AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0951710


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0951710 MtrunA17_Chr6g0468511 85.115 477 23 2 1 429 1 477 0.0 796
Msa0951710 MtrunA17_Chr6g0468521 76.939 477 62 2 1 429 1 477 0.0 710
Msa0951710 MtrunA17_Chr6g0468531 71.967 478 85 3 1 429 1 478 0.0 669
Msa0951710 MtrunA17_Chr1g0202761 47.856 443 201 4 2 414 4 446 4.04e-136 400
Msa0951710 MtrunA17_Chr7g0248051 48.804 418 194 2 11 408 50 467 1.84e-122 365
Msa0951710 MtrunA17_Chr5g0412541 38.835 412 231 3 23 413 28 439 1.35e-95 295
Msa0951710 MtrunA17_Chr3g0132531 39.583 432 239 4 5 414 19 450 2.26e-93 290
Msa0951710 MtrunA17_Chr8g0368001 35.831 427 250 5 10 413 28 453 7.01e-91 284
Msa0951710 MtrunA17_Chr7g0254521 37.101 407 235 3 29 414 29 435 5.67e-90 281
Msa0951710 MtrunA17_Chr5g0412771 37.939 427 243 4 10 414 34 460 2.06e-88 278
Msa0951710 MtrunA17_Chr1g0154441 42.486 346 179 2 89 414 1 346 4.62e-87 270
Msa0951710 MtrunA17_Chr7g0254511 34.101 434 260 3 1 414 6 433 1.36e-83 264
Msa0951710 MtrunA17_Chr4g0024501 36.830 448 247 6 3 414 22 469 1.58e-81 260
Msa0951710 MtrunA17_Chr2g0322671 36.829 410 231 5 30 414 51 457 1.20e-77 249
Msa0951710 MtrunA17_Chr5g0412571 39.394 363 192 4 76 414 27 385 9.60e-76 242
Msa0951710 MtrunA17_Chr7g0254531 36.994 346 198 2 89 414 1 346 1.43e-72 233
Msa0951710 MtrunA17_Chr2g0288281 36.023 347 201 2 89 414 1 347 1.52e-71 230
Msa0951710 MtrunA17_Chr6g0460541 38.110 328 184 1 88 396 4 331 2.84e-70 228
Msa0951710 MtrunA17_Chr5g0442331 33.820 411 249 4 25 413 41 450 9.84e-69 226
Msa0951710 MtrunA17_Chr2g0317131 32.426 441 267 5 2 414 11 448 6.55e-58 197
Msa0951710 MtrunA17_Chr1g0208791 30.365 438 278 6 1 412 10 446 1.52e-55 191
Msa0951710 MtrunA17_Chr3g0132541 36.120 299 188 3 2 298 13 310 3.31e-55 189
Msa0951710 MtrunA17_Chr6g0483361 30.645 434 268 6 6 414 7 432 3.99e-55 189
Msa0951710 MtrunA17_Chr6g0483381 29.773 440 275 7 1 414 3 434 4.71e-53 184
Msa0951710 MtrunA17_Chr8g0392601 29.612 412 260 4 22 411 11 414 1.73e-52 182
Msa0951710 MtrunA17_Chr1g0208821 30.682 440 278 5 1 414 8 446 2.90e-52 182
Msa0951710 MtrunA17_Chr2g0317171 31.151 443 275 5 1 414 1 442 1.38e-51 181
Msa0951710 MtrunA17_Chr2g0317161 32.381 420 252 5 18 414 26 436 2.00e-51 180
Msa0951710 MtrunA17_Chr2g0317221 35.057 348 205 2 88 414 9 356 4.40e-51 177
Msa0951710 MtrunA17_Chr1g0208881 29.833 419 268 4 13 407 7 423 4.94e-50 176
Msa0951710 MtrunA17_Chr6g0477961 28.995 438 281 6 1 414 3 434 9.43e-50 175
Msa0951710 MtrunA17_Chr5g0440661 32.635 334 165 6 89 413 1 283 4.62e-49 169
Msa0951710 MtrunA17_Chr2g0317151 32.798 436 262 6 2 414 11 438 2.05e-48 172
Msa0951710 MtrunA17_Chr6g0460531 37.209 258 157 3 14 266 4 261 6.38e-48 164
Msa0951710 MtrunA17_Chr7g0251331 27.845 413 276 3 24 414 19 431 1.90e-47 169
Msa0951710 MtrunA17_Chr6g0483351 31.805 349 215 3 89 414 1 349 3.64e-47 167
Msa0951710 MtrunA17_Chr1g0208891 29.691 421 270 4 13 407 2 422 1.28e-46 167
Msa0951710 MtrunA17_Chr6g0483341 29.880 415 260 5 23 414 41 447 1.68e-46 167
Msa0951710 MtrunA17_Chr6g0483161 32.822 326 217 1 88 411 2 327 2.84e-46 163
Msa0951710 MtrunA17_Chr6g0483331 30.120 415 259 5 23 414 12 418 1.37e-45 164
Msa0951710 MtrunA17_Chr1g0203791 27.230 426 286 5 4 407 39 462 7.40e-43 158
Msa0951710 MtrunA17_Chr5g0397991 27.506 429 283 5 1 407 41 463 1.57e-42 157
Msa0951710 MtrunA17_Chr7g0254501 32.692 260 156 1 174 414 2 261 3.86e-41 148
Msa0951710 MtrunA17_Chr7g0251321 29.341 334 222 3 89 414 1 328 2.45e-38 142
Msa0951710 MtrunA17_Chr6g0449061 26.969 419 281 5 20 414 19 436 2.88e-38 144
Msa0951710 MtrunA17_Chr6g0473701 27.000 400 270 4 30 407 127 526 1.46e-37 144
Msa0951710 MtrunA17_Chr6g0467321 25.858 437 282 7 13 407 12 448 3.58e-36 139
Msa0951710 MtrunA17_Chr5g0428251 25.587 426 292 5 11 412 34 458 2.16e-35 137
Msa0951710 MtrunA17_Chr8g0364761 31.707 287 180 6 25 301 48 328 2.68e-35 133
Msa0951710 MtrunA17_Chr3g0140931 26.366 421 285 6 15 412 36 454 4.30e-34 134
Msa0951710 MtrunA17_Chr8g0389801 26.027 438 288 7 1 414 1 426 5.39e-31 124
Msa0951710 MtrunA17_Chr8g0364751 44.915 118 65 0 296 413 20 137 9.93e-28 108
Msa0951710 MtrunA17_Chr4g0013031 23.077 429 302 5 3 407 42 466 3.03e-26 110
Msa0951710 MtrunA17_Chr2g0295631 22.695 423 285 7 31 413 20 440 8.84e-22 97.4
Msa0951710 MtrunA17_Chr6g0460521 34.118 170 93 1 264 414 1 170 2.04e-21 92.4
Msa0951710 MtrunA17_Chr6g0483241 35.912 181 114 1 88 266 2 182 3.54e-20 87.8
Msa0951710 MtrunA17_Chr5g0442311 31.111 180 122 1 89 266 1 180 1.43e-19 85.9
Msa0951710 MtrunA17_Chr7g0254491 34.513 113 67 2 5 116 10 116 2.91e-15 72.0
Msa0951710 MtrunA17_Chr6g0483264 25.000 160 101 1 267 407 1 160 3.06e-13 68.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0951710 AT4G00350.1 47.552 429 205 2 6 414 62 490 3.80e-138 407
Msa0951710 AT4G25640.3 48.736 435 203 2 3 417 5 439 5.88e-131 385
Msa0951710 AT4G25640.1 49.070 430 199 2 4 413 6 435 7.44e-130 384
Msa0951710 AT4G25640.2 49.070 430 199 2 4 413 6 435 1.46e-129 384
Msa0951710 AT1G47530.1 40.494 405 220 3 31 414 34 438 4.81e-100 307
Msa0951710 AT1G23300.1 37.500 424 244 3 12 414 24 447 5.38e-94 292
Msa0951710 AT1G12950.1 36.534 427 249 4 9 413 43 469 6.39e-94 292
Msa0951710 AT3G26590.1 37.647 425 244 3 10 413 23 447 1.85e-92 288
Msa0951710 AT5G38030.1 36.028 433 254 4 2 413 17 447 7.87e-92 286
Msa0951710 AT5G65380.1 38.106 433 241 5 2 413 13 439 1.85e-90 282
Msa0951710 AT5G44050.1 38.479 434 240 4 2 414 16 443 1.86e-89 280
Msa0951710 AT1G47530.2 42.775 346 178 2 89 414 1 346 3.64e-88 273
Msa0951710 AT1G61890.3 36.281 441 251 6 6 416 13 453 5.69e-85 268
Msa0951710 AT1G33100.1 36.782 435 248 4 1 414 8 436 1.43e-84 267
Msa0951710 AT1G61890.1 35.763 439 252 5 6 414 13 451 3.06e-84 267
Msa0951710 AT1G61890.2 36.219 439 250 6 6 414 13 451 3.95e-84 266
Msa0951710 AT1G33110.1 36.721 433 251 5 3 414 9 439 3.07e-83 264
Msa0951710 AT1G11670.1 35.811 444 254 6 1 414 12 454 3.09e-82 261
Msa0951710 AT3G26590.2 40.580 345 185 2 89 413 1 345 2.19e-81 256
Msa0951710 AT5G10420.1 38.929 411 230 3 25 414 31 441 3.20e-81 259
Msa0951710 AT1G33080.1 36.156 437 248 6 3 414 9 439 8.38e-81 258
Msa0951710 AT1G33080.2 36.156 437 248 6 3 414 9 439 1.42e-80 257
Msa0951710 AT1G33090.1 35.566 433 256 5 3 414 9 439 5.20e-80 256
Msa0951710 AT4G21910.3 35.891 404 238 2 32 414 55 458 4.70e-78 251
Msa0951710 AT4G21910.1 35.891 404 238 2 32 414 55 458 4.70e-78 251
Msa0951710 AT4G21910.2 36.139 404 237 2 32 414 57 460 7.65e-78 250
Msa0951710 AT4G21910.4 36.139 404 237 2 32 414 57 460 7.65e-78 250
