AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0372670


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0372670 MtrunA17_Chr5g0416481 98.328 299 5 0 1 299 1 299 0.0 606
Msa0372670 MtrunA17_Chr2g0297071 39.560 182 101 3 114 294 135 308 9.66e-34 125
Msa0372670 MtrunA17_Chr1g0204311 75.000 68 17 0 56 123 17 84 3.63e-29 108
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0372670 AT2G02880.1 57.605 309 110 6 1 289 1 308 2.05e-113 330
Msa0372670 AT5G62270.1 37.433 187 112 2 114 299 199 381 5.12e-25 103
Msa0372670 AT5G62270.2 37.433 187 112 2 114 299 199 381 7.54e-25 103

Find 143 sgRNAs with CRISPR-Local

Find 346 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAAAGCTTTGGATCAGTTTA+AGG 0.153210 3_1:-71327793 None:intergenic
TCCTAATGTCATTCATTATA+TGG 0.171102 3_1:-71327858 None:intergenic
TAAGTATATCTTCTTCTCTT+TGG 0.205774 3_1:-71326725 None:intergenic
CTGTGTTGGTGGTGCCAATC+TGG 0.232756 3_1:+71327318 Msa0372670:three_prime_UTR
TTCTATTCTAATTTAACTTC+TGG 0.232921 3_1:-71327516 None:intergenic
CCCTTCCCTCTCTTGGCATT+TGG 0.234727 3_1:-71326984 None:intergenic
GAAACTTGAGGAGGCGAAAT+TGG 0.248773 3_1:+71322937 Msa0372670:CDS
AACTGAAGGAAGCAAGTTTA+AGG 0.257838 3_1:+71327558 Msa0372670:three_prime_UTR
GAAAGGTGGGATTTATAGTT+TGG 0.258551 3_1:+71322844 Msa0372670:CDS
TTAAGGACATCAAATTAAAT+TGG 0.279303 3_1:+71327413 Msa0372670:three_prime_UTR
AAAATATTAAGAAGGATTAT+AGG 0.285810 3_1:+71322867 Msa0372670:CDS
TTAAACTGATCCAAAGCTTT+TGG 0.296668 3_1:+71327795 Msa0372670:three_prime_UTR
AAGTATATCTTCTTCTCTTT+GGG 0.299726 3_1:-71326724 None:intergenic
AAAATCAAGATGGAAATATA+TGG 0.299831 3_1:+71326694 Msa0372670:CDS
TCACATTGTCATTTCCTTCA+TGG 0.302593 3_1:-71327291 None:intergenic
TCCCATGGTGCTCGTGTCTT+TGG 0.306250 3_1:-71322692 None:intergenic
TGTATGAATGCTAGTTAGAT+TGG 0.340226 3_1:+71327472 Msa0372670:three_prime_UTR
GGGGTGTGGTGGTGGTGAAG+GGG 0.343231 3_1:+71322961 Msa0372670:CDS
TGAAACTGTAGGGTACAAAA+TGG 0.347785 3_1:+71327666 Msa0372670:three_prime_UTR
AAACATAAAATTAAGCAGTT+TGG 0.356591 3_1:-71327907 None:intergenic
TTGAAGAGATGAATGAGAAT+TGG 0.357713 3_1:+71322771 Msa0372670:CDS
TCTATTCTAATTTAACTTCT+GGG 0.364297 3_1:-71327515 None:intergenic
ATGTCGCTTTAACACTTAGA+AGG 0.364899 3_1:+71327371 Msa0372670:three_prime_UTR
ATTTGCTCTTAACAGAATCT+TGG 0.365991 3_1:+71327256 Msa0372670:three_prime_UTR
GTGCTCGTGTCTTTGGTGTT+AGG 0.368387 3_1:-71322685 None:intergenic
AAACTTGAGGAGGCGAAATT+GGG 0.372804 3_1:+71322938 Msa0372670:CDS
GAAGTCTTCTCTTCTTTGAA+TGG 0.374215 3_1:-71327050 None:intergenic
AGAAGTTGCATGCTGGGCTT+TGG 0.374544 3_1:+71322900 Msa0372670:CDS
CTTCTCTTCTTTGAATGGTT+GGG 0.374760 3_1:-71327045 None:intergenic
GATTGTTGTTGGGAGTTTGA+TGG 0.387873 3_1:-71322582 None:intergenic
CATTCGTCTTCACCGCTTCG+AGG 0.391057 3_1:-71322626 None:intergenic
TCTTCTCTTCTTTGAATGGT+TGG 0.391343 3_1:-71327046 None:intergenic
GCATGCTGGGCTTTGGAGTA+AGG 0.392569 3_1:+71322907 Msa0372670:CDS
TGTAGGGTACAAAATGGATT+TGG 0.397122 3_1:+71327672 Msa0372670:three_prime_UTR
AATTGGAATGAGAGGAGAAA+AGG 0.398586 3_1:+71322788 Msa0372670:CDS
AATTGCGTATAGCAAATTTC+AGG 0.398978 3_1:+71326767 Msa0372670:CDS
TTCTTTGAATGGTTGGGTAG+AGG 0.407560 3_1:-71327039 None:intergenic
AAAGCTTTGGATCAGTTTAA+GGG 0.411256 3_1:-71327792 None:intergenic
GAAAATATTGCTGCCCAGAT+TGG 0.426421 3_1:-71327332 None:intergenic
TGGGTGAGGATTTCAAGCTT+TGG 0.430185 3_1:-71327838 None:intergenic
TCTTAACAGAATCTTGGTTA+AGG 0.437011 3_1:+71327262 Msa0372670:three_prime_UTR
TCTTTGAATGGTTGGGTAGA+GGG 0.440125 3_1:-71327038 None:intergenic
ATGTATTTCCACCCATCAAT+TGG 0.442948 3_1:-71326945 None:intergenic
AATGTATTAGGCAAATGCTT+TGG 0.443655 3_1:+71327767 Msa0372670:three_prime_UTR
CCCATATAATGAATGACATT+AGG 0.444766 3_1:+71327857 Msa0372670:three_prime_UTR
CCTAATGTCATTCATTATAT+GGG 0.446129 3_1:-71327857 None:intergenic
CGTTGTTCAGATCATTATTG+TGG 0.449866 3_1:-71326614 None:intergenic
GTGAGGATGACCAAAAGCTT+TGG 0.451099 3_1:-71327805 None:intergenic
ATTGGAATGAGAGGAGAAAA+GGG 0.452091 3_1:+71322789 Msa0372670:CDS
GATATTGTTTCCCACCCATC+AGG 0.452510 3_1:-71326669 None:intergenic
AACACTGCCCTTCCCTCTCT+TGG 0.455080 3_1:-71326991 None:intergenic
AGAAACAGAAGTTGCATGCT+GGG 0.463426 3_1:+71322894 Msa0372670:CDS
AGAAGAAGATATACTTATGC+AGG 0.469115 3_1:+71326731 Msa0372670:CDS
AAGAAACAGAAGTTGCATGC+TGG 0.474225 3_1:+71322893 Msa0372670:CDS
TGGAGAAGAGTGATTTGAAT+TGG 0.476363 3_1:-71322559 None:intergenic
GTGAGGATTTCAAGCTTTGG+AGG 0.476965 3_1:-71327835 None:intergenic
TGTGTTGGTGGTGCCAATCT+GGG 0.478282 3_1:+71327319 Msa0372670:three_prime_UTR
TAGTTTGGAAAATATTAAGA+AGG 0.479941 3_1:+71322859 Msa0372670:CDS
GAGAATTGACGGATTGTTGT+TGG 0.486189 3_1:-71322593 None:intergenic
AGCCGGAGGAGGCCAATTGA+TGG 0.487719 3_1:+71326933 Msa0372670:CDS
AGAATTGACGGATTGTTGTT+GGG 0.488814 3_1:-71322592 None:intergenic
TGAATGAGAATTGGAATGAG+AGG 0.489738 3_1:+71322780 Msa0372670:CDS
GTCTTTGGTGTTAGGTCTTG+TGG 0.490061 3_1:-71322677 None:intergenic
