AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0208520


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0208520 MtrunA17_Chr2g0307341 89.362 517 53 2 31 545 4 520 0.0 878
Msa0208520 MtrunA17_Chr5g0422391 30.921 456 250 9 1 394 1 453 3.39e-42 162
Msa0208520 MtrunA17_Chr1g0198861 31.214 346 199 6 83 394 127 467 2.01e-32 133
Msa0208520 MtrunA17_Chr2g0330791 23.098 368 222 13 66 394 113 458 1.50e-14 76.6
Msa0208520 MtrunA17_Chr8g0340991 22.630 327 233 5 88 394 144 470 3.45e-14 75.5
Msa0208520 MtrunA17_Chr1g0151531 40.426 94 51 1 221 309 207 300 2.07e-11 67.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0208520 AT3G25690.1 28.021 571 300 13 1 475 1 556 1.75e-42 164
Msa0208520 AT3G25690.2 28.021 571 300 13 1 475 1 556 1.75e-42 164
Msa0208520 AT3G25690.6 28.021 571 300 13 1 475 1 556 1.75e-42 164
Msa0208520 AT3G25690.4 28.021 571 300 13 1 475 1 556 1.75e-42 164
Msa0208520 AT3G25690.5 30.617 454 264 9 61 475 117 558 2.36e-41 160
Msa0208520 AT3G25690.3 29.973 367 214 8 148 475 53 415 1.40e-30 127
Msa0208520 AT1G52080.2 27.157 313 213 6 77 382 133 437 1.16e-15 80.5
Msa0208520 AT1G52080.1 27.157 313 213 6 77 382 133 437 1.16e-15 80.5

Find 72 sgRNAs with CRISPR-Local

Find 147 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACTTATTTCTTCTTGTATC+TGG 0.168939 2_1:+44124667 None:intergenic
AATTGAAGGTTGTGAAAATA+TGG 0.214823 2_1:-44125913 Msa0208520:CDS
CAATTCTTTGCCTGAAATCT+TGG 0.241386 2_1:+44124473 None:intergenic
AGATAGAGCATTACAAGTTT+TGG 0.250398 2_1:-44125478 Msa0208520:CDS
CAAGACTGCACCAAGATTTC+AGG 0.256053 2_1:-44124483 Msa0208520:CDS
TGATCCTGAAATATGCTAAA+AGG 0.287094 2_1:+44123779 None:intergenic
GGTTTCTCTAGATTCATAAA+TGG 0.289507 2_1:+44124135 None:intergenic
ATTTGCTCATTTCATCATAT+TGG 0.313570 2_1:+44123950 None:intergenic
TTTCAATTTATTAAGCAAAC+TGG 0.324262 2_1:+44124305 None:intergenic
AGCATATGAAAAGCCATCTT+TGG 0.325337 2_1:+44124559 None:intergenic
GAACTAATTCACTTGTTTGC+TGG 0.328676 2_1:-44126535 Msa0208520:five_prime_UTR
ATTCAATAAGTTTCCTTTCA+AGG 0.329852 2_1:+44125826 None:intergenic
AAATTGGTTATTCAGATGAT+AGG 0.356532 2_1:-44123852 Msa0208520:CDS
GAGAAACAAAGAGCTTGAAT+TGG 0.372240 2_1:-44125445 Msa0208520:CDS
TTCCCAACTGAAAATGCAAT+TGG 0.384279 2_1:-44125772 Msa0208520:CDS
GATTCCTCTTCAGAGAATAA+AGG 0.398628 2_1:-44123892 Msa0208520:CDS
GAGAGTGTCTTTCAGTGATT+CGG 0.399568 2_1:-44124097 Msa0208520:CDS
ATTGAATTGCCACAAATTGA+AGG 0.402982 2_1:-44125927 Msa0208520:CDS
AGCAATAGCAAGGATCAAAT+TGG 0.431409 2_1:-44123868 Msa0208520:CDS
TGCTTAATAAATTGAAAAGA+TGG 0.437093 2_1:-44124299 Msa0208520:CDS
GACACTCTCTTCAATCTTGT+CGG 0.446002 2_1:+44124111 None:intergenic
