Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0200940 | AES65146.1 | 94.366 | 71 | 4 | 0 | 1 | 71 | 1 | 71 | 2.61e-40 | 140 |
| Msa0200940 | AES65146.1 | 95.000 | 80 | 4 | 0 | 72 | 151 | 7 | 86 | 5.84e-48 | 160 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0200940 | G7IG17 | 94.366 | 71 | 4 | 0 | 1 | 71 | 1 | 71 | 1.25e-40 | 140 |
| Msa0200940 | G7IG17 | 95.000 | 80 | 4 | 0 | 72 | 151 | 7 | 86 | 2.79e-48 | 160 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0102070 | Msa0200940 | 0.800944 | 1.136130e-48 | -8.615850e-47 |
| Msa0200940 | Msa0267010 | 0.810484 | 1.126832e-50 | -8.615850e-47 |
| Msa0200940 | Msa0282310 | 0.841196 | 5.500657e-58 | -8.615850e-47 |
| Msa0200940 | Msa0342240 | 0.857778 | 1.294425e-62 | -8.615850e-47 |
| Msa0200940 | Msa0414420 | 0.809388 | 1.939390e-50 | -8.615850e-47 |
| Msa0200940 | Msa0452900 | 0.824752 | 6.806877e-54 | -8.615850e-47 |
| Msa0200940 | Msa0564890 | 0.800398 | 1.468199e-48 | -8.615850e-47 |
| Msa0200940 | Msa0636170 | 0.801295 | 9.632661e-49 | -8.615850e-47 |
| Msa0200940 | Msa0743810 | 0.817964 | 2.508596e-52 | -8.615850e-47 |
| Msa0200940 | Msa0745060 | 0.812590 | 3.928108e-51 | -8.615850e-47 |
| Msa0200940 | Msa0783160 | 0.801427 | 9.051272e-49 | -8.615850e-47 |
| Msa0200940 | Msa0825860 | 0.823815 | 1.130614e-53 | -8.615850e-47 |
| Msa0200940 | Msa0865320 | 0.812443 | 4.228604e-51 | -8.615850e-47 |
| Msa0200940 | Msa1016280 | 0.810493 | 1.121447e-50 | -8.615850e-47 |
| Msa0200940 | Msa1025360 | 0.819059 | 1.416960e-52 | -8.615850e-47 |
| Msa0200940 | Msa1025370 | 0.811099 | 8.293247e-51 | -8.615850e-47 |
| Msa0200940 | Msa1044830 | 0.806125 | 9.576873e-50 | -8.615850e-47 |
| Msa0200940 | Msa1044840 | 0.816290 | 5.968593e-52 | -8.615850e-47 |
| Msa0200940 | Msa1092990 | 0.801357 | 9.354860e-49 | -8.615850e-47 |
| Msa0200940 | Msa1100980 | 0.810793 | 9.661084e-51 | -8.615850e-47 |
| Msa0200940 | Msa1146110 | 0.812159 | 4.878533e-51 | -8.615850e-47 |
| Msa0200940 | Msa1187940 | 0.800385 | 1.477691e-48 | -8.615850e-47 |
| Msa0200940 | Msa1192640 | 0.810009 | 1.426093e-50 | -8.615850e-47 |
| Msa0200940 | Msa1269670 | 0.804430 | 2.168391e-49 | -8.615850e-47 |
| Msa0200940 | Msa1270230 | 0.814005 | 1.919784e-51 | -8.615850e-47 |
| Msa0200940 | Msa1270270 | 0.815674 | 8.189727e-52 | -8.615850e-47 |
| Msa0200940 | Msa1283330 | 0.801300 | 9.611391e-49 | -8.615850e-47 |
| Msa0200940 | Msa1285930 | 0.835128 | 2.009627e-56 | -8.615850e-47 |
| Msa0200940 | Msa1287800 | 0.806328 | 8.676947e-50 | -8.615850e-47 |
| Msa0200940 | Msa1287810 | 0.819683 | 1.021207e-52 | -8.615850e-47 |
| Msa0200940 | Msa1305480 | 0.863599 | 2.219125e-64 | -8.615850e-47 |
| Msa0200940 | Msa1340590 | 0.802187 | 6.319910e-49 | -8.615850e-47 |
| Msa0200940 | Msa1433120 | 0.815170 | 1.060122e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0200940 | MtrunA17_Chr2g0297121 | 91.045 | 67 | 6 | 0 | 5 | 71 | 1 | 67 | 1.25e-40 | 131 |
| Msa0200940 | MtrunA17_Chr2g0297121 | 92.424 | 66 | 5 | 0 | 72 | 137 | 3 | 68 | 4.24e-40 | 130 |
| Msa0200940 | MtrunA17_Chr2g0297141 | 78.750 | 80 | 15 | 1 | 72 | 149 | 3 | 82 | 7.82e-40 | 129 |
| Msa0200940 | MtrunA17_Chr2g0297141 | 75.949 | 79 | 19 | 0 | 5 | 83 | 1 | 79 | 2.19e-38 | 126 |
| Msa0200940 | MtrunA17_Chr3g0129281 | 50.549 | 91 | 31 | 3 | 74 | 150 | 9 | 99 | 3.53e-21 | 82.4 |
| Msa0200940 | MtrunA17_Chr3g0129281 | 58.333 | 60 | 19 | 1 | 1 | 54 | 1 | 60 | 3.09e-15 | 67.0 |
| Msa0200940 | MtrunA17_Chr8g0383151 | 40.566 | 106 | 41 | 3 | 67 | 150 | 4 | 109 | 1.84e-16 | 70.5 |
| Msa0200940 | MtrunA17_Chr8g0383151 | 51.724 | 58 | 22 | 1 | 1 | 52 | 3 | 60 | 1.28e-11 | 57.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0200940 | AT5G64850.1 | 40.541 | 111 | 39 | 3 | 67 | 150 | 3 | 113 | 5.70e-16 | 69.7 |
| Msa0200940 | AT5G09960.1 | 40.777 | 103 | 36 | 4 | 73 | 150 | 9 | 111 | 2.39e-13 | 62.8 |
| Msa0200940 | AT5G09960.1 | 57.377 | 61 | 17 | 3 | 1 | 52 | 1 | 61 | 6.67e-11 | 56.6 |
| Msa0200940 | AT5G09960.3 | 40.385 | 104 | 37 | 4 | 72 | 150 | 6 | 109 | 2.98e-13 | 62.4 |
| Msa0200940 | AT5G09960.3 | 56.140 | 57 | 17 | 2 | 4 | 52 | 3 | 59 | 5.11e-11 | 56.6 |
| Msa0200940 | AT5G19473.1 | 40.217 | 92 | 42 | 4 | 72 | 150 | 6 | 97 | 5.15e-13 | 61.6 |
| Msa0200940 | AT5G19473.2 | 38.947 | 95 | 45 | 4 | 69 | 150 | 38 | 132 | 4.77e-12 | 60.1 |
Find 39 sgRNAs with CRISPR-Local
Find 354 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGTGCCGCGGTTTGGGGAAT+GGG | 0.361355 | 2_1:+21636000 | Msa0200940:CDS |
| AGTGCCGCGGTTTGGGGAAT+GGG | 0.361355 | 2_1:+21641989 | Msa0200940:CDS |
| CAGTGCCGCGGTTTGGGGAA+TGG | 0.363664 | 2_1:+21635999 | Msa0200940:CDS |
| CAGTGCCGCGGTTTGGGGAA+TGG | 0.363664 | 2_1:+21641988 | Msa0200940:CDS |
| CATTCCCCAAACCGCGGCAC+TGG | 0.366389 | 2_1:-21635998 | None:intergenic |
| CATTCCCCAAACCGCGGCAC+TGG | 0.366389 | 2_1:-21641987 | None:intergenic |
| TCCATTGAATAATCTCGTAC+TGG | 0.439206 | 2_1:-21636034 | None:intergenic |
| TCCATTGAATAATCTCGTAC+TGG | 0.439206 | 2_1:-21642023 | None:intergenic |
| ATTCCCCAAACCGCGGCACT+GGG | 0.449762 | 2_1:-21635997 | None:intergenic |