GAAATACATGATTGAGGTGG+TGG 0.492359 3_1:+71326959 Msa0372670:CDS
TTCGGAAGAAGTGGCGGACG+CGG 0.493653 3_1:+71322733 Msa0372670:CDS
GTTGTTCAGATCATTATTGT+GGG 0.496230 3_1:-71326613 None:intergenic
CCCCTTGGTAGGAGATAGCC+TGG 0.496275 3_1:+71327092 Msa0372670:exon
GAGGAGAAAAGGGTTGAAGA+AGG 0.496899 3_1:+71322799 Msa0372670:CDS
CAACTTTGCCGAGGTGTGAC+CGG 0.499946 3_1:+71327205 Msa0372670:three_prime_UTR
AGGAGGAGAATGTGAAAGGT+GGG 0.500011 3_1:+71322831 Msa0372670:CDS
TGTTGTTGGGAGTTTGATGG+TGG 0.501232 3_1:-71322579 None:intergenic
GTTGAAGAAGGAGAAGGTTG+AGG 0.502124 3_1:+71322811 Msa0372670:CDS
ACCCATCAATTGGCCTCCTC+CGG 0.503862 3_1:-71326935 None:intergenic
TCAAGACACACATATTTAGC+CGG 0.505354 3_1:+71326916 Msa0372670:CDS
AAGACGAATGGAACGAAGCA+TGG 0.512484 3_1:+71322639 Msa0372670:CDS
TCTCGCAAAATAGAAACAAA+AGG 0.514282 3_1:+71327172 Msa0372670:three_prime_UTR
GACCAGGCTATCTCCTACCA+AGG 0.517693 3_1:-71327094 None:intergenic
AAATCAAGATGGAAATATAT+GGG 0.521501 3_1:+71326695 Msa0372670:CDS
GCCGGAGGAGGCCAATTGAT+GGG 0.524719 3_1:+71326934 Msa0372670:CDS
GCACTGAGAAAGAAATAGAA+TGG 0.530490 3_1:+71327711 Msa0372670:three_prime_UTR
GAGGAGGAGAATGTGAAAGG+TGG 0.533233 3_1:+71322830 Msa0372670:CDS
GAAGAAGGAGAAGGTTGAGG+AGG 0.538173 3_1:+71322814 Msa0372670:CDS
TGTCATTCATTATATGGGTG+AGG 0.538853 3_1:-71327852 None:intergenic
CTCGAAGCGGTGAAGACGAA+TGG 0.539770 3_1:+71322627 Msa0372670:CDS
AACTTGAGGAGGCGAAATTG+GGG 0.540273 3_1:+71322939 Msa0372670:CDS
TAAGGAGATTGAGAAACTTG+AGG 0.544087 3_1:+71322925 Msa0372670:CDS
CCAAATGCCAAGAGAGGGAA+GGG 0.544767 3_1:+71326984 Msa0372670:CDS
ATTTGGACCTTTGTATGTGT+TGG 0.545443 3_1:+71327689 Msa0372670:three_prime_UTR
GGTTAAGGTTCAAACCATGA+AGG 0.545596 3_1:+71327277 Msa0372670:three_prime_UTR
GCAGTATGTACAGTGAGTTA+AGG 0.545841 3_1:+71327396 Msa0372670:three_prime_UTR
ACCAAAGACACGAGCACCAT+GGG 0.550429 3_1:+71322691 Msa0372670:CDS
TGTTGTTGTGATTCTTCGAA+AGG 0.551025 3_1:-71322522 None:intergenic
AGGAGACGTGAATTTCGCTT+CGG 0.552773 3_1:+71322715 Msa0372670:CDS
TTCAAGCTTTGGAGGGCTAG+AGG 0.554324 3_1:-71327827 None:intergenic
AACGTATCTTCAAGAGGGAA+AGG 0.555056 3_1:+71327630 Msa0372670:three_prime_UTR
GATTGCGAGATGAGAATTGA+CGG 0.555084 3_1:-71322604 None:intergenic
GAATTTCGCTTCGGAAGAAG+TGG 0.555553 3_1:+71322724 Msa0372670:CDS
GATAAGAGTTACATTCCCCT+TGG 0.562876 3_1:+71327077 Msa0372670:CDS
TGAATGACATTAGGATGCAT+AGG 0.569589 3_1:+71327866 Msa0372670:three_prime_UTR
TGAGGATTTCAAGCTTTGGA+GGG 0.571831 3_1:-71327834 None:intergenic
TTTAGATCAAGCACAACTGA+AGG 0.573033 3_1:+71327544 Msa0372670:three_prime_UTR
GTTGAGGAGGAGAATGTGAA+AGG 0.575029 3_1:+71322827 Msa0372670:CDS
CACACATATTTAGCCGGAGG+AGG 0.582454 3_1:+71326922 Msa0372670:CDS
AAAAGGGTTGAAGAAGGAGA+AGG 0.586592 3_1:+71322805 Msa0372670:CDS
AATGTGATGTACTGTGTTGG+TGG 0.588310 3_1:+71327307 Msa0372670:three_prime_UTR
AGAGTTACATTCCCCTTGGT+AGG 0.590750 3_1:+71327081 Msa0372670:CDS
TACTTATGCAGGAATTCGAA+CGG 0.593879 3_1:+71326742 Msa0372670:CDS
AGACGAATGGAACGAAGCAT+GGG 0.595675 3_1:+71322640 Msa0372670:CDS
CTCAGTGCCAACACATACAA+AGG 0.597180 3_1:-71327696 None:intergenic
ACCAGGCTATCTCCTACCAA+GGG 0.602895 3_1:-71327093 None:intergenic
TTGCCGAGGTGTGACCGGAA+TGG 0.607469 3_1:+71327210 Msa0372670:three_prime_UTR
ACCAAATGCCAAGAGAGGGA+AGG 0.608335 3_1:+71326983 Msa0372670:CDS
AAATTCACGTCTCCTTCCCA+TGG 0.608435 3_1:-71322707 None:intergenic
AGTGGCGGACGCGGAGACGA+AGG 0.608660 3_1:+71322742 Msa0372670:CDS
CTTGAGGAGGCGAAATTGGG+GGG 0.616628 3_1:+71322941 Msa0372670:CDS
TGACATAACGTATCTTCAAG+AGG 0.617237 3_1:+71327624 Msa0372670:three_prime_UTR
CTCTGCAGAGGTCATTGCAG+TGG 0.620641 3_1:+71327134 Msa0372670:three_prime_UTR
CACCAAAGACACGAGCACCA+TGG 0.621256 3_1:+71322690 Msa0372670:CDS
AAGACACGAGCACCATGGGA+AGG 0.621580 3_1:+71322695 Msa0372670:CDS
TTTCGCTTCGGAAGAAGTGG+CGG 0.622582 3_1:+71322727 Msa0372670:CDS
ATACATAAAACTACATGACC+AGG 0.626226 3_1:-71327110 None:intergenic
GTTTGGTCTAATCCTAGTGT+CGG 0.629172 3_1:-71327890 None:intergenic
GTGGGACCAAATGCCAAGAG+AGG 0.630227 3_1:+71326978 Msa0372670:CDS
GACATAACGTATCTTCAAGA+GGG 0.631292 3_1:+71327625 Msa0372670:three_prime_UTR
GCTTTGGAGGGCTAGAGGTG+AGG 0.633112 3_1:-71327822 None:intergenic
CTGCCATTCCGGTCACACCT+CGG 0.639459 3_1:-71327213 None:intergenic
GACAATGTGATGTACTGTGT+TGG 0.643437 3_1:+71327304 Msa0372670:three_prime_UTR
ACTTGAGGAGGCGAAATTGG+GGG 0.644793 3_1:+71322940 Msa0372670:CDS
GGATGCATAGGACCGACACT+AGG 0.647618 3_1:+71327878 Msa0372670:three_prime_UTR
GTAGAGGGATCAGAGAGACT+TGG 0.651783 3_1:-71327023 None:intergenic
TTGAGGAGGCGAAATTGGGG+GGG 0.653265 3_1:+71322942 Msa0372670:CDS
TGGGACCAAATGCCAAGAGA+GGG 0.653748 3_1:+71326979 Msa0372670:CDS
TCATCTCGCAATCCTCGAAG+CGG 0.654358 3_1:+71322614 Msa0372670:CDS
GGAATGGCAGCTGAAAATCT+CGG 0.657229 3_1:+71327226 Msa0372670:three_prime_UTR
TGATCACTGCAACTTTGCCG+AGG 0.672315 3_1:+71327196 Msa0372670:three_prime_UTR
GGAGGAGGCCAATTGATGGG+TGG 0.673463 3_1:+71326937 Msa0372670:CDS
AGACACACATATTTAGCCGG+AGG 0.692755 3_1:+71326919 Msa0372670:CDS
