Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0208140 | XP_013463905.2 | 96.739 | 276 | 7 | 1 | 1 | 276 | 1 | 274 | 0.0 | 547 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0208140 | sp|O22227|MIZ1_ARATH | 51.685 | 178 | 74 | 4 | 108 | 276 | 123 | 297 | 5.52e-58 | 190 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0208140 | A0A396JCM5 | 96.739 | 276 | 7 | 1 | 1 | 276 | 1 | 274 | 0.0 | 547 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0005890 | Msa0208140 | 0.812126 | 4.959793e-51 | -8.615850e-47 |
| Msa0090400 | Msa0208140 | 0.806605 | 7.583478e-50 | -8.615850e-47 |
| Msa0107850 | Msa0208140 | 0.811145 | 8.105722e-51 | -8.615850e-47 |
| Msa0137880 | Msa0208140 | 0.808375 | 3.193770e-50 | -8.615850e-47 |
| Msa0174450 | Msa0208140 | 0.814611 | 1.410795e-51 | -8.615850e-47 |
| Msa0208030 | Msa0208140 | 0.884360 | 2.049659e-71 | -8.615850e-47 |
| Msa0208140 | Msa0225100 | 0.835805 | 1.355193e-56 | -8.615850e-47 |
| Msa0208140 | Msa0225460 | 0.811995 | 5.297132e-51 | -8.615850e-47 |
| Msa0208140 | Msa0225680 | 0.810552 | 1.089205e-50 | -8.615850e-47 |
| Msa0208140 | Msa0225860 | 0.804957 | 1.682967e-49 | -8.615850e-47 |
| Msa0208140 | Msa0244640 | 0.800365 | 1.491592e-48 | -8.615850e-47 |
| Msa0208140 | Msa0244940 | 0.803757 | 2.992985e-49 | -8.615850e-47 |
| Msa0208140 | Msa0263920 | 0.813330 | 2.703010e-51 | -8.615850e-47 |
| Msa0208140 | Msa0266180 | 0.829331 | 5.466127e-55 | -8.615850e-47 |
| Msa0208140 | Msa0267110 | 0.825182 | 5.387603e-54 | -8.615850e-47 |
| Msa0208140 | Msa0275900 | 0.808180 | 3.514396e-50 | -8.615850e-47 |
| Msa0208140 | Msa0287740 | 0.833761 | 4.429994e-56 | -8.615850e-47 |
| Msa0208140 | Msa0290720 | 0.810623 | 1.051101e-50 | -8.615850e-47 |
| Msa0208140 | Msa0323810 | 0.800666 | 1.295116e-48 | -8.615850e-47 |
| Msa0208140 | Msa0418930 | 0.809864 | 1.532690e-50 | -8.615850e-47 |
| Msa0208140 | Msa0453040 | 0.812039 | 5.181577e-51 | -8.615850e-47 |
| Msa0208140 | Msa0528570 | 0.830250 | 3.264894e-55 | -8.615850e-47 |
| Msa0208140 | Msa0530050 | 0.831780 | 1.374597e-55 | -8.615850e-47 |
| Msa0208140 | Msa0570120 | 0.813820 | 2.109444e-51 | -8.615850e-47 |
| Msa0208140 | Msa0571290 | 0.823856 | 1.105704e-53 | -8.615850e-47 |
| Msa0208140 | Msa0580370 | 0.800854 | 1.185615e-48 | -8.615850e-47 |
| Msa0208140 | Msa0583360 | -0.804838 | 1.782532e-49 | -8.615850e-47 |
| Msa0208140 | Msa0626450 | 0.853352 | 2.528884e-61 | -8.615850e-47 |
| Msa0208140 | Msa0626490 | 0.846976 | 1.547914e-59 | -8.615850e-47 |
| Msa0208140 | Msa0644410 | 0.800194 | 1.616154e-48 | -8.615850e-47 |
