGTGGTTTGCAACTATGAAAAAGTTGATTCCTCTTCAGAGAATAAAGGTAGCAATAGCAAGGATCAAATTGGTTATTCAGATGATAGGATTAAAAGCCTGCTGGTGCAGCTGCTAGTATATTTTTTCCTTTTGTTAGTCCTTTTAGCATATTTCAGGATCAAATAA

Protein sequence

>Msa1172590

MSFNRIDILTLSLFYYYERGNEVVIVELIHLFAGLHDYQTELHRFSFNCCTQDFSFKKKPFGKISSDVIQNEEKKKIKIELPQIEGCENMDYITEKELLQNLIQNYKQREISLERKLIELNRLKEEKSVISQLKMQLEKKRAKLKSLEETIASLRFETKIIKEKIEEDIMCKMQLEIANKIINEMESKKNMNGSHVNDQMLTLQQRVDELAKYNGATAMVNKKHEHVEDRALQVLEMKRRNKELELEKREVGTKLAIALARNKSEETKVIQIQEEISDLQHVHEQLSEQVEILQRNRFDMVQELVYQRWLFICLRYEVNNHNKKHNRKATRQDCTKISGKELLYDEKTHSFTSDSAHDTVSSNATLDDFDEIETTTLESSSSSQSNNSSNSSLLNKLKRWKKSKDYNEKNLRKGGNRPSRPGLIRRFSMSMVESNLSKPRKSCAGGDPFMNLEKPPTRLKRVSFSDSVKKLTYHVMQEEVEDVTDENETNSQLNSTITCLELKKQKEEDQYDEMSKSYENVVCNYEKVDSSSENKGSNSKDQIGYSDDRIKSLLVQLLVYFFLLLVLLAYFRIK*