GGAGATTGAGAAACTTGAGG+AGG 0.693976 3_1:+71322928 Msa0372670:CDS
AAATACATGATTGAGGTGGT+GGG 0.711165 3_1:+71326960 Msa0372670:CDS
CCAGGCTATCTCCTACCAAG+GGG 0.715022 3_1:-71327092 None:intergenic
ACGAAGCATGGGAATCAGCG+TGG 0.715370 3_1:+71322651 Msa0372670:CDS
GTGGAAATACATGATTGAGG+TGG 0.721823 3_1:+71326956 Msa0372670:CDS
TGGGTGGAAATACATGATTG+AGG 0.745836 3_1:+71326953 Msa0372670:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CTTATTTTTTTTAATGTATT+AGG + chr3_1:71327755-71327774 Msa0372670:three_prime_UTR 10.0%
!! AAAATATTAAGAAGGATTAT+AGG + chr3_1:71322867-71322886 Msa0372670:CDS 15.0%
!! TTAAACTATTTATGCAAATA+TGG + chr3_1:71323671-71323690 Msa0372670:intron 15.0%
!! AATAAGATGCTTATAAAAAT+AGG + chr3_1:71324130-71324149 Msa0372670:intron 15.0%
!! ATAAGATGCTTATAAAAATA+GGG + chr3_1:71324131-71324150 Msa0372670:intron 15.0%
!!! TTAATTACTTTAAGCTTTTA+AGG + chr3_1:71326217-71326236 Msa0372670:intron 15.0%
!! TTTCTAAATATTTCAATTAG+CGG + chr3_1:71326389-71326408 Msa0372670:intron 15.0%
!! AAAACAATATAATGCTTAAT+AGG - chr3_1:71326823-71326842 None:intergenic 15.0%
!!! ATTAAGCATTATATTGTTTT+TGG + chr3_1:71326823-71326842 Msa0372670:intron 15.0%
!! TATAAAGTTATAAATGCTAA+AGG - chr3_1:71326869-71326888 None:intergenic 15.0%
!!! TGTTTTTTTTTTTTTTGTCT+TGG + chr3_1:71327925-71327944 Msa0372670:three_prime_UTR 15.0%
!! TAGTTTGGAAAATATTAAGA+AGG + chr3_1:71322859-71322878 Msa0372670:CDS 20.0%
!!! GTTTTATTTTATGCTTTGTT+TGG + chr3_1:71323049-71323068 Msa0372670:intron 20.0%
!! ACTTATTTAAACTTATCTAC+TGG - chr3_1:71323415-71323434 None:intergenic 20.0%
!! ATCAATCAATTAAGAAACTA+TGG - chr3_1:71323697-71323716 None:intergenic 20.0%
!! ATGACATATTTATAAGTCAT+TGG - chr3_1:71323802-71323821 None:intergenic 20.0%
!!! TAGTGGTTTTAATTTATACT+TGG + chr3_1:71324500-71324519 Msa0372670:intron 20.0%
!!! AGTGGATGAAAATTAAATTT+TGG + chr3_1:71324680-71324699 Msa0372670:intron 20.0%
!!! TTTTTTCACTTTAATGTTGA+AGG + chr3_1:71325252-71325271 Msa0372670:intron 20.0%
!!! TTTGTTTCTTTGAATTTTGT+TGG + chr3_1:71326249-71326268 Msa0372670:intron 20.0%
!! AGATACATTAATATTAAAGC+AGG - chr3_1:71326555-71326574 None:intergenic 20.0%
!! AAAATCAAGATGGAAATATA+TGG + chr3_1:71326694-71326713 Msa0372670:CDS 20.0%
!! AAATCAAGATGGAAATATAT+GGG + chr3_1:71326695-71326714 Msa0372670:CDS 20.0%
!! TTAAGGACATCAAATTAAAT+TGG + chr3_1:71327413-71327432 Msa0372670:three_prime_UTR 20.0%
!!! TCTATTCTAATTTAACTTCT+GGG - chr3_1:71327518-71327537 None:intergenic 20.0%
!!! TTCTATTCTAATTTAACTTC+TGG - chr3_1:71327519-71327538 None:intergenic 20.0%
!! AAACATAAAATTAAGCAGTT+TGG - chr3_1:71327910-71327929 None:intergenic 20.0%
!!! TGCATTTTCTTTTGTTATGA+AGG - chr3_1:71322500-71322519 None:intergenic 25.0%
! TGTGTCAATACTTCATTTAA+AGG - chr3_1:71323082-71323101 None:intergenic 25.0%
!!! GTTGTTTTCATAAGTTATTC+TGG + chr3_1:71323303-71323322 Msa0372670:intron 25.0%
!! GCTGTTTAAGATAGTTTATA+TGG + chr3_1:71323568-71323587 Msa0372670:intron 25.0%
! AAAGTATGATCCAATTTAAG+AGG - chr3_1:71323732-71323751 None:intergenic 25.0%
! TAGCTAATATGGAAACAATT+TGG + chr3_1:71324026-71324045 Msa0372670:intron 25.0%
! GCTTGTATAACAAATACTTA+TGG + chr3_1:71324096-71324115 Msa0372670:intron 25.0%
! ATCAATCAATTAACCAACTA+TGG - chr3_1:71324157-71324176 None:intergenic 25.0%
!!! GCTTAAAATTAAGAGCATTT+AGG - chr3_1:71324341-71324360 None:intergenic 25.0%
! AAATTGAATTCAAAGTGTAG+TGG + chr3_1:71324483-71324502 Msa0372670:intron 25.0%
!! AATCACACACTTGATATTTT+TGG + chr3_1:71324937-71324956 Msa0372670:intron 25.0%
!! TGATGGCATTTAAAATGAAA+AGG - chr3_1:71325414-71325433 None:intergenic 25.0%
! ACCTATCTGTATATATGATA+AGG + chr3_1:71325561-71325580 Msa0372670:intron 25.0%
! ACCTTATCATATATACAGAT+AGG - chr3_1:71325565-71325584 None:intergenic 25.0%
!! TTTTATAACACATCATGTCA+TGG - chr3_1:71325671-71325690 None:intergenic 25.0%
! GTGTTATAAAATATAGACCT+TGG + chr3_1:71325680-71325699 Msa0372670:intron 25.0%
!!! CTCAATTTTAAGGTTAATTC+TGG - chr3_1:71325884-71325903 None:intergenic 25.0%
! CTTAAAATTGAGTCATTACA+GGG + chr3_1:71325892-71325911 Msa0372670:intron 25.0%
! TTAAAATTGAGTCATTACAG+GGG + chr3_1:71325893-71325912 Msa0372670:intron 25.0%
!! GGTATTTTATGATTTTCTCA+CGG + chr3_1:71325915-71325934 Msa0372670:intron 25.0%
! TGATTGAAAGAGAAAGAAAA+GGG - chr3_1:71326004-71326023 None:intergenic 25.0%
! TAAAACAGAAATGAAAACAG+TGG - chr3_1:71326185-71326204 None:intergenic 25.0%
! CAAAATTCAAAGAAACAAAC+AGG - chr3_1:71326248-71326267 None:intergenic 25.0%
! AGCCAAAAAAATAAAGATAG+CGG - chr3_1:71326435-71326454 None:intergenic 25.0%
!!! CTATCTTTATTTTTTTGGCT+CGG + chr3_1:71326435-71326454 Msa0372670:intron 25.0%
!!! ATGTTTTTGAATTCAGAAGT+TGG - chr3_1:71326648-71326667 None:intergenic 25.0%
! ACAATATCGAAAAATCAAGA+TGG + chr3_1:71326684-71326703 Msa0372670:CDS 25.0%
! AAGTATATCTTCTTCTCTTT+GGG - chr3_1:71326727-71326746 None:intergenic 25.0%
! TAAGTATATCTTCTTCTCTT+TGG - chr3_1:71326728-71326747 None:intergenic 25.0%
!!! AATTTAACTTCTGGGTTTTA+GGG - chr3_1:71327510-71327529 None:intergenic 25.0%