| ATTCCCCAAACCGCGGCACT+GGG | 0.449762 | 2_1:-21641986 | None:intergenic |
| TCCCCAAACCGCGGCACTGG+GGG | 0.495053 | 2_1:-21635995 | None:intergenic |
| TCCCCAAACCGCGGCACTGG+GGG | 0.495053 | 2_1:-21641984 | None:intergenic |
| AGGAACTCAAGGCTTCATTC+CGG | 0.500392 | 2_1:+21636110 | Msa0200940:CDS |
| AGGAACTCAAGGCTTCATTC+CGG | 0.500392 | 2_1:+21642099 | Msa0200940:CDS |
| CCCAGTACGAGATTATTCAA+TGG | 0.537136 | 2_1:+21636033 | Msa0200940:CDS |
| CCCAGTACGAGATTATTCAA+TGG | 0.537136 | 2_1:+21642022 | Msa0200940:CDS |
| ACACAAGAGTCTTGGTAATG+AGG | 0.537488 | 2_1:+21636087 | Msa0200940:CDS |
| ACACAAGAGTCTTGGTAATG+AGG | 0.537488 | 2_1:+21642076 | Msa0200940:CDS |
| GAAGGAAGAGCTTCATGAAG+TGG | 0.549945 | 2_1:+21642409 | Msa0200940:CDS |
| CCATTGAATAATCTCGTACT+GGG | 0.551099 | 2_1:-21636033 | None:intergenic |
| CCATTGAATAATCTCGTACT+GGG | 0.551099 | 2_1:-21642022 | None:intergenic |
| AGAAAACTACACAAGAGTCT+TGG | 0.557677 | 2_1:+21636079 | Msa0200940:CDS |
| AGAAAACTACACAAGAGTCT+TGG | 0.557677 | 2_1:+21642068 | Msa0200940:CDS |
| GTTTGGGGAATGGGATCAGA+AGG | 0.558166 | 2_1:+21636009 | Msa0200940:CDS |
| GTTTGGGGAATGGGATCAGA+AGG | 0.558166 | 2_1:+21641998 | Msa0200940:CDS |
| TGCGTTGACGCTGAATGTGC+CGG | 0.570231 | 2_1:-21636129 | None:intergenic |
| TGCGTTGACGCTGAATGTGC+CGG | 0.570231 | 2_1:-21642118 | None:intergenic |
| TGGTAATGAGGAGGAACTCA+AGG | 0.571983 | 2_1:+21636099 | Msa0200940:CDS |
| TGGTAATGAGGAGGAACTCA+AGG | 0.571983 | 2_1:+21642088 | Msa0200940:CDS |
| TTCCCCAAACCGCGGCACTG+GGG | 0.602803 | 2_1:-21635996 | None:intergenic |
| TTCCCCAAACCGCGGCACTG+GGG | 0.602803 | 2_1:-21641985 | None:intergenic |
| CTGAAATCAGTGTCATGGAA+CGG | 0.618031 | 2_1:+21635113 | None:intergenic |
| TGTCATGGAACGGCATACAA+AGG | 0.647262 | 2_1:+21635123 | None:intergenic |
| CAAGAGTCTTGGTAATGAGG+AGG | 0.661344 | 2_1:+21636090 | Msa0200940:CDS |
| CAAGAGTCTTGGTAATGAGG+AGG | 0.661344 | 2_1:+21642079 | Msa0200940:CDS |
| TTTGGGGAATGGGATCAGAA+GGG | 0.675808 | 2_1:+21636010 | Msa0200940:CDS |
| TTTGGGGAATGGGATCAGAA+GGG | 0.675808 | 2_1:+21641999 | Msa0200940:CDS |
| TGATCCCATTCCCCAAACCG+CGG | 0.684518 | 2_1:-21636004 | None:intergenic |
| TGATCCCATTCCCCAAACCG+CGG | 0.684518 | 2_1:-21641993 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CAAATTATTTTTTGTATAAT+CGG | - | chr2_1:21635209-21635228 | None:intergenic | 10.0% |
| !! | CAAAATAATCTATTTAATAT+AGG | - | chr2_1:21637206-21637225 | None:intergenic | 10.0% |
| !!! | TACTTTTTTTTTGTAAATTA+TGG | - | chr2_1:21637496-21637515 | None:intergenic | 10.0% |
| !!! | ACGAAATTAATTAATAATTT+TGG | - | chr2_1:21637822-21637841 | None:intergenic | 10.0% |
| !! | GTATTTACAATTTAATTAAT+AGG | + | chr2_1:21637857-21637876 | Msa0200940:intron | 10.0% |
| !!! | TTTAATTTTTTTTTTTTGAG+GGG | - | chr2_1:21638057-21638076 | None:intergenic | 10.0% |
| !! | AAATAAATTGTAATAAATGA+TGG | + | chr2_1:21639089-21639108 | Msa0200940:intron | 10.0% |
| !! | TGTTTAAAAAAAATATTAGT+TGG | + | chr2_1:21639885-21639904 | Msa0200940:intron | 10.0% |
| !! | GTTTAAAAAAAATATTAGTT+GGG | + | chr2_1:21639886-21639905 | Msa0200940:intron | 10.0% |
| !! | CAAAAATAGTAAATTTATTT+CGG | + | chr2_1:21640328-21640347 | Msa0200940:intron | 10.0% |
| !! | TTATTCTTTATAAATGATAT+GGG | - | chr2_1:21640554-21640573 | None:intergenic | 10.0% |
| !! | ATTATTCTTTATAAATGATA+TGG | - | chr2_1:21640555-21640574 | None:intergenic | 10.0% |
| !!! | ATTAAATAAAATCCTTTTTT+AGG | - | chr2_1:21640923-21640942 | None:intergenic | 10.0% |
| !!! | ATAAATCTTCTTTTTATAAA+GGG | - | chr2_1:21640950-21640969 | None:intergenic | 10.0% |
| !!! | TATAAATCTTCTTTTTATAA+AGG | - | chr2_1:21640951-21640970 | None:intergenic | 10.0% |
| !! | TTTATAGTACATTTATATAT+AGG | - | chr2_1:21641018-21641037 | None:intergenic | 10.0% |
| !!! | CAAATTATTTTTTGTATAAT+CGG | - | chr2_1:21635209-21635228 | None:intergenic | 10.0% |
| !!! | TTGCTTTTTTTTTTTTTTTT+AGG | + | chr2_1:21641593-21641612 | Msa0200940:intron | 10.0% |
| !! | CGATTATACAAAAAATAATT+TGG | + | chr2_1:21635207-21635226 | Msa0200940:intron | 15.0% |
| !! | ATACAAAAAATAATTTGGTT+TGG | + | chr2_1:21635212-21635231 | Msa0200940:intron | 15.0% |
| !!! | TACAAAAAATAATTTGGTTT+GGG | + | chr2_1:21635213-21635232 | Msa0200940:intron | 15.0% |
| !!! | CTTGCTTTTTTTTTTTTTTT+AGG | + | chr2_1:21635604-21635623 | Msa0200940:intron | 15.0% |
| !!! | TCATATTTATAAGAGATTTT+GGG | - | chr2_1:21635830-21635849 | None:intergenic | 15.0% |
| !!! | ATCATATTTATAAGAGATTT+TGG | - | chr2_1:21635831-21635850 | None:intergenic | 15.0% |
| !! | AAATCTCTTATAAATATGAT+CGG | + | chr2_1:21635831-21635850 | Msa0200940:intron | 15.0% |
| !! | ATCAAAGTTAAATGATTTAT+AGG | - | chr2_1:21635956-21635975 | None:intergenic | 15.0% |
| !!! | TATGTTATTTTTGTCATATT+CGG | + | chr2_1:21636647-21636666 | Msa0200940:intron | 15.0% |
| !!! | CTAATTAAAAACATACATTT+TGG | - | chr2_1:21636695-21636714 | None:intergenic | 15.0% |
| !!! | AATAGTTGTACAAATTTTTT+AGG | - | chr2_1:21637265-21637284 | None:intergenic | 15.0% |
| !! | AATTATTAATTAATTTCGTC+TGG | + | chr2_1:21637823-21637842 | Msa0200940:intron | 15.0% |
| !! | CAAAAAAAAAAAAAAACCAA+TGG | + | chr2_1:21637922-21637941 | Msa0200940:intron | 15.0% |
