Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0208030 | XP_013463905.2 | 96.763 | 278 | 5 | 1 | 1 | 278 | 1 | 274 | 0.0 | 548 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0208030 | sp|O22227|MIZ1_ARATH | 52.247 | 178 | 73 | 4 | 110 | 278 | 123 | 297 | 1.70e-58 | 191 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0208030 | A0A396JCM5 | 96.763 | 278 | 5 | 1 | 1 | 278 | 1 | 274 | 0.0 | 548 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0174450 | Msa0208030 | 0.825528 | 4.463613e-54 | -8.615850e-47 |
| Msa0208030 | Msa0208140 | 0.884360 | 2.049659e-71 | -8.615850e-47 |
| Msa0208030 | Msa0251710 | 0.803346 | 3.642267e-49 | -8.615850e-47 |
| Msa0208030 | Msa0266180 | 0.801539 | 8.583111e-49 | -8.615850e-47 |
| Msa0208030 | Msa0287740 | 0.802147 | 6.438530e-49 | -8.615850e-47 |
| Msa0208030 | Msa0304570 | 0.804360 | 2.242192e-49 | -8.615850e-47 |
| Msa0208030 | Msa0304680 | 0.810716 | 1.003625e-50 | -8.615850e-47 |
| Msa0208030 | Msa0369790 | 0.810557 | 1.086649e-50 | -8.615850e-47 |
| Msa0208030 | Msa0424160 | 0.804243 | 2.371520e-49 | -8.615850e-47 |
| Msa0208030 | Msa0464000 | 0.809139 | 2.193573e-50 | -8.615850e-47 |
| Msa0208030 | Msa0509550 | 0.807901 | 4.030911e-50 | -8.615850e-47 |
| Msa0208030 | Msa0528570 | 0.835722 | 1.421810e-56 | -8.615850e-47 |
| Msa0208030 | Msa0557460 | 0.804825 | 1.793677e-49 | -8.615850e-47 |
| Msa0208030 | Msa0626450 | 0.837715 | 4.412652e-57 | -8.615850e-47 |
| Msa0208030 | Msa0626490 | 0.830750 | 2.463013e-55 | -8.615850e-47 |
| Msa0208030 | Msa0664600 | 0.836876 | 7.235557e-57 | -8.615850e-47 |
| Msa0208030 | Msa0725770 | 0.809712 | 1.652014e-50 | -8.615850e-47 |
| Msa0208030 | Msa0738700 | 0.808917 | 2.446455e-50 | -8.615850e-47 |
| Msa0208030 | Msa0871880 | 0.810634 | 1.045560e-50 | -8.615850e-47 |
| Msa0208030 | Msa0876930 | 0.807528 | 4.836756e-50 | -8.615850e-47 |
| Msa0208030 | Msa0876940 | 0.813085 | 3.059276e-51 | -8.615850e-47 |
| Msa0208030 | Msa0905240 | 0.809678 | 1.680122e-50 | -8.615850e-47 |
| Msa0208030 | Msa0937230 | 0.805889 | 1.073620e-49 | -8.615850e-47 |
| Msa0208030 | Msa0979180 | 0.824078 | 9.807909e-54 | -8.615850e-47 |
| Msa0208030 | Msa1415540 | 0.830678 | 2.565620e-55 | -8.615850e-47 |
| Msa0208030 | Msa1440960 | 0.827504 | 1.508268e-54 | -8.615850e-47 |
| Msa0208030 | Msa1459360 | 0.820812 | 5.626753e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0208030 | MtrunA17_Chr2g0307001 | 96.763 | 278 | 5 | 1 | 1 | 278 | 1 | 274 | 0.0 | 548 |
| Msa0208030 | MtrunA17_Chr2g0307541 | 55.597 | 268 | 105 | 4 | 13 | 278 | 8 | 263 | 4.13e-92 | 273 |
| Msa0208030 | MtrunA17_Chr4g0062281 | 51.579 | 285 | 106 | 7 | 1 | 278 | 1 | 260 | 3.21e-91 | 271 |
| Msa0208030 | MtrunA17_Chr1g0173171 | 55.556 | 180 | 70 | 3 | 107 | 278 | 107 | 284 | 6.52e-57 | 184 |
| Msa0208030 | MtrunA17_Chr3g0129191 | 45.087 | 173 | 91 | 3 | 107 | 278 | 90 | 259 | 5.19e-52 | 171 |
| Msa0208030 | MtrunA17_Chr8g0353821 | 49.102 | 167 | 80 | 3 | 113 | 278 | 85 | 247 | 1.06e-50 | 167 |
| Msa0208030 | MtrunA17_Chr8g0353811 | 40.175 | 229 | 103 | 5 | 76 | 278 | 37 | 257 | 7.56e-49 | 162 |