TGAAGCTCATCACTTAGTAT+TGG 0.457504 2_1:+44126626 None:intergenic
GAATTCAACTATTACATGCT+TGG 0.460309 2_1:-44123998 Msa0208520:CDS
AAGAAACAATTGCTTCCCTT+CGG 0.476707 2_1:-44125719 Msa0208520:CDS
TATGGATTATATCACTGAAA+AGG 0.480155 2_1:-44125895 Msa0208520:CDS
CGTATCAGTCCAGGTCTGCT+TGG 0.483600 2_1:+44124225 None:intergenic
ATACTAGCAGCTGCACCAGC+AGG 0.486466 2_1:+44123821 None:intergenic
GAAAGTAAGAAGAATATGAA+TGG 0.490265 2_1:-44125606 Msa0208520:CDS
GCTACCTTTATTCTCTGAAG+AGG 0.492468 2_1:+44123888 None:intergenic
CTTGGAGTTGAAGAAACAAA+AGG 0.497843 2_1:-44123980 Msa0208520:CDS
TTATGCTAGTGATGTAATAC+AGG 0.499721 2_1:-44126065 Msa0208520:intron
GACTACTAGAAGAACTTTCG+AGG 0.501559 2_1:+44124349 None:intergenic
ATGCTAAAAGGACTAACAAA+AGG 0.505098 2_1:+44123791 None:intergenic
GCTCATCACTTAGTATTGGT+TGG 0.522372 2_1:+44126630 None:intergenic
AGAGCTTGAATTGGAAAAGA+GGG 0.523110 2_1:-44125436 Msa0208520:CDS
GACGAATTAGCGAAGTATAA+CGG 0.524430 2_1:-44125540 Msa0208520:CDS
GGAAATAGACCAAGCAGACC+TGG 0.525005 2_1:-44124234 Msa0208520:CDS
AACGAGAAGAATTTGCGAAA+GGG 0.527885 2_1:-44124258 Msa0208520:CDS
GTATAACGGTGCTACTGCTA+TGG 0.531287 2_1:-44125526 Msa0208520:CDS
AAGAGCTTGAATTGGAAAAG+AGG 0.534837 2_1:-44125437 Msa0208520:CDS
AAGAGCTTGTGTACCAAAGA+TGG 0.535326 2_1:-44124572 Msa0208520:CDS
TGTCTCTTCGAATGCTACAT+TGG 0.540927 2_1:-44124400 Msa0208520:CDS
AAGCCAAGGAAAAGTTGTGC+TGG 0.541224 2_1:-44124165 Msa0208520:CDS
CTTGGTGCAGTCTTGTCTTG+TGG 0.545917 2_1:+44124491 None:intergenic
CTTAATATAATATAAACAAA+GGG 0.553082 2_1:+44123746 None:intergenic
GAATTGGAAAAGAGGGAAGT+AGG 0.556434 2_1:-44125429 Msa0208520:CDS
AATACAAAATTACAAGCAGA+GGG 0.556657 2_1:-44125856 Msa0208520:CDS
ACTTAATATAATATAAACAA+AGG 0.563754 2_1:+44123745 None:intergenic
AAATAAAATTATAAATGAGA+TGG 0.564223 2_1:-44125628 Msa0208520:CDS
AACCGTTTGGTAAAATCTCA+AGG 0.567264 2_1:-44126438 Msa0208520:intron
CAACGAGAAGAATTTGCGAA+AGG 0.571169 2_1:-44124259 Msa0208520:CDS
TAATACAAAATTACAAGCAG+AGG 0.573232 2_1:-44125857 Msa0208520:CDS
TTACTATGAACGAGGTAATG+AGG 0.579284 2_1:-44126569 Msa0208520:five_prime_UTR
AATCAAATCTATCAAAGCCA+AGG 0.579355 2_1:-44124179 Msa0208520:CDS
GAGCAAATCATATGAAAATG+TGG 0.585519 2_1:-44123935 Msa0208520:CDS
TGATAGGATTAAAAGCCTGC+TGG 0.586016 2_1:-44123836 Msa0208520:CDS
GAGAAGAATTTGCGAAAGGG+TGG 0.586396 2_1:-44124255 Msa0208520:CDS
TATTGAATTGAATAGACTGA+AGG 0.588485 2_1:-44125811 Msa0208520:CDS
ACTACTAGAAGAACTTTCGA+GGG 0.589577 2_1:+44124350 None:intergenic
AGAGGGAAATAAGCCTTGAA+AGG 0.591640 2_1:-44125839 Msa0208520:CDS
GAATAAAGGTAGCAATAGCA+AGG 0.591883 2_1:-44123878 Msa0208520:CDS