| !!! | GAGTAGAAAAAATTATTTTA+GGG | + | chr2_1:21638258-21638277 | Msa0200940:intron | 15.0% |
| !!! | AGTAGAAAAAATTATTTTAG+GGG | + | chr2_1:21638259-21638278 | Msa0200940:intron | 15.0% |
| !! | ATGCAAAGAAAAAATTATTT+AGG | + | chr2_1:21638306-21638325 | Msa0200940:intron | 15.0% |
| !! | TTAGTGTATATTATATTGTT+TGG | + | chr2_1:21638572-21638591 | Msa0200940:intron | 15.0% |
| !!! | ATTTTAATATCTCTAACAAT+TGG | + | chr2_1:21638765-21638784 | Msa0200940:intron | 15.0% |
| !! | GTTGAAAGTAATATTTAATA+TGG | - | chr2_1:21638800-21638819 | None:intergenic | 15.0% |
| !!! | TTTATGATGTTTTTAGAAAA+TGG | - | chr2_1:21639694-21639713 | None:intergenic | 15.0% |
| !! | TTTAATATCACATAGTTTAT+AGG | + | chr2_1:21639714-21639733 | Msa0200940:intron | 15.0% |
| !!! | TGATAATTATTTTAAGACAA+AGG | - | chr2_1:21639847-21639866 | None:intergenic | 15.0% |
| !!! | TAATATTTAAAACATATGTC+AGG | - | chr2_1:21640021-21640040 | None:intergenic | 15.0% |
| !!! | TTGTTTTTCATCTTATAATA+AGG | + | chr2_1:21640285-21640304 | Msa0200940:intron | 15.0% |
| !! | AAGTAATATTAATGTTTCAT+TGG | - | chr2_1:21640470-21640489 | None:intergenic | 15.0% |
| !!! | GAAATGTAATTAATTTTGTA+TGG | - | chr2_1:21640607-21640626 | None:intergenic | 15.0% |
| !! | GAATCTATTTAAATATTACA+CGG | + | chr2_1:21640883-21640902 | Msa0200940:intron | 15.0% |
| !! | TTTATTTAATCACCTAAAAA+AGG | + | chr2_1:21640908-21640927 | Msa0200940:intron | 15.0% |
| !!! | TAAATCTTCTTTTTATAAAG+GGG | - | chr2_1:21640949-21640968 | None:intergenic | 15.0% |
| !! | CGATTATACAAAAAATAATT+TGG | + | chr2_1:21635207-21635226 | Msa0200940:intron | 15.0% |
| !! | ATACAAAAAATAATTTGGTT+TGG | + | chr2_1:21635212-21635231 | Msa0200940:intron | 15.0% |
| !!! | TACAAAAAATAATTTGGTTT+GGG | + | chr2_1:21635213-21635232 | Msa0200940:intron | 15.0% |
| !!! | TCATATTTATAAGAGATTTT+GGG | - | chr2_1:21635830-21635849 | None:intergenic | 15.0% |
| !!! | ATCATATTTATAAGAGATTT+TGG | - | chr2_1:21635831-21635850 | None:intergenic | 15.0% |
| !! | AAATCTCTTATAAATATGAT+CGG | + | chr2_1:21635831-21635850 | Msa0200940:intron | 15.0% |
| !! | ATCAAAGTTAAATGATTTAT+AGG | - | chr2_1:21635956-21635975 | None:intergenic | 15.0% |
| !! | TCAACAAAAGTTAATGTATA+TGG | - | chr2_1:21635807-21635826 | None:intergenic | 20.0% |
| !!! | TAGCATTCTAAAAATAACAA+TGG | - | chr2_1:21636587-21636606 | None:intergenic | 20.0% |
| !!! | TAAAAACATACATTTTGGAA+GGG | - | chr2_1:21636690-21636709 | None:intergenic | 20.0% |
| !!! | TTAAAAACATACATTTTGGA+AGG | - | chr2_1:21636691-21636710 | None:intergenic | 20.0% |
| !! | TAAAATCATTTATCACATTG+TGG | + | chr2_1:21636943-21636962 | Msa0200940:intron | 20.0% |
| !! | TATAAAAGTTGAACTATATG+TGG | - | chr2_1:21637161-21637180 | None:intergenic | 20.0% |
| !!! | ACCAATTTGAGTAAATTTTT+GGG | - | chr2_1:21637399-21637418 | None:intergenic | 20.0% |
| !!! | TACCAATTTGAGTAAATTTT+TGG | - | chr2_1:21637400-21637419 | None:intergenic | 20.0% |
| !! | ATATCATTTCTCTATGAAAA+AGG | + | chr2_1:21637605-21637624 | Msa0200940:intron | 20.0% |
| !! | TTAATTAATAGGTGATGTAT+AGG | + | chr2_1:21637868-21637887 | Msa0200940:intron | 20.0% |
| !!! | CAAGTAGTTCTTTTTTTTTT+TGG | - | chr2_1:21638134-21638153 | None:intergenic | 20.0% |
| !! | TCATGTATATAACAACATTA+TGG | + | chr2_1:21638235-21638254 | Msa0200940:intron | 20.0% |
| !! | CATGTATATAACAACATTAT+GGG | + | chr2_1:21638236-21638255 | Msa0200940:intron | 20.0% |
| !!! | GGAGTAGAAAAAATTATTTT+AGG | + | chr2_1:21638257-21638276 | Msa0200940:intron | 20.0% |
| !!! | TATTATATTGTTTGGCTTTT+AGG | + | chr2_1:21638580-21638599 | Msa0200940:intron | 20.0% |
| !!! | ATTATATTGTTTGGCTTTTA+GGG | + | chr2_1:21638581-21638600 | Msa0200940:intron | 20.0% |
| !!! | GATTTTATACAAGAAGAAAT+GGG | - | chr2_1:21638972-21638991 | None:intergenic | 20.0% |
| !!! | TGATTTTATACAAGAAGAAA+TGG | - | chr2_1:21638973-21638992 | None:intergenic | 20.0% |
| !!! | AACCAAGATTTTGATAATAT+AGG | + | chr2_1:21639212-21639231 | Msa0200940:intron | 20.0% |
| !!! | ACCAAGATTTTGATAATATA+GGG | + | chr2_1:21639213-21639232 | Msa0200940:intron | 20.0% |
| !!! | TCATAATTGAACTTTTTCTT+AGG | - | chr2_1:21639271-21639290 | None:intergenic | 20.0% |
| !!! | ACACCATAAATTATTTTCAT+TGG | - | chr2_1:21639521-21639540 | None:intergenic | 20.0% |
| !!! | TAACTATATTTTGAACTTAG+TGG | - | chr2_1:21639801-21639820 | None:intergenic | 20.0% |
| !!! | TTTTCATCTTATAATAAGGA+CGG | + | chr2_1:21640289-21640308 | Msa0200940:intron | 20.0% |
| !! | TCAACAAAAGTTAATGTATA+TGG | - | chr2_1:21635807-21635826 | None:intergenic | 20.0% |
| !!! | AGTAGAAAAGCATTTTATAG+CGG | + | chr2_1:21635272-21635291 | Msa0200940:intron | 25.0% |
| ! | TGATGAAACTAATCAGTAAT+TGG | - | chr2_1:21635712-21635731 | None:intergenic | 25.0% |
| !! | AAATCATTTAACTTTGATGC+AGG | + | chr2_1:21635958-21635977 | Msa0200940:intron | 25.0% |
| !!! | TTTTTTTCTCTTTACAGAGA+AGG | + | chr2_1:21636403-21636422 | Msa0200940:intron | 25.0% |
| !! | ATCTTCTAAAGATCATTGAT+CGG | + | chr2_1:21636494-21636513 | Msa0200940:intron | 25.0% |
| !!! | TTTTACTTTTCTGAATTGGA+TGG | + | chr2_1:21636517-21636536 | Msa0200940:intron | 25.0% |