| Msa0208030 | MtrunA17_Chr3g0133611 | 49.102 | 167 | 76 | 3 | 117 | 277 | 72 | 235 | 1.60e-48 | 161 |
| Msa0208030 | MtrunA17_Chr7g0240291 | 44.785 | 163 | 84 | 4 | 116 | 277 | 65 | 222 | 1.40e-38 | 135 |
| Msa0208030 | MtrunA17_Chr3g0123651 | 34.667 | 225 | 133 | 5 | 61 | 277 | 24 | 242 | 4.95e-37 | 131 |
| Msa0208030 | MtrunA17_Chr8g0381701 | 37.805 | 164 | 96 | 5 | 118 | 277 | 59 | 220 | 1.05e-31 | 117 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0208030 | AT3G25640.1 | 49.667 | 300 | 96 | 8 | 1 | 278 | 1 | 267 | 1.13e-80 | 244 |
| Msa0208030 | AT3G25640.2 | 49.667 | 300 | 96 | 8 | 1 | 278 | 27 | 293 | 1.16e-80 | 245 |
| Msa0208030 | AT5G23100.1 | 49.219 | 256 | 101 | 5 | 52 | 278 | 22 | 277 | 1.41e-71 | 221 |
| Msa0208030 | AT2G41660.1 | 52.247 | 178 | 73 | 4 | 110 | 278 | 123 | 297 | 1.73e-59 | 191 |
| Msa0208030 | AT2G21990.1 | 48.538 | 171 | 79 | 4 | 111 | 278 | 88 | 252 | 1.19e-52 | 172 |
| Msa0208030 | AT4G39610.1 | 46.512 | 172 | 83 | 2 | 114 | 278 | 95 | 264 | 5.98e-51 | 168 |
| Msa0208030 | AT5G06990.1 | 47.753 | 178 | 83 | 2 | 109 | 278 | 86 | 261 | 1.51e-50 | 167 |
| Msa0208030 | AT5G42680.2 | 53.374 | 163 | 70 | 4 | 117 | 277 | 78 | 236 | 1.08e-47 | 159 |
| Msa0208030 | AT5G42680.1 | 53.374 | 163 | 70 | 4 | 117 | 277 | 78 | 236 | 1.08e-47 | 159 |
| Msa0208030 | AT2G37880.1 | 47.647 | 170 | 83 | 4 | 112 | 277 | 77 | 244 | 1.42e-44 | 151 |
| Msa0208030 | AT1G21050.2 | 44.785 | 163 | 80 | 4 | 118 | 277 | 125 | 280 | 1.16e-40 | 142 |
| Msa0208030 | AT1G21050.1 | 44.785 | 163 | 80 | 4 | 118 | 277 | 89 | 244 | 1.23e-40 | 141 |
| Msa0208030 | AT5G65340.1 | 42.775 | 173 | 82 | 5 | 116 | 277 | 83 | 249 | 1.21e-37 | 134 |
| Msa0208030 | AT1G76610.1 | 42.857 | 168 | 80 | 4 | 112 | 277 | 72 | 225 | 1.97e-36 | 129 |
| Msa0208030 | AT2G22460.1 | 37.037 | 162 | 96 | 3 | 116 | 276 | 85 | 241 | 1.25e-31 | 117 |
Find 68 sgRNAs with CRISPR-Local
Find 156 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATCATCATCCTCAGGAAAA+TGG | 0.196529 | 2_1:-42154168 | None:intergenic |
| GCTAAGTATGAGAGGGTTAT+TGG | 0.220635 | 2_1:+42154766 | Msa0208030:CDS |
| TTGGTTAGGGAAATGGCTTC+TGG | 0.285014 | 2_1:+42154493 | Msa0208030:CDS |
| AGTCATCTTGGAAAGCAAAA+TGG | 0.301808 | 2_1:-42154420 | None:intergenic |
| CAGCAATTTCTAATGGCATT+TGG | 0.314688 | 2_1:-42154264 | None:intergenic |
| TTACAATAAGTCCTCCAAAT+TGG | 0.317520 | 2_1:-42154586 | None:intergenic |
| AGTTGCTTGAGGAACCAATT+TGG | 0.324910 | 2_1:+42154572 | Msa0208030:CDS |
| ACACCCGCACCCATTGAAAT+AGG | 0.330382 | 2_1:-42154682 | None:intergenic |
| CTTCTTTCTCCTTCTCTAGA+AGG | 0.332135 | 2_1:+42154074 | Msa0208030:CDS |
| TCCCTAACCAAAACACTTGT+TGG | 0.338137 | 2_1:-42154481 | None:intergenic |
| TGGTGATTTGGCTGCCATTA+TGG | 0.344044 | 2_1:-42154044 | None:intergenic |
| AGCAACACCAACAAGTGTTT+TGG | 0.352527 | 2_1:+42154474 | Msa0208030:CDS |
| TCAAGAGCAGCAATTTCTAA+TGG | 0.388276 | 2_1:-42154271 | None:intergenic |
| CTAAGTATGAGAGGGTTATT+GGG | 0.402385 | 2_1:+42154767 | Msa0208030:CDS |