ACTCTCTTCAATCTTGTCGG+TGG 0.595803 2_1:+44124114 None:intergenic
GAAAACCTACGTATCAGTCC+AGG 0.605209 2_1:+44124216 None:intergenic
TCAACATCTGATCGTTGACA+TGG 0.605955 2_1:+44125580 None:intergenic
GCAGACCTGGACTGATACGT+AGG 0.622599 2_1:-44124221 Msa0208520:CDS
TGTTATGCAAGAAGAAGTTG+AGG 0.632417 2_1:-44124055 Msa0208520:CDS
AACAAGTTGAAATATTGCAG+AGG 0.646640 2_1:-44124614 Msa0208520:CDS
TTGTTCTATTACTATGAACG+AGG 0.654006 2_1:-44126577 Msa0208520:five_prime_UTR
ACTAGAAGAACTTTCGAGGG+TGG 0.654936 2_1:+44124353 None:intergenic
GCAGAGGAACAGATTTGACA+TGG 0.661003 2_1:-44124598 Msa0208520:CDS
ACTAGCAAGAAACAAATCAG+AGG 0.695668 2_1:-44125388 Msa0208520:intron
CCAAGGAAAAGTTGTGCTGG+TGG 0.704338 2_1:-44124162 Msa0208520:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTATTTATTTATTTTTAATT+TGG - chr2_1:44123995-44124014 Msa0208520:CDS 0.0%
!! AAATAAAATTATAAATGAGA+TGG - chr2_1:44124697-44124716 Msa0208520:intron 10.0%
!!! ATAATTTTAATAATACAAGA+TGG + chr2_1:44125051-44125070 None:intergenic 10.0%
!!! CTAAATTTTGTTAAAATAAT+AGG - chr2_1:44125509-44125528 Msa0208520:CDS 10.0%
!! CTTAATATAATATAAACAAA+GGG + chr2_1:44126582-44126601 None:intergenic 10.0%
!! ACTTAATATAATATAAACAA+AGG + chr2_1:44126583-44126602 None:intergenic 10.0%
!! ATAAATGAATGAAGTAAATA+GGG + chr2_1:44123964-44123983 None:intergenic 15.0%
!! AACAAAAAATAACACATAAA+AGG + chr2_1:44124288-44124307 None:intergenic 15.0%
!!! TAAAGACAAATCAATTTTTT+GGG + chr2_1:44124343-44124362 None:intergenic 15.0%
!!! TTAAAGACAAATCAATTTTT+TGG + chr2_1:44124344-44124363 None:intergenic 15.0%
!! TATTAAAGAAAAAATAGAAG+AGG - chr2_1:44124643-44124662 Msa0208520:CDS 15.0%
!! TATTCTTATGTTCATTAATA+TGG - chr2_1:44125003-44125022 Msa0208520:intron 15.0%
!! ATTCTTATGTTCATTAATAT+GGG - chr2_1:44125004-44125023 Msa0208520:intron 15.0%
!!! AAGTAATGTTGATTAATTAT+AGG + chr2_1:44125470-44125489 None:intergenic 15.0%
!! TACCTTAAATTTATTGTTTA+AGG - chr2_1:44125568-44125587 Msa0208520:CDS 15.0%
!!! TAATAAAAAGCATAATAGAA+AGG - chr2_1:44125811-44125830 Msa0208520:CDS 15.0%
!! CATAAATGAATGAAGTAAAT+AGG + chr2_1:44123965-44123984 None:intergenic 20.0%
!!! GTTTAGTTTCTTTATTAAGT+TGG - chr2_1:44124139-44124158 Msa0208520:CDS 20.0%
!! AATCCTACAAAAAAAATCAT+TGG - chr2_1:44125419-44125438 Msa0208520:CDS 20.0%
!! ATCCTACAAAAAAAATCATT+GGG - chr2_1:44125420-44125439 Msa0208520:CDS 20.0%
!! AATCAACATTACTTAAGTTA+TGG - chr2_1:44125476-44125495 Msa0208520:CDS 20.0%
!! TTGTTAAAATAATAGGTAGT+AGG - chr2_1:44125516-44125535 Msa0208520:CDS 20.0%
!!! AAACAATAAATTTAAGGTAG+AGG + chr2_1:44125567-44125586 None:intergenic 20.0%