Msa0951710 AT3G21690.1 36.296 405 236 3 32 414 52 456 8.14e-78 250
Msa0951710 AT4G21903.1 36.579 380 220 2 56 414 77 456 4.15e-76 246
Msa0951710 AT4G21903.2 36.579 380 220 2 56 414 77 456 6.72e-76 246
Msa0951710 AT3G59030.1 33.820 411 249 4 25 413 45 454 1.76e-72 236
Msa0951710 AT3G03620.2 34.112 428 253 4 8 414 21 440 6.83e-72 234
Msa0951710 AT3G03620.1 34.112 428 253 4 8 414 21 440 6.83e-72 234
Msa0951710 AT5G17700.2 34.023 435 261 5 1 414 8 437 6.88e-68 224
Msa0951710 AT5G17700.1 34.023 435 261 5 1 414 8 437 6.88e-68 224
Msa0951710 AT4G21903.3 36.311 347 200 2 89 414 1 347 3.94e-67 219
Msa0951710 AT1G33110.2 34.761 397 236 5 3 378 9 403 6.47e-67 219
Msa0951710 AT5G17700.3 32.828 396 240 5 1 375 8 398 8.26e-56 190
Msa0951710 AT3G59030.2 31.099 373 234 4 25 375 45 416 4.16e-55 189
Msa0951710 AT2G04080.1 28.935 432 280 6 1 410 1 427 7.10e-54 187
Msa0951710 AT2G04080.2 28.935 432 280 6 1 410 1 427 7.96e-54 186
Msa0951710 AT2G04070.1 30.370 405 260 3 32 414 27 431 5.88e-53 184
Msa0951710 AT2G04040.1 29.128 436 282 5 1 414 1 431 4.33e-52 182
Msa0951710 AT3G23550.1 29.930 431 275 5 11 414 5 435 1.58e-51 180
Msa0951710 AT3G23560.1 29.930 431 278 5 2 408 7 437 1.91e-51 180
Msa0951710 AT2G04050.1 30.617 405 259 3 32 414 27 431 2.56e-50 177
Msa0951710 AT1G73700.1 30.716 433 266 5 4 414 8 428 1.77e-49 175
Msa0951710 AT1G71140.1 28.673 422 277 4 11 408 3 424 2.40e-48 172
Msa0951710 AT1G66760.1 27.790 439 281 6 1 414 5 432 3.68e-48 171
Msa0951710 AT1G66760.2 27.790 439 281 6 1 414 5 432 3.97e-48 171
Msa0951710 AT5G52450.1 30.404 421 260 6 18 414 19 430 1.40e-47 170
Msa0951710 AT1G15150.1 28.103 427 284 4 8 411 6 432 3.78e-47 169
Msa0951710 AT2G34360.1 29.487 390 257 5 42 414 37 425 3.80e-47 169
Msa0951710 AT1G15170.1 30.166 421 263 4 22 411 15 435 7.56e-47 168
Msa0951710 AT1G15180.1 29.286 420 274 4 15 411 17 436 3.71e-46 166
Msa0951710 AT1G15160.1 28.571 420 277 4 15 411 13 432 4.98e-46 166
Msa0951710 AT2G04100.2 28.246 439 285 6 1 414 1 434 1.26e-45 164
Msa0951710 AT2G04100.1 28.246 439 285 6 1 414 1 434 1.43e-45 164
Msa0951710 AT2G04090.1 27.664 441 285 7 1 414 1 434 7.14e-44 160
Msa0951710 AT2G34360.2 28.117 377 237 4 42 414 37 383 6.64e-43 156
Msa0951710 AT1G66780.1 26.790 433 280 8 5 407 7 432 3.06e-40 150
Msa0951710 AT1G64820.1 26.536 407 267 7 35 414 32 433 4.55e-38 144
Msa0951710 AT4G29140.1 28.784 403 257 8 31 407 55 453 5.39e-38 144
Msa0951710 AT3G23560.2 27.638 398 264 5 2 375 7 404 2.20e-36 138
Msa0951710 AT1G66760.4 26.500 400 258 6 1 375 5 393 4.38e-35 134
Msa0951710 AT1G15170.2 30.405 296 185 2 137 411 21 316 4.78e-35 133
Msa0951710 AT5G19700.1 24.943 437 294 5 1 407 1 433 1.19e-34 135
Msa0951710 AT1G15150.2 29.452 292 185 2 141 411 25 316 8.37e-33 127
Msa0951710 AT1G71870.1 23.661 448 291 7 1 407 1 438 1.92e-32 129
Msa0951710 AT2G38510.1 23.833 407 287 5 31 414 5 411 2.36e-30 122
Msa0951710 AT1G58340.1 24.221 417 293 5 13 407 40 455 1.39e-29 121
Msa0951710 AT1G66760.3 25.987 304 204 2 132 414 1 304 2.55e-25 106
Msa0951710 AT5G52050.1 22.010 418 298 3 18 407 21 438 1.26e-24 106
Msa0951710 AT5G49130.1 22.857 420 284 7 31 412 25 442 3.47e-22 99.4
Msa0951710 AT1G15180.2 26.538 260 170 2 137 375 21 280 2.78e-21 95.9
Msa0951710 AT4G23030.1 27.654 405 258 9 32 407 32 430 4.17e-21 95.9
Msa0951710 AT4G22790.1 24.879 414 261 11 38 414 36 436 8.46e-21 95.1

Find 99 sgRNAs with CRISPR-Local

Find 414 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTGGGTTTCAACCAGCATTT+AGG 0.140344 6_3:-43550139 Msa0951710:CDS
GATTGTCTTGGATGGCATTT+AGG 0.156838 6_3:-43552161 Msa0951710:CDS
TTGGCATGTTATTACATTAT+TGG 0.167145 6_3:-43550181 Msa0951710:CDS
ATATATGATATTAATTTATA+AGG 0.187662 6_3:-43548491 Msa0951710:three_prime_UTR
GGATGGCATTTAGGGAATTA+TGG 0.195593 6_3:-43552152 Msa0951710:CDS
GATCAGCTATTTCTTGTTCT+TGG 0.197547 6_3:+43552460 None:intergenic
CTCTTGGTTCCTATTCAATT+TGG 0.201001 6_3:-43552023 Msa0951710:intron
ACCCCAATCTTAAAATTTCT+TGG 0.223798 6_3:-43552483 Msa0951710:CDS
TGCCACCAAGAATGAGTATT+TGG 0.240486 6_3:+43550536 None:intergenic
CTTCTTTGTTTATTGATAAT+AGG 0.246417 6_3:-43548438 Msa0951710:three_prime_UTR
AGAGCCAACTAGCCAAATTA+AGG 0.247876 6_3:+43548459 None:intergenic
CAATCCATTCCATCCTTCTT+TGG 0.248321 6_3:+43552179 None:intergenic
AGTGAATTAGCATACTTTCT+TGG 0.258952 6_3:-43550405 Msa0951710:CDS
AGCTCATTATGCTACAATTC+TGG 0.287482 6_3:-43548253 Msa0951710:three_prime_UTR
AGGGTATACATCCCTTAATT+TGG 0.295407 6_3:-43548471 Msa0951710:three_prime_UTR
GTTTGCATTATTCTTCTTGC+TGG 0.304171 6_3:-43552069 Msa0951710:CDS
CAGCAAATCGCATGCAAATC+TGG 0.307810 6_3:-43548624 Msa0951710:CDS
GTAGAATCTCTAAACTGATA+TGG 0.321321 6_3:-43556406 Msa0951710:exon
ACACTTTGTGGCCAAGCTTA+TGG 0.321571 6_3:-43552603 Msa0951710:CDS
CTTCATCAGTGTATTTGATT+GGG 0.322121 6_3:-43552283 Msa0951710:CDS
GATGGCATTTAGGGAATTAT+GGG 0.335429 6_3:-43552151 Msa0951710:CDS
CAATTGCATCTATTCCTTGC+TGG 0.336100 6_3:-43556151 Msa0951710:intron
TCTTCATCAGTGTATTTGAT+TGG 0.340775 6_3:-43552284 Msa0951710:CDS
CATCCCTTAATTTGGCTAGT+TGG 0.350589 6_3:-43548463 Msa0951710:three_prime_UTR
ATTGTCTTGGATGGCATTTA+GGG 0.356470 6_3:-43552160 Msa0951710:CDS
TCCATCTATGCTGGTCATCT+TGG 0.367435 6_3:-43556216 Msa0951710:CDS
AAACCCAGGTAAATTGCAAT+TGG 0.368227 6_3:+43550154 None:intergenic
TGGGTTTCAACCAGCATTTA+GGG 0.376762 6_3:-43550138 Msa0951710:CDS
ATGTATCATATCCACACTTT+TGG 0.377817 6_3:+43550434 None:intergenic
TTATACTTACCAAATTGAAT+AGG 0.381628 6_3:+43552014 None:intergenic
ATGCTAAGTCTTGGTTCATC+TGG 0.381879 6_3:-43552120 Msa0951710:CDS
GTATTTGATTGGGGAATGAT+AGG 0.382555 6_3:-43552273 Msa0951710:CDS
AGCATCCAAATACTCATTCT+TGG 0.385529 6_3:-43550541 Msa0951710:CDS
GATAATCCTGTGATTGCTCT+TGG 0.400996 6_3:-43552039 Msa0951710:CDS
TCCAAGATGACCAGCATAGA+TGG 0.405561 6_3:+43556215 None:intergenic
ATAGGCTAGGACTAGTTATA+TGG 0.407919 6_3:-43548420 Msa0951710:three_prime_UTR
TATATGATATTAATTTATAA+GGG 0.408017 6_3:-43548490 Msa0951710:three_prime_UTR
CTTGGAAGTGAAAAGTTTGA+AGG 0.411941 6_3:-43556340 Msa0951710:CDS
GCATTGGTAATTTATGTCAT+TGG 0.414069 6_3:-43552207 Msa0951710:CDS
GGGGTTGCATATATATGAAT+AGG 0.423646 6_3:+43552501 None:intergenic
GATGAGACCTATTAATCTAA+TGG 0.431599 6_3:-43548310 Msa0951710:three_prime_UTR
ATAGGTGTGGTCATTGGATG+TGG 0.436144 6_3:-43550232 Msa0951710:intron
GTATTTATCTTCAAAGGTCA+TGG 0.442369 6_3:-43552557 Msa0951710:CDS
AGTGTTTCACAAACTATATC+AGG 0.454438 6_3:-43550363 Msa0951710:intron
TACTTCAGAAAATGATTACT+TGG 0.454904 6_3:-43556358 Msa0951710:CDS