| GGCTCAACTTTGAGTCATCT+TGG | 0.402943 | 2_1:-42154432 | None:intergenic |
| AGAAGAGTCATGTGGTGATT+TGG | 0.413779 | 2_1:-42154056 | None:intergenic |
| GAAAATGTGGTTATGCATAT+AGG | 0.413946 | 2_1:+42154614 | Msa0208030:CDS |
| TTTCGTTATGAAGACCATAA+TGG | 0.423576 | 2_1:+42154030 | None:intergenic |
| AGCAAGTAAAGGCAGAGTTC+AGG | 0.432013 | 2_1:-42154841 | None:intergenic |
| GTCCACGACGGTATCCGAAA+AGG | 0.435618 | 2_1:-42154393 | None:intergenic |
| ATCATCATCCTCAGGAAAAT+GGG | 0.437718 | 2_1:-42154167 | None:intergenic |
| GCTAGCTCAATTAAGAATGT+AGG | 0.445992 | 2_1:-42154454 | None:intergenic |
| TCTCTAGAAGGTATTTCCAT+TGG | 0.449753 | 2_1:+42154086 | Msa0208030:CDS |
| TCAGGACCACCACTACCAAC+AGG | 0.456710 | 2_1:-42154823 | None:intergenic |
| GAGTGTGAGAAGAAAGGAGG+AGG | 0.465242 | 2_1:+42154535 | Msa0208030:CDS |
| TCACCTCCATTCCCACTACT+TGG | 0.485738 | 2_1:-42154715 | None:intergenic |
| ATTTGGAGGACTTATTGTAA+TGG | 0.487129 | 2_1:+42154589 | Msa0208030:CDS |
| GGCTTTGGATGAAGATGATG+AGG | 0.491809 | 2_1:+42154117 | Msa0208030:CDS |
| TATTGTAATGGAAGAAAATG+TGG | 0.509766 | 2_1:+42154601 | Msa0208030:CDS |
| CTAGCTCAATTAAGAATGTA+GGG | 0.510058 | 2_1:-42154453 | None:intergenic |
| GTTAAACTCTAAGCAAGTAA+AGG | 0.515924 | 2_1:-42154852 | None:intergenic |
| TGCTTGAGGAACCAATTTGG+AGG | 0.517349 | 2_1:+42154575 | Msa0208030:CDS |
| TTCTAGTGGCACACGTATGG+TGG | 0.520065 | 2_1:+42154366 | Msa0208030:CDS |
| AGCTGTGGAACCTATTTCAA+TGG | 0.524917 | 2_1:+42154672 | Msa0208030:CDS |
| TCCACGACGGTATCCGAAAA+GGG | 0.528553 | 2_1:-42154392 | None:intergenic |
| CCATTCCCACTACTTGGCAT+TGG | 0.536474 | 2_1:-42154709 | None:intergenic |
| GGAACCTATTTCAATGGGTG+CGG | 0.540745 | 2_1:+42154678 | Msa0208030:CDS |
| TTGGAGTGTGAGAAGAAAGG+AGG | 0.541372 | 2_1:+42154532 | Msa0208030:CDS |
| GCTGTGGAACCTATTTCAAT+GGG | 0.541783 | 2_1:+42154673 | Msa0208030:CDS |
| TGGAGTGGTGAGGATTGCAT+TGG | 0.543210 | 2_1:+42154513 | Msa0208030:CDS |
| AGTGTGAGAAGAAAGGAGGA+GGG | 0.546560 | 2_1:+42154536 | Msa0208030:CDS |
| CAGTTCTAGTGGCACACGTA+TGG | 0.547741 | 2_1:+42154363 | Msa0208030:CDS |
| GGGAATGGAGGTGAGTTTGA+AGG | 0.549280 | 2_1:+42154724 | Msa0208030:CDS |
| GCATTGGAGTGTGAGAAGAA+AGG | 0.552731 | 2_1:+42154529 | Msa0208030:CDS |
| AAAGAGTTTGAAGTTGCTTG+AGG | 0.555693 | 2_1:+42154561 | Msa0208030:CDS |
| CCAATGCCAAGTAGTGGGAA+TGG | 0.559271 | 2_1:+42154709 | Msa0208030:CDS |
| ATGAACCCTGTTGGTAGTGG+TGG | 0.559559 | 2_1:+42154817 | Msa0208030:CDS |
| TATGAGAGCTAAGTATGAGA+GGG | 0.565675 | 2_1:+42154759 | Msa0208030:CDS |
| CGTTCACTTCACAGTTCTAG+TGG | 0.569271 | 2_1:+42154352 | Msa0208030:CDS |
| ATGGAAATACCTTCTAGAGA+AGG | 0.577098 | 2_1:-42154083 | None:intergenic |
| ATATGAGAGCTAAGTATGAG+AGG | 0.585257 | 2_1:+42154758 | Msa0208030:CDS |
| ATGATGAACCCTGTTGGTAG+TGG | 0.586626 | 2_1:+42154814 | Msa0208030:CDS |
| GAACCTATTTCAATGGGTGC+GGG | 0.588156 | 2_1:+42154679 | Msa0208030:CDS |
| TTCTACATGATGAACCCTGT+TGG | 0.588457 | 2_1:+42154808 | Msa0208030:CDS |
| ATGGAAGATATTGAAAGCTG+TGG | 0.589180 | 2_1:+42154657 | Msa0208030:CDS |
| TAGGGAAATGGCTTCTGGAG+TGG | 0.612183 | 2_1:+42154498 | Msa0208030:CDS |