!! AGCCTTAAACAATAAATTTA+AGG + chr2_1:44125573-44125592 None:intergenic 20.0%
!! TTTCAATTTATTAAGCAAAC+TGG + chr2_1:44126023-44126042 None:intergenic 20.0%
!! TGCTTAATAAATTGAAAAGA+TGG - chr2_1:44126026-44126045 Msa0208520:intron 20.0%
! AATTAACAGAGGAAAAATGA+TGG + chr2_1:44123915-44123934 None:intergenic 25.0%
! AATTGAAGGTTGTGAAAATA+TGG - chr2_1:44124412-44124431 Msa0208520:CDS 25.0%
!! TATGGATTATATCACTGAAA+AGG - chr2_1:44124430-44124449 Msa0208520:CDS 25.0%
! TAATACAAAATTACAAGCAG+AGG - chr2_1:44124468-44124487 Msa0208520:CDS 25.0%
! AATACAAAATTACAAGCAGA+GGG - chr2_1:44124469-44124488 Msa0208520:CDS 25.0%
! ATTCAATAAGTTTCCTTTCA+AGG + chr2_1:44124502-44124521 None:intergenic 25.0%
! TATTGAATTGAATAGACTGA+AGG - chr2_1:44124514-44124533 Msa0208520:CDS 25.0%
! GAAAGTAAGAAGAATATGAA+TGG - chr2_1:44124719-44124738 Msa0208520:intron 25.0%
! ACATTCAACACTAATCTATT+GGG - chr2_1:44125128-44125147 Msa0208520:intron 25.0%
! ATATAAGAGTTTATCCATTC+GGG + chr2_1:44125182-44125201 None:intergenic 25.0%
! GATATAAGAGTTTATCCATT+CGG + chr2_1:44125183-44125202 None:intergenic 25.0%
! AGAAAAGAGTTTATAAAGAG+TGG + chr2_1:44125282-44125301 None:intergenic 25.0%
!!! TGCTTGATAATTTTTTCTAC+AGG - chr2_1:44125622-44125641 Msa0208520:CDS 25.0%
! ATTTGCTCATTTCATCATAT+TGG + chr2_1:44126378-44126397 None:intergenic 25.0%
! AAATTGGTTATTCAGATGAT+AGG - chr2_1:44126473-44126492 Msa0208520:CDS 25.0%
TTGTTCTATTACTATGAACG+AGG - chr2_1:44123748-44123767 Msa0208520:three_prime_UTR 30.0%
! TACCTTGAGATTTTACCAAA+CGG + chr2_1:44123892-44123911 None:intergenic 30.0%
GAGAAACTATGAATTAACAG+AGG + chr2_1:44123926-44123945 None:intergenic 30.0%
! AAGTGAATAAATGAAGTGTC+TGG - chr2_1:44124053-44124072 Msa0208520:CDS 30.0%
!! TGAACATGATTTTGAGGAAA+TGG - chr2_1:44124224-44124243 Msa0208520:CDS 30.0%
!! GATTTTGAGGAAATGGAAAA+TGG - chr2_1:44124231-44124250 Msa0208520:CDS 30.0%
TTATGCTAGTGATGTAATAC+AGG - chr2_1:44124260-44124279 Msa0208520:CDS 30.0%
ATTGAATTGCCACAAATTGA+AGG - chr2_1:44124398-44124417 Msa0208520:CDS 30.0%
! TTTTCACAACCTTCAATTTG+TGG + chr2_1:44124410-44124429 None:intergenic 30.0%
!! AGATAGAGCATTACAAGTTT+TGG - chr2_1:44124847-44124866 Msa0208520:intron 30.0%
!!! TACAAGTTTTGGAAATGAAG+AGG - chr2_1:44124858-44124877 Msa0208520:intron 30.0%
ATGTTCATTAATATGGGACT+TGG - chr2_1:44125010-44125029 Msa0208520:intron 30.0%
!! AACCTAGTCTGCTTTTAATA+TGG - chr2_1:44125076-44125095 Msa0208520:intron 30.0%
TACCATATTAAAAGCAGACT+AGG + chr2_1:44125081-44125100 None:intergenic 30.0%
!! TCTGCTTTTAATATGGTACT+TGG - chr2_1:44125083-44125102 Msa0208520:intron 30.0%
! GATTAGTGTTGAATGTGAAA+GGG + chr2_1:44125124-44125143 None:intergenic 30.0%