!!! TAATTTAACTTCTGGGTTTT+AGG - chr3_1:71327511-71327530 None:intergenic 25.0%
!! AAATGTTTTCATGAAACTGT+AGG + chr3_1:71327655-71327674 Msa0372670:three_prime_UTR 25.0%
!! AATGTTTTCATGAAACTGTA+GGG + chr3_1:71327656-71327675 Msa0372670:three_prime_UTR 25.0%
! CCTAATGTCATTCATTATAT+GGG - chr3_1:71327860-71327879 None:intergenic 25.0%
! TCCTAATGTCATTCATTATA+TGG - chr3_1:71327861-71327880 None:intergenic 25.0%
TTGAAGAGATGAATGAGAAT+TGG + chr3_1:71322771-71322790 Msa0372670:CDS 30.0%
! AAGTTATTCTGGAGAGATTA+TGG + chr3_1:71323314-71323333 Msa0372670:intron 30.0%
TTAAATAAGTCAATCCAAGC+AGG + chr3_1:71323425-71323444 Msa0372670:intron 30.0%
ATGATGTGTTCCTCTTAAAT+TGG + chr3_1:71323719-71323738 Msa0372670:intron 30.0%
CATATTTATAAGTCATTGGC+TGG - chr3_1:71323798-71323817 None:intergenic 30.0%
TCAAATAAGTCAATCCAAAC+CGG + chr3_1:71323875-71323894 Msa0372670:intron 30.0%
! ATTTGGCTTCAGTTTATCTT+TGG + chr3_1:71324043-71324062 Msa0372670:intron 30.0%
TATAAAAATAGGGCCATAGT+TGG + chr3_1:71324141-71324160 Msa0372670:intron 30.0%
ATGATGTGATGCTCTTAAAT+TGG + chr3_1:71324179-71324198 Msa0372670:intron 30.0%
CTTCGGAAAAATATATTGCT+TGG - chr3_1:71324651-71324670 None:intergenic 30.0%
! CAAGCAATATATTTTTCCGA+AGG + chr3_1:71324649-71324668 Msa0372670:intron 30.0%
TCTATTAGTGATCTGTTTCA+AGG - chr3_1:71324715-71324734 None:intergenic 30.0%
TTGAAACAGATCACTAATAG+AGG + chr3_1:71324714-71324733 Msa0372670:intron 30.0%
TGCGAGGAACATTATATATT+TGG + chr3_1:71325015-71325034 Msa0372670:intron 30.0%
CATTATATATTTGGTCGTCT+TGG + chr3_1:71325024-71325043 Msa0372670:intron 30.0%
!!! CTGCTGATATATCTAGTTTT+AGG + chr3_1:71325110-71325129 Msa0372670:intron 30.0%
!!! AACATGCTTTTTTGTGCAAT+TGG + chr3_1:71325163-71325182 Msa0372670:intron 30.0%
!!! ACATGCTTTTTTGTGCAATT+GGG + chr3_1:71325164-71325183 Msa0372670:intron 30.0%
! TTTTTGTGCAATTGGGTTTT+AGG + chr3_1:71325171-71325190 Msa0372670:intron 30.0%
AAAGCATAAACTACAAGATG+AGG - chr3_1:71325353-71325372 None:intergenic 30.0%
!! TATGCTTTTTGTGAAAGTTG+AGG + chr3_1:71325365-71325384 Msa0372670:intron 30.0%
! TTTTTGTGAAAGTTGAGGAT+TGG + chr3_1:71325370-71325389 Msa0372670:intron 30.0%
! AAAATGAAAAGGCATATGCT+AGG - chr3_1:71325403-71325422 None:intergenic 30.0%
TCTATCAGAATGCAATAGAA+AGG - chr3_1:71325443-71325462 None:intergenic 30.0%
ATTCTGATAGATGTTGAGAA+AGG + chr3_1:71325452-71325471 Msa0372670:intron 30.0%
TTCTGATAGATGTTGAGAAA+GGG + chr3_1:71325453-71325472 Msa0372670:intron 30.0%
ACTAGATTAATTTCGATCCA+AGG - chr3_1:71325700-71325719 None:intergenic 30.0%
! CCTGTAATGACTCAATTTTA+AGG - chr3_1:71325894-71325913 None:intergenic 30.0%
CCTTAAAATTGAGTCATTAC+AGG + chr3_1:71325891-71325910 Msa0372670:intron 30.0%
TAAAATTGAGTCATTACAGG+GGG + chr3_1:71325894-71325913 Msa0372670:intron 30.0%
GTGATTGAAAGAGAAAGAAA+AGG - chr3_1:71326005-71326024 None:intergenic 30.0%
GCCAAAAAAATAAAGATAGC+GGG - chr3_1:71326434-71326453 None:intergenic 30.0%
ACATAAACATTACCATCTCA+TGG + chr3_1:71326482-71326501 Msa0372670:intron 30.0%
!! AAAATACTGCAGTTGATAAG+AGG - chr3_1:71326588-71326607 None:intergenic 30.0%
GTTGTTCAGATCATTATTGT+GGG - chr3_1:71326616-71326635 None:intergenic 30.0%
AATTCAAAAACATGCCTGAT+GGG + chr3_1:71326655-71326674 Msa0372670:CDS 30.0%
AGAAGAAGATATACTTATGC+AGG + chr3_1:71326731-71326750 Msa0372670:CDS 30.0%
AATTGCGTATAGCAAATTTC+AGG + chr3_1:71326767-71326786 Msa0372670:CDS 30.0%
ATACATAAAACTACATGACC+AGG - chr3_1:71327113-71327132 None:intergenic 30.0%
TCTCGCAAAATAGAAACAAA+AGG + chr3_1:71327172-71327191 Msa0372670:three_prime_UTR 30.0%
ATTTGCTCTTAACAGAATCT+TGG + chr3_1:71327256-71327275 Msa0372670:three_prime_UTR 30.0%
TCTTAACAGAATCTTGGTTA+AGG + chr3_1:71327262-71327281 Msa0372670:three_prime_UTR 30.0%
TGTATGAATGCTAGTTAGAT+TGG + chr3_1:71327472-71327491 Msa0372670:three_prime_UTR 30.0%
AATGTATTAGGCAAATGCTT+TGG + chr3_1:71327767-71327786 Msa0372670:three_prime_UTR 30.0%
!! AAAGCTTTGGATCAGTTTAA+GGG - chr3_1:71327795-71327814 None:intergenic 30.0%
!! AAAAGCTTTGGATCAGTTTA+AGG - chr3_1:71327796-71327815 None:intergenic 30.0%
! TTAAACTGATCCAAAGCTTT+TGG + chr3_1:71327795-71327814 Msa0372670:three_prime_UTR 30.0%
CCCATATAATGAATGACATT+AGG + chr3_1:71327857-71327876 Msa0372670:three_prime_UTR 30.0%
!!! TTTTTTTGTCTTGGATGTAG+TGG + chr3_1:71327934-71327953 Msa0372670:three_prime_UTR 30.0%
TGTTGTTGTGATTCTTCGAA+AGG - chr3_1:71322525-71322544 None:intergenic 35.0%
TGGAGAAGAGTGATTTGAAT+TGG - chr3_1:71322562-71322581 None:intergenic 35.0%
!! AGAATTGACGGATTGTTGTT+GGG - chr3_1:71322595-71322614 None:intergenic 35.0%
TGAATGAGAATTGGAATGAG+AGG + chr3_1:71322780-71322799 Msa0372670:CDS 35.0%
AATTGGAATGAGAGGAGAAA+AGG + chr3_1:71322788-71322807 Msa0372670:CDS 35.0%
ATTGGAATGAGAGGAGAAAA+GGG + chr3_1:71322789-71322808 Msa0372670:CDS 35.0%
GAAAGGTGGGATTTATAGTT+TGG + chr3_1:71322844-71322863 Msa0372670:CDS 35.0%
TAAGGAGATTGAGAAACTTG+AGG + chr3_1:71322925-71322944 Msa0372670:CDS 35.0%
! AGACCTATTTTGCACCTTAT+AGG + chr3_1:71323204-71323223 Msa0372670:intron 35.0%