| Msa0208140 | Msa0664600 | 0.852614 | 4.113805e-61 | -8.615850e-47 |
| Msa0208140 | Msa0664660 | 0.817461 | 3.258461e-52 | -8.615850e-47 |
| Msa0208140 | Msa0664710 | 0.810278 | 1.248294e-50 | -8.615850e-47 |
| Msa0208140 | Msa0670100 | 0.814872 | 1.234677e-51 | -8.615850e-47 |
| Msa0208140 | Msa0741220 | 0.823698 | 1.203983e-53 | -8.615850e-47 |
| Msa0208140 | Msa0833650 | 0.800402 | 1.466020e-48 | -8.615850e-47 |
| Msa0208140 | Msa0871880 | 0.816217 | 6.198200e-52 | -8.615850e-47 |
| Msa0208140 | Msa0876930 | 0.802531 | 5.367122e-49 | -8.615850e-47 |
| Msa0208140 | Msa0905240 | 0.822686 | 2.074442e-53 | -8.615850e-47 |
| Msa0208140 | Msa0937230 | 0.820256 | 7.549462e-53 | -8.615850e-47 |
| Msa0208140 | Msa0945110 | 0.816143 | 6.436811e-52 | -8.615850e-47 |
| Msa0208140 | Msa0967870 | 0.820816 | 5.615377e-53 | -8.615850e-47 |
| Msa0208140 | Msa0974520 | 0.833838 | 4.237885e-56 | -8.615850e-47 |
| Msa0208140 | Msa0979180 | 0.819611 | 1.060289e-52 | -8.615850e-47 |
| Msa0208140 | Msa1020510 | 0.809919 | 1.491495e-50 | -8.615850e-47 |
| Msa0208140 | Msa1044680 | 0.805903 | 1.066155e-49 | -8.615850e-47 |
| Msa0208140 | Msa1132840 | 0.801549 | 8.544870e-49 | -8.615850e-47 |
| Msa0208140 | Msa1147740 | 0.814203 | 1.736207e-51 | -8.615850e-47 |
| Msa0208140 | Msa1155170 | -0.813770 | 2.163452e-51 | -8.615850e-47 |
| Msa0208140 | Msa1225860 | -0.806674 | 7.333280e-50 | -8.615850e-47 |
| Msa0208140 | Msa1269480 | 0.803424 | 3.508652e-49 | -8.615850e-47 |
| Msa0208140 | Msa1341840 | 0.802337 | 5.885858e-49 | -8.615850e-47 |
| Msa0208140 | Msa1397740 | 0.811123 | 8.193692e-51 | -8.615850e-47 |
| Msa0208140 | Msa1415540 | 0.825636 | 4.207220e-54 | -8.615850e-47 |
| Msa0208140 | Msa1440960 | 0.845705 | 3.438419e-59 | -8.615850e-47 |
| Msa0208140 | Msa1450100 | 0.806778 | 6.973603e-50 | -8.615850e-47 |
| Msa0208140 | Msa1459360 | 0.807284 | 5.449736e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0208140 | MtrunA17_Chr2g0307001 | 96.739 | 276 | 7 | 1 | 1 | 276 | 1 | 274 | 0.0 | 547 |
| Msa0208140 | MtrunA17_Chr2g0307541 | 56.015 | 266 | 105 | 4 | 13 | 276 | 8 | 263 | 1.73e-91 | 271 |
| Msa0208140 | MtrunA17_Chr4g0062281 | 52.098 | 286 | 101 | 8 | 1 | 276 | 1 | 260 | 3.29e-90 | 268 |
| Msa0208140 | MtrunA17_Chr1g0173171 | 55.000 | 180 | 71 | 3 | 105 | 276 | 107 | 284 | 3.25e-56 | 182 |
| Msa0208140 | MtrunA17_Chr3g0129191 | 45.087 | 173 | 91 | 3 | 105 | 276 | 90 | 259 | 1.22e-51 | 169 |
| Msa0208140 | MtrunA17_Chr8g0353821 | 47.904 | 167 | 82 | 3 | 111 | 276 | 85 | 247 | 5.13e-50 | 165 |