! AGATTAGTGTTGAATGTGAA+AGG + chr2_1:44125125-44125144 None:intergenic 30.0%
CACATTCAACACTAATCTAT+TGG - chr2_1:44125127-44125146 Msa0208520:intron 30.0%
TGCTCACAAAACAATCATAT+TGG + chr2_1:44125342-44125361 None:intergenic 30.0%
AATACAACCAGAAACTATGT+TGG - chr2_1:44125387-44125406 Msa0208520:intron 30.0%
!!! CACCCAATGATTTTTTTTGT+AGG + chr2_1:44125425-44125444 None:intergenic 30.0%
! CACTTATTTCTTCTTGTATC+TGG + chr2_1:44125661-44125680 None:intergenic 30.0%
! AACAAGTTGAAATATTGCAG+AGG - chr2_1:44125711-44125730 Msa0208520:CDS 30.0%
AATCAAATCTATCAAAGCCA+AGG - chr2_1:44126146-44126165 Msa0208520:intron 30.0%
GGTTTCTCTAGATTCATAAA+TGG + chr2_1:44126193-44126212 None:intergenic 30.0%
GAATTCAACTATTACATGCT+TGG - chr2_1:44126327-44126346 Msa0208520:intron 30.0%
GAGCAAATCATATGAAAATG+TGG - chr2_1:44126390-44126409 Msa0208520:intron 30.0%
ATGCTAAAAGGACTAACAAA+AGG + chr2_1:44126537-44126556 None:intergenic 30.0%
! TAGTCCTTTTAGCATATTTC+AGG - chr2_1:44126542-44126561 Msa0208520:five_prime_UTR 30.0%
TGATCCTGAAATATGCTAAA+AGG + chr2_1:44126549-44126568 None:intergenic 30.0%
TGAAGCTCATCACTTAGTAT+TGG + chr2_1:44123702-44123721 None:intergenic 35.0%
TTACTATGAACGAGGTAATG+AGG - chr2_1:44123756-44123775 Msa0208520:exon 35.0%
GAACTAATTCACTTGTTTGC+TGG - chr2_1:44123790-44123809 Msa0208520:CDS 35.0%
AGCTTCAAAAAGAAACCGTT+TGG - chr2_1:44123874-44123893 Msa0208520:CDS 35.0%
AACCGTTTGGTAAAATCTCA+AGG - chr2_1:44123887-44123906 Msa0208520:CDS 35.0%
CATAATATATGCAGGGGTTA+GGG + chr2_1:44124087-44124106 None:intergenic 35.0%
GCATTGCATAATATATGCAG+GGG + chr2_1:44124093-44124112 None:intergenic 35.0%
GGCATTGCATAATATATGCA+GGG + chr2_1:44124094-44124113 None:intergenic 35.0%
! AGACTCTGAACATGATTTTG+AGG - chr2_1:44124218-44124237 Msa0208520:CDS 35.0%
TTCCCAACTGAAAATGCAAT+TGG - chr2_1:44124553-44124572 Msa0208520:CDS 35.0%
! CTCCAATTGCATTTTCAGTT+GGG + chr2_1:44124558-44124577 None:intergenic 35.0%
! TCTCCAATTGCATTTTCAGT+TGG + chr2_1:44124559-44124578 None:intergenic 35.0%
AAGAAACAATTGCTTCCCTT+CGG - chr2_1:44124606-44124625 Msa0208520:CDS 35.0%
!!! AATTTTGGTTTCGAACCGAA+GGG + chr2_1:44124624-44124643 None:intergenic 35.0%
!!! TAATTTTGGTTTCGAACCGA+AGG + chr2_1:44124625-44124644 None:intergenic 35.0%
GACGAATTAGCGAAGTATAA+CGG - chr2_1:44124785-44124804 Msa0208520:intron 35.0%
GAGAAACAAAGAGCTTGAAT+TGG - chr2_1:44124880-44124899 Msa0208520:intron 35.0%
AAGAGCTTGAATTGGAAAAG+AGG - chr2_1:44124888-44124907 Msa0208520:intron 35.0%
AGAGCTTGAATTGGAAAAGA+GGG - chr2_1:44124889-44124908 Msa0208520:intron 35.0%
ACTAGCAAGAAACAAATCAG+AGG - chr2_1:44124937-44124956 Msa0208520:intron 35.0%