| ! | AAATAACATAGAATCCTCAT+TGG | - | chr2_1:21636637-21636656 | None:intergenic | 25.0% |
| !!! | AAAAACATACATTTTGGAAG+GGG | - | chr2_1:21636689-21636708 | None:intergenic | 25.0% |
| ! | CATGAAAGTAATGCTTATAA+AGG | + | chr2_1:21636799-21636818 | Msa0200940:intron | 25.0% |
| !!! | ATAACATTTGAGTGTCATTT+TGG | + | chr2_1:21636822-21636841 | Msa0200940:intron | 25.0% |
| !! | ATGATAATGTCATGTGATAT+TGG | - | chr2_1:21636973-21636992 | None:intergenic | 25.0% |
| !! | AACATCAAAATAAGTTGAAG+TGG | - | chr2_1:21637025-21637044 | None:intergenic | 25.0% |
| ! | TCCCAAAAATTTACTCAAAT+TGG | + | chr2_1:21637395-21637414 | Msa0200940:intron | 25.0% |
| !! | ATTCGATTTTCATTCATGTT+AGG | + | chr2_1:21637957-21637976 | Msa0200940:intron | 25.0% |
| !! | TTCGATTTTCATTCATGTTA+GGG | + | chr2_1:21637958-21637977 | Msa0200940:intron | 25.0% |
| ! | TGAATGTTGTAAAACCAATA+TGG | - | chr2_1:21638025-21638044 | None:intergenic | 25.0% |
| !!! | GTAGTTCTTTTTTTTTTTGG+TGG | - | chr2_1:21638131-21638150 | None:intergenic | 25.0% |
| ! | TACTTGTAATTTCAATTCCA+TGG | + | chr2_1:21638148-21638167 | Msa0200940:intron | 25.0% |
| ! | TCTAAATGAAATAGAGATCA+TGG | + | chr2_1:21638191-21638210 | Msa0200940:intron | 25.0% |
| ! | TACATGAATAACACTATTGA+TGG | - | chr2_1:21638222-21638241 | None:intergenic | 25.0% |
| !!! | AGAAAAAATTATTTTAGGGG+AGG | + | chr2_1:21638262-21638281 | Msa0200940:intron | 25.0% |
| ! | ATATACACTAACATTGTCTT+TGG | - | chr2_1:21638563-21638582 | None:intergenic | 25.0% |
| ! | TTAAACTTAAATTTGCCAGA+AGG | + | chr2_1:21638604-21638623 | Msa0200940:intron | 25.0% |
| ! | TTCGCTTTCAATAATTTCTT+TGG | + | chr2_1:21638648-21638667 | Msa0200940:intron | 25.0% |
| !! | GTAATAAATGATGGAAATTC+AGG | + | chr2_1:21639098-21639117 | Msa0200940:intron | 25.0% |
| ! | TATATCGTCAAGAACAAAAT+AGG | + | chr2_1:21639142-21639161 | Msa0200940:intron | 25.0% |
| ! | ATATCGTCAAGAACAAAATA+GGG | + | chr2_1:21639143-21639162 | Msa0200940:intron | 25.0% |
| ! | CTTGGTTATTTAATGACATT+AGG | - | chr2_1:21639199-21639218 | None:intergenic | 25.0% |
| ! | ACCCTATATTATCAAAATCT+TGG | - | chr2_1:21639217-21639236 | None:intergenic | 25.0% |
| !!! | TGTTTTAAAACTTCAAGAGT+TGG | - | chr2_1:21639378-21639397 | None:intergenic | 25.0% |
| ! | GGACCAATGAAAATAATTTA+TGG | + | chr2_1:21639515-21639534 | Msa0200940:intron | 25.0% |
| ! | ATGGAGAAAACAAAATCAAA+TGG | - | chr2_1:21639675-21639694 | None:intergenic | 25.0% |
| !! | AACCTCTATTTGTTAAAAAG+TGG | - | chr2_1:21639747-21639766 | None:intergenic | 25.0% |
| ! | TTACCATCTAGATATAACTT+TGG | - | chr2_1:21639778-21639797 | None:intergenic | 25.0% |
| !! | AGTATCGGATTTCATATTAT+AGG | - | chr2_1:21639824-21639843 | None:intergenic | 25.0% |
| !!! | ATTTTAAGACAAAGGAGTAT+CGG | - | chr2_1:21639839-21639858 | None:intergenic | 25.0% |
| !!! | ATTAGTTGGGTTGATTTTAA+TGG | + | chr2_1:21639899-21639918 | Msa0200940:intron | 25.0% |
| ! | AAGTGACATATAATTATGGA+CGG | - | chr2_1:21640405-21640424 | None:intergenic | 25.0% |
| ! | GTCAAAGTGACATATAATTA+TGG | - | chr2_1:21640409-21640428 | None:intergenic | 25.0% |
| ! | GATGAAAGATTCATATAGTT+TGG | + | chr2_1:21640643-21640662 | Msa0200940:intron | 25.0% |
| !! | ATTCATATAGTTTGGAATGA+AGG | + | chr2_1:21640651-21640670 | Msa0200940:intron | 25.0% |
| !! | TTCATATAGTTTGGAATGAA+GGG | + | chr2_1:21640652-21640671 | Msa0200940:intron | 25.0% |
| ! | TATTACTCCATTTGTCTATT+TGG | - | chr2_1:21640789-21640808 | None:intergenic | 25.0% |
| !!! | AGTAGAAAAGCATTTTATAG+CGG | + | chr2_1:21635272-21635291 | Msa0200940:intron | 25.0% |
| ! | TGATGAAACTAATCAGTAAT+TGG | - | chr2_1:21635712-21635731 | None:intergenic | 25.0% |
| !! | AAATCATTTAACTTTGATGC+AGG | + | chr2_1:21635958-21635977 | Msa0200940:intron | 25.0% |
| !!! | TTTCAGTTACCTTTGTTATT+AGG | + | chr2_1:21642171-21642190 | Msa0200940:intron | 25.0% |
| !!! | TTCAGTTACCTTTGTTATTA+GGG | + | chr2_1:21642172-21642191 | Msa0200940:intron | 25.0% |
| !!! | ATTTTTTTTCTCTACAGAGA+AGG | + | chr2_1:21642391-21642410 | Msa0200940:intron | 25.0% |
| TATAGCGGTTAGTAAATTCA+CGG | + | chr2_1:21635287-21635306 | Msa0200940:intron | 30.0% | |
| AACTCATTCTCTCACAAAAT+TGG | - | chr2_1:21635478-21635497 | None:intergenic | 30.0% | |
| TTGATTGATTGAACCATTGA+AGG | + | chr2_1:21635499-21635518 | Msa0200940:intron | 30.0% | |
| TGATTGATTGAACCATTGAA+GGG | + | chr2_1:21635500-21635519 | Msa0200940:intron | 30.0% | |
| ATTAATAGAACACCCTTCAA+TGG | - | chr2_1:21635515-21635534 | None:intergenic | 30.0% | |
| TAAAAGAGAAGAACCTACAT+GGG | - | chr2_1:21635640-21635659 | None:intergenic | 30.0% | |
| GTAACTGAAAATCTTACAGT+TGG | - | chr2_1:21636172-21636191 | None:intergenic | 30.0% | |
| TTTCAGTTACCTTTGTTACT+AGG | + | chr2_1:21636182-21636201 | Msa0200940:intron | 30.0% | |
| TTCAGTTACCTTTGTTACTA+GGG | + | chr2_1:21636183-21636202 | Msa0200940:intron | 30.0% | |
| CTTATTGAGACGTAAATTAG+TGG | - | chr2_1:21636230-21636249 | None:intergenic | 30.0% | |
| TATGAATCTTTGCATCCAAA+TGG | + | chr2_1:21636314-21636333 | Msa0200940:intron | 30.0% | |
| TGAAACCAGTTAAATCCATT+TGG | - | chr2_1:21636332-21636351 | None:intergenic | 30.0% | |
| ! | GTATCAAGTTCTGATACTTA+AGG | + | chr2_1:21636454-21636473 | Msa0200940:intron | 30.0% |