| Msa0208140 | MtrunA17_Chr3g0133611 | 49.102 | 167 | 76 | 3 | 115 | 275 | 72 | 235 | 4.26e-48 | 160 |
| Msa0208140 | MtrunA17_Chr8g0353811 | 39.301 | 229 | 105 | 5 | 74 | 276 | 37 | 257 | 4.57e-48 | 160 |
| Msa0208140 | MtrunA17_Chr7g0240291 | 44.172 | 163 | 85 | 4 | 114 | 275 | 65 | 222 | 7.37e-38 | 133 |
| Msa0208140 | MtrunA17_Chr3g0123651 | 34.222 | 225 | 134 | 5 | 59 | 275 | 24 | 242 | 2.01e-36 | 130 |
| Msa0208140 | MtrunA17_Chr8g0381701 | 38.415 | 164 | 95 | 5 | 116 | 275 | 59 | 220 | 2.24e-32 | 119 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0208140 | AT3G25640.1 | 49.664 | 298 | 97 | 8 | 1 | 276 | 1 | 267 | 2.27e-80 | 243 |
| Msa0208140 | AT3G25640.2 | 48.829 | 299 | 98 | 9 | 1 | 276 | 27 | 293 | 2.50e-80 | 244 |
| Msa0208140 | AT5G23100.1 | 49.219 | 256 | 101 | 5 | 50 | 276 | 22 | 277 | 1.49e-71 | 221 |
| Msa0208140 | AT2G41660.1 | 51.685 | 178 | 74 | 4 | 108 | 276 | 123 | 297 | 5.61e-59 | 190 |
| Msa0208140 | AT2G21990.1 | 47.953 | 171 | 80 | 4 | 109 | 276 | 88 | 252 | 6.07e-52 | 170 |
| Msa0208140 | AT4G39610.1 | 45.930 | 172 | 84 | 2 | 112 | 276 | 95 | 264 | 3.39e-50 | 166 |
| Msa0208140 | AT5G06990.1 | 46.629 | 178 | 85 | 2 | 107 | 276 | 86 | 261 | 8.13e-50 | 165 |
| Msa0208140 | AT5G42680.2 | 53.374 | 163 | 70 | 4 | 115 | 275 | 78 | 236 | 2.85e-47 | 158 |
| Msa0208140 | AT5G42680.1 | 53.374 | 163 | 70 | 4 | 115 | 275 | 78 | 236 | 2.85e-47 | 158 |
| Msa0208140 | AT2G37880.1 | 47.647 | 170 | 83 | 4 | 110 | 275 | 77 | 244 | 4.44e-44 | 150 |
| Msa0208140 | AT1G21050.1 | 44.785 | 163 | 80 | 4 | 116 | 275 | 89 | 244 | 3.42e-40 | 140 |
| Msa0208140 | AT1G21050.2 | 44.785 | 163 | 80 | 4 | 116 | 275 | 125 | 280 | 3.66e-40 | 141 |
| Msa0208140 | AT5G65340.1 | 42.197 | 173 | 83 | 5 | 114 | 275 | 83 | 249 | 7.71e-37 | 131 |
| Msa0208140 | AT1G76610.1 | 42.857 | 168 | 80 | 4 | 110 | 275 | 72 | 225 | 5.12e-36 | 128 |
| Msa0208140 | AT2G22460.1 | 36.420 | 162 | 97 | 3 | 114 | 274 | 85 | 241 | 5.79e-31 | 116 |
Find 67 sgRNAs with CRISPR-Local
Find 154 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATCATCATCCTCAGGAAAA+TGG | 0.196529 | 2_1:-42404755 | None:intergenic |
| GCTAAGTATGAGAGGGTTAT+TGG | 0.220635 | 2_1:+42405347 | Msa0208140:CDS |
| TTGGTTAGGGAAATGGCTTC+TGG | 0.285014 | 2_1:+42405074 | Msa0208140:CDS |
| AGTCATCTTGGAAAGCAAAA+TGG | 0.301808 | 2_1:-42405001 | None:intergenic |
| CAGCAATTTCTAATGGCATT+TGG | 0.314688 | 2_1:-42404845 | None:intergenic |
| TGGTGACTTGGCTGCCATTA+TGG | 0.330235 | 2_1:-42404631 | None:intergenic |
| ACACCCGCACCCATTGAAAT+AGG | 0.330382 | 2_1:-42405263 | None:intergenic |