! TGTTTTGTGAGCAAAGTGAA+AGG - chr2_1:44125349-44125368 Msa0208520:intron 35.0%
AGCATATGAAAAGCCATCTT+TGG + chr2_1:44125769-44125788 None:intergenic 35.0%
! GATGGCTTTTCATATGCTTA+AGG - chr2_1:44125771-44125790 Msa0208520:CDS 35.0%
CAATTCTTTGCCTGAAATCT+TGG + chr2_1:44125855-44125874 None:intergenic 35.0%
ACTACTAGAAGAACTTTCGA+GGG + chr2_1:44125978-44125997 None:intergenic 35.0%
AACGAGAAGAATTTGCGAAA+GGG - chr2_1:44126067-44126086 Msa0208520:CDS 35.0%
TGTTATGCAAGAAGAAGTTG+AGG - chr2_1:44126270-44126289 Msa0208520:intron 35.0%
CTTGGAGTTGAAGAAACAAA+AGG - chr2_1:44126345-44126364 Msa0208520:intron 35.0%
GATTCCTCTTCAGAGAATAA+AGG - chr2_1:44126433-44126452 Msa0208520:intron 35.0%
GAATAAAGGTAGCAATAGCA+AGG - chr2_1:44126447-44126466 Msa0208520:CDS 35.0%
AGCAATAGCAAGGATCAAAT+TGG - chr2_1:44126457-44126476 Msa0208520:CDS 35.0%
!! GCTCATCACTTAGTATTGGT+TGG + chr2_1:44123698-44123717 None:intergenic 40.0%
GCATAATATATGCAGGGGTT+AGG + chr2_1:44124088-44124107 None:intergenic 40.0%
! GGGCATTGCATAATATATGC+AGG + chr2_1:44124095-44124114 None:intergenic 40.0%
!! TCACTTCTTTTGCTTGCTGA+AGG + chr2_1:44124192-44124211 None:intergenic 40.0%
AGAGGGAAATAAGCCTTGAA+AGG - chr2_1:44124486-44124505 Msa0208520:CDS 40.0%
TCAACATCTGATCGTTGACA+TGG + chr2_1:44124748-44124767 None:intergenic 40.0%
GAATTGGAAAAGAGGGAAGT+AGG - chr2_1:44124896-44124915 Msa0208520:intron 40.0%
ACTGGCACATCTAATCTAGT+CGG + chr2_1:44125258-44125277 None:intergenic 40.0%
GAGTTTATAAAGAGTGGCAC+TGG + chr2_1:44125276-44125295 None:intergenic 40.0%
CCATGAACCAACATAGTTTC+TGG + chr2_1:44125397-44125416 None:intergenic 40.0%
!! CCAGAAACTATGTTGGTTCA+TGG - chr2_1:44125394-44125413 Msa0208520:CDS 40.0%
AAGAGCTTGTGTACCAAAGA+TGG - chr2_1:44125753-44125772 Msa0208520:CDS 40.0%
TGTCTCTTCGAATGCTACAT+TGG - chr2_1:44125925-44125944 Msa0208520:CDS 40.0%
GACTACTAGAAGAACTTTCG+AGG + chr2_1:44125979-44125998 None:intergenic 40.0%
CAACGAGAAGAATTTGCGAA+AGG - chr2_1:44126066-44126085 Msa0208520:CDS 40.0%
! ACGTAGGTTTTCAATGTCGA+TGG - chr2_1:44126120-44126139 Msa0208520:CDS 40.0%
GACACTCTCTTCAATCTTGT+CGG + chr2_1:44126217-44126236 None:intergenic 40.0%
!! GAGAGTGTCTTTCAGTGATT+CGG - chr2_1:44126228-44126247 Msa0208520:intron 40.0%
! GCTACCTTTATTCTCTGAAG+AGG + chr2_1:44126440-44126459 None:intergenic 40.0%
TGATAGGATTAAAAGCCTGC+TGG - chr2_1:44126489-44126508 Msa0208520:CDS 40.0%
CTGTCCTCGTGAACTCAATT+GGG + chr2_1:44124120-44124139 None:intergenic 45.0%
ACTGTCCTCGTGAACTCAAT+TGG + chr2_1:44124121-44124140 None:intergenic 45.0%
!! GTATAACGGTGCTACTGCTA+TGG - chr2_1:44124799-44124818 Msa0208520:intron 45.0%