| ATGAATGTGGATCAGAGGAA+TGG | 0.616115 | 2_1:+42154638 | Msa0208030:CDS |
| TAGGCATGAATGTGGATCAG+AGG | 0.616854 | 2_1:+42154633 | Msa0208030:CDS |
| TCTAGTGGCACACGTATGGT+GGG | 0.631207 | 2_1:+42154367 | Msa0208030:CDS |
| AAGGAGAAAGAAGAGTCATG+TGG | 0.646233 | 2_1:-42154064 | None:intergenic |
| GTGTTGCCAATGCCAAGTAG+TGG | 0.650856 | 2_1:+42154703 | Msa0208030:CDS |
| ATGCCAAGTAGTGGGAATGG+AGG | 0.656575 | 2_1:+42154712 | Msa0208030:CDS |
| TGTTGCCAATGCCAAGTAGT+GGG | 0.657243 | 2_1:+42154704 | Msa0208030:CDS |
| CAGGACCACCACTACCAACA+GGG | 0.658555 | 2_1:-42154822 | None:intergenic |
| AAATGGCTTCTGGAGTGGTG+AGG | 0.662532 | 2_1:+42154503 | Msa0208030:CDS |
| TATGCATATAGGCATGAATG+TGG | 0.680421 | 2_1:+42154625 | Msa0208030:CDS |
| TGTTGGTGGTGAGAAAGAAG+AGG | 0.693894 | 2_1:+42154204 | Msa0208030:CDS |
| CAAAATGGACATGTCCACGA+CGG | 0.712176 | 2_1:-42154405 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATTGTAATGGAAGAAAATG+TGG | + | chr2_1:42154601-42154620 | Msa0208030:CDS | 25.0% |
| !! | TATTGTAATGGAAGAAAATG+TGG | + | chr2_1:42154601-42154620 | Msa0208030:CDS | 25.0% |
| GTATTTCCATTGGAAAAAGA+AGG | + | chr2_1:42154096-42154115 | Msa0208030:CDS | 30.0% | |
| CTAGCTCAATTAAGAATGTA+GGG | - | chr2_1:42154456-42154475 | None:intergenic | 30.0% | |
| TTACAATAAGTCCTCCAAAT+TGG | - | chr2_1:42154589-42154608 | None:intergenic | 30.0% | |
| ATTTGGAGGACTTATTGTAA+TGG | + | chr2_1:42154589-42154608 | Msa0208030:CDS | 30.0% | |
| GAAAATGTGGTTATGCATAT+AGG | + | chr2_1:42154614-42154633 | Msa0208030:CDS | 30.0% | |
| GTATTTCCATTGGAAAAAGA+AGG | + | chr2_1:42154096-42154115 | Msa0208030:CDS | 30.0% | |
| CTAGCTCAATTAAGAATGTA+GGG | - | chr2_1:42154456-42154475 | None:intergenic | 30.0% | |
| TTACAATAAGTCCTCCAAAT+TGG | - | chr2_1:42154589-42154608 | None:intergenic | 30.0% | |
| ATTTGGAGGACTTATTGTAA+TGG | + | chr2_1:42154589-42154608 | Msa0208030:CDS | 30.0% | |
| GAAAATGTGGTTATGCATAT+AGG | + | chr2_1:42154614-42154633 | Msa0208030:CDS | 30.0% | |
| ! | ATGGAAATACCTTCTAGAGA+AGG | - | chr2_1:42154086-42154105 | None:intergenic | 35.0% |
| !! | TCTCTAGAAGGTATTTCCAT+TGG | + | chr2_1:42154086-42154105 | Msa0208030:CDS | 35.0% |
| ATCATCATCCTCAGGAAAAT+GGG | - | chr2_1:42154170-42154189 | None:intergenic | 35.0% | |
| ! | GATGATGATGATGATGATGT+TGG | + | chr2_1:42154187-42154206 | Msa0208030:CDS | 35.0% |
| CAGCAATTTCTAATGGCATT+TGG | - | chr2_1:42154267-42154286 | None:intergenic | 35.0% | |
| TCAAGAGCAGCAATTTCTAA+TGG | - | chr2_1:42154274-42154293 | None:intergenic | 35.0% | |
| AGTCATCTTGGAAAGCAAAA+TGG | - | chr2_1:42154423-42154442 | None:intergenic | 35.0% | |
| GCTAGCTCAATTAAGAATGT+AGG | - | chr2_1:42154457-42154476 | None:intergenic | 35.0% | |
| !!! | ACCAACAAGTGTTTTGGTTA+GGG | + | chr2_1:42154480-42154499 | Msa0208030:CDS | 35.0% |
| !!! | AAGTGTTTTGGTTAGGGAAA+TGG | + | chr2_1:42154486-42154505 | Msa0208030:CDS | 35.0% |
| ! | AAAGAGTTTGAAGTTGCTTG+AGG | + | chr2_1:42154561-42154580 | Msa0208030:CDS | 35.0% |
| TATGCATATAGGCATGAATG+TGG | + | chr2_1:42154625-42154644 | Msa0208030:CDS | 35.0% | |