TGTCCTATAAGGTGCAAAAT+AGG - chr3_1:71323210-71323229 None:intergenic 35.0%
CTAAGCATGTATGTCCTATA+AGG - chr3_1:71323221-71323240 None:intergenic 35.0%
CTTATAGGACATACATGCTT+AGG + chr3_1:71323219-71323238 Msa0372670:intron 35.0%
!! AACACTTTGTGAGAGTGTTT+AGG + chr3_1:71323486-71323505 Msa0372670:intron 35.0%
! AGAGTGTTTAGTATAGCTCA+CGG + chr3_1:71323947-71323966 Msa0372670:intron 35.0%
GCTCTTGAAGATAGCTAATA+TGG + chr3_1:71324015-71324034 Msa0372670:intron 35.0%
ACTGAAACTTCAGATTGAAG+TGG - chr3_1:71324298-71324317 None:intergenic 35.0%
CACGTATTGTTTGTAACCTA+TGG + chr3_1:71324365-71324384 Msa0372670:intron 35.0%
! CTCGGGTAGAGTTTAAAATT+TGG + chr3_1:71324397-71324416 Msa0372670:intron 35.0%
! GGGTAGAGTTTAAAATTTGG+AGG + chr3_1:71324400-71324419 Msa0372670:intron 35.0%
! TTGGAGGCTTTTAATGTGTT+TGG + chr3_1:71324416-71324435 Msa0372670:intron 35.0%
! CATCAGTTCTAGTTAAGATG+AGG + chr3_1:71324587-71324606 Msa0372670:intron 35.0%
! TTTCCGAAGGTATATTTGAG+TGG + chr3_1:71324662-71324681 Msa0372670:intron 35.0%
CATCCACTCAAATATACCTT+CGG - chr3_1:71324668-71324687 None:intergenic 35.0%
ATTAGTGATCTGTTTCAAGG+TGG - chr3_1:71324712-71324731 None:intergenic 35.0%
ACAGATCACTAATAGAGGAT+AGG + chr3_1:71324719-71324738 Msa0372670:intron 35.0%
TCAATAATCATAGCACGCAA+TGG - chr3_1:71325084-71325103 None:intergenic 35.0%
ACTAGATATATCAGCAGACT+TGG - chr3_1:71325107-71325126 None:intergenic 35.0%
! AACTCTACTAGTGTTGAAGT+TGG + chr3_1:71325206-71325225 Msa0372670:intron 35.0%
TCAGCACTTTCATAACAAAG+TGG - chr3_1:71325313-71325332 None:intergenic 35.0%
! CAATAGAAAGGCAGTATTGA+TGG - chr3_1:71325431-71325450 None:intergenic 35.0%
CTATTTCCAAGTCTTCTCTT+CGG + chr3_1:71325944-71325963 Msa0372670:intron 35.0%
AAAGAGGAGAAACAGAAACA+GGG - chr3_1:71326145-71326164 None:intergenic 35.0%
AAAAGAGGAGAAACAGAAAC+AGG - chr3_1:71326146-71326165 None:intergenic 35.0%
!!! GCCCGCTATCTTTATTTTTT+TGG + chr3_1:71326430-71326449 Msa0372670:intron 35.0%
CGTTGTTCAGATCATTATTG+TGG - chr3_1:71326617-71326636 None:intergenic 35.0%
GAATTCAAAAACATGCCTGA+TGG + chr3_1:71326654-71326673 Msa0372670:CDS 35.0%
TACTTATGCAGGAATTCGAA+CGG + chr3_1:71326742-71326761 Msa0372670:CDS 35.0%
TCAGGTGCTTATTAAAAGAC+AGG + chr3_1:71326785-71326804 Msa0372670:intron 35.0%
TCAAGACACACATATTTAGC+CGG + chr3_1:71326916-71326935 Msa0372670:CDS 35.0%
ATGTATTTCCACCCATCAAT+TGG - chr3_1:71326948-71326967 None:intergenic 35.0%
AAATACATGATTGAGGTGGT+GGG + chr3_1:71326960-71326979 Msa0372670:CDS 35.0%
CTTCTCTTCTTTGAATGGTT+GGG - chr3_1:71327048-71327067 None:intergenic 35.0%
TCTTCTCTTCTTTGAATGGT+TGG - chr3_1:71327049-71327068 None:intergenic 35.0%
GAAGTCTTCTCTTCTTTGAA+TGG - chr3_1:71327053-71327072 None:intergenic 35.0%
! GTTTTATGTATTCTCTGCAG+AGG + chr3_1:71327122-71327141 Msa0372670:three_prime_UTR 35.0%
! TCACATTGTCATTTCCTTCA+TGG - chr3_1:71327294-71327313 None:intergenic 35.0%
!! ATGTCGCTTTAACACTTAGA+AGG + chr3_1:71327371-71327390 Msa0372670:three_prime_UTR 35.0%
TTTAGATCAAGCACAACTGA+AGG + chr3_1:71327544-71327563 Msa0372670:three_prime_UTR 35.0%
AACTGAAGGAAGCAAGTTTA+AGG + chr3_1:71327558-71327577 Msa0372670:three_prime_UTR 35.0%
TGACATAACGTATCTTCAAG+AGG + chr3_1:71327624-71327643 Msa0372670:three_prime_UTR 35.0%
GACATAACGTATCTTCAAGA+GGG + chr3_1:71327625-71327644 Msa0372670:three_prime_UTR 35.0%
TGAAACTGTAGGGTACAAAA+TGG + chr3_1:71327666-71327685 Msa0372670:three_prime_UTR 35.0%
! TGTAGGGTACAAAATGGATT+TGG + chr3_1:71327672-71327691 Msa0372670:three_prime_UTR 35.0%
ATTTGGACCTTTGTATGTGT+TGG + chr3_1:71327689-71327708 Msa0372670:three_prime_UTR 35.0%
GCACTGAGAAAGAAATAGAA+TGG + chr3_1:71327711-71327730 Msa0372670:three_prime_UTR 35.0%
TGTCATTCATTATATGGGTG+AGG - chr3_1:71327855-71327874 None:intergenic 35.0%
TGAATGACATTAGGATGCAT+AGG + chr3_1:71327866-71327885 Msa0372670:three_prime_UTR 35.0%
! GATTGTTGTTGGGAGTTTGA+TGG - chr3_1:71322585-71322604 None:intergenic 40.0%
!! GAGAATTGACGGATTGTTGT+TGG - chr3_1:71322596-71322615 None:intergenic 40.0%
GATTGCGAGATGAGAATTGA+CGG - chr3_1:71322607-71322626 None:intergenic 40.0%
AAAAGGGTTGAAGAAGGAGA+AGG + chr3_1:71322805-71322824 Msa0372670:CDS 40.0%
AAGAAACAGAAGTTGCATGC+TGG + chr3_1:71322893-71322912 Msa0372670:CDS 40.0%
AGAAACAGAAGTTGCATGCT+GGG + chr3_1:71322894-71322913 Msa0372670:CDS 40.0%
AAACTTGAGGAGGCGAAATT+GGG + chr3_1:71322938-71322957 Msa0372670:CDS 40.0%
!! TGAAGTATTGACACAGACAC+CGG + chr3_1:71323087-71323106 Msa0372670:intron 40.0%
! AGAGTGTTTAGGATAGCTCA+TGG + chr3_1:71323497-71323516 Msa0372670:intron 40.0%
TAGCTCATGGAAACAGCTTA+TGG + chr3_1:71323510-71323529 Msa0372670:intron 40.0%
AGCTCATGGAAACAGCTTAT+GGG + chr3_1:71323511-71323530 Msa0372670:intron 40.0%
! ACAGAAAGAGCTTTATGAGC+CGG - chr3_1:71323897-71323916 None:intergenic 40.0%
CATTGTGTACATGTCATTGC+TGG - chr3_1:71324216-71324235 None:intergenic 40.0%
! AGAGCATTTAGGATCAGCAT+AGG - chr3_1:71324330-71324349 None:intergenic 40.0%
GGTTACAAACAATACGTGCT+GGG - chr3_1:71324363-71324382 None:intergenic 40.0%