| CTTCTTTCTCCTTCTCTAGA+AGG | 0.332135 | 2_1:+42404661 | Msa0208140:CDS |
| TCCCTAACCAAAACACTTGC+TGG | 0.345484 | 2_1:-42405062 | None:intergenic |
| AGCAACACCAGCAAGTGTTT+TGG | 0.368628 | 2_1:+42405055 | Msa0208140:CDS |
| TCAAGAGCAGCAATTTCTAA+TGG | 0.388276 | 2_1:-42404852 | None:intergenic |
| CTAAGTATGAGAGGGTTATT+GGG | 0.402385 | 2_1:+42405348 | Msa0208140:CDS |
| GGCTCAACTTTGAGTCATCT+TGG | 0.402943 | 2_1:-42405013 | None:intergenic |
| GAAAATGTGGTTATGCATAT+AGG | 0.413946 | 2_1:+42405195 | Msa0208140:CDS |
| TTACAATAAGTTCTCCAAAC+TGG | 0.415841 | 2_1:-42405167 | None:intergenic |
| AGCAAGTAAAGGCAGAGTTC+AGG | 0.432013 | 2_1:-42405422 | None:intergenic |
| GTCCACGACGGTATCCGAAA+AGG | 0.435618 | 2_1:-42404974 | None:intergenic |
| TTTGGTTATGAAGACCATAA+TGG | 0.435947 | 2_1:+42404617 | None:intergenic |
| ATCATCATCCTCAGGAAAAT+GGG | 0.437718 | 2_1:-42404754 | None:intergenic |
| AGTTGCTTGAGGAACCAGTT+TGG | 0.440900 | 2_1:+42405153 | Msa0208140:CDS |
| GCTAGCTCAATTAAGAATGT+AGG | 0.445992 | 2_1:-42405035 | None:intergenic |
| TCTCTAGAAGGTATTTCCAT+TGG | 0.449753 | 2_1:+42404673 | Msa0208140:CDS |
| TCAGGACCACCACTACCAAC+AGG | 0.456710 | 2_1:-42405404 | None:intergenic |
| GTTTGGAGAACTTATTGTAA+TGG | 0.464507 | 2_1:+42405170 | Msa0208140:CDS |
| GAGTGTGAGAAGAAAGGAGG+AGG | 0.465242 | 2_1:+42405116 | Msa0208140:CDS |
| TCACCTCCATTCCCACTACT+TGG | 0.485738 | 2_1:-42405296 | None:intergenic |
| GGCTTTGGATGAAGATGATG+AGG | 0.491809 | 2_1:+42404704 | Msa0208140:CDS |
| TATTGTAATGGAAGAAAATG+TGG | 0.509766 | 2_1:+42405182 | Msa0208140:CDS |
| CTAGCTCAATTAAGAATGTA+GGG | 0.510058 | 2_1:-42405034 | None:intergenic |
| GTTAAACTCTAAGCAAGTAA+AGG | 0.515924 | 2_1:-42405433 | None:intergenic |
| TTCTAGTGGCACACGTATGG+TGG | 0.520065 | 2_1:+42404947 | Msa0208140:CDS |
| AGCTGTGGAACCTATTTCAA+TGG | 0.524917 | 2_1:+42405253 | Msa0208140:CDS |
| TCCACGACGGTATCCGAAAA+GGG | 0.528553 | 2_1:-42404973 | None:intergenic |
| CCATTCCCACTACTTGGCAT+TGG | 0.536474 | 2_1:-42405290 | None:intergenic |
| GGAACCTATTTCAATGGGTG+CGG | 0.540745 | 2_1:+42405259 | Msa0208140:CDS |
| TTGGAGTGTGAGAAGAAAGG+AGG | 0.541372 | 2_1:+42405113 | Msa0208140:CDS |
| GCTGTGGAACCTATTTCAAT+GGG | 0.541783 | 2_1:+42405254 | Msa0208140:CDS |
| TGGAGTGGTGAGGATTGCAT+TGG | 0.543210 | 2_1:+42405094 | Msa0208140:CDS |
| AGTGTGAGAAGAAAGGAGGA+GGG | 0.546560 | 2_1:+42405117 | Msa0208140:CDS |
| CAGTTCTAGTGGCACACGTA+TGG | 0.547741 | 2_1:+42404944 | Msa0208140:CDS |
| GGGAATGGAGGTGAGTTTGA+AGG | 0.549280 | 2_1:+42405305 | Msa0208140:CDS |
| GCATTGGAGTGTGAGAAGAA+AGG | 0.552731 | 2_1:+42405110 | Msa0208140:CDS |