| ATGGAAGATATTGAAAGCTG+TGG | + | chr2_1:42154657-42154676 | Msa0208030:CDS | 35.0% | |
| ATATGAGAGCTAAGTATGAG+AGG | + | chr2_1:42154758-42154777 | Msa0208030:CDS | 35.0% | |
| TATGAGAGCTAAGTATGAGA+GGG | + | chr2_1:42154759-42154778 | Msa0208030:CDS | 35.0% | |
| CTAAGTATGAGAGGGTTATT+GGG | + | chr2_1:42154767-42154786 | Msa0208030:CDS | 35.0% | |
| ! | ATGGAAATACCTTCTAGAGA+AGG | - | chr2_1:42154086-42154105 | None:intergenic | 35.0% |
| !! | TCTCTAGAAGGTATTTCCAT+TGG | + | chr2_1:42154086-42154105 | Msa0208030:CDS | 35.0% |
| ATCATCATCCTCAGGAAAAT+GGG | - | chr2_1:42154170-42154189 | None:intergenic | 35.0% | |
| ! | GATGATGATGATGATGATGT+TGG | + | chr2_1:42154187-42154206 | Msa0208030:CDS | 35.0% |
| CAGCAATTTCTAATGGCATT+TGG | - | chr2_1:42154267-42154286 | None:intergenic | 35.0% | |
| TCAAGAGCAGCAATTTCTAA+TGG | - | chr2_1:42154274-42154293 | None:intergenic | 35.0% | |
| AGTCATCTTGGAAAGCAAAA+TGG | - | chr2_1:42154423-42154442 | None:intergenic | 35.0% | |
| GCTAGCTCAATTAAGAATGT+AGG | - | chr2_1:42154457-42154476 | None:intergenic | 35.0% | |
| !!! | ACCAACAAGTGTTTTGGTTA+GGG | + | chr2_1:42154480-42154499 | Msa0208030:CDS | 35.0% |
| !!! | AAGTGTTTTGGTTAGGGAAA+TGG | + | chr2_1:42154486-42154505 | Msa0208030:CDS | 35.0% |
| ! | AAAGAGTTTGAAGTTGCTTG+AGG | + | chr2_1:42154561-42154580 | Msa0208030:CDS | 35.0% |
| TATGCATATAGGCATGAATG+TGG | + | chr2_1:42154625-42154644 | Msa0208030:CDS | 35.0% | |
| ATGGAAGATATTGAAAGCTG+TGG | + | chr2_1:42154657-42154676 | Msa0208030:CDS | 35.0% | |
| ATATGAGAGCTAAGTATGAG+AGG | + | chr2_1:42154758-42154777 | Msa0208030:CDS | 35.0% | |
| TATGAGAGCTAAGTATGAGA+GGG | + | chr2_1:42154759-42154778 | Msa0208030:CDS | 35.0% | |
| CTAAGTATGAGAGGGTTATT+GGG | + | chr2_1:42154767-42154786 | Msa0208030:CDS | 35.0% | |
| AGAAGAGTCATGTGGTGATT+TGG | - | chr2_1:42154059-42154078 | None:intergenic | 40.0% | |
| AAGGAGAAAGAAGAGTCATG+TGG | - | chr2_1:42154067-42154086 | None:intergenic | 40.0% | |
| CTTCTTTCTCCTTCTCTAGA+AGG | + | chr2_1:42154074-42154093 | Msa0208030:CDS | 40.0% | |
| ! | CCAAAGCCTTCTTTTTCCAA+TGG | - | chr2_1:42154105-42154124 | None:intergenic | 40.0% |
| CCATTGGAAAAAGAAGGCTT+TGG | + | chr2_1:42154102-42154121 | Msa0208030:CDS | 40.0% | |
| ! | TTCATCATCCCATTTTCCTG+AGG | + | chr2_1:42154159-42154178 | Msa0208030:CDS | 40.0% |
| CATCATCATCCTCAGGAAAA+TGG | - | chr2_1:42154171-42154190 | None:intergenic | 40.0% | |
| TCATCATCATCATCATCCTC+AGG | - | chr2_1:42154178-42154197 | None:intergenic | 40.0% | |
| ! | GATGATGATGATGATGTTGG+TGG | + | chr2_1:42154190-42154209 | Msa0208030:CDS | 40.0% |
| ! | AGCAACACCAACAAGTGTTT+TGG | + | chr2_1:42154474-42154493 | Msa0208030:CDS | 40.0% |
| !!! | CACCAACAAGTGTTTTGGTT+AGG | + | chr2_1:42154479-42154498 | Msa0208030:CDS | 40.0% |
| TCCCTAACCAAAACACTTGT+TGG | - | chr2_1:42154484-42154503 | None:intergenic | 40.0% | |
| AGTTGCTTGAGGAACCAATT+TGG | + | chr2_1:42154572-42154591 | Msa0208030:CDS | 40.0% | |
| ATGAATGTGGATCAGAGGAA+TGG | + | chr2_1:42154638-42154657 | Msa0208030:CDS | 40.0% | |