AGGTTACAAACAATACGTGC+TGG - chr3_1:71324364-71324383 None:intergenic 40.0%
! AACCTATGGCTTGTGTTTCT+CGG + chr3_1:71324379-71324398 Msa0372670:intron 40.0%
TCATCGCCATCTATAACCTA+GGG - chr3_1:71324766-71324785 None:intergenic 40.0%
TTCATCGCCATCTATAACCT+AGG - chr3_1:71324767-71324786 None:intergenic 40.0%
ATGTTGAGAAAGGGTAGCAA+AGG + chr3_1:71325462-71325481 Msa0372670:intron 40.0%
ACGCACACTGAAATAGATGT+AGG + chr3_1:71325644-71325663 Msa0372670:intron 40.0%
! TTTAGAGGCTATGCCTGTTT+TGG + chr3_1:71326100-71326119 Msa0372670:intron 40.0%
CACGAAACACGAAGAAAAAG+AGG - chr3_1:71326161-71326180 None:intergenic 40.0%
! CTCTTTTTCTTCGTGTTTCG+TGG + chr3_1:71326159-71326178 Msa0372670:intron 40.0%
!! AAATAAAGATAGCGGGCTAC+CGG - chr3_1:71326427-71326446 None:intergenic 40.0%
ATGTTGTCAGTCCTGTATAG+CGG - chr3_1:71326466-71326485 None:intergenic 40.0%
ACAACTATGATGCCATGAGA+TGG - chr3_1:71326497-71326516 None:intergenic 40.0%
!! CTGCAGTTGATAAGAGGATT+AGG - chr3_1:71326582-71326601 None:intergenic 40.0%
TGGGTGGAAATACATGATTG+AGG + chr3_1:71326953-71326972 Msa0372670:CDS 40.0%
GTGGAAATACATGATTGAGG+TGG + chr3_1:71326956-71326975 Msa0372670:CDS 40.0%
GAAATACATGATTGAGGTGG+TGG + chr3_1:71326959-71326978 Msa0372670:CDS 40.0%
TCTTTGAATGGTTGGGTAGA+GGG - chr3_1:71327041-71327060 None:intergenic 40.0%
TTCTTTGAATGGTTGGGTAG+AGG - chr3_1:71327042-71327061 None:intergenic 40.0%
GATAAGAGTTACATTCCCCT+TGG + chr3_1:71327077-71327096 Msa0372670:CDS 40.0%
GGTTAAGGTTCAAACCATGA+AGG + chr3_1:71327277-71327296 Msa0372670:three_prime_UTR 40.0%
GACAATGTGATGTACTGTGT+TGG + chr3_1:71327304-71327323 Msa0372670:three_prime_UTR 40.0%
AATGTGATGTACTGTGTTGG+TGG + chr3_1:71327307-71327326 Msa0372670:three_prime_UTR 40.0%
GAAAATATTGCTGCCCAGAT+TGG - chr3_1:71327335-71327354 None:intergenic 40.0%
GCAGTATGTACAGTGAGTTA+AGG + chr3_1:71327396-71327415 Msa0372670:three_prime_UTR 40.0%
AACGTATCTTCAAGAGGGAA+AGG + chr3_1:71327630-71327649 Msa0372670:three_prime_UTR 40.0%
!! TGAGGATTTCAAGCTTTGGA+GGG - chr3_1:71327837-71327856 None:intergenic 40.0%
GTTTGGTCTAATCCTAGTGT+CGG - chr3_1:71327893-71327912 None:intergenic 40.0%
TGTTGTTGGGAGTTTGATGG+TGG - chr3_1:71322582-71322601 None:intergenic 45.0%
AAGACGAATGGAACGAAGCA+TGG + chr3_1:71322639-71322658 Msa0372670:CDS 45.0%
AGACGAATGGAACGAAGCAT+GGG + chr3_1:71322640-71322659 Msa0372670:CDS 45.0%
!! GTCTTTGGTGTTAGGTCTTG+TGG - chr3_1:71322680-71322699 None:intergenic 45.0%
AAATTCACGTCTCCTTCCCA+TGG - chr3_1:71322710-71322729 None:intergenic 45.0%
AGGAGACGTGAATTTCGCTT+CGG + chr3_1:71322715-71322734 Msa0372670:CDS 45.0%
GAATTTCGCTTCGGAAGAAG+TGG + chr3_1:71322724-71322743 Msa0372670:CDS 45.0%
GAGGAGAAAAGGGTTGAAGA+AGG + chr3_1:71322799-71322818 Msa0372670:CDS 45.0%
GTTGAAGAAGGAGAAGGTTG+AGG + chr3_1:71322811-71322830 Msa0372670:CDS 45.0%
GTTGAGGAGGAGAATGTGAA+AGG + chr3_1:71322827-71322846 Msa0372670:CDS 45.0%
AGGAGGAGAATGTGAAAGGT+GGG + chr3_1:71322831-71322850 Msa0372670:CDS 45.0%
GGAGATTGAGAAACTTGAGG+AGG + chr3_1:71322928-71322947 Msa0372670:CDS 45.0%
GAAACTTGAGGAGGCGAAAT+TGG + chr3_1:71322937-71322956 Msa0372670:CDS 45.0%
AACTTGAGGAGGCGAAATTG+GGG + chr3_1:71322939-71322958 Msa0372670:CDS 45.0%
ATCGCATACGTGTCAGTTTC+TGG - chr3_1:71323771-71323790 None:intergenic 45.0%
! AAGAGCTTTATGAGCCGGTT+TGG - chr3_1:71323892-71323911 None:intergenic 45.0%
TGTGTACATGTCATTGCTGG+TGG - chr3_1:71324213-71324232 None:intergenic 45.0%
GATCGAATGTAACGACACGT+TGG + chr3_1:71324253-71324272 Msa0372670:intron 45.0%
ATGTAACGACACGTTGGTGT+TGG + chr3_1:71324259-71324278 Msa0372670:intron 45.0%
! TGTAACGACACGTTGGTGTT+GGG + chr3_1:71324260-71324279 Msa0372670:intron 45.0%
! ACCTATGGCTTGTGTTTCTC+GGG + chr3_1:71324380-71324399 Msa0372670:intron 45.0%
CCATCTATAACCTAGGGACT+AGG - chr3_1:71324760-71324779 None:intergenic 45.0%
CCTAGTCCCTAGGTTATAGA+TGG + chr3_1:71324757-71324776 Msa0372670:intron 45.0%
ATGTGTAGAGAAGATGTGCG+AGG + chr3_1:71324999-71325018 Msa0372670:intron 45.0%
TGAGAAAGGGTAGCAAAGGT+AGG + chr3_1:71325466-71325485 Msa0372670:intron 45.0%
CGTGTTCCAAAAGCAAGTAG+TGG + chr3_1:71325794-71325813 Msa0372670:intron 45.0%
CAAAAGCAAGTAGTGGTCAC+CGG + chr3_1:71325801-71325820 Msa0372670:intron 45.0%
AAAAGCAAGTAGTGGTCACC+GGG + chr3_1:71325802-71325821 Msa0372670:intron 45.0%
GTTGCATTCTTGTTGCAGCA+TGG + chr3_1:71325824-71325843 Msa0372670:intron 45.0%
TTCACACCGAAGAGAAGACT+TGG - chr3_1:71325953-71325972 None:intergenic 45.0%
! AAGTCTTCTCTTCGGTGTGA+AGG + chr3_1:71325952-71325971 Msa0372670:intron 45.0%
GGGAAAGTGAAGAGTTGAGA+GGG - chr3_1:71325984-71326003 None:intergenic 45.0%
AGGGAAAGTGAAGAGTTGAG+AGG - chr3_1:71325985-71326004 None:intergenic 45.0%
GCATAGCCTCTAAACAAAGG+AGG - chr3_1:71326094-71326113 None:intergenic 45.0%
CAGGCATAGCCTCTAAACAA+AGG - chr3_1:71326097-71326116 None:intergenic 45.0%
AAACAGAGTGGCTCCAAAAC+AGG - chr3_1:71326116-71326135 None:intergenic 45.0%
!! AATAAAGATAGCGGGCTACC+GGG - chr3_1:71326426-71326445 None:intergenic 45.0%