| !! | TCGGTTTTACTTTTCTGAAT+TGG | + | chr2_1:21636513-21636532 | Msa0200940:intron | 30.0% |
| ! | ATCAAAATAAGTTGAAGTGG+CGG | - | chr2_1:21637022-21637041 | None:intergenic | 30.0% |
| GGTAGAATAGACATGTATAA+TGG | - | chr2_1:21637054-21637073 | None:intergenic | 30.0% | |
| ACTTAATCATCTCATCTATC+TGG | + | chr2_1:21637679-21637698 | Msa0200940:intron | 30.0% | |
| GAAGGATGAAAATAGTCTAT+TGG | + | chr2_1:21637716-21637735 | Msa0200940:intron | 30.0% | |
| !! | TTTTTGAAAGATCATGCCAT+TGG | - | chr2_1:21637908-21637927 | None:intergenic | 30.0% |
| GAATCAATTTATCATGCCAT+TGG | - | chr2_1:21637941-21637960 | None:intergenic | 30.0% | |
| AACGGTAGAATATAGTGATT+TGG | - | chr2_1:21638102-21638121 | None:intergenic | 30.0% | |
| CTCTGAGTACACAAAAAATA+AGG | - | chr2_1:21638492-21638511 | None:intergenic | 30.0% | |
| !!! | CTTATTTTTTGTGTACTCAG+AGG | + | chr2_1:21638490-21638509 | Msa0200940:intron | 30.0% |
| TATCTGGATAACTAATTCGT+AGG | - | chr2_1:21638519-21638538 | None:intergenic | 30.0% | |
| ATTGTCTTTGGATTGTTGAA+AGG | - | chr2_1:21638551-21638570 | None:intergenic | 30.0% | |
| ! | AATGCTTACTTGACTTGATT+TGG | - | chr2_1:21638875-21638894 | None:intergenic | 30.0% |
| ! | AGAAGATCTGTGAAATGTTT+TGG | + | chr2_1:21639020-21639039 | Msa0200940:intron | 30.0% |
| TTTCTGAGTTTATGTTCTGT+AGG | + | chr2_1:21639054-21639073 | Msa0200940:intron | 30.0% | |
| AAATAGAACAACTCTATGTG+TGG | - | chr2_1:21639408-21639427 | None:intergenic | 30.0% | |
| CTCAAACTCAAATATCTCAA+GGG | - | chr2_1:21639437-21639456 | None:intergenic | 30.0% | |
| ACTCAAACTCAAATATCTCA+AGG | - | chr2_1:21639438-21639457 | None:intergenic | 30.0% | |
| ! | CAACAACATTTTGCATCAAA+TGG | - | chr2_1:21639465-21639484 | None:intergenic | 30.0% |
| TTTATGGTGTATAAGCTTTG+TGG | + | chr2_1:21639531-21639550 | Msa0200940:intron | 30.0% | |
| TGTATCTATAAAATACCACC+AGG | - | chr2_1:21639573-21639592 | None:intergenic | 30.0% | |
| GAATTGATTGAAATGCTTGA+AGG | - | chr2_1:21639633-21639652 | None:intergenic | 30.0% | |
| !!! | CTCCACTTTTTAACAAATAG+AGG | + | chr2_1:21639742-21639761 | Msa0200940:intron | 30.0% |
| ! | GTAGTTAAGTTGTATGAAAC+AGG | + | chr2_1:21639972-21639991 | Msa0200940:intron | 30.0% |
| TTCACAACTTTCTTTCTACA+AGG | + | chr2_1:21640196-21640215 | Msa0200940:intron | 30.0% | |
| TCACAACTTTCTTTCTACAA+GGG | + | chr2_1:21640197-21640216 | Msa0200940:intron | 30.0% | |
| TGTAAAGCGGCATATAATTT+AGG | - | chr2_1:21640444-21640463 | None:intergenic | 30.0% | |
| GTTTCATTGGTATTGTAAAG+CGG | - | chr2_1:21640457-21640476 | None:intergenic | 30.0% | |
| ! | GAGAGCGTAATAAATAGTTA+AGG | - | chr2_1:21640504-21640523 | None:intergenic | 30.0% |
| TAGACAAATGGAGTAATACT+AGG | + | chr2_1:21640791-21640810 | Msa0200940:intron | 30.0% | |
| AACTCATTCTCTCACAAAAT+TGG | - | chr2_1:21635478-21635497 | None:intergenic | 30.0% | |
| TTGATTGATTGAACCATTGA+AGG | + | chr2_1:21635499-21635518 | Msa0200940:intron | 30.0% | |
| TGATTGATTGAACCATTGAA+GGG | + | chr2_1:21635500-21635519 | Msa0200940:intron | 30.0% | |
| ATTAATAGAACACCCTTCAA+TGG | - | chr2_1:21635515-21635534 | None:intergenic | 30.0% | |
| TAAAAGAGAAGAACCTACAT+GGG | - | chr2_1:21635640-21635659 | None:intergenic | 30.0% | |
| AAGGTAACTGAAAATCTTAC+AGG | - | chr2_1:21636175-21636194 | None:intergenic | 30.0% | |
| CTTATTGAGCTGTAAATTAG+TGG | - | chr2_1:21642219-21642238 | None:intergenic | 30.0% | |
| TATGAATCTTTGCATCCAAA+TGG | + | chr2_1:21636314-21636333 | Msa0200940:intron | 30.0% | |
| TGAAACCAGTTAAATCCATT+TGG | - | chr2_1:21636332-21636351 | None:intergenic | 30.0% | |
| ! | ATCGGCTTATAGTTTCAGAA+AGG | - | chr2_1:21635191-21635210 | None:intergenic | 35.0% |
| !! | AGGTTTTTGAAAACCCATGT+AGG | + | chr2_1:21635624-21635643 | Msa0200940:intron | 35.0% |
| CTAAAAGAGAAGAACCTACA+TGG | - | chr2_1:21635641-21635660 | None:intergenic | 35.0% | |
| ! | CATGTAGGTTCTTCTCTTTT+AGG | + | chr2_1:21635639-21635658 | Msa0200940:intron | 35.0% |
| CCATTGAATAATCTCGTACT+GGG | - | chr2_1:21636036-21636055 | None:intergenic | 35.0% | |
| TCCATTGAATAATCTCGTAC+TGG | - | chr2_1:21636037-21636056 | None:intergenic | 35.0% | |
| ! | TGTGTAGTTTTCTTGCTTCT+TGG | - | chr2_1:21636072-21636091 | None:intergenic | 35.0% |
| AGAAAACTACACAAGAGTCT+TGG | + | chr2_1:21636079-21636098 | Msa0200940:CDS | 35.0% | |
| TACGTCTCAATAAGATGAGA+TGG | + | chr2_1:21636236-21636255 | Msa0200940:intron | 35.0% | |
| ! | TGCATCCAAATGGATTTAAC+TGG | + | chr2_1:21636324-21636343 | Msa0200940:intron | 35.0% |
| TTAAACTCCATTCTCCAATG+AGG | + | chr2_1:21636620-21636639 | Msa0200940:intron | 35.0% | |
| ATAGAATCCTCATTGGAGAA+TGG | - | chr2_1:21636630-21636649 | None:intergenic | 35.0% | |
| CATGTCTATTCTACCACTTA+TGG | + | chr2_1:21637059-21637078 | Msa0200940:intron | 35.0% | |
| ! | TGGCTTGTGGTAATTAAATC+GGG | - | chr2_1:21637117-21637136 | None:intergenic | 35.0% |
| ! | GTGGCTTGTGGTAATTAAAT+CGG | - | chr2_1:21637118-21637137 | None:intergenic | 35.0% |
| TTGAACTATATGTGGCTAAG+AGG | - | chr2_1:21637153-21637172 | None:intergenic | 35.0% | |
| CACAACAAAATATGACAGAG+TGG | + | chr2_1:21637372-21637391 | Msa0200940:intron | 35.0% | |