ACTGCACTAGCAACACTTTG+TGG 0.456052 6_3:-43552615 Msa0951710:CDS
AATGAGTATTTGGATGCTCT+TGG 0.457837 6_3:+43550546 None:intergenic
TTGGTTCATCTGGAATGATC+TGG 0.462048 6_3:-43552110 Msa0951710:CDS
TGGAAGTTGAAGTGTTTGTA+AGG 0.463421 6_3:+43556235 None:intergenic
ACTCCCAATTGCAATTTACC+TGG 0.470979 6_3:-43550158 Msa0951710:CDS
GTCATTGGTTGGTCCAAAGA+AGG 0.471708 6_3:-43552192 Msa0951710:CDS
TGCTTGAAGAAATTTCTTGA+TGG 0.471829 6_3:+43552377 None:intergenic
AACAAGTAACAACCTTCAAA+AGG 0.472917 6_3:-43548595 Msa0951710:exon
GAATTTACAATGCTAAGTCT+TGG 0.474926 6_3:-43552129 Msa0951710:CDS
ATGTCTCAGTCTCTTCTCAT+TGG 0.479393 6_3:-43550513 Msa0951710:CDS
TGGTAATTTATGTCATTGGT+TGG 0.487806 6_3:-43552203 Msa0951710:CDS
TATGGTTGGTTACATAAACT+TGG 0.494914 6_3:-43550200 Msa0951710:CDS
GTGCTGGTATTTATCTTCAA+AGG 0.497541 6_3:-43552563 Msa0951710:CDS
ATTGTCTTGCACCATAAGCT+TGG 0.501943 6_3:+43552592 None:intergenic
AACCCAGGTAAATTGCAATT+GGG 0.503018 6_3:+43550155 None:intergenic
TTGTTTATTGATAATAGGCT+AGG 0.504442 6_3:-43548433 Msa0951710:three_prime_UTR
CAACCAGCATTTAGGGGTCA+AGG 0.506365 6_3:-43550131 Msa0951710:intron
GATAGCAAAGGAAAACATGC+AGG 0.506862 6_3:+43552407 None:intergenic
GCAAGACAATTTCAAAGTGC+TGG 0.508370 6_3:-43552579 Msa0951710:CDS
GAGCCAACTAGCCAAATTAA+GGG 0.508904 6_3:+43548460 None:intergenic
CAAGAAATAGCTGATCTAGC+TGG 0.510621 6_3:-43552453 Msa0951710:CDS
TGGATGTGGATGGCAAGTTA+TGG 0.516739 6_3:-43550218 Msa0951710:CDS
AAGGATGGAATGGATTGTCT+TGG 0.523770 6_3:-43552173 Msa0951710:CDS
GCAATGGCAAGTAATATCTC+AGG 0.528753 6_3:-43552246 Msa0951710:CDS
TTCATCAGTGTATTTGATTG+GGG 0.536727 6_3:-43552282 Msa0951710:CDS
GGAGTGAGGCAATGAAGATA+TGG 0.537586 6_3:-43556299 Msa0951710:CDS
CTCCCAATTGCAATTTACCT+GGG 0.537770 6_3:-43550157 Msa0951710:CDS
GCTTGAAGAAATTTCTTGAT+GGG 0.546951 6_3:+43552378 None:intergenic
AACAGTGAACACAAAGCCAC+TGG 0.557238 6_3:+43556264 None:intergenic
TGGTCCAAAGAAGGATGGAA+TGG 0.564378 6_3:-43552183 Msa0951710:CDS
ACTTCAACTTCCATCTATGC+TGG 0.567257 6_3:-43556225 Msa0951710:CDS
CTAAATGCTGGTTGAAACCC+AGG 0.571926 6_3:+43550140 None:intergenic
GAGCAATCACAGGATTATCA+AGG 0.572072 6_3:+43552043 None:intergenic
GTTCGTGTCTCTCATACACT+TGG 0.574446 6_3:-43550579 Msa0951710:CDS
ATCCAAATACTCATTCTTGG+TGG 0.578330 6_3:-43550538 Msa0951710:CDS
ATACCTTGACCCCTAAATGC+TGG 0.585343 6_3:+43550128 None:intergenic
TGTGGATGGCAAGTTATGGT+TGG 0.586186 6_3:-43550214 Msa0951710:CDS
ATACTTTCTTGGTATAACCA+TGG 0.593597 6_3:-43550394 Msa0951710:CDS
TTGGTTGGTCCAAAGAAGGA+TGG 0.593790 6_3:-43552188 Msa0951710:CDS
GATGGGTAAAATGATAGCAA+AGG 0.605329 6_3:+43552395 None:intergenic
TAGGAACCAAGAGCAATCAC+AGG 0.614787 6_3:+43552033 None:intergenic
CATCATCTTTACCAAAAGTG+TGG 0.615585 6_3:-43550445 Msa0951710:CDS
GGGAATGATAGGTTTAGCAA+TGG 0.621656 6_3:-43552262 Msa0951710:CDS
ATGGAATGGATTGTCTTGGA+TGG 0.624219 6_3:-43552169 Msa0951710:CDS
GGGTTTCAACCAGCATTTAG+GGG 0.642005 6_3:-43550137 Msa0951710:CDS
ATCTGGTTAGAACAGTGGTA+TGG 0.647166 6_3:-43552093 Msa0951710:CDS
GTGTGGTCATTGGATGTGGA+TGG 0.652242 6_3:-43550228 Msa0951710:CDS
ATAGCAAAGGAAAACATGCA+GGG 0.653449 6_3:+43552408 None:intergenic
GAATGATCTGGTTAGAACAG+TGG 0.653843 6_3:-43552098 Msa0951710:CDS
AAGATGCAAACTAACCAGCA+AGG 0.654580 6_3:+43556137 None:intergenic
TGAAACACTGTTGAGAACCA+TGG 0.655935 6_3:+43550377 None:intergenic
AGGCAAGAGTAGTATGCATG+TGG 0.668326 6_3:+43552521 None:intergenic
TGGCAAGTAATATCTCAGGA+TGG 0.670260 6_3:-43552242 Msa0951710:CDS
ATGGAAGATAGCACTTCCAG+TGG 0.698090 6_3:-43556280 Msa0951710:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATATATATATATATATATA+TGG - chr6_3:43554854-43554873 Msa0951710:intron 0.0%
!!! TTTTAAAAATATTAAGGTAT+GGG + chr6_3:43548989-43549008 None:intergenic 10.0%
!! TAAATAGAAAAATGATAAAA+AGG + chr6_3:43550551-43550570 None:intergenic 10.0%
!!! ATTTTTTTTTTTTTAAGGAA+AGG + chr6_3:43551847-43551866 None:intergenic 10.0%
!!! AAGAGATTTTTTTTTTTTTA+AGG + chr6_3:43551852-43551871 None:intergenic 10.0%
!!! ATCATTTTACATTATTTTTA+AGG - chr6_3:43553914-43553933 Msa0951710:intron 10.0%
!!! TTATTTACATTTTAATTTTG+AGG - chr6_3:43554464-43554483 Msa0951710:intron 10.0%
!!! ATTTTTTTTTTTTTTAGAAG+AGG + chr6_3:43554884-43554903 None:intergenic 10.0%
!!! TTTTTTCCATTAAAAATTAT+TGG - chr6_3:43554939-43554958 Msa0951710:intron 10.0%
!!! TTTTTCCATTAAAAATTATT+GGG - chr6_3:43554940-43554959 Msa0951710:intron 10.0%
!!! TTTGAATATTTACATTTTTT+TGG - chr6_3:43555101-43555120 Msa0951710:intron 10.0%
!! ATGAAAAATAAAATAATACA+AGG + chr6_3:43555581-43555600 None:intergenic 10.0%
!!! ATGAATTTTTTTAGTTTTTT+TGG + chr6_3:43555795-43555814 None:intergenic 10.0%
!! ATAAACATAATACAAAACTT+TGG + chr6_3:43548635-43548654 None:intergenic 15.0%
!! AATAGAATAATGAACATAAA+TGG + chr6_3:43548751-43548770 None:intergenic 15.0%
!! CACAAAAAAAAAAAAATAGT+TGG + chr6_3:43548889-43548908 None:intergenic 15.0%
!!! GTTTTAAAAATATTAAGGTA+TGG + chr6_3:43548990-43549009 None:intergenic 15.0%
!!! CAGTTGTTTTAAAAATATTA+AGG + chr6_3:43548995-43549014 None:intergenic 15.0%
!! TTAGAAAAATATCTAAAAGT+TGG + chr6_3:43549131-43549150 None:intergenic 15.0%
!! AATGATTAAAAGAAAGATAA+TGG - chr6_3:43549709-43549728 Msa0951710:intron 15.0%
!! AATAGTTAATAAGGATAATT+TGG + chr6_3:43549743-43549762 None:intergenic 15.0%
!! AAATTATCCTTATTAACTAT+TGG - chr6_3:43549742-43549761 Msa0951710:intron 15.0%
!!! TAGTTTTAAAAGTAATACTT+TGG - chr6_3:43549766-43549785 Msa0951710:intron 15.0%
!!! TCATTTTGAAACAAATTTTT+TGG - chr6_3:43549868-43549887 Msa0951710:intron 15.0%
!!! CATTTTGAAACAAATTTTTT+GGG - chr6_3:43549869-43549888 Msa0951710:intron 15.0%
!!! ATTTTTGGGTAATAATAATA+TGG + chr6_3:43550112-43550131 None:intergenic 15.0%
!! AAATATTATAAAGTTGTCTT+GGG + chr6_3:43550161-43550180 None:intergenic 15.0%
!! TAAATATTATAAAGTTGTCT+TGG + chr6_3:43550162-43550181 None:intergenic 15.0%
!! ATTAATTTACTGGTAATATA+AGG - chr6_3:43550208-43550227 Msa0951710:CDS 15.0%
!!! GTAATATAAGGATATATTTT+TGG - chr6_3:43550220-43550239 Msa0951710:CDS 15.0%
!!! TATATTTTTGGAAAATTCTA+TGG - chr6_3:43550232-43550251 Msa0951710:intron 15.0%
!!! TGTTTAATTTTGATTTAATC+AGG + chr6_3:43550396-43550415 None:intergenic 15.0%
!!! TTTAGGTTTTATTATGATTT+GGG + chr6_3:43550777-43550796 None:intergenic 15.0%
!!! ATTTAGGTTTTATTATGATT+TGG + chr6_3:43550778-43550797 None:intergenic 15.0%
!! AGTTTATGTTAAAATTCATA+TGG + chr6_3:43550882-43550901 None:intergenic 15.0%
!!! AAGTAATTAATATTTTGTAC+AGG - chr6_3:43551134-43551153 Msa0951710:intron 15.0%
!!! AGTAATTAATATTTTGTACA+GGG - chr6_3:43551135-43551154 Msa0951710:intron 15.0%