| AGCTGTGGAACCTATTTCAA+TGG | + | chr2_1:42154672-42154691 | Msa0208030:CDS | 40.0% | |
| GCTGTGGAACCTATTTCAAT+GGG | + | chr2_1:42154673-42154692 | Msa0208030:CDS | 40.0% | |
| GCTAAGTATGAGAGGGTTAT+TGG | + | chr2_1:42154766-42154785 | Msa0208030:CDS | 40.0% | |
| TTCTACATGATGAACCCTGT+TGG | + | chr2_1:42154808-42154827 | Msa0208030:CDS | 40.0% | |
| AGAAGAGTCATGTGGTGATT+TGG | - | chr2_1:42154059-42154078 | None:intergenic | 40.0% | |
| AAGGAGAAAGAAGAGTCATG+TGG | - | chr2_1:42154067-42154086 | None:intergenic | 40.0% | |
| CTTCTTTCTCCTTCTCTAGA+AGG | + | chr2_1:42154074-42154093 | Msa0208030:CDS | 40.0% | |
| ! | CCAAAGCCTTCTTTTTCCAA+TGG | - | chr2_1:42154105-42154124 | None:intergenic | 40.0% |
| CCATTGGAAAAAGAAGGCTT+TGG | + | chr2_1:42154102-42154121 | Msa0208030:CDS | 40.0% | |
| ! | TTCATCATCCCATTTTCCTG+AGG | + | chr2_1:42154159-42154178 | Msa0208030:CDS | 40.0% |
| CATCATCATCCTCAGGAAAA+TGG | - | chr2_1:42154171-42154190 | None:intergenic | 40.0% | |
| TCATCATCATCATCATCCTC+AGG | - | chr2_1:42154178-42154197 | None:intergenic | 40.0% | |
| ! | GATGATGATGATGATGTTGG+TGG | + | chr2_1:42154190-42154209 | Msa0208030:CDS | 40.0% |
| ! | AGCAACACCAACAAGTGTTT+TGG | + | chr2_1:42154474-42154493 | Msa0208030:CDS | 40.0% |
| !!! | CACCAACAAGTGTTTTGGTT+AGG | + | chr2_1:42154479-42154498 | Msa0208030:CDS | 40.0% |
| TCCCTAACCAAAACACTTGT+TGG | - | chr2_1:42154484-42154503 | None:intergenic | 40.0% | |
| AGTTGCTTGAGGAACCAATT+TGG | + | chr2_1:42154572-42154591 | Msa0208030:CDS | 40.0% | |
| ATGAATGTGGATCAGAGGAA+TGG | + | chr2_1:42154638-42154657 | Msa0208030:CDS | 40.0% | |
| AGCTGTGGAACCTATTTCAA+TGG | + | chr2_1:42154672-42154691 | Msa0208030:CDS | 40.0% | |
| GCTGTGGAACCTATTTCAAT+GGG | + | chr2_1:42154673-42154692 | Msa0208030:CDS | 40.0% | |
| GCTAAGTATGAGAGGGTTAT+TGG | + | chr2_1:42154766-42154785 | Msa0208030:CDS | 40.0% | |
| TTCTACATGATGAACCCTGT+TGG | + | chr2_1:42154808-42154827 | Msa0208030:CDS | 40.0% | |
| ! | TGGTGATTTGGCTGCCATTA+TGG | - | chr2_1:42154047-42154066 | None:intergenic | 45.0% |
| !! | GGCTTTGGATGAAGATGATG+AGG | + | chr2_1:42154117-42154136 | Msa0208030:CDS | 45.0% |
| !! | TGTTGGTGGTGAGAAAGAAG+AGG | + | chr2_1:42154204-42154223 | Msa0208030:CDS | 45.0% |
| ! | CGTTCACTTCACAGTTCTAG+TGG | + | chr2_1:42154352-42154371 | Msa0208030:CDS | 45.0% |
| CAAAATGGACATGTCCACGA+CGG | - | chr2_1:42154408-42154427 | None:intergenic | 45.0% | |
| GGCTCAACTTTGAGTCATCT+TGG | - | chr2_1:42154435-42154454 | None:intergenic | 45.0% | |
| TTGGTTAGGGAAATGGCTTC+TGG | + | chr2_1:42154493-42154512 | Msa0208030:CDS | 45.0% | |
| GCATTGGAGTGTGAGAAGAA+AGG | + | chr2_1:42154529-42154548 | Msa0208030:CDS | 45.0% | |
| TTGGAGTGTGAGAAGAAAGG+AGG | + | chr2_1:42154532-42154551 | Msa0208030:CDS | 45.0% | |
| AGTGTGAGAAGAAAGGAGGA+GGG | + | chr2_1:42154536-42154555 | Msa0208030:CDS | 45.0% | |
| TGCTTGAGGAACCAATTTGG+AGG | + | chr2_1:42154575-42154594 | Msa0208030:CDS | 45.0% | |
| TAGGCATGAATGTGGATCAG+AGG | + | chr2_1:42154633-42154652 | Msa0208030:CDS | 45.0% | |
| GGAACCTATTTCAATGGGTG+CGG | + | chr2_1:42154678-42154697 | Msa0208030:CDS | 45.0% | |