| ATCTCATCTATCTGGAAACT+TGG | + | chr2_1:21637687-21637706 | Msa0200940:intron | 35.0% | |
| AGAAGGTCATTTGGTATACA+TGG | - | chr2_1:21637749-21637768 | None:intergenic | 35.0% | |
| GGATGTAAGAATCAAACCAA+TGG | + | chr2_1:21637889-21637908 | Msa0200940:intron | 35.0% | |
| CATTCATGTTAGGGTTCAAT+CGG | + | chr2_1:21637967-21637986 | Msa0200940:intron | 35.0% | |
| CGATCTCTATTAGTCCATAT+TGG | + | chr2_1:21638008-21638027 | Msa0200940:intron | 35.0% | |
| !!! | TTTTTTTGGTGGAGTCAGAA+CGG | - | chr2_1:21638120-21638139 | None:intergenic | 35.0% |
| TTTCAATTCCATGGATGATG+TGG | + | chr2_1:21638157-21638176 | Msa0200940:intron | 35.0% | |
| ACACAAAAAATAAGGCCACA+GGG | - | chr2_1:21638484-21638503 | None:intergenic | 35.0% | |
| TACACAAAAAATAAGGCCAC+AGG | - | chr2_1:21638485-21638504 | None:intergenic | 35.0% | |
| TTGGATTGTTGAAAGGTTGT+GGG | - | chr2_1:21638544-21638563 | None:intergenic | 35.0% | |
| TTTGGATTGTTGAAAGGTTG+TGG | - | chr2_1:21638545-21638564 | None:intergenic | 35.0% | |
| CAGATAATCCCCAATTGTTT+GGG | - | chr2_1:21638687-21638706 | None:intergenic | 35.0% | |
| AATGTAAAGTTTGACACCAG+GGG | - | chr2_1:21638848-21638867 | None:intergenic | 35.0% | |
| CAATGTAAAGTTTGACACCA+GGG | - | chr2_1:21638849-21638868 | None:intergenic | 35.0% | |
| TCAATGTAAAGTTTGACACC+AGG | - | chr2_1:21638850-21638869 | None:intergenic | 35.0% | |
| CTAATCCTGCTTCTGATAAT+TGG | + | chr2_1:21638916-21638935 | Msa0200940:intron | 35.0% | |
| !!! | TAGGGTCATTTTTCATCCAA+TGG | + | chr2_1:21639231-21639250 | Msa0200940:intron | 35.0% |
| GGCGTTAATTTAGAAACCAT+TGG | - | chr2_1:21639250-21639269 | None:intergenic | 35.0% | |
| !! | ATAAGCTTTGTGGATTAGCT+TGG | + | chr2_1:21639541-21639560 | Msa0200940:intron | 35.0% |
| !! | TCATTGATTCCAGACATTTC+TGG | + | chr2_1:21639597-21639616 | Msa0200940:intron | 35.0% |
| GCTCCAAAGTTATATCTAGA+TGG | + | chr2_1:21639772-21639791 | Msa0200940:intron | 35.0% | |
| GACAACTCCAAATAGACAAA+TGG | + | chr2_1:21640779-21640798 | Msa0200940:intron | 35.0% | |
| !! | ATATGTGATTGGCCTTGATA+GGG | - | chr2_1:21641053-21641072 | None:intergenic | 35.0% |
| !! | TATATGTGATTGGCCTTGAT+AGG | - | chr2_1:21641054-21641073 | None:intergenic | 35.0% |
| ! | ACTTGAGAGGTATATGTGAT+TGG | - | chr2_1:21641064-21641083 | None:intergenic | 35.0% |
| !! | TTTGAGTTGTTGAACTTGAG+AGG | - | chr2_1:21641077-21641096 | None:intergenic | 35.0% |
| !! | AAACTCTGAAATCAGTGTCA+TGG | + | chr2_1:21641095-21641114 | Msa0200940:intron | 35.0% |
| ! | ATCGGCTTATAGTTTCAGAA+AGG | - | chr2_1:21635191-21635210 | None:intergenic | 35.0% |
| TATAGCGGCCAATAAATTCA+CGG | + | chr2_1:21641274-21641293 | Msa0200940:intron | 35.0% | |
| AATGTCGAACCTGCAAAAAA+AGG | + | chr2_1:21635439-21635458 | Msa0200940:intron | 35.0% | |
| !! | AGGTTTTTGAAAACCCATGT+AGG | + | chr2_1:21635624-21635643 | Msa0200940:intron | 35.0% |
| CTAAAAGAGAAGAACCTACA+TGG | - | chr2_1:21635641-21635660 | None:intergenic | 35.0% | |
| ! | CATGTAGGTTCTTCTCTTTT+AGG | + | chr2_1:21635639-21635658 | Msa0200940:intron | 35.0% |
| CCATTGAATAATCTCGTACT+GGG | - | chr2_1:21636036-21636055 | None:intergenic | 35.0% | |
| TCCATTGAATAATCTCGTAC+TGG | - | chr2_1:21636037-21636056 | None:intergenic | 35.0% | |
| ! | TGTGTAGTTTTCTTGCTTCT+TGG | - | chr2_1:21636072-21636091 | None:intergenic | 35.0% |
| AGAAAACTACACAAGAGTCT+TGG | + | chr2_1:21636079-21636098 | Msa0200940:CDS | 35.0% | |
| GTAACTGAAAATCTTACAGG+TGG | - | chr2_1:21642161-21642180 | None:intergenic | 35.0% | |
| !! | AGTTACCTTTGTTATTAGGG+CGG | + | chr2_1:21642175-21642194 | Msa0200940:intron | 35.0% |
| TACAGCTCAATAAGATGAGA+TGG | + | chr2_1:21642225-21642244 | Msa0200940:intron | 35.0% | |
| ! | TGCATCCAAATGGATTTAAC+TGG | + | chr2_1:21636324-21636343 | Msa0200940:intron | 35.0% |
| ! | TTTTGCAGGTTCGACATTAG+TGG | - | chr2_1:21635437-21635456 | None:intergenic | 40.0% |
| AAGTAGAGCCATTACAAGCA+GGG | - | chr2_1:21635587-21635606 | None:intergenic | 40.0% | |
| CCCAGTACGAGATTATTCAA+TGG | + | chr2_1:21636033-21636052 | Msa0200940:CDS | 40.0% | |
| !! | ACACAAGAGTCTTGGTAATG+AGG | + | chr2_1:21636087-21636106 | Msa0200940:CDS | 40.0% |
| AGTTACCTTTGTTACTAGGG+TGG | + | chr2_1:21636186-21636205 | Msa0200940:intron | 40.0% | |
| AATGTGATTGCTTACGACTG+AGG | + | chr2_1:21636771-21636790 | Msa0200940:intron | 40.0% | |
| ATGTGATTGCTTACGACTGA+GGG | + | chr2_1:21636772-21636791 | Msa0200940:intron | 40.0% | |
| TTGACCAATGTAACGTGACA+TGG | - | chr2_1:21636851-21636870 | None:intergenic | 40.0% | |
| CAACGATAAGTAGCCATAAG+TGG | - | chr2_1:21637075-21637094 | None:intergenic | 40.0% | |
| ! | ATTACCACAAGCCACTTTCT+TGG | + | chr2_1:21637123-21637142 | Msa0200940:intron | 40.0% |
| !! | TAAGAGGAGTACCAAGAAAG+TGG | - | chr2_1:21637137-21637156 | None:intergenic | 40.0% |
| GCGAGTATGAAAGAGAAAGT+TGG | + | chr2_1:21637565-21637584 | Msa0200940:intron | 40.0% | |
| CTGGAAACTTGGCAATATGA+AGG | + | chr2_1:21637698-21637717 | Msa0200940:intron | 40.0% | |
| ATAATTAAGCGAGCAGCAGA+AGG | - | chr2_1:21637766-21637785 | None:intergenic | 40.0% | |
| GGGGAGGATTAATACTTGAT+TGG | + | chr2_1:21638278-21638297 | Msa0200940:intron | 40.0% | |