| AAAGAGTTTGAAGTTGCTTG+AGG | 0.555693 | 2_1:+42405142 | Msa0208140:CDS |
| CCAATGCCAAGTAGTGGGAA+TGG | 0.559271 | 2_1:+42405290 | Msa0208140:CDS |
| ATGAACCCTGTTGGTAGTGG+TGG | 0.559559 | 2_1:+42405398 | Msa0208140:CDS |
| AGAAGAGTCATGTGGTGACT+TGG | 0.563167 | 2_1:-42404643 | None:intergenic |
| TATGAGAGCTAAGTATGAGA+GGG | 0.565675 | 2_1:+42405340 | Msa0208140:CDS |
| CGTTCACTTCACAGTTCTAG+TGG | 0.569271 | 2_1:+42404933 | Msa0208140:CDS |
| ATGGAAATACCTTCTAGAGA+AGG | 0.577098 | 2_1:-42404670 | None:intergenic |
| ATATGAGAGCTAAGTATGAG+AGG | 0.585257 | 2_1:+42405339 | Msa0208140:CDS |
| ATGATGAACCCTGTTGGTAG+TGG | 0.586626 | 2_1:+42405395 | Msa0208140:CDS |
| GAACCTATTTCAATGGGTGC+GGG | 0.588156 | 2_1:+42405260 | Msa0208140:CDS |
| TTCTACATGATGAACCCTGT+TGG | 0.588457 | 2_1:+42405389 | Msa0208140:CDS |
| ATGGAAGATATTGAAAGCTG+TGG | 0.589180 | 2_1:+42405238 | Msa0208140:CDS |
| TAGGGAAATGGCTTCTGGAG+TGG | 0.612183 | 2_1:+42405079 | Msa0208140:CDS |
| ATGAATGTGGATCAGAGGAA+TGG | 0.616115 | 2_1:+42405219 | Msa0208140:CDS |
| TAGGCATGAATGTGGATCAG+AGG | 0.616854 | 2_1:+42405214 | Msa0208140:CDS |
| TCTAGTGGCACACGTATGGT+GGG | 0.631207 | 2_1:+42404948 | Msa0208140:CDS |
| AAGGAGAAAGAAGAGTCATG+TGG | 0.646233 | 2_1:-42404651 | None:intergenic |
| GTGTTGCCAATGCCAAGTAG+TGG | 0.650856 | 2_1:+42405284 | Msa0208140:CDS |
| ATGCCAAGTAGTGGGAATGG+AGG | 0.656575 | 2_1:+42405293 | Msa0208140:CDS |
| TGTTGCCAATGCCAAGTAGT+GGG | 0.657243 | 2_1:+42405285 | Msa0208140:CDS |
| CAGGACCACCACTACCAACA+GGG | 0.658555 | 2_1:-42405403 | None:intergenic |
| AAATGGCTTCTGGAGTGGTG+AGG | 0.662532 | 2_1:+42405084 | Msa0208140:CDS |
| TATGCATATAGGCATGAATG+TGG | 0.680421 | 2_1:+42405206 | Msa0208140:CDS |
| TGTTGGTGGTGAGAAAGAAG+AGG | 0.693894 | 2_1:+42404785 | Msa0208140:CDS |
| CAAAATGGACATGTCCACGA+CGG | 0.712176 | 2_1:-42404986 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATTGTAATGGAAGAAAATG+TGG | + | chr2_1:42405182-42405201 | Msa0208140:CDS | 25.0% |
| !! | TATTGTAATGGAAGAAAATG+TGG | + | chr2_1:42405182-42405201 | Msa0208140:CDS | 25.0% |
| GTATTTCCATTGGAAAAAGA+AGG | + | chr2_1:42404683-42404702 | Msa0208140:CDS | 30.0% | |
| CTAGCTCAATTAAGAATGTA+GGG | - | chr2_1:42405037-42405056 | None:intergenic | 30.0% | |
| TTACAATAAGTTCTCCAAAC+TGG | - | chr2_1:42405170-42405189 | None:intergenic | 30.0% | |
| GTTTGGAGAACTTATTGTAA+TGG | + | chr2_1:42405170-42405189 | Msa0208140:CDS | 30.0% | |
| GAAAATGTGGTTATGCATAT+AGG | + | chr2_1:42405195-42405214 | Msa0208140:CDS | 30.0% | |
| GTATTTCCATTGGAAAAAGA+AGG | + | chr2_1:42404683-42404702 | Msa0208140:CDS | 30.0% | |