AATCTATTGGGTTTAGCGCG+TGG - chr2_1:44125140-44125159 Msa0208520:intron 45.0%
! TTAGCGCGTGGTTGATTTCT+TGG - chr2_1:44125152-44125171 Msa0208520:intron 45.0%
GATTTCTTGGATGACCCGAA+TGG - chr2_1:44125165-44125184 Msa0208520:intron 45.0%
GCAGAGGAACAGATTTGACA+TGG - chr2_1:44125727-44125746 Msa0208520:CDS 45.0%
CAAGACTGCACCAAGATTTC+AGG - chr2_1:44125842-44125861 Msa0208520:CDS 45.0%
ACTAGAAGAACTTTCGAGGG+TGG + chr2_1:44125975-44125994 None:intergenic 45.0%
GAGAAGAATTTGCGAAAGGG+TGG - chr2_1:44126070-44126089 Msa0208520:CDS 45.0%
GAAAACCTACGTATCAGTCC+AGG + chr2_1:44126112-44126131 None:intergenic 45.0%
AAGCCAAGGAAAAGTTGTGC+TGG - chr2_1:44126160-44126179 Msa0208520:intron 45.0%
ACTCTCTTCAATCTTGTCGG+TGG + chr2_1:44126214-44126233 None:intergenic 45.0%
!!! TATTTTTTCTTTAATAATTT+TGG + chr2_1:44124639-44124658 None:intergenic 5.0%
CTCGTGAACTCAATTGGGAG+GGG + chr2_1:44124115-44124134 None:intergenic 50.0%
CCTCGTGAACTCAATTGGGA+GGG + chr2_1:44124116-44124135 None:intergenic 50.0%
TCCTCGTGAACTCAATTGGG+AGG + chr2_1:44124117-44124136 None:intergenic 50.0%
! CTTGGTGCAGTCTTGTCTTG+TGG + chr2_1:44125837-44125856 None:intergenic 50.0%
GGAAATAGACCAAGCAGACC+TGG - chr2_1:44126091-44126110 Msa0208520:CDS 50.0%
! CCACCAGCACAACTTTTCCT+TGG + chr2_1:44126166-44126185 None:intergenic 50.0%
CCAAGGAAAAGTTGTGCTGG+TGG - chr2_1:44126163-44126182 Msa0208520:intron 50.0%
CCCTCCCAATTGAGTTCACG+AGG - chr2_1:44124113-44124132 Msa0208520:CDS 55.0%
CGTATCAGTCCAGGTCTGCT+TGG + chr2_1:44126103-44126122 None:intergenic 55.0%
GCAGACCTGGACTGATACGT+AGG - chr2_1:44126104-44126123 Msa0208520:CDS 55.0%
ATACTAGCAGCTGCACCAGC+AGG + chr2_1:44126507-44126526 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 44123682 44126665 44123682 ID=Msa0208520;Name=Msa0208520
chr2_1 mRNA 44123682 44126665 44123682 ID=Msa0208520-mRNA-1;Parent=Msa0208520;Name=Msa0208520-mRNA-1;_AED=0.01;_eAED=0.01;_QI=136|1|1|1|0.66|0.5|4|92|563
chr2_1 exon 44123682 44124703 44123682 ID=Msa0208520-mRNA-1:exon:12913;Parent=Msa0208520-mRNA-1
chr2_1 exon 44125389 44125973 44125389 ID=Msa0208520-mRNA-1:exon:12912;Parent=Msa0208520-mRNA-1
chr2_1 exon 44126066 44126151 44126066 ID=Msa0208520-mRNA-1:exon:12911;Parent=Msa0208520-mRNA-1
chr2_1 exon 44126439 44126665 44126439 ID=Msa0208520-mRNA-1:exon:12910;Parent=Msa0208520-mRNA-1
chr2_1 five_prime_UTR 44126530 44126665 44126530 ID=Msa0208520-mRNA-1:five_prime_utr;Parent=Msa0208520-mRNA-1
chr2_1 CDS 44126439 44126529 44126439 ID=Msa0208520-mRNA-1:cds;Parent=Msa0208520-mRNA-1
chr2_1 CDS 44126066 44126151 44126066 ID=Msa0208520-mRNA-1:cds;Parent=Msa0208520-mRNA-1