!! TTCATAACCTAATTTAATTA+AGG - chr6_3:43551355-43551374 Msa0951710:intron 15.0%
!! TCATAACCTAATTTAATTAA+GGG - chr6_3:43551356-43551375 Msa0951710:intron 15.0%
!! ATATATCCCTTAATTAAATT+AGG + chr6_3:43551365-43551384 None:intergenic 15.0%
!!! TCATATTTTTAAATACAAAC+TGG + chr6_3:43551892-43551911 None:intergenic 15.0%
!!! GATTTTTTTTTTTTAAGGAA+AGG + chr6_3:43551999-43552018 None:intergenic 15.0%
!!! CAAGAGATTTTTTTTTTTTA+AGG + chr6_3:43552004-43552023 None:intergenic 15.0%
!!! ATTCTAATTTTAAAGTTTCT+TGG - chr6_3:43552970-43552989 Msa0951710:intron 15.0%
!! AAATACTAACAATTACATTT+AGG - chr6_3:43553120-43553139 Msa0951710:intron 15.0%
!! AATACTAACAATTACATTTA+GGG - chr6_3:43553121-43553140 Msa0951710:intron 15.0%
!!! TTTAATGTTATTTCAATATG+AGG + chr6_3:43553585-43553604 None:intergenic 15.0%
!! TATATATGTCATGTATATAT+TGG + chr6_3:43553609-43553628 None:intergenic 15.0%
!! TCAGTTATAAAATAAGAAAA+TGG - chr6_3:43553671-43553690 Msa0951710:intron 15.0%
!! CAGTTATAAAATAAGAAAAT+GGG - chr6_3:43553672-43553691 Msa0951710:intron 15.0%
!!! ATTTATTGATAAAAAAGTGT+AGG + chr6_3:43554014-43554033 None:intergenic 15.0%
!! TGAACATTGAAAAAATTATA+TGG + chr6_3:43554093-43554112 None:intergenic 15.0%
!! TTAACATAAACACTTAATAT+AGG + chr6_3:43554695-43554714 None:intergenic 15.0%
!! CATAATTCATCTTTATAAAA+TGG - chr6_3:43554715-43554734 Msa0951710:intron 15.0%
!!! ACTCTTTATAAACTATTTTT+AGG - chr6_3:43554759-43554778 Msa0951710:intron 15.0%
!!! TTTTCCATTAAAAATTATTG+GGG - chr6_3:43554941-43554960 Msa0951710:intron 15.0%
!!! AACAATTTTTAATAGATAAG+TGG + chr6_3:43555073-43555092 None:intergenic 15.0%
!! GATATAATATAATATATGCA+GGG - chr6_3:43555399-43555418 Msa0951710:intron 15.0%
!! ATATAATATAATATATGCAG+GGG - chr6_3:43555400-43555419 Msa0951710:intron 15.0%
!! AAGTGAATAATTGAAAAATA+CGG + chr6_3:43555738-43555757 None:intergenic 15.0%
!! TTTAAATTAAAACAAGTTGT+AGG + chr6_3:43555908-43555927 None:intergenic 15.0%
!!! AGTTTTGTATTATGTTTATG+TGG - chr6_3:43548636-43548655 Msa0951710:CDS 20.0%
!!! GTTTTGTATTATGTTTATGT+GGG - chr6_3:43548637-43548656 Msa0951710:CDS 20.0%
!!! AAAATTCTTGAAGCAATTTT+AGG - chr6_3:43549097-43549116 Msa0951710:intron 20.0%
!!! TTTTAGTTATGTGTTATTCT+TGG - chr6_3:43549287-43549306 Msa0951710:intron 20.0%
!! AAACTAACCAATAGTTAATA+AGG + chr6_3:43549752-43549771 None:intergenic 20.0%
!! AGAAAAAGTTATTATTGCAT+TGG - chr6_3:43549829-43549848 Msa0951710:intron 20.0%
!! TATTATTACCCAAAAATTCT+TGG - chr6_3:43550115-43550134 Msa0951710:intron 20.0%
!! ATTATTACCCAAAAATTCTT+GGG - chr6_3:43550116-43550135 Msa0951710:intron 20.0%
!! TTGCTCAAAAATTAATTTAC+TGG - chr6_3:43550198-43550217 Msa0951710:CDS 20.0%
!! GTTACAATTAAACAAGATAA+AGG + chr6_3:43550460-43550479 None:intergenic 20.0%
!!! TATTTAGGTGAATATTTTTG+TGG + chr6_3:43550698-43550717 None:intergenic 20.0%
!!! TTAGGTTTTATTATGATTTG+GGG + chr6_3:43550776-43550795 None:intergenic 20.0%
!! TGAATATAGTGTTTGAATTT+GGG + chr6_3:43550821-43550840 None:intergenic 20.0%
!! ATGAATATAGTGTTTGAATT+TGG + chr6_3:43550822-43550841 None:intergenic 20.0%
!!! AGTAAAATTTAGTCTTACAA+TGG - chr6_3:43551173-43551192 Msa0951710:intron 20.0%
!! AACATACATTAAAATATAGG+TGG + chr6_3:43551302-43551321 None:intergenic 20.0%
!! AGGAACATACATTAAAATAT+AGG + chr6_3:43551305-43551324 None:intergenic 20.0%
!!! GTCTATGTTTTTAAAATTGA+AGG - chr6_3:43551389-43551408 Msa0951710:intron 20.0%
!!! TTGAAGGTTAAATATGTTTT+TGG - chr6_3:43551405-43551424 Msa0951710:intron 20.0%
!!! AAATTTTCAATCACTACTTT+TGG - chr6_3:43551497-43551516 Msa0951710:intron 20.0%
!!! TTGTTATTAACAAATGTTAC+TGG + chr6_3:43552043-43552062 None:intergenic 20.0%
!! TCATATGTAAAATTTCAGTT+TGG - chr6_3:43552082-43552101 Msa0951710:CDS 20.0%
!!! TTGTTTTTACTCATACAAAA+TGG - chr6_3:43552409-43552428 Msa0951710:CDS 20.0%
!! TTATACTTACCAAATTGAAT+AGG + chr6_3:43552716-43552735 None:intergenic 20.0%
!! ATTCAATACAAAAGTAACAT+TGG + chr6_3:43552783-43552802 None:intergenic 20.0%
!! AATGATTTGACAATTATGAT+TGG - chr6_3:43552900-43552919 Msa0951710:intron 20.0%
!! GACTATAAGTTAAACTAATT+AGG - chr6_3:43553096-43553115 Msa0951710:intron 20.0%
!! TAGATTGACAATAAATTCTA+AGG + chr6_3:43553408-43553427 None:intergenic 20.0%
!!! TTCTTATTTTATAACTGAGT+TGG + chr6_3:43553669-43553688 None:intergenic 20.0%
!! CTCAACTAAAAAATTATAGA+AGG + chr6_3:43553785-43553804 None:intergenic 20.0%
!!! TTTACATTTTAATTTTGAGG+AGG - chr6_3:43554467-43554486 Msa0951710:intron 20.0%
!!! TCTTATCTCTTTTCAATATA+TGG - chr6_3:43554910-43554929 Msa0951710:intron 20.0%
!! GGATATAATATAATATATGC+AGG - chr6_3:43555398-43555417 Msa0951710:intron 20.0%
!! TACTTAACCAAAAAAAAATG+TGG - chr6_3:43555487-43555506 Msa0951710:intron 20.0%
!! TAATTCAAAGACTAAATTGA+TGG + chr6_3:43555607-43555626 None:intergenic 20.0%
!! ATATCAATTGAGTTATAATC+AGG + chr6_3:43555680-43555699 None:intergenic 20.0%
!!! TTGAAAGCATATGATTTTAT+AGG - chr6_3:43555837-43555856 Msa0951710:intron 20.0%
!!! TGAAAGCATATGATTTTATA+GGG - chr6_3:43555838-43555857 Msa0951710:intron 20.0%
!! GTATTTCATAGTGTAATTTA+TGG - chr6_3:43556057-43556076 Msa0951710:intron 20.0%
!!! CTTCTTTGTTTATTGATAAT+AGG - chr6_3:43556289-43556308 Msa0951710:CDS 20.0%
!!! TTTTACACCATTAGATTAAT+AGG + chr6_3:43556427-43556446 None:intergenic 20.0%
!! ATATTAGTCTGAAAAACTTG+TGG - chr6_3:43548297-43548316 Msa0951710:three_prime_UTR 25.0%
! TACTTCAGAAAATGATTACT+TGG - chr6_3:43548369-43548388 Msa0951710:three_prime_UTR 25.0%
! ATTGAACTAACTAGACTTAT+GGG + chr6_3:43549232-43549251 None:intergenic 25.0%
!!! AACATTGAAGAGATTTTTTG+AGG + chr6_3:43549426-43549445 None:intergenic 25.0%
! CATAATGTGTATGAAGAAAA+CGG - chr6_3:43550069-43550088 Msa0951710:intron 25.0%
! ATGGGAAGAAAAAAAGATAA+AGG + chr6_3:43550491-43550510 None:intergenic 25.0%
! GGAAGATAAATGACTAAAAT+GGG + chr6_3:43550509-43550528 None:intergenic 25.0%
! AGGAAGATAAATGACTAAAA+TGG + chr6_3:43550510-43550529 None:intergenic 25.0%
!! ATCAATTTGAAGGTGTATTT+AGG + chr6_3:43550713-43550732 None:intergenic 25.0%
! AGGATATTCTATCAATTTGA+AGG + chr6_3:43550723-43550742 None:intergenic 25.0%
!! TTTGAGTTTAAGGAAAAAGA+TGG + chr6_3:43550751-43550770 None:intergenic 25.0%
!!! TTTCTGGGATTGTTAAATTT+AGG + chr6_3:43550794-43550813 None:intergenic 25.0%
! GAATATAGTGTTTGAATTTG+GGG + chr6_3:43550820-43550839 None:intergenic 25.0%
! TTTATGAGTGTGGTAAATTT+AGG - chr6_3:43550950-43550969 Msa0951710:intron 25.0%
! TTATGAGTGTGGTAAATTTA+GGG - chr6_3:43550951-43550970 Msa0951710:intron 25.0%
!! ATTTAGGGTTTATTGAGATT+TGG - chr6_3:43550966-43550985 Msa0951710:intron 25.0%
!! TTTAGGGTTTATTGAGATTT+GGG - chr6_3:43550967-43550986 Msa0951710:intron 25.0%