| !! | AAGAGGATTGGTTTCTGAGA+AGG | - | chr2_1:21638456-21638475 | None:intergenic | 40.0% |
| TCAGAAACCAATCCTCTTCA+TGG | + | chr2_1:21638458-21638477 | Msa0200940:intron | 40.0% | |
| TGAAAGGTTGTGGGATTATC+TGG | - | chr2_1:21638535-21638554 | None:intergenic | 40.0% | |
| TTTGCCAGAAGGCTTGATTA+CGG | + | chr2_1:21638615-21638634 | Msa0200940:intron | 40.0% | |
| TGATGTTCGTCCCAAACAAT+TGG | + | chr2_1:21638674-21638693 | Msa0200940:intron | 40.0% | |
| GATGTTCGTCCCAAACAATT+GGG | + | chr2_1:21638675-21638694 | Msa0200940:intron | 40.0% | |
| ATGTTCGTCCCAAACAATTG+GGG | + | chr2_1:21638676-21638695 | Msa0200940:intron | 40.0% | |
| CCAGATAATCCCCAATTGTT+TGG | - | chr2_1:21638688-21638707 | None:intergenic | 40.0% | |
| CCAAACAATTGGGGATTATC+TGG | + | chr2_1:21638685-21638704 | Msa0200940:intron | 40.0% | |
| CAAGAACAAAATAGGGTAGC+TGG | + | chr2_1:21639150-21639169 | Msa0200940:intron | 40.0% | |
| !!! | AATAGGGTAGCTGGTTTTCA+AGG | + | chr2_1:21639159-21639178 | Msa0200940:intron | 40.0% |
| ! | GAGCCATGTGGATTGTAAAA+AGG | + | chr2_1:21639494-21639513 | Msa0200940:intron | 40.0% |
| ! | GGTCCTTTTTACAATCCACA+TGG | - | chr2_1:21639500-21639519 | None:intergenic | 40.0% |
| GATTGAAATGCTTGAAGGAG+TGG | - | chr2_1:21639628-21639647 | None:intergenic | 40.0% | |
| CCTTGATAGGGTTATTTGAC+AGG | - | chr2_1:21641041-21641060 | None:intergenic | 40.0% | |
| CCTGTCAAATAACCCTATCA+AGG | + | chr2_1:21641038-21641057 | Msa0200940:intron | 40.0% | |
| CTGAAATCAGTGTCATGGAA+CGG | + | chr2_1:21641100-21641119 | Msa0200940:intron | 40.0% | |
| GCATGACTCCGTGAATTTAT+TGG | - | chr2_1:21641285-21641304 | None:intergenic | 40.0% | |
| ! | TTTTGCAGGTTCGACATTAG+TGG | - | chr2_1:21635437-21635456 | None:intergenic | 40.0% |
| AAGAAGAGCCATTACAAGCA+GGG | - | chr2_1:21641575-21641594 | None:intergenic | 40.0% | |
| CCCAGTACGAGATTATTCAA+TGG | + | chr2_1:21636033-21636052 | Msa0200940:CDS | 40.0% | |
| !! | ACACAAGAGTCTTGGTAATG+AGG | + | chr2_1:21636087-21636106 | Msa0200940:CDS | 40.0% |
| ACCATCCGATCAAGATCTGA+CGG | + | chr2_1:21635411-21635430 | Msa0200940:intron | 45.0% | |
| !!! | TACGCAGTCGCTTTTTTTGC+AGG | - | chr2_1:21635451-21635470 | None:intergenic | 45.0% |
| AACTATGCCCCTGCTTGTAA+TGG | + | chr2_1:21635576-21635595 | Msa0200940:intron | 45.0% | |
| AGTAGAGCCATTACAAGCAG+GGG | - | chr2_1:21635586-21635605 | None:intergenic | 45.0% | |
| CAAGTAGAGCCATTACAAGC+AGG | - | chr2_1:21635588-21635607 | None:intergenic | 45.0% | |
| TTTGGGGAATGGGATCAGAA+GGG | + | chr2_1:21636010-21636029 | Msa0200940:CDS | 45.0% | |
| !! | CAAGAGTCTTGGTAATGAGG+AGG | + | chr2_1:21636090-21636109 | Msa0200940:CDS | 45.0% |
| ! | TGGTAATGAGGAGGAACTCA+AGG | + | chr2_1:21636099-21636118 | Msa0200940:CDS | 45.0% |
| AGGAACTCAAGGCTTCATTC+CGG | + | chr2_1:21636110-21636129 | Msa0200940:CDS | 45.0% | |
| TCTCTCCACCCTAGTAACAA+AGG | - | chr2_1:21636194-21636213 | None:intergenic | 45.0% | |
| GAAGGAAGAGCTTCATGAAG+TGG | + | chr2_1:21636421-21636440 | Msa0200940:intron | 45.0% | |
| GTGTCCATGTCACGTTACAT+TGG | + | chr2_1:21636844-21636863 | Msa0200940:intron | 45.0% | |
| AAGTTGAAGTGGCGGTGTTT+GGG | - | chr2_1:21637014-21637033 | None:intergenic | 45.0% | |
| ! | TAAGTTGAAGTGGCGGTGTT+TGG | - | chr2_1:21637015-21637034 | None:intergenic | 45.0% |
| AGTACCAAGAAAGTGGCTTG+TGG | - | chr2_1:21637130-21637149 | None:intergenic | 45.0% | |
| TCGTCTTACCACATCATCCA+TGG | - | chr2_1:21638168-21638187 | None:intergenic | 45.0% | |
| ACTTCCGTAATCAAGCCTTC+TGG | - | chr2_1:21638622-21638641 | None:intergenic | 45.0% | |
| !! | GGCTTGATTACGGAAGTGTT+TGG | + | chr2_1:21638625-21638644 | Msa0200940:intron | 45.0% |
| GTGAGCCAATTATCAGAAGC+AGG | - | chr2_1:21638924-21638943 | None:intergenic | 45.0% | |
| TTGTCACTACTTGAGCCATG+TGG | + | chr2_1:21639482-21639501 | Msa0200940:intron | 45.0% | |
| GTGGTTCTTCCAGAAATGTC+TGG | - | chr2_1:21639609-21639628 | None:intergenic | 45.0% | |
| TGTCATGGAACGGCATACAA+AGG | + | chr2_1:21641110-21641129 | Msa0200940:intron | 45.0% | |
| ACCATCCGATCAAGATCTGA+CGG | + | chr2_1:21635411-21635430 | Msa0200940:intron | 45.0% | |
| AACTATGCCCCTGCTTGTAA+TGG | + | chr2_1:21635576-21635595 | Msa0200940:intron | 45.0% | |
| AGAAGAGCCATTACAAGCAG+GGG | - | chr2_1:21641574-21641593 | None:intergenic | 45.0% | |
| CAAGAAGAGCCATTACAAGC+AGG | - | chr2_1:21641576-21641595 | None:intergenic | 45.0% | |
| TTTGGGGAATGGGATCAGAA+GGG | + | chr2_1:21636010-21636029 | Msa0200940:CDS | 45.0% | |
| !! | CAAGAGTCTTGGTAATGAGG+AGG | + | chr2_1:21636090-21636109 | Msa0200940:CDS | 45.0% |
| ! | TGGTAATGAGGAGGAACTCA+AGG | + | chr2_1:21636099-21636118 | Msa0200940:CDS | 45.0% |
| AGGAACTCAAGGCTTCATTC+CGG | + | chr2_1:21636110-21636129 | Msa0200940:CDS | 45.0% | |
| TCTCTCCGCCCTAATAACAA+AGG | - | chr2_1:21642183-21642202 | None:intergenic | 45.0% | |
| GAAGGAAGAGCTTCATGAAG+TGG | + | chr2_1:21636421-21636440 | Msa0200940:intron | 45.0% | |
| !! | AAAATAATCTATTTAATATA+GGG | - | chr2_1:21637205-21637224 | None:intergenic | 5.0% |
| !!! | TTTTAATTTTTTTTTTTTGA+GGG | - | chr2_1:21638058-21638077 | None:intergenic | 5.0% |
| !!! | TTTTTAATTTTTTTTTTTTG+AGG | - | chr2_1:21638059-21638078 | None:intergenic | 5.0% |