TCAAAAACATGCCTGATGGG+TGG + chr3_1:71326658-71326677 Msa0372670:CDS 45.0%
! CAAAAACATGCCTGATGGGT+GGG + chr3_1:71326659-71326678 Msa0372670:CDS 45.0%
GATATTGTTTCCCACCCATC+AGG - chr3_1:71326672-71326691 None:intergenic 45.0%
AGACACACATATTTAGCCGG+AGG + chr3_1:71326919-71326938 Msa0372670:CDS 45.0%
AGAGTTACATTCCCCTTGGT+AGG + chr3_1:71327081-71327100 Msa0372670:CDS 45.0%
! GAGATTTTCAGCTGCCATTC+CGG - chr3_1:71327227-71327246 None:intergenic 45.0%
GGAATGGCAGCTGAAAATCT+CGG + chr3_1:71327226-71327245 Msa0372670:three_prime_UTR 45.0%
CTCAGTGCCAACACATACAA+AGG - chr3_1:71327699-71327718 None:intergenic 45.0%
GTGAGGATGACCAAAAGCTT+TGG - chr3_1:71327808-71327827 None:intergenic 45.0%
! GTGAGGATTTCAAGCTTTGG+AGG - chr3_1:71327838-71327857 None:intergenic 45.0%
TGGGTGAGGATTTCAAGCTT+TGG - chr3_1:71327841-71327860 None:intergenic 45.0%
TCATCTCGCAATCCTCGAAG+CGG + chr3_1:71322614-71322633 Msa0372670:CDS 50.0%
!! GTGCTCGTGTCTTTGGTGTT+AGG - chr3_1:71322688-71322707 None:intergenic 50.0%
ACCAAAGACACGAGCACCAT+GGG + chr3_1:71322691-71322710 Msa0372670:CDS 50.0%
TTTCGCTTCGGAAGAAGTGG+CGG + chr3_1:71322727-71322746 Msa0372670:CDS 50.0%
GAAGAAGGAGAAGGTTGAGG+AGG + chr3_1:71322814-71322833 Msa0372670:CDS 50.0%
GAGGAGGAGAATGTGAAAGG+TGG + chr3_1:71322830-71322849 Msa0372670:CDS 50.0%
AGAAGTTGCATGCTGGGCTT+TGG + chr3_1:71322900-71322919 Msa0372670:CDS 50.0%
ACTTGAGGAGGCGAAATTGG+GGG + chr3_1:71322940-71322959 Msa0372670:CDS 50.0%
TAGACGTGTCAGTGTTCGTC+CGG - chr3_1:71323109-71323128 None:intergenic 50.0%
!! AAGAGCTCTAAGAGCCTGCT+TGG - chr3_1:71323442-71323461 None:intergenic 50.0%
! GCATACGTGTCAGTTTCTGG+CGG - chr3_1:71323768-71323787 None:intergenic 50.0%
!! ACGTTGGTGTTGGGACATGT+CGG + chr3_1:71324269-71324288 Msa0372670:intron 50.0%
ACCCGAGAAACACAAGCCAT+AGG - chr3_1:71324384-71324403 None:intergenic 50.0%
! GAATAGCTTGCCTAGTCCCT+AGG + chr3_1:71324747-71324766 Msa0372670:intron 50.0%
AACGCAACATGGCAGTGTGA+CGG - chr3_1:71325744-71325763 None:intergenic 50.0%
! CGGTGACCACTACTTGCTTT+TGG - chr3_1:71325803-71325822 None:intergenic 50.0%
GCTGCAACAAGAATGCAACC+CGG - chr3_1:71325823-71325842 None:intergenic 50.0%
AGTGAAGAGTTGAGAGGGTG+TGG - chr3_1:71325979-71325998 None:intergenic 50.0%
! TGGTTTGCACTTCACAGCAG+AGG - chr3_1:71326027-71326046 None:intergenic 50.0%
TGAAGTGCAAACCAGACGCT+GGG + chr3_1:71326033-71326052 Msa0372670:intron 50.0%
CCTCTAAACAAAGGAGGCGA+TGG - chr3_1:71326088-71326107 None:intergenic 50.0%
! CCATCGCCTCCTTTGTTTAG+AGG + chr3_1:71326085-71326104 Msa0372670:intron 50.0%
ACAGGGAGACAGAAACAGAG+TGG - chr3_1:71326128-71326147 None:intergenic 50.0%
CACACATATTTAGCCGGAGG+AGG + chr3_1:71326922-71326941 Msa0372670:CDS 50.0%
TGGGACCAAATGCCAAGAGA+GGG + chr3_1:71326979-71326998 Msa0372670:CDS 50.0%
ACCAAATGCCAAGAGAGGGA+AGG + chr3_1:71326983-71327002 Msa0372670:CDS 50.0%
CCAAATGCCAAGAGAGGGAA+GGG + chr3_1:71326984-71327003 Msa0372670:CDS 50.0%
GTAGAGGGATCAGAGAGACT+TGG - chr3_1:71327026-71327045 None:intergenic 50.0%
ACCAGGCTATCTCCTACCAA+GGG - chr3_1:71327096-71327115 None:intergenic 50.0%
TGATCACTGCAACTTTGCCG+AGG + chr3_1:71327196-71327215 Msa0372670:three_prime_UTR 50.0%
!! TGTGTTGGTGGTGCCAATCT+GGG + chr3_1:71327319-71327338 Msa0372670:three_prime_UTR 50.0%
!! TTCAAGCTTTGGAGGGCTAG+AGG - chr3_1:71327830-71327849 None:intergenic 50.0%
CATTCGTCTTCACCGCTTCG+AGG - chr3_1:71322629-71322648 None:intergenic 55.0%
CTCGAAGCGGTGAAGACGAA+TGG + chr3_1:71322627-71322646 Msa0372670:CDS 55.0%
ACGAAGCATGGGAATCAGCG+TGG + chr3_1:71322651-71322670 Msa0372670:CDS 55.0%
CACCAAAGACACGAGCACCA+TGG + chr3_1:71322690-71322709 Msa0372670:CDS 55.0%
TCCCATGGTGCTCGTGTCTT+TGG - chr3_1:71322695-71322714 None:intergenic 55.0%
AAGACACGAGCACCATGGGA+AGG + chr3_1:71322695-71322714 Msa0372670:CDS 55.0%
!! GCATGCTGGGCTTTGGAGTA+AGG + chr3_1:71322907-71322926 Msa0372670:CDS 55.0%
CTTGAGGAGGCGAAATTGGG+GGG + chr3_1:71322941-71322960 Msa0372670:CDS 55.0%
TTGAGGAGGCGAAATTGGGG+GGG + chr3_1:71322942-71322961 Msa0372670:CDS 55.0%
ACTGCCATGTTGCGTTGCAG+TGG + chr3_1:71325748-71325767 Msa0372670:intron 55.0%
CTGCCATGTTGCGTTGCAGT+GGG + chr3_1:71325749-71325768 Msa0372670:intron 55.0%
TGGAACACGACACTGTGCGT+GGG - chr3_1:71325783-71325802 None:intergenic 55.0%
TTGGAACACGACACTGTGCG+TGG - chr3_1:71325784-71325803 None:intergenic 55.0%
GTGAAGTGCAAACCAGACGC+TGG + chr3_1:71326032-71326051 Msa0372670:intron 55.0%
GAAGTGCAAACCAGACGCTG+GGG + chr3_1:71326034-71326053 Msa0372670:intron 55.0%
GCGATGGCAGTGGTTAGAGA+CGG - chr3_1:71326072-71326091 None:intergenic 55.0%
AACAAAGGAGGCGATGGCAG+TGG - chr3_1:71326082-71326101 None:intergenic 55.0%
! GTCAGTCCTGTATAGCGGAG+CGG - chr3_1:71326461-71326480 None:intergenic 55.0%
! ACCCATCAATTGGCCTCCTC+CGG - chr3_1:71326938-71326957 None:intergenic 55.0%
GTGGGACCAAATGCCAAGAG+AGG + chr3_1:71326978-71326997 Msa0372670:CDS 55.0%
CCCTTCCCTCTCTTGGCATT+TGG - chr3_1:71326987-71327006 None:intergenic 55.0%
AACACTGCCCTTCCCTCTCT+TGG - chr3_1:71326994-71327013 None:intergenic 55.0%