! TAAAATATAGGTGGTTTCTA+TGG + chr6_3:43551293-43551312 None:intergenic 25.0%
!!! AGTACACAATTTTTTTTGAG+AGG + chr6_3:43551325-43551344 None:intergenic 25.0%
! TACAAACTGGTTAATTGTTT+AGG + chr6_3:43551879-43551898 None:intergenic 25.0%
!! ATGTTACTGGTTAATTGTTT+AGG + chr6_3:43552030-43552049 None:intergenic 25.0%
!! ATGGATATTTTCTATTGCAT+TGG - chr6_3:43552504-43552523 Msa0951710:CDS 25.0%
!! TTTAAAGTTTCTTGGTTTCT+TGG - chr6_3:43552978-43552997 Msa0951710:intron 25.0%
! GCATTGTTTAAGCAATTTAA+AGG - chr6_3:43553143-43553162 Msa0951710:intron 25.0%
! TTATTGTCAATCTAAGTACT+TGG - chr6_3:43553414-43553433 Msa0951710:intron 25.0%
! ATTATGATGTGTAAATTCAG+TGG + chr6_3:43553983-43554002 None:intergenic 25.0%
!!! AATTTTGAGGAGGTTTTTAT+AGG - chr6_3:43554477-43554496 Msa0951710:intron 25.0%
! TTGGCATGTTATTACATTAT+TGG - chr6_3:43554546-43554565 Msa0951710:intron 25.0%
! GAAACTTCATTCATGATTTA+GGG + chr6_3:43554661-43554680 None:intergenic 25.0%
! AGAAACTTCATTCATGATTT+AGG + chr6_3:43554662-43554681 None:intergenic 25.0%
! ACATTATAGAGTGTAAGTAT+TGG + chr6_3:43554819-43554838 None:intergenic 25.0%
!! CTCTTTTCAATATATGGATT+TGG - chr6_3:43554916-43554935 Msa0951710:intron 25.0%
!! AAGACCCCAATAATTTTTAA+TGG + chr6_3:43554948-43554967 None:intergenic 25.0%
!! TAAGTTGAACATTAATTCCT+TGG + chr6_3:43555185-43555204 None:intergenic 25.0%
! TTAATGTTCAACTTATCTTG+TGG - chr6_3:43555190-43555209 Msa0951710:intron 25.0%
! TCTTACAAATAATGATTGTG+AGG + chr6_3:43555268-43555287 None:intergenic 25.0%
!! AATTAAGTCTATGTTTTCCT+CGG - chr6_3:43555354-43555373 Msa0951710:intron 25.0%
!! GACTAGAAATTCATCTTTTA+TGG + chr6_3:43555460-43555479 None:intergenic 25.0%
!!! GCATATACCACATTTTTTTT+TGG + chr6_3:43555497-43555516 None:intergenic 25.0%
! CATTGCTAGAATAATTAACA+AGG + chr6_3:43555519-43555538 None:intergenic 25.0%
!!! TTTTTGGTCAAGTAACATAA+TGG + chr6_3:43555779-43555798 None:intergenic 25.0%
! AATTTATGGAATATGATTGC+AGG - chr6_3:43556071-43556090 Msa0951710:intron 25.0%
!! TATCATATATGTCCTTTTGA+AGG + chr6_3:43556147-43556166 None:intergenic 25.0%
! AAAAATCTGCAGATTGAAAT+TGG - chr6_3:43556201-43556220 Msa0951710:CDS 25.0%
!! TTGTTTATTGATAATAGGCT+AGG - chr6_3:43556294-43556313 Msa0951710:CDS 25.0%
GTAGAATCTCTAAACTGATA+TGG - chr6_3:43548321-43548340 Msa0951710:three_prime_UTR 30.0%
! AGGATGTTAAACATGTTTTG+TGG - chr6_3:43548407-43548426 Msa0951710:three_prime_UTR 30.0%
CATTGAACTAACTAGACTTA+TGG + chr6_3:43549233-43549252 None:intergenic 30.0%
TATTCTTGGTCTAAAAAGCA+AGG - chr6_3:43549301-43549320 Msa0951710:intron 30.0%
ATTCTTGGTCTAAAAAGCAA+GGG - chr6_3:43549302-43549321 Msa0951710:intron 30.0%
GAGTTGTTTATTCTACTTCT+TGG - chr6_3:43549464-43549483 Msa0951710:intron 30.0%
TTGAATTACTTTGTCATGCA+GGG + chr6_3:43549534-43549553 None:intergenic 30.0%
TTTGAATTACTTTGTCATGC+AGG + chr6_3:43549535-43549554 None:intergenic 30.0%
!! AAACGACACTCATTTTGAAA+CGG + chr6_3:43549660-43549679 None:intergenic 30.0%
! CGTTTTCTTCATACACATTA+TGG + chr6_3:43550071-43550090 None:intergenic 30.0%
TGACACAAATGCATTATGAT+TGG + chr6_3:43550300-43550319 None:intergenic 30.0%
GTATTGTACATTTGCTCATA+CGG - chr6_3:43550336-43550355 Msa0951710:intron 30.0%
TTATCTTCCTTAAAATGCAC+AGG - chr6_3:43550520-43550539 Msa0951710:CDS 30.0%
TAAGGAAAAAGATGGAAGTA+AGG + chr6_3:43550743-43550762 None:intergenic 30.0%
!!! ATTTGGGGATTTTGAGTTTA+AGG + chr6_3:43550761-43550780 None:intergenic 30.0%
! TTGAATTTGGGGATTTTTCT+GGG + chr6_3:43550809-43550828 None:intergenic 30.0%
! TTTGAATTTGGGGATTTTTC+TGG + chr6_3:43550810-43550829 None:intergenic 30.0%
ATTCATATGGTACAGATAGA+AGG + chr6_3:43550869-43550888 None:intergenic 30.0%
TTAGGGTTTATTGAGATTTG+GGG - chr6_3:43550968-43550987 Msa0951710:intron 30.0%
! AATGAACATGTTTCCGATTT+TGG - chr6_3:43551004-43551023 Msa0951710:intron 30.0%
! ATGAACATGTTTCCGATTTT+GGG - chr6_3:43551005-43551024 Msa0951710:intron 30.0%
GTATTTATCTTCAAAGGTCA+TGG - chr6_3:43552170-43552189 Msa0951710:CDS 30.0%
ACCCCAATCTTAAAATTTCT+TGG - chr6_3:43552244-43552263 Msa0951710:CDS 30.0%
!!! GCCAAGAAATTTTAAGATTG+GGG + chr6_3:43552248-43552267 None:intergenic 30.0%
!!! GGCCAAGAAATTTTAAGATT+GGG + chr6_3:43552249-43552268 None:intergenic 30.0%
!!! TGGCCAAGAAATTTTAAGAT+TGG + chr6_3:43552250-43552269 None:intergenic 30.0%
GCTTGAAGAAATTTCTTGAT+GGG + chr6_3:43552352-43552371 None:intergenic 30.0%
TGCTTGAAGAAATTTCTTGA+TGG + chr6_3:43552353-43552372 None:intergenic 30.0%
TCTTCATCAGTGTATTTGAT+TGG - chr6_3:43552443-43552462 Msa0951710:CDS 30.0%
CTTCATCAGTGTATTTGATT+GGG - chr6_3:43552444-43552463 Msa0951710:CDS 30.0%
TTCATCAGTGTATTTGATTG+GGG - chr6_3:43552445-43552464 Msa0951710:CDS 30.0%
! GCATTGGTAATTTATGTCAT+TGG - chr6_3:43552520-43552539 Msa0951710:CDS 30.0%
TGGTAATTTATGTCATTGGT+TGG - chr6_3:43552524-43552543 Msa0951710:CDS 30.0%
GAATTTACAATGCTAAGTCT+TGG - chr6_3:43552598-43552617 Msa0951710:CDS 30.0%
!!! TGCTTTTAGTCTTAATGTTC+AGG - chr6_3:43553024-43553043 Msa0951710:intron 30.0%
!!! GCTTTTAGTCTTAATGTTCA+GGG - chr6_3:43553025-43553044 Msa0951710:intron 30.0%
!!! TAGGGCACTTTTTAAAGTAA+TGG - chr6_3:43553258-43553277 Msa0951710:intron 30.0%
TTTAAGCAATTTCAAAGTGC+TGG - chr6_3:43553333-43553352 Msa0951710:intron 30.0%
! TCGTTTTGCTGATATGAAAT+TGG - chr6_3:43553537-43553556 Msa0951710:intron 30.0%
GTTAAAATCACGAGTTAACA+TGG + chr6_3:43553837-43553856 None:intergenic 30.0%
! ATGTATCATATCCACACTTT+TGG + chr6_3:43554296-43554315 None:intergenic 30.0%
AGTGAATTAGCATACTTTCT+TGG - chr6_3:43554322-43554341 Msa0951710:intron 30.0%
ATACTTTCTTGGTATAACCA+TGG - chr6_3:43554333-43554352 Msa0951710:intron 30.0%
AGTGTTTCACAAACTATATC+AGG - chr6_3:43554364-43554383 Msa0951710:intron 30.0%
TATCAGGTAATTACTTTGCT+TGG - chr6_3:43554380-43554399 Msa0951710:intron 30.0%
! TATGGTTGGTTACATAAACT+TGG - chr6_3:43554527-43554546 Msa0951710:intron 30.0%
! GGTTTTACCTCTATTCAATA+TGG - chr6_3:43554780-43554799 Msa0951710:intron 30.0%
TCAAGTTCCATATTGAATAG+AGG + chr6_3:43554790-43554809 None:intergenic 30.0%
! ACTTTTAGTGAAGTAAAGTG+AGG + chr6_3:43555029-43555048 None:intergenic 30.0%
TCACTTTACTTCACTAAAAG+TGG - chr6_3:43555028-43555047 Msa0951710:intron 30.0%
CATTGTAACATTACTTTGCT+TGG - chr6_3:43555152-43555171 Msa0951710:intron 30.0%
TCATTATTTGTAAGACCAAC+TGG - chr6_3:43555273-43555292 Msa0951710:intron 30.0%
ATCAAACATAATTACCTCCT+TGG + chr6_3:43555300-43555319 None:intergenic 30.0%
! TCTTTTATGGTGAACAAGTA+GGG + chr6_3:43555447-43555466 None:intergenic 30.0%
! ATCTTTTATGGTGAACAAGT+AGG + chr6_3:43555448-43555467 None:intergenic 30.0%
AAAGATGATCTTGGTATCAT+AGG + chr6_3:43555554-43555573 None:intergenic 30.0%