| GAACCTATTTCAATGGGTGC+GGG | + | chr2_1:42154679-42154698 | Msa0208030:CDS | 45.0% | |
| TGTTGCCAATGCCAAGTAGT+GGG | + | chr2_1:42154704-42154723 | Msa0208030:CDS | 45.0% | |
| ! | ATGATGAACCCTGTTGGTAG+TGG | + | chr2_1:42154814-42154833 | Msa0208030:CDS | 45.0% |
| AGCAAGTAAAGGCAGAGTTC+AGG | - | chr2_1:42154844-42154863 | None:intergenic | 45.0% | |
| ! | TGGTGATTTGGCTGCCATTA+TGG | - | chr2_1:42154047-42154066 | None:intergenic | 45.0% |
| !! | GGCTTTGGATGAAGATGATG+AGG | + | chr2_1:42154117-42154136 | Msa0208030:CDS | 45.0% |
| !! | TGTTGGTGGTGAGAAAGAAG+AGG | + | chr2_1:42154204-42154223 | Msa0208030:CDS | 45.0% |
| ! | CGTTCACTTCACAGTTCTAG+TGG | + | chr2_1:42154352-42154371 | Msa0208030:CDS | 45.0% |
| CAAAATGGACATGTCCACGA+CGG | - | chr2_1:42154408-42154427 | None:intergenic | 45.0% | |
| GGCTCAACTTTGAGTCATCT+TGG | - | chr2_1:42154435-42154454 | None:intergenic | 45.0% | |
| TTGGTTAGGGAAATGGCTTC+TGG | + | chr2_1:42154493-42154512 | Msa0208030:CDS | 45.0% | |
| GCATTGGAGTGTGAGAAGAA+AGG | + | chr2_1:42154529-42154548 | Msa0208030:CDS | 45.0% | |
| TTGGAGTGTGAGAAGAAAGG+AGG | + | chr2_1:42154532-42154551 | Msa0208030:CDS | 45.0% | |
| AGTGTGAGAAGAAAGGAGGA+GGG | + | chr2_1:42154536-42154555 | Msa0208030:CDS | 45.0% | |
| TGCTTGAGGAACCAATTTGG+AGG | + | chr2_1:42154575-42154594 | Msa0208030:CDS | 45.0% | |
| TAGGCATGAATGTGGATCAG+AGG | + | chr2_1:42154633-42154652 | Msa0208030:CDS | 45.0% | |
| GGAACCTATTTCAATGGGTG+CGG | + | chr2_1:42154678-42154697 | Msa0208030:CDS | 45.0% | |
| GAACCTATTTCAATGGGTGC+GGG | + | chr2_1:42154679-42154698 | Msa0208030:CDS | 45.0% | |
| TGTTGCCAATGCCAAGTAGT+GGG | + | chr2_1:42154704-42154723 | Msa0208030:CDS | 45.0% | |
| ! | ATGATGAACCCTGTTGGTAG+TGG | + | chr2_1:42154814-42154833 | Msa0208030:CDS | 45.0% |
| AGCAAGTAAAGGCAGAGTTC+AGG | - | chr2_1:42154844-42154863 | None:intergenic | 45.0% | |
| ! | CAGTTCTAGTGGCACACGTA+TGG | + | chr2_1:42154363-42154382 | Msa0208030:CDS | 50.0% |
| TTCTAGTGGCACACGTATGG+TGG | + | chr2_1:42154366-42154385 | Msa0208030:CDS | 50.0% | |
| TCTAGTGGCACACGTATGGT+GGG | + | chr2_1:42154367-42154386 | Msa0208030:CDS | 50.0% | |
| TCCACGACGGTATCCGAAAA+GGG | - | chr2_1:42154395-42154414 | None:intergenic | 50.0% | |
| ! | TAGGGAAATGGCTTCTGGAG+TGG | + | chr2_1:42154498-42154517 | Msa0208030:CDS | 50.0% |
| !! | AAATGGCTTCTGGAGTGGTG+AGG | + | chr2_1:42154503-42154522 | Msa0208030:CDS | 50.0% |
| TGGAGTGGTGAGGATTGCAT+TGG | + | chr2_1:42154513-42154532 | Msa0208030:CDS | 50.0% | |
| GAGTGTGAGAAGAAAGGAGG+AGG | + | chr2_1:42154535-42154554 | Msa0208030:CDS | 50.0% | |
| ACACCCGCACCCATTGAAAT+AGG | - | chr2_1:42154685-42154704 | None:intergenic | 50.0% | |
| GTGTTGCCAATGCCAAGTAG+TGG | + | chr2_1:42154703-42154722 | Msa0208030:CDS | 50.0% | |
| CCATTCCCACTACTTGGCAT+TGG | - | chr2_1:42154712-42154731 | None:intergenic | 50.0% | |
| ! | CCAATGCCAAGTAGTGGGAA+TGG | + | chr2_1:42154709-42154728 | Msa0208030:CDS | 50.0% |
| ! | ATGCCAAGTAGTGGGAATGG+AGG | + | chr2_1:42154712-42154731 | Msa0208030:CDS | 50.0% |