chr2_1 CDS 44125389 44125973 44125389 ID=Msa0208520-mRNA-1:cds;Parent=Msa0208520-mRNA-1
chr2_1 CDS 44123774 44124703 44123774 ID=Msa0208520-mRNA-1:cds;Parent=Msa0208520-mRNA-1
chr2_1 three_prime_UTR 44123682 44123773 44123682 ID=Msa0208520-mRNA-1:three_prime_utr;Parent=Msa0208520-mRNA-1
Gene Sequence

>Msa0208520

ATGATTATCAGACTGAGCTTCATCGTTTTAGCTTCAATTGTTGCACTCAAGATTTCAGCTTCAAAAAGAAACCGTTTGGTAAAATCTCAAGCAAGCAAAAGAAGTGATAATTCAGACTCTGAACATGATTTTGAGGAAATGGAAAATGGCATTGCTTATGCTAGTGATGTAATACAGAATGAAGAAAAGAAGAAGATTAAAATTGAATTGCCACAAATTGAAGGTTGTGAAAATATGGATTATATCACTGAAAAGGAGTTGCTGCAGAATTTAATACAAAATTACAAGCAGAGGGAAATAAGCCTTGAAAGGAAACTTATTGAATTGAATAGACTGAAGGAAGAGAAATCAGTCATTTCCCAACTGAAAATGCAATTGGAGAAAAAGAGAGCAAAATTAAAATCTCTTGAAGAAACAATTGCTTCCCTTCGGTTCGAAACCAAAATTATTAAAGAAAAAATAGAAGAGGATATCATGTGTAAAATGCAGTTAGAGATTGCAAATAAAATTATAAATGAGATGGAAAGTAAGAAGAATATGAATGGAAGCCATGTCAACGATCAGATGTTGACGCTTCAACAACGAGTTGACGAATTAGCGAAGTATAACGGTGCTACTGCTATGGTGAATAAGAAACATGAACATGTTGAAGATAGAGCATTACAAGTTTTGGAAATGAAGAGGAGAAACAAAGAGCTTGAATTGGAAAAGAGGGAAGTAGGAACTAAGTTAGCTATTGCACTAGCAAGAAACAAATCAGAGGAAACAAAAGTGATCCAGATACAAGAAGAAATAAGTGATTTACAACATGTTCATGAACAACTTTCAGAACAAGTTGAAATATTGCAGAGGAACAGATTTGACATGGTACAAGAGCTTGTGTACCAAAGATGGCTTTTCATATGCTTAAGGTATGAAGTTAACAATCATAATAAAAAGCATAATAGAAAGGCCACAAGACAAGACTGCACCAAGATTTCAGGCAAAGAATTGTTGTATGATGAGAAAACTCATTCATTCACATCTGATTCTGCACATGACACTGTCTCTTCGAATGCTACATTGGATGATTTTGATGAAATCGAAACTACCACCCTCGAAAGTTCTTCTAGTAGTCAAAGTAACAACAGTAGCAATTCCAGTTTGCTTAATAAATTGAAAAGATGGAAGAAATCAAAAGATTACAACGAGAAGAATTTGCGAAAGGGTGGAAATAGACCAAGCAGACCTGGACTGATACGTAGGTTTTCAATGTCGATGGTTGAATCAAATCTATCAAAGCCAAGGAAAAGTTGTGCTGGTGGTGATCCATTTATGAATCTAGAGAAACCACCGACAAGATTGAAGAGAGTGTCTTTCAGTGATTCGGTTAAAAAATTGACTTATCATGTTATGCAAGAAGAAGTTGAGGATGTAACTGATGAAAATGAAACTAACTCTCAGCTGAATTCAACTATTACATGCTTGGAGTTGAAGAAACAAAAGGAAGAAGACCAATATGATGAAATGAGCAAATCATATGAAAATGTGGTTTGCAACTATGAAAAAGTTGATTCCTCTTCAGAGAATAAAGGTAGCAATAGCAAGGATCAAATTGGTTATTCAGATGATAGGATTAAAAGCCTGCTGGTGCAGCTGCTAGTATATTTTTTCCTTTTGTTAGTCCTTTTAGCATATTTCAGGATCAAATAA

Protein sequence

>Msa0208520

MIIRLSFIVLASIVALKISASKRNRLVKSQASKRSDNSDSEHDFEEMENGIAYASDVIQNEEKKKIKIELPQIEGCENMDYITEKELLQNLIQNYKQREISLERKLIELNRLKEEKSVISQLKMQLEKKRAKLKSLEETIASLRFETKIIKEKIEEDIMCKMQLEIANKIINEMESKKNMNGSHVNDQMLTLQQRVDELAKYNGATAMVNKKHEHVEDRALQVLEMKRRNKELELEKREVGTKLAIALARNKSEETKVIQIQEEISDLQHVHEQLSEQVEILQRNRFDMVQELVYQRWLFICLRYEVNNHNKKHNRKATRQDCTKISGKELLYDEKTHSFTSDSAHDTVSSNATLDDFDEIETTTLESSSSSQSNNSSNSSLLNKLKRWKKSKDYNEKNLRKGGNRPSRPGLIRRFSMSMVESNLSKPRKSCAGGDPFMNLEKPPTRLKRVSFSDSVKKLTYHVMQEEVEDVTDENETNSQLNSTITCLELKKQKEEDQYDEMSKSYENVVCNYEKVDSSSENKGSNSKDQIGYSDDRIKSLLVQLLVYFFLLLVLLAYFRIK*