AACAAGTAACAACCTTCAAA+AGG - chr6_3:43556132-43556151 Msa0951710:intron 30.0%
GATGAGACCTATTAATCTAA+TGG - chr6_3:43556417-43556436 Msa0951710:five_prime_UTR 30.0%
! GTAAAGCTTTTGATCAGCAA+TGG + chr6_3:43548352-43548371 None:intergenic 35.0%
CTTGGAAGTGAAAAGTTTGA+AGG - chr6_3:43548387-43548406 Msa0951710:three_prime_UTR 35.0%
! TAAACATGTTTTGTGGAGTG+AGG - chr6_3:43548414-43548433 Msa0951710:three_prime_UTR 35.0%
! TGGAAGTTGAAGTGTTTGTA+AGG + chr6_3:43548495-43548514 None:intergenic 35.0%
! AAGCATGGGTACTTCTAAAA+TGG - chr6_3:43548667-43548686 Msa0951710:intron 35.0%
! AAATGGTGAAGTACCTGTAA+AGG - chr6_3:43548684-43548703 Msa0951710:intron 35.0%
GAAACTATACAAGTCTCGAA+TGG + chr6_3:43549180-43549199 None:intergenic 35.0%
GTCTAGTTAGTTCAATGTAG+AGG - chr6_3:43549236-43549255 Msa0951710:intron 35.0%
AACAAGAGTAGAACTGTAGA+AGG - chr6_3:43549263-43549282 Msa0951710:intron 35.0%
ACAAGAGTAGAACTGTAGAA+GGG - chr6_3:43549264-43549283 Msa0951710:intron 35.0%
CTAAAAAGCAAGGGAATTAG+TGG - chr6_3:43549311-43549330 Msa0951710:intron 35.0%
GTAAACTAATAGTGACACCA+AGG - chr6_3:43549373-43549392 Msa0951710:intron 35.0%
! AGTTAGGATGTCTTTTTCCT+TGG + chr6_3:43549393-43549412 None:intergenic 35.0%
TTGGTCAGATAAGAAGTGAA+AGG - chr6_3:43549483-43549502 Msa0951710:intron 35.0%
TGAATTACTTTGTCATGCAG+GGG + chr6_3:43549533-43549552 None:intergenic 35.0%
CATTAGGCAATTGTGTTTCA+CGG - chr6_3:43549605-43549624 Msa0951710:intron 35.0%
! GTAGTGTGCAGAGTATTAAT+TGG - chr6_3:43549791-43549810 Msa0951710:intron 35.0%
! TGTGCAGAGTATTAATTGGA+GGG - chr6_3:43549795-43549814 Msa0951710:intron 35.0%
!! AAGCGACACTCATTTTGAAA+CGG - chr6_3:43549859-43549878 Msa0951710:intron 35.0%
AGTGATACATAGATCACCTT+AGG - chr6_3:43549933-43549952 Msa0951710:intron 35.0%
!!! GAGTTTTTTTGTGTGTGTGA+GGG + chr6_3:43550011-43550030 None:intergenic 35.0%
!!! TGAGTTTTTTTGTGTGTGTG+AGG + chr6_3:43550012-43550031 None:intergenic 35.0%
ACATTATGGACCACTTTCAT+AGG + chr6_3:43550057-43550076 None:intergenic 35.0%
! CAGATTGCCCAAGAATTTTT+GGG + chr6_3:43550126-43550145 None:intergenic 35.0%
TATCACAATGCTTAGACCAT+TGG - chr6_3:43550906-43550925 Msa0951710:intron 35.0%
CTTCATCTTCTTCCCAAAAT+CGG + chr6_3:43551020-43551039 None:intergenic 35.0%
GTCAACTAATGTCTTTGTGA+AGG + chr6_3:43551200-43551219 None:intergenic 35.0%
GACATCAAGAACTATGCTAT+TGG - chr6_3:43551222-43551241 Msa0951710:intron 35.0%
GACTAAAAGTGAACTGATCT+TGG - chr6_3:43551788-43551807 Msa0951710:intron 35.0%
GACTAAAAGTGAACTGATCT+TGG - chr6_3:43551788-43551807 Msa0951710:intron 35.0%
! GTGCTGGTATTTATCTTCAA+AGG - chr6_3:43552164-43552183 Msa0951710:CDS 35.0%
GGGGTTGCATATATATGAAT+AGG + chr6_3:43552229-43552248 None:intergenic 35.0%
!! GATCAGCTATTTCTTGTTCT+TGG + chr6_3:43552270-43552289 None:intergenic 35.0%
ATAGCAAAGGAAAACATGCA+GGG + chr6_3:43552322-43552341 None:intergenic 35.0%
GATGGGTAAAATGATAGCAA+AGG + chr6_3:43552335-43552354 None:intergenic 35.0%
GTATTTGATTGGGGAATGAT+AGG - chr6_3:43552454-43552473 Msa0951710:CDS 35.0%
ATTGTCTTGGATGGCATTTA+GGG - chr6_3:43552567-43552586 Msa0951710:CDS 35.0%
GATGGCATTTAGGGAATTAT+GGG - chr6_3:43552576-43552595 Msa0951710:CDS 35.0%
GTTTGCATTATTCTTCTTGC+TGG - chr6_3:43552658-43552677 Msa0951710:intron 35.0%
CTCTTGGTTCCTATTCAATT+TGG - chr6_3:43552704-43552723 Msa0951710:intron 35.0%
TTAATTCACATGTACACCGT+CGG + chr6_3:43552950-43552969 None:intergenic 35.0%
!! TTAGTCTTAATGTTCAGGGT+TGG - chr6_3:43553029-43553048 Msa0951710:intron 35.0%
TTGGAGTAAGTACAGCATTA+AGG - chr6_3:43553068-43553087 Msa0951710:intron 35.0%
TGTCAATCTAAGTACTTGGT+TGG - chr6_3:43553418-43553437 Msa0951710:intron 35.0%
ATGGGCATGAACAAAATCAA+AGG - chr6_3:43553690-43553709 Msa0951710:intron 35.0%
GATGAATTGAGTCTCAAGTA+AGG + chr6_3:43553862-43553881 None:intergenic 35.0%
! TTTTTGTCTTATGGCATGAG+GGG + chr6_3:43553954-43553973 None:intergenic 35.0%
! GTTTTTGTCTTATGGCATGA+GGG + chr6_3:43553955-43553974 None:intergenic 35.0%
! AGTTTTTGTCTTATGGCATG+AGG + chr6_3:43553956-43553975 None:intergenic 35.0%
! TGGCAAGAGTTTTTGTCTTA+TGG + chr6_3:43553963-43553982 None:intergenic 35.0%
AATGAGTATTTGGATGCTCT+TGG + chr6_3:43554184-43554203 None:intergenic 35.0%
AGCATCCAAATACTCATTCT+TGG - chr6_3:43554186-43554205 Msa0951710:intron 35.0%
ATCCAAATACTCATTCTTGG+TGG - chr6_3:43554189-43554208 Msa0951710:intron 35.0%
! CACACTTTTGGTAAAGATGA+TGG + chr6_3:43554284-43554303 None:intergenic 35.0%
CATCATCTTTACCAAAAGTG+TGG - chr6_3:43554282-43554301 Msa0951710:intron 35.0%
! GTTTTTATAGGTGTGGTCAT+TGG - chr6_3:43554489-43554508 Msa0951710:intron 35.0%
AACCCAGGTAAATTGCAATT+GGG + chr6_3:43554575-43554594 None:intergenic 35.0%
AAACCCAGGTAAATTGCAAT+TGG + chr6_3:43554576-43554595 None:intergenic 35.0%
ACTTCATTCATGATTTAGGG+AGG + chr6_3:43554658-43554677 None:intergenic 35.0%
ACTTCACTAAAAGTGGTTTC+TGG - chr6_3:43555035-43555054 Msa0951710:intron 35.0%
TTCAACTTATCTTGTGGCTT+AGG - chr6_3:43555196-43555215 Msa0951710:intron 35.0%
TCAACTTATCTTGTGGCTTA+GGG - chr6_3:43555197-43555216 Msa0951710:intron 35.0%
! TTAGGTTAGCTCGGTTATTA+GGG - chr6_3:43555377-43555396 Msa0951710:intron 35.0%
GGTGTCCAACGTTTAAATTT+CGG + chr6_3:43555426-43555445 None:intergenic 35.0%
CAAGGTCTAAAAGATGATCT+TGG + chr6_3:43555563-43555582 None:intergenic 35.0%
ATATGAACATTGCGATATGC+AGG - chr6_3:43555696-43555715 Msa0951710:intron 35.0%
AGGGTATACATCCCTTAATT+TGG - chr6_3:43556256-43556275 Msa0951710:CDS 35.0%
!! ATAGGCTAGGACTAGTTATA+TGG - chr6_3:43556307-43556326 Msa0951710:CDS 35.0%
AGCTCATTATGCTACAATTC+TGG - chr6_3:43556474-43556493 Msa0951710:five_prime_UTR 35.0%
ACTTCAACTTCCATCTATGC+TGG - chr6_3:43548502-43548521 Msa0951710:three_prime_UTR 40.0%
CAATTGCATCTATTCCTTGC+TGG - chr6_3:43548576-43548595 Msa0951710:three_prime_UTR 40.0%
AAGATGCAAACTAACCAGCA+AGG + chr6_3:43548593-43548612 None:intergenic 40.0%
GTACAGGTAAGTACCTTTAC+AGG + chr6_3:43548700-43548719 None:intergenic 40.0%
ACAAGTATTCTACGCGTACT+CGG + chr6_3:43548722-43548741 None:intergenic 40.0%
AAAGCAAGGGAATTAGTGGA+AGG - chr6_3:43549315-43549334 Msa0951710:intron 40.0%
ATTGCCTAATGTGATGACAC+TGG + chr6_3:43549596-43549615 None:intergenic 40.0%
GAGGGAGTAATATCTATTGG+TGG + chr6_3:43549638-43549657 None:intergenic 40.0%
ACGGAGGGAGTAATATCTAT+TGG + chr6_3:43549641-43549660 None:intergenic 40.0%
!!! GACACTCATTTTGAAACGGA+GGG + chr6_3:43549899-43549918 None:intergenic 40.0%
! GTGTGCAGAGTATTAATTGG+AGG - chr6_3:43549794-43549813 Msa0951710:intron 40.0%
!!! GACACTCATTTTGAAACGGA+TGG - chr6_3:43549899-43549918 Msa0951710:intron 40.0%
GATACATAGATCACCTTAGG+TGG - chr6_3:43549936-43549955 Msa0951710:intron 40.0%