| TCACCTCCATTCCCACTACT+TGG | - | chr2_1:42154718-42154737 | None:intergenic | 50.0% | |
| GGGAATGGAGGTGAGTTTGA+AGG | + | chr2_1:42154724-42154743 | Msa0208030:CDS | 50.0% | |
| !! | ATGAACCCTGTTGGTAGTGG+TGG | + | chr2_1:42154817-42154836 | Msa0208030:CDS | 50.0% |
| ! | CAGTTCTAGTGGCACACGTA+TGG | + | chr2_1:42154363-42154382 | Msa0208030:CDS | 50.0% |
| TTCTAGTGGCACACGTATGG+TGG | + | chr2_1:42154366-42154385 | Msa0208030:CDS | 50.0% | |
| TCTAGTGGCACACGTATGGT+GGG | + | chr2_1:42154367-42154386 | Msa0208030:CDS | 50.0% | |
| TCCACGACGGTATCCGAAAA+GGG | - | chr2_1:42154395-42154414 | None:intergenic | 50.0% | |
| ! | TAGGGAAATGGCTTCTGGAG+TGG | + | chr2_1:42154498-42154517 | Msa0208030:CDS | 50.0% |
| !! | AAATGGCTTCTGGAGTGGTG+AGG | + | chr2_1:42154503-42154522 | Msa0208030:CDS | 50.0% |
| TGGAGTGGTGAGGATTGCAT+TGG | + | chr2_1:42154513-42154532 | Msa0208030:CDS | 50.0% | |
| GAGTGTGAGAAGAAAGGAGG+AGG | + | chr2_1:42154535-42154554 | Msa0208030:CDS | 50.0% | |
| ACACCCGCACCCATTGAAAT+AGG | - | chr2_1:42154685-42154704 | None:intergenic | 50.0% | |
| GTGTTGCCAATGCCAAGTAG+TGG | + | chr2_1:42154703-42154722 | Msa0208030:CDS | 50.0% | |
| CCATTCCCACTACTTGGCAT+TGG | - | chr2_1:42154712-42154731 | None:intergenic | 50.0% | |
| ! | CCAATGCCAAGTAGTGGGAA+TGG | + | chr2_1:42154709-42154728 | Msa0208030:CDS | 50.0% |
| ! | ATGCCAAGTAGTGGGAATGG+AGG | + | chr2_1:42154712-42154731 | Msa0208030:CDS | 50.0% |
| TCACCTCCATTCCCACTACT+TGG | - | chr2_1:42154718-42154737 | None:intergenic | 50.0% | |
| GGGAATGGAGGTGAGTTTGA+AGG | + | chr2_1:42154724-42154743 | Msa0208030:CDS | 50.0% | |
| !! | ATGAACCCTGTTGGTAGTGG+TGG | + | chr2_1:42154817-42154836 | Msa0208030:CDS | 50.0% |
| !!! | CGTATGGTGGGCACCCTTTT+CGG | + | chr2_1:42154379-42154398 | Msa0208030:CDS | 55.0% |
| ! | ACCCTTTTCGGATACCGTCG+TGG | + | chr2_1:42154391-42154410 | Msa0208030:CDS | 55.0% |
| GTCCACGACGGTATCCGAAA+AGG | - | chr2_1:42154396-42154415 | None:intergenic | 55.0% | |
| CAGGACCACCACTACCAACA+GGG | - | chr2_1:42154825-42154844 | None:intergenic | 55.0% | |
| TCAGGACCACCACTACCAAC+AGG | - | chr2_1:42154826-42154845 | None:intergenic | 55.0% | |
| !!! | CGTATGGTGGGCACCCTTTT+CGG | + | chr2_1:42154379-42154398 | Msa0208030:CDS | 55.0% |
| ! | ACCCTTTTCGGATACCGTCG+TGG | + | chr2_1:42154391-42154410 | Msa0208030:CDS | 55.0% |
| GTCCACGACGGTATCCGAAA+AGG | - | chr2_1:42154396-42154415 | None:intergenic | 55.0% | |
| CAGGACCACCACTACCAACA+GGG | - | chr2_1:42154825-42154844 | None:intergenic | 55.0% | |
| TCAGGACCACCACTACCAAC+AGG | - | chr2_1:42154826-42154845 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 42154037 | 42154873 | 42154037 | ID=Msa0208030;Name=Msa0208030 |
| chr2_1 | mRNA | 42154037 | 42154873 | 42154037 | ID=Msa0208030-mRNA-1;Parent=Msa0208030;Name=Msa0208030-mRNA-1;_AED=0.13;_eAED=0.13;_QI=0|-1|0|1|-1|1|1|0|278 |
| chr2_1 | exon | 42154037 | 42154873 | 42154037 | ID=Msa0208030-mRNA-1:exon:12669;Parent=Msa0208030-mRNA-1 |
| chr2_1 | CDS | 42154037 | 42154873 | 42154037 | ID=Msa0208030-mRNA-1:cds;Parent=Msa0208030-mRNA-1 |
| Gene Sequence |
| Protein sequence |