| AGTGGCCGTCAGATCTTGAT+CGG | - | chr2_1:21635419-21635438 | None:intergenic | 50.0% | |
| GTTTGGGGAATGGGATCAGA+AGG | + | chr2_1:21636009-21636028 | Msa0200940:CDS | 50.0% | |
| GCGGTGTTTGGGTGACATTA+TGG | - | chr2_1:21637003-21637022 | None:intergenic | 50.0% | |
| !!! | GGTAGCTGGTTTTCAAGGAG+TGG | + | chr2_1:21639164-21639183 | Msa0200940:intron | 50.0% |
| !! | GGATTAGCTTGGCGAATTCC+TGG | + | chr2_1:21639552-21639571 | Msa0200940:intron | 50.0% |
| ! | TTAGCTTGGCGAATTCCTGG+TGG | + | chr2_1:21639555-21639574 | Msa0200940:intron | 50.0% |
| AGTGGCCGTCAGATCTTGAT+CGG | - | chr2_1:21635419-21635438 | None:intergenic | 50.0% | |
| !!! | ACGCAGTCGCCTTTTTTTGC+AGG | - | chr2_1:21641438-21641457 | None:intergenic | 50.0% |
| GTTTGGGGAATGGGATCAGA+AGG | + | chr2_1:21636009-21636028 | Msa0200940:CDS | 50.0% | |
| GCCGTCAGATCTTGATCGGA+TGG | - | chr2_1:21635415-21635434 | None:intergenic | 55.0% | |
| TGATCCCATTCCCCAAACCG+CGG | - | chr2_1:21636007-21636026 | None:intergenic | 55.0% | |
| ! | TGCGTTGACGCTGAATGTGC+CGG | - | chr2_1:21636132-21636151 | None:intergenic | 55.0% |
| GCGAGCAGCAGAAGGTCATT+TGG | - | chr2_1:21637758-21637777 | None:intergenic | 55.0% | |
| CACAGGGCCATGAAGAGGAT+TGG | - | chr2_1:21638468-21638487 | None:intergenic | 55.0% | |
| CAATCCTCTTCATGGCCCTG+TGG | + | chr2_1:21638466-21638485 | Msa0200940:intron | 55.0% | |
| GCCGTCAGATCTTGATCGGA+TGG | - | chr2_1:21635415-21635434 | None:intergenic | 55.0% | |
| TGATCCCATTCCCCAAACCG+CGG | - | chr2_1:21636007-21636026 | None:intergenic | 55.0% | |
| ! | TGCGTTGACGCTGAATGTGC+CGG | - | chr2_1:21636132-21636151 | None:intergenic | 55.0% |
| ATTCCCCAAACCGCGGCACT+GGG | - | chr2_1:21636000-21636019 | None:intergenic | 60.0% | |
| ! | AGTGCCGCGGTTTGGGGAAT+GGG | + | chr2_1:21636000-21636019 | Msa0200940:CDS | 60.0% |
| AAGGCCACAGGGCCATGAAG+AGG | - | chr2_1:21638473-21638492 | None:intergenic | 60.0% | |
| ATTCCCCAAACCGCGGCACT+GGG | - | chr2_1:21636000-21636019 | None:intergenic | 60.0% | |
| ! | AGTGCCGCGGTTTGGGGAAT+GGG | + | chr2_1:21636000-21636019 | Msa0200940:CDS | 60.0% |
| TTCCCCAAACCGCGGCACTG+GGG | - | chr2_1:21635999-21636018 | None:intergenic | 65.0% | |
| CATTCCCCAAACCGCGGCAC+TGG | - | chr2_1:21636001-21636020 | None:intergenic | 65.0% | |
| ! | CAGTGCCGCGGTTTGGGGAA+TGG | + | chr2_1:21635999-21636018 | Msa0200940:CDS | 65.0% |
| TTCCCCAAACCGCGGCACTG+GGG | - | chr2_1:21635999-21636018 | None:intergenic | 65.0% | |
| CATTCCCCAAACCGCGGCAC+TGG | - | chr2_1:21636001-21636020 | None:intergenic | 65.0% | |
| ! | CAGTGCCGCGGTTTGGGGAA+TGG | + | chr2_1:21635999-21636018 | Msa0200940:CDS | 65.0% |
| ! | ACCGCGGCACTGGGGGACAA+GGG | - | chr2_1:21635991-21636010 | None:intergenic | 70.0% |
| ! | AACCGCGGCACTGGGGGACA+AGG | - | chr2_1:21635992-21636011 | None:intergenic | 70.0% |
| TGTCCCCCAGTGCCGCGGTT+TGG | + | chr2_1:21635992-21636011 | Msa0200940:CDS | 70.0% | |
| GTCCCCCAGTGCCGCGGTTT+GGG | + | chr2_1:21635993-21636012 | Msa0200940:CDS | 70.0% | |
| TCCCCCAGTGCCGCGGTTTG+GGG | + | chr2_1:21635994-21636013 | Msa0200940:CDS | 70.0% | |
| ! | TCCCCAAACCGCGGCACTGG+GGG | - | chr2_1:21635998-21636017 | None:intergenic | 70.0% |
| ! | ACCGCGGCACTGGGGGACAA+GGG | - | chr2_1:21635991-21636010 | None:intergenic | 70.0% |
| ! | AACCGCGGCACTGGGGGACA+AGG | - | chr2_1:21635992-21636011 | None:intergenic | 70.0% |
| TGTCCCCCAGTGCCGCGGTT+TGG | + | chr2_1:21635992-21636011 | Msa0200940:CDS | 70.0% | |
| GTCCCCCAGTGCCGCGGTTT+GGG | + | chr2_1:21635993-21636012 | Msa0200940:CDS | 70.0% | |
| TCCCCCAGTGCCGCGGTTTG+GGG | + | chr2_1:21635994-21636013 | Msa0200940:CDS | 70.0% | |
| ! | TCCCCAAACCGCGGCACTGG+GGG | - | chr2_1:21635998-21636017 | None:intergenic | 70.0% |
| GCCCTTGTCCCCCAGTGCCG+CGG | + | chr2_1:21635987-21636006 | Msa0200940:CDS | 75.0% | |
| TGCGTGCGCGCACACACCCC+TGG | + | chr2_1:21638829-21638848 | Msa0200940:intron | 75.0% | |
| GCCCTTGTCCCCCAGTGCCG+CGG | + | chr2_1:21635987-21636006 | Msa0200940:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 21635127 | 21642455 | 21635127 | ID=Msa0200940;Name=Msa0200940 |
| chr2_1 | mRNA | 21635127 | 21642455 | 21635127 | ID=Msa0200940-mRNA-1;Parent=Msa0200940;Name=Msa0200940-mRNA-1;_AED=0.14;_eAED=0.14;_QI=0|0|0|0.75|1|1|4|0|151 |
| chr2_1 | exon | 21635127 | 21635144 | 21635127 | ID=Msa0200940-mRNA-1:exon:8708;Parent=Msa0200940-mRNA-1 |
| chr2_1 | exon | 21635980 | 21636174 | 21635980 | ID=Msa0200940-mRNA-1:exon:8709;Parent=Msa0200940-mRNA-1 |
| chr2_1 | exon | 21641969 | 21642163 | 21641969 | ID=Msa0200940-mRNA-1:exon:8710;Parent=Msa0200940-mRNA-1 |
| chr2_1 | exon | 21642408 | 21642455 | 21642408 | ID=Msa0200940-mRNA-1:exon:8711;Parent=Msa0200940-mRNA-1 |
| chr2_1 | CDS | 21635127 | 21635144 | 21635127 | ID=Msa0200940-mRNA-1:cds;Parent=Msa0200940-mRNA-1 |
| chr2_1 | CDS | 21635980 | 21636174 | 21635980 | ID=Msa0200940-mRNA-1:cds;Parent=Msa0200940-mRNA-1 |
| chr2_1 | CDS | 21641969 | 21642163 | 21641969 | ID=Msa0200940-mRNA-1:cds;Parent=Msa0200940-mRNA-1 |
| chr2_1 | CDS | 21642408 | 21642455 | 21642408 | ID=Msa0200940-mRNA-1:cds;Parent=Msa0200940-mRNA-1 |
| Gene Sequence |
| Protein sequence |