CACATGTCATAGTTGTGTGT+GGG + chr6_3:43549979-43549998 None:intergenic 40.0%
ACACATGTCATAGTTGTGTG+TGG + chr6_3:43549980-43549999 None:intergenic 40.0%
AACTATGACATGTGTCCATG+TGG - chr6_3:43549985-43550004 Msa0951710:intron 40.0%
! GCAGATTGCCCAAGAATTTT+TGG + chr6_3:43550127-43550146 None:intergenic 40.0%
! GGATTGACCTGTGCATTTTA+AGG + chr6_3:43550530-43550549 None:intergenic 40.0%
TTCATCACGTTGTTCCTGAT+TGG - chr6_3:43550837-43550856 Msa0951710:intron 40.0%
TCATCACGTTGTTCCTGATT+GGG - chr6_3:43550838-43550857 Msa0951710:intron 40.0%
ATAGAAGGTTCAACCCAATC+AGG + chr6_3:43550854-43550873 None:intergenic 40.0%
TGCTTAGACCATTGGTCAAT+TGG - chr6_3:43550914-43550933 Msa0951710:intron 40.0%
GCTTAGACCATTGGTCAATT+GGG - chr6_3:43550915-43550934 Msa0951710:intron 40.0%
CTTAGACCATTGGTCAATTG+GGG - chr6_3:43550916-43550935 Msa0951710:intron 40.0%
TTAGACCATTGGTCAATTGG+GGG - chr6_3:43550917-43550936 Msa0951710:intron 40.0%
ATTGTCTTGCACCATAAGCT+TGG + chr6_3:43552138-43552157 None:intergenic 40.0%
GCAAGACAATTTCAAAGTGC+TGG - chr6_3:43552148-43552167 Msa0951710:CDS 40.0%
CAAGAAATAGCTGATCTAGC+TGG - chr6_3:43552274-43552293 Msa0951710:CDS 40.0%
GATAGCAAAGGAAAACATGC+AGG + chr6_3:43552323-43552342 None:intergenic 40.0%
GGGAATGATAGGTTTAGCAA+TGG - chr6_3:43552465-43552484 Msa0951710:CDS 40.0%
GCAATGGCAAGTAATATCTC+AGG - chr6_3:43552481-43552500 Msa0951710:CDS 40.0%
TGGCAAGTAATATCTCAGGA+TGG - chr6_3:43552485-43552504 Msa0951710:CDS 40.0%
CAATCCATTCCATCCTTCTT+TGG + chr6_3:43552551-43552570 None:intergenic 40.0%
!! AAGGATGGAATGGATTGTCT+TGG - chr6_3:43552554-43552573 Msa0951710:CDS 40.0%
!! ATGGAATGGATTGTCTTGGA+TGG - chr6_3:43552558-43552577 Msa0951710:CDS 40.0%
GATTGTCTTGGATGGCATTT+AGG - chr6_3:43552566-43552585 Msa0951710:CDS 40.0%
GGATGGCATTTAGGGAATTA+TGG - chr6_3:43552575-43552594 Msa0951710:CDS 40.0%
ATGCTAAGTCTTGGTTCATC+TGG - chr6_3:43552607-43552626 Msa0951710:CDS 40.0%
! TTGGTTCATCTGGAATGATC+TGG - chr6_3:43552617-43552636 Msa0951710:CDS 40.0%
GAATGATCTGGTTAGAACAG+TGG - chr6_3:43552629-43552648 Msa0951710:CDS 40.0%
ATCTGGTTAGAACAGTGGTA+TGG - chr6_3:43552634-43552653 Msa0951710:intron 40.0%
GAGCAATCACAGGATTATCA+AGG + chr6_3:43552687-43552706 None:intergenic 40.0%
GATAATCCTGTGATTGCTCT+TGG - chr6_3:43552688-43552707 Msa0951710:intron 40.0%
CGGTGTAGAGATTATTGACA+CGG + chr6_3:43552930-43552949 None:intergenic 40.0%
GTCAATAATCTCTACACCGA+CGG - chr6_3:43552931-43552950 Msa0951710:intron 40.0%
TGCCACCAAGAATGAGTATT+TGG + chr6_3:43554194-43554213 None:intergenic 40.0%
ATGTCTCAGTCTCTTCTCAT+TGG - chr6_3:43554214-43554233 Msa0951710:intron 40.0%
TGAAACACTGTTGAGAACCA+TGG + chr6_3:43554353-43554372 None:intergenic 40.0%
! TGAGGAGGTTTTTATAGGTG+TGG - chr6_3:43554482-43554501 Msa0951710:intron 40.0%
ACTCCCAATTGCAATTTACC+TGG - chr6_3:43554569-43554588 Msa0951710:intron 40.0%
CTCCCAATTGCAATTTACCT+GGG - chr6_3:43554570-43554589 Msa0951710:intron 40.0%
TGGGTTTCAACCAGCATTTA+GGG - chr6_3:43554589-43554608 Msa0951710:intron 40.0%
! AGTCTATGTTTTCCTCGGTT+AGG - chr6_3:43555359-43555378 Msa0951710:intron 40.0%
! GTTAGGTTAGCTCGGTTATT+AGG - chr6_3:43555376-43555395 Msa0951710:intron 40.0%
! CATCCCTTAATTTGGCTAGT+TGG - chr6_3:43556264-43556283 Msa0951710:CDS 40.0%
GAGCCAACTAGCCAAATTAA+GGG + chr6_3:43556270-43556289 None:intergenic 40.0%
AGAGCCAACTAGCCAAATTA+AGG + chr6_3:43556271-43556290 None:intergenic 40.0%
GGAGTGAGGCAATGAAGATA+TGG - chr6_3:43548428-43548447 Msa0951710:three_prime_UTR 45.0%
ATGGAAGATAGCACTTCCAG+TGG - chr6_3:43548447-43548466 Msa0951710:three_prime_UTR 45.0%
AACAGTGAACACAAAGCCAC+TGG + chr6_3:43548466-43548485 None:intergenic 45.0%
TCCATCTATGCTGGTCATCT+TGG - chr6_3:43548511-43548530 Msa0951710:three_prime_UTR 45.0%
TCCAAGATGACCAGCATAGA+TGG + chr6_3:43548515-43548534 None:intergenic 45.0%
!! TATGTGGGAGCTTTGAAGCA+TGG - chr6_3:43548652-43548671 Msa0951710:intron 45.0%
!! ATGTGGGAGCTTTGAAGCAT+GGG - chr6_3:43548653-43548672 Msa0951710:intron 45.0%
GAGTACGCGTAGAATACTTG+TGG - chr6_3:43548721-43548740 Msa0951710:intron 45.0%
! TTGAGGATGTCGACTGAGTT+AGG + chr6_3:43549409-43549428 None:intergenic 45.0%
TGCATTACACGACAACAGTG+AGG - chr6_3:43549562-43549581 Msa0951710:intron 45.0%
ATTACACGACAACAGTGAGG+TGG - chr6_3:43549565-43549584 Msa0951710:intron 45.0%
!!! CGACACTCATTTTGAAACGG+AGG + chr6_3:43549898-43549917 None:intergenic 45.0%
CACACACTCTCCTATGAAAG+TGG - chr6_3:43550044-43550063 Msa0951710:intron 45.0%
TAGACCATTGGTCAATTGGG+GGG - chr6_3:43550918-43550937 Msa0951710:intron 45.0%
ACTGCACTAGCAACACTTTG+TGG - chr6_3:43552112-43552131 Msa0951710:CDS 45.0%
ACACTTTGTGGCCAAGCTTA+TGG - chr6_3:43552124-43552143 Msa0951710:CDS 45.0%
AGGCAAGAGTAGTATGCATG+TGG + chr6_3:43552209-43552228 None:intergenic 45.0%
! GTCATTGGTTGGTCCAAAGA+AGG - chr6_3:43552535-43552554 Msa0951710:CDS 45.0%
! TTGGTTGGTCCAAAGAAGGA+TGG - chr6_3:43552539-43552558 Msa0951710:CDS 45.0%
TGGTCCAAAGAAGGATGGAA+TGG - chr6_3:43552544-43552563 Msa0951710:CDS 45.0%
TAGGAACCAAGAGCAATCAC+AGG + chr6_3:43552697-43552716 None:intergenic 45.0%
ACTTACTCCAAGAAGCAGCA+TGG + chr6_3:43553059-43553078 None:intergenic 45.0%
TCGAGTTCATGCAAGACACA+TGG + chr6_3:43553482-43553501 None:intergenic 45.0%
CTTGCATGAACTCGAGACAA+AGG - chr6_3:43553487-43553506 Msa0951710:intron 45.0%
GTTGAGTATACCTAGACTCG+TGG - chr6_3:43553799-43553818 Msa0951710:intron 45.0%
GTTCGTGTCTCTCATACACT+TGG - chr6_3:43554148-43554167 Msa0951710:intron 45.0%
ATAGGTGTGGTCATTGGATG+TGG - chr6_3:43554495-43554514 Msa0951710:intron 45.0%
TGGATGTGGATGGCAAGTTA+TGG - chr6_3:43554509-43554528 Msa0951710:intron 45.0%
TGTGGATGGCAAGTTATGGT+TGG - chr6_3:43554513-43554532 Msa0951710:intron 45.0%
! CTAAATGCTGGTTGAAACCC+AGG + chr6_3:43554590-43554609 None:intergenic 45.0%
CTGGGTTTCAACCAGCATTT+AGG - chr6_3:43554588-43554607 Msa0951710:intron 45.0%
GGGTTTCAACCAGCATTTAG+GGG - chr6_3:43554590-43554609 Msa0951710:intron 45.0%
ATACCTTGACCCCTAAATGC+TGG + chr6_3:43554602-43554621 None:intergenic 45.0%
ATCTTGTGGCTTAGGGTCTT+TGG - chr6_3:43555204-43555223 Msa0951710:intron 45.0%
TCTTGTGGCTTAGGGTCTTT+GGG - chr6_3:43555205-43555224 Msa0951710:intron 45.0%
TTGTAAGACCAACTGGACCA+AGG - chr6_3:43555280-43555299 Msa0951710:intron 45.0%
AATTACCTCCTTGGTCCAGT+TGG + chr6_3:43555291-43555310 None:intergenic 45.0%
! TTTCCTCGGTTAGGTTAGCT+CGG - chr6_3:43555368-43555387 Msa0951710:intron 45.0%
AGGGGCCGAAATTTAAACGT+TGG - chr6_3:43555418-43555437 Msa0951710:intron 45.0%
ACATTGCGATATGCAGGAGA+TGG - chr6_3:43555702-43555721 Msa0951710:intron 45.0%
CATTGCGATATGCAGGAGAT+GGG - chr6_3:43555703-43555722 Msa0951710:intron 45.0%