CCAGGCTATCTCCTACCAAG+GGG - chr3_1:71327095-71327114 None:intergenic 55.0%
GACCAGGCTATCTCCTACCA+AGG - chr3_1:71327097-71327116 None:intergenic 55.0%
CTCTGCAGAGGTCATTGCAG+TGG + chr3_1:71327134-71327153 Msa0372670:three_prime_UTR 55.0%
CAACTTTGCCGAGGTGTGAC+CGG + chr3_1:71327205-71327224 Msa0372670:three_prime_UTR 55.0%
!! CTGTGTTGGTGGTGCCAATC+TGG + chr3_1:71327318-71327337 Msa0372670:three_prime_UTR 55.0%
GGATGCATAGGACCGACACT+AGG + chr3_1:71327878-71327897 Msa0372670:three_prime_UTR 55.0%
!! TTCGGAAGAAGTGGCGGACG+CGG + chr3_1:71322733-71322752 Msa0372670:CDS 60.0%
! AAATTGGGGGGGTGTGGTGG+TGG + chr3_1:71322953-71322972 Msa0372670:CDS 60.0%
GCAACATGGCAGTGTGACGG+CGG - chr3_1:71325741-71325760 None:intergenic 60.0%
CCACCCACTGCAACGCAACA+TGG - chr3_1:71325755-71325774 None:intergenic 60.0%
CCATGTTGCGTTGCAGTGGG+TGG + chr3_1:71325752-71325771 Msa0372670:intron 60.0%
TGTTGCGTTGCAGTGGGTGG+CGG + chr3_1:71325755-71325774 Msa0372670:intron 60.0%
GAACACGACACTGTGCGTGG+GGG - chr3_1:71325781-71325800 None:intergenic 60.0%
GGAACACGACACTGTGCGTG+GGG - chr3_1:71325782-71325801 None:intergenic 60.0%
GGCAGTGGTTAGAGACGGCT+GGG - chr3_1:71326067-71326086 None:intergenic 60.0%
TGGCAGTGGTTAGAGACGGC+TGG - chr3_1:71326068-71326087 None:intergenic 60.0%
TTAGCGGCCATCCTGCAACC+CGG + chr3_1:71326405-71326424 Msa0372670:intron 60.0%
AGCCGGAGGAGGCCAATTGA+TGG + chr3_1:71326933-71326952 Msa0372670:CDS 60.0%
GCCGGAGGAGGCCAATTGAT+GGG + chr3_1:71326934-71326953 Msa0372670:CDS 60.0%
GGAGGAGGCCAATTGATGGG+TGG + chr3_1:71326937-71326956 Msa0372670:CDS 60.0%
CCCCTTGGTAGGAGATAGCC+TGG + chr3_1:71327092-71327111 Msa0372670:exon 60.0%
TTGCCGAGGTGTGACCGGAA+TGG + chr3_1:71327210-71327229 Msa0372670:three_prime_UTR 60.0%
CTGCCATTCCGGTCACACCT+CGG - chr3_1:71327216-71327235 None:intergenic 60.0%
!! GCTTTGGAGGGCTAGAGGTG+AGG - chr3_1:71327825-71327844 None:intergenic 60.0%
GAGGCGAAATTGGGGGGGTG+TGG + chr3_1:71322947-71322966 Msa0372670:CDS 65.0%
! GCGAAATTGGGGGGGTGTGG+TGG + chr3_1:71322950-71322969 Msa0372670:CDS 65.0%
!! GGGGGTGTGGTGGTGGTGAA+GGG + chr3_1:71322960-71322979 Msa0372670:CDS 65.0%
!! GGGGTGTGGTGGTGGTGAAG+GGG + chr3_1:71322961-71322980 Msa0372670:CDS 65.0%
!! ATAGCGGGCTACCGGGTTGC+AGG - chr3_1:71326419-71326438 None:intergenic 65.0%
!! AGTGGCGGACGCGGAGACGA+AGG + chr3_1:71322742-71322761 Msa0372670:CDS 70.0%
!! GGGGGGTGTGGTGGTGGTGA+AGG + chr3_1:71322959-71322978 Msa0372670:CDS 70.0%
GGGACTGAGTCCCCAGCGTC+TGG - chr3_1:71326047-71326066 None:intergenic 70.0%
CGGGCTACCGGGTTGCAGGA+TGG - chr3_1:71326415-71326434 None:intergenic 70.0%
GCTCGGCCGCTCCGCTATAC+AGG + chr3_1:71326452-71326471 Msa0372670:intron 70.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 71322464 71327964 71322464 ID=Msa0372670;Name=Msa0372670
chr3_1 mRNA 71322464 71327964 71322464 ID=Msa0372670-mRNA-1;Parent=Msa0372670;Name=Msa0372670-mRNA-1;_AED=0.04;_eAED=0.04;_QI=51|1|1|1|1|1|3|855|299
chr3_1 exon 71322464 71323020 71322464 ID=Msa0372670-mRNA-1:exon:15692;Parent=Msa0372670-mRNA-1
chr3_1 exon 71326602 71326788 71326602 ID=Msa0372670-mRNA-1:exon:15693;Parent=Msa0372670-mRNA-1
chr3_1 exon 71326903 71327964 71326903 ID=Msa0372670-mRNA-1:exon:15694;Parent=Msa0372670-mRNA-1
chr3_1 five_prime_UTR 71322464 71322514 71322464 ID=Msa0372670-mRNA-1:five_prime_utr;Parent=Msa0372670-mRNA-1
chr3_1 CDS 71322515 71323020 71322515 ID=Msa0372670-mRNA-1:cds;Parent=Msa0372670-mRNA-1
chr3_1 CDS 71326602 71326788 71326602 ID=Msa0372670-mRNA-1:cds;Parent=Msa0372670-mRNA-1
chr3_1 CDS 71326903 71327109 71326903 ID=Msa0372670-mRNA-1:cds;Parent=Msa0372670-mRNA-1
chr3_1 three_prime_UTR 71327110 71327964 71327110 ID=Msa0372670-mRNA-1:three_prime_utr;Parent=Msa0372670-mRNA-1
Gene Sequence

>Msa0372670

ATGCAAACCTTTCGAAGAATCACAACAACAGCAACAAAATCAAACCAATTCAAATCACTCTTCTCCACCATCAAACTCCCAACAACAATCCGTCAATTCTCATCTCGCAATCCTCGAAGCGGTGAAGACGAATGGAACGAAGCATGGGAATCAGCGTGGTTACCACAAGACCTAACACCAAAGACACGAGCACCATGGGAAGGAGACGTGAATTTCGCTTCGGAAGAAGTGGCGGACGCGGAGACGAAGGCGTTTGTTGAAGAGATGAATGAGAATTGGAATGAGAGGAGAAAAGGGTTGAAGAAGGAGAAGGTTGAGGAGGAGAATGTGAAAGGTGGGATTTATAGTTTGGAAAATATTAAGAAGGATTATAGGTTGAAGAAACAGAAGTTGCATGCTGGGCTTTGGAGTAAGGAGATTGAGAAACTTGAGGAGGCGAAATTGGGGGGGTGTGGTGGTGGTGAAGGGGATGATGATATTCAGAAATTGCTTGATAGTTGTTCTGATATTTTTGACTCCCACAATAATGATCTGAACAACGCAAAAGATCCAACTTCTGAATTCAAAAACATGCCTGATGGGTGGGAAACAATATCGAAAAATCAAGATGGAAATATATGGGAGATGTCCCAAAGAGAAGAAGATATACTTATGCAGGAATTCGAACGGAGAATTGCGTATAGCAAATTTCAGATTGCAAGTTTTATCAAGACACACATATTTAGCCGGAGGAGGCCAATTGATGGGTGGAAATACATGATTGAGGTGGTGGGACCAAATGCCAAGAGAGGGAAGGGCAGTGTTTCTAGAGTACCAAGTCTCTCTGATCCCTCTACCCAACCATTCAAAGAAGAGAAGACTTCAGTTGATAAGAGTTACATTCCCCTTGGTAGGAGATAG

Protein sequence

>Msa0372670

MQTFRRITTTATKSNQFKSLFSTIKLPTTIRQFSSRNPRSGEDEWNEAWESAWLPQDLTPKTRAPWEGDVNFASEEVADAETKAFVEEMNENWNERRKGLKKEKVEEENVKGGIYSLENIKKDYRLKKQKLHAGLWSKEIEKLEEAKLGGCGGGEGDDDIQKLLDSCSDIFDSHNNDLNNAKDPTSEFKNMPDGWETISKNQDGNIWEMSQREEDILMQEFERRIAYSKFQIASFIKTHIFSRRRPIDGWKYMIEVVGPNAKRGKGSVSRVPSLSDPSTQPFKEEKTSVDKSYIPLGRR*