| CTAGCTCAATTAAGAATGTA+GGG | - | chr2_1:42405037-42405056 | None:intergenic | 30.0% | |
| TTACAATAAGTTCTCCAAAC+TGG | - | chr2_1:42405170-42405189 | None:intergenic | 30.0% | |
| GTTTGGAGAACTTATTGTAA+TGG | + | chr2_1:42405170-42405189 | Msa0208140:CDS | 30.0% | |
| GAAAATGTGGTTATGCATAT+AGG | + | chr2_1:42405195-42405214 | Msa0208140:CDS | 30.0% | |
| ! | ATGGAAATACCTTCTAGAGA+AGG | - | chr2_1:42404673-42404692 | None:intergenic | 35.0% |
| !! | TCTCTAGAAGGTATTTCCAT+TGG | + | chr2_1:42404673-42404692 | Msa0208140:CDS | 35.0% |
| ATCATCATCCTCAGGAAAAT+GGG | - | chr2_1:42404757-42404776 | None:intergenic | 35.0% | |
| ! | GATGATGATGATGATGATGT+TGG | + | chr2_1:42404768-42404787 | Msa0208140:CDS | 35.0% |
| CAGCAATTTCTAATGGCATT+TGG | - | chr2_1:42404848-42404867 | None:intergenic | 35.0% | |
| TCAAGAGCAGCAATTTCTAA+TGG | - | chr2_1:42404855-42404874 | None:intergenic | 35.0% | |
| AGTCATCTTGGAAAGCAAAA+TGG | - | chr2_1:42405004-42405023 | None:intergenic | 35.0% | |
| GCTAGCTCAATTAAGAATGT+AGG | - | chr2_1:42405038-42405057 | None:intergenic | 35.0% | |
| !!! | AAGTGTTTTGGTTAGGGAAA+TGG | + | chr2_1:42405067-42405086 | Msa0208140:CDS | 35.0% |
| ! | AAAGAGTTTGAAGTTGCTTG+AGG | + | chr2_1:42405142-42405161 | Msa0208140:CDS | 35.0% |
| TATGCATATAGGCATGAATG+TGG | + | chr2_1:42405206-42405225 | Msa0208140:CDS | 35.0% | |
| ATGGAAGATATTGAAAGCTG+TGG | + | chr2_1:42405238-42405257 | Msa0208140:CDS | 35.0% | |
| ATATGAGAGCTAAGTATGAG+AGG | + | chr2_1:42405339-42405358 | Msa0208140:CDS | 35.0% | |
| TATGAGAGCTAAGTATGAGA+GGG | + | chr2_1:42405340-42405359 | Msa0208140:CDS | 35.0% | |
| CTAAGTATGAGAGGGTTATT+GGG | + | chr2_1:42405348-42405367 | Msa0208140:CDS | 35.0% | |
| ! | ATGGAAATACCTTCTAGAGA+AGG | - | chr2_1:42404673-42404692 | None:intergenic | 35.0% |
| !! | TCTCTAGAAGGTATTTCCAT+TGG | + | chr2_1:42404673-42404692 | Msa0208140:CDS | 35.0% |
| ATCATCATCCTCAGGAAAAT+GGG | - | chr2_1:42404757-42404776 | None:intergenic | 35.0% | |
| ! | GATGATGATGATGATGATGT+TGG | + | chr2_1:42404768-42404787 | Msa0208140:CDS | 35.0% |
| CAGCAATTTCTAATGGCATT+TGG | - | chr2_1:42404848-42404867 | None:intergenic | 35.0% | |
| TCAAGAGCAGCAATTTCTAA+TGG | - | chr2_1:42404855-42404874 | None:intergenic | 35.0% | |
| AGTCATCTTGGAAAGCAAAA+TGG | - | chr2_1:42405004-42405023 | None:intergenic | 35.0% | |
| GCTAGCTCAATTAAGAATGT+AGG | - | chr2_1:42405038-42405057 | None:intergenic | 35.0% | |
| !!! | AAGTGTTTTGGTTAGGGAAA+TGG | + | chr2_1:42405067-42405086 | Msa0208140:CDS | 35.0% |