ATTGCGATATGCAGGAGATG+GGG - chr6_3:43555704-43555723 Msa0951710:intron 45.0%
CAGCAAATCGCATGCAAATC+TGG - chr6_3:43556103-43556122 Msa0951710:intron 45.0%
!!! TTTTGTTATTATTATTTTTT+AGG - chr6_3:43550417-43550436 Msa0951710:CDS 5.0%
!!! ATTAATTTTTATATTTTTGA+TGG + chr6_3:43551644-43551663 None:intergenic 5.0%
!! AAAAATTAATATTTAATTCA+TGG - chr6_3:43551654-43551673 Msa0951710:intron 5.0%
!!! AAAAAATTCTAATATTTTTT+TGG - chr6_3:43551683-43551702 Msa0951710:intron 5.0%
!! CTAAAAAAAAAAAAAATATT+AGG - chr6_3:43554887-43554906 Msa0951710:intron 5.0%
!!! TTTTTAAAAAAATAAAAAGA+GGG + chr6_3:43555637-43555656 None:intergenic 5.0%
!!! TTTTTTAAAAAAATAAAAAG+AGG + chr6_3:43555638-43555657 None:intergenic 5.0%
!! AAAATTCATTATAATTTAAT+AGG - chr6_3:43555806-43555825 Msa0951710:intron 5.0%
!! ATATATGATATTAATTTATA+AGG - chr6_3:43556236-43556255 Msa0951710:CDS 5.0%
!! TATATGATATTAATTTATAA+GGG - chr6_3:43556237-43556256 Msa0951710:CDS 5.0%
ATTCTACGCGTACTCGGTAC+AGG + chr6_3:43548716-43548735 None:intergenic 50.0%
ACCTACGCAACACAGTGTTG+AGG - chr6_3:43549022-43549041 Msa0951710:intron 50.0%
TCCTCAACACTGTGTTGCGT+AGG + chr6_3:43549026-43549045 None:intergenic 50.0%
! ACGCAACACAGTGTTGAGGA+AGG - chr6_3:43549026-43549045 Msa0951710:intron 50.0%
! ACACAGTGTTGAGGAAGGCA+CGG - chr6_3:43549031-43549050 Msa0951710:intron 50.0%
ACTTTGTCATGCAGGGGCTT+TGG + chr6_3:43549527-43549546 None:intergenic 50.0%
GGGACCAGTGTCATCACATT+AGG - chr6_3:43549589-43549608 Msa0951710:intron 50.0%
CAAGTGGTACATGCCACCTA+AGG + chr6_3:43549952-43549971 None:intergenic 50.0%
GTTGTGTGTGGGTGTACAAG+TGG + chr6_3:43549968-43549987 None:intergenic 50.0%
TTCTTGGGCAATCTGCTGCT+CGG - chr6_3:43550131-43550150 Msa0951710:intron 50.0%
AGACCATTGGTCAATTGGGG+GGG - chr6_3:43550919-43550938 Msa0951710:intron 50.0%
! TGGAACTCCATGCTGCTTCT+TGG - chr6_3:43553049-43553068 Msa0951710:intron 50.0%
TCGTACGATTCCACGAGTCT+AGG + chr6_3:43553812-43553831 None:intergenic 50.0%
GTGTGGTCATTGGATGTGGA+TGG - chr6_3:43554499-43554518 Msa0951710:intron 50.0%
CAACCAGCATTTAGGGGTCA+AGG - chr6_3:43554596-43554615 Msa0951710:intron 50.0%
CTTTGCTTGGCAATCGACCA+AGG - chr6_3:43555165-43555184 Msa0951710:intron 50.0%
TAAGACCAACTGGACCAAGG+AGG - chr6_3:43555283-43555302 Msa0951710:intron 50.0%
TAACCGAGCTAACCTAACCG+AGG + chr6_3:43555374-43555393 None:intergenic 50.0%
! TTGAGGAAGGCACGGTGTTG+AGG - chr6_3:43549039-43549058 Msa0951710:intron 55.0%
ACACGACAACAGTGAGGTGG+AGG - chr6_3:43549568-43549587 Msa0951710:intron 55.0%
CACGACAACAGTGAGGTGGA+GGG - chr6_3:43549569-43549588 Msa0951710:intron 55.0%
TTGTGTGTGTGAGGGCCACA+TGG + chr6_3:43550003-43550022 None:intergenic 55.0%
GACCATTGGTCAATTGGGGG+GGG - chr6_3:43550920-43550939 Msa0951710:intron 55.0%
ACCATTGGTCAATTGGGGGG+GGG - chr6_3:43550921-43550940 Msa0951710:intron 55.0%
!! GGGGGAGGTGTTTATGAGTG+TGG - chr6_3:43550940-43550959 Msa0951710:intron 55.0%
! GGAAGGCACGGTGTTGAGGA+AGG - chr6_3:43549043-43549062 Msa0951710:intron 60.0%
CCATTGGTCAATTGGGGGGG+GGG - chr6_3:43550922-43550941 Msa0951710:intron 60.0%
GTGGCTTAGGGTCTTTGGGC+AGG - chr6_3:43555209-43555228 Msa0951710:intron 60.0%
CCCCCCCCCCAATTGACCAA+TGG + chr6_3:43550925-43550944 None:intergenic 65.0%
TTGGTCAATTGGGGGGGGGG+AGG - chr6_3:43550925-43550944 Msa0951710:intron 65.0%
Chromosome Type Strat End Strand Name
chr6_3 gene 43548242 43556507 43548242 ID=Msa0951710;Name=Msa0951710
chr6_3 mRNA 43548242 43556507 43548242 ID=Msa0951710-mRNA-1;Parent=Msa0951710;Name=Msa0951710-mRNA-1;_AED=0.08;_eAED=0.08;_QI=98|0.5|1|1|1|1|5|367|429
chr6_3 exon 43548242 43548656 43548242 ID=Msa0951710-mRNA-1:exon:10010;Parent=Msa0951710-mRNA-1
chr6_3 exon 43550132 43550250 43550132 ID=Msa0951710-mRNA-1:exon:10009;Parent=Msa0951710-mRNA-1
chr6_3 exon 43550364 43550602 43550364 ID=Msa0951710-mRNA-1:exon:10008;Parent=Msa0951710-mRNA-1
chr6_3 exon 43552024 43552649 43552024 ID=Msa0951710-mRNA-1:exon:10007;Parent=Msa0951710-mRNA-1
chr6_3 exon 43556152 43556507 43556152 ID=Msa0951710-mRNA-1:exon:10006;Parent=Msa0951710-mRNA-1
chr6_3 five_prime_UTR 43556410 43556507 43556410 ID=Msa0951710-mRNA-1:five_prime_utr;Parent=Msa0951710-mRNA-1
chr6_3 CDS 43556152 43556409 43556152 ID=Msa0951710-mRNA-1:cds;Parent=Msa0951710-mRNA-1
chr6_3 CDS 43552024 43552649 43552024 ID=Msa0951710-mRNA-1:cds;Parent=Msa0951710-mRNA-1
chr6_3 CDS 43550364 43550602 43550364 ID=Msa0951710-mRNA-1:cds;Parent=Msa0951710-mRNA-1
chr6_3 CDS 43550132 43550250 43550132 ID=Msa0951710-mRNA-1:cds;Parent=Msa0951710-mRNA-1
chr6_3 CDS 43548609 43548656 43548609 ID=Msa0951710-mRNA-1:cds;Parent=Msa0951710-mRNA-1
chr6_3 three_prime_UTR 43548242 43548608 43548242 ID=Msa0951710-mRNA-1:three_prime_utr;Parent=Msa0951710-mRNA-1
Gene Sequence

>Msa0951710

ATGGAAACACCATTGCTGATCAAAAGCTTTACTTCAGAAAATGATTACTTGGAAGTGAAAAGTTTGAAGGATGTTAAACATGTTTTGTGGAGTGAGGCAATGAAGATATGGAAGATAGCACTTCCAGTGGCTTTGTGTTCACTGTTTCAGTACCTTACAAACACTTCAACTTCCATCTATGCTGGTCATCTTGGAGACATTGAGCTTTCTTCTTTCTCTCTTTTTCAAAGTATCATCAATTGCATCTATTCCTTGCTGTTTGGTATGTCAACTGCACTAGCAACACTTTGTGGCCAAGCTTATGGTGCAAGACAATTTCAAAGTGCTGGTATTTATCTTCAAAGGTCATGGATTATACTCTTCACCACATGCATACTACTCTTGCCTATTCATATATATGCAACCCCAATCTTAAAATTTCTTGGCCAAGAACAAGAAATAGCTGATCTAGCTGGCAAATATGCAATTCAAATAATTCCCTGCATGTTTTCCTTTGCTATCATTTTACCCATCAAGAAATTTCTTCAAGCACAATGCAAAGTTAATGTTATTATGTGCTTATCACTATTGTTTTTACTCATACAAAATGGTTTACTTTACATCTTCATCAGTGTATTTGATTGGGGAATGATAGGTTTAGCAATGGCAAGTAATATCTCAGGATGGATATTTTCTATTGCATTGGTAATTTATGTCATTGGTTGGTCCAAAGAAGGATGGAATGGATTGTCTTGGATGGCATTTAGGGAATTATGGGAATTTACAATGCTAAGTCTTGGTTCATCTGGAATGATCTGGTTAGAACAGTGGTATGGTGTTTGCATTATTCTTCTTGCTGGTCACCTTGATAATCCTGTGATTGCTCTTGGTTCCTATTCAATTTGTGTTCGTGTCTCTCATACACTTGGAATGTCGCATCCAAGAGCATCCAAATACTCATTCTTGGTGGCAATGTCTCAGTCTCTTCTCATTGGAATCATTTTCATGACTGTTATTTTCTTGAGTAAACAAGAATTTGCCATCATCTTTACCAAAAGTGTGGATATGATACATGCTGCTAGTGAATTAGCATACTTTCTTGGTATAACCATGGTTCTCAACAGTGTTTCACAAACTATATCAGGTGTGGTCATTGGATGTGGATGGCAAGTTATGGTTGGTTACATAAACTTGGCATGTTATTACATTATTGGACTCCCAATTGCAATTTACCTGGGTTTCAACCAGCATTTAGGGGTCAAGGTAGAGCAAACAGCAAATCGCATGCAAATCTGGATCTCTAACAAGTAA

Protein sequence

>Msa0951710

METPLLIKSFTSENDYLEVKSLKDVKHVLWSEAMKIWKIALPVALCSLFQYLTNTSTSIYAGHLGDIELSSFSLFQSIINCIYSLLFGMSTALATLCGQAYGARQFQSAGIYLQRSWIILFTTCILLLPIHIYATPILKFLGQEQEIADLAGKYAIQIIPCMFSFAIILPIKKFLQAQCKVNVIMCLSLLFLLIQNGLLYIFISVFDWGMIGLAMASNISGWIFSIALVIYVIGWSKEGWNGLSWMAFRELWEFTMLSLGSSGMIWLEQWYGVCIILLAGHLDNPVIALGSYSICVRVSHTLGMSHPRASKYSFLVAMSQSLLIGIIFMTVIFLSKQEFAIIFTKSVDMIHAASELAYFLGITMVLNSVSQTISGVVIGCGWQVMVGYINLACYYIIGLPIAIYLGFNQHLGVKVEQTANRMQIWISNK*