| ! | AAAGAGTTTGAAGTTGCTTG+AGG | + | chr2_1:42405142-42405161 | Msa0208140:CDS | 35.0% |
| TATGCATATAGGCATGAATG+TGG | + | chr2_1:42405206-42405225 | Msa0208140:CDS | 35.0% | |
| ATGGAAGATATTGAAAGCTG+TGG | + | chr2_1:42405238-42405257 | Msa0208140:CDS | 35.0% | |
| ATATGAGAGCTAAGTATGAG+AGG | + | chr2_1:42405339-42405358 | Msa0208140:CDS | 35.0% | |
| TATGAGAGCTAAGTATGAGA+GGG | + | chr2_1:42405340-42405359 | Msa0208140:CDS | 35.0% | |
| CTAAGTATGAGAGGGTTATT+GGG | + | chr2_1:42405348-42405367 | Msa0208140:CDS | 35.0% | |
| AAGGAGAAAGAAGAGTCATG+TGG | - | chr2_1:42404654-42404673 | None:intergenic | 40.0% | |
| CTTCTTTCTCCTTCTCTAGA+AGG | + | chr2_1:42404661-42404680 | Msa0208140:CDS | 40.0% | |
| ! | CCAAAGCCTTCTTTTTCCAA+TGG | - | chr2_1:42404692-42404711 | None:intergenic | 40.0% |
| CCATTGGAAAAAGAAGGCTT+TGG | + | chr2_1:42404689-42404708 | Msa0208140:CDS | 40.0% | |
| ! | TTCATCATCCCATTTTCCTG+AGG | + | chr2_1:42404746-42404765 | Msa0208140:CDS | 40.0% |
| CATCATCATCCTCAGGAAAA+TGG | - | chr2_1:42404758-42404777 | None:intergenic | 40.0% | |
| TCATCATCATCATCATCCTC+AGG | - | chr2_1:42404765-42404784 | None:intergenic | 40.0% | |
| ! | GATGATGATGATGATGTTGG+TGG | + | chr2_1:42404771-42404790 | Msa0208140:CDS | 40.0% |
| !!! | ACCAGCAAGTGTTTTGGTTA+GGG | + | chr2_1:42405061-42405080 | Msa0208140:CDS | 40.0% |
| ATGAATGTGGATCAGAGGAA+TGG | + | chr2_1:42405219-42405238 | Msa0208140:CDS | 40.0% | |
| AGCTGTGGAACCTATTTCAA+TGG | + | chr2_1:42405253-42405272 | Msa0208140:CDS | 40.0% | |
| GCTGTGGAACCTATTTCAAT+GGG | + | chr2_1:42405254-42405273 | Msa0208140:CDS | 40.0% | |
| GCTAAGTATGAGAGGGTTAT+TGG | + | chr2_1:42405347-42405366 | Msa0208140:CDS | 40.0% | |
| TTCTACATGATGAACCCTGT+TGG | + | chr2_1:42405389-42405408 | Msa0208140:CDS | 40.0% | |
| AAGGAGAAAGAAGAGTCATG+TGG | - | chr2_1:42404654-42404673 | None:intergenic | 40.0% | |
| CTTCTTTCTCCTTCTCTAGA+AGG | + | chr2_1:42404661-42404680 | Msa0208140:CDS | 40.0% | |
| ! | CCAAAGCCTTCTTTTTCCAA+TGG | - | chr2_1:42404692-42404711 | None:intergenic | 40.0% |
| CCATTGGAAAAAGAAGGCTT+TGG | + | chr2_1:42404689-42404708 | Msa0208140:CDS | 40.0% | |
| ! | TTCATCATCCCATTTTCCTG+AGG | + | chr2_1:42404746-42404765 | Msa0208140:CDS | 40.0% |
| CATCATCATCCTCAGGAAAA+TGG | - | chr2_1:42404758-42404777 | None:intergenic | 40.0% | |
| TCATCATCATCATCATCCTC+AGG | - | chr2_1:42404765-42404784 | None:intergenic | 40.0% | |
| ! | GATGATGATGATGATGTTGG+TGG | + | chr2_1:42404771-42404790 | Msa0208140:CDS | 40.0% |
| !!! | ACCAGCAAGTGTTTTGGTTA+GGG | + | chr2_1:42405061-42405080 | Msa0208140:CDS | 40.0% |
| ATGAATGTGGATCAGAGGAA+TGG | + | chr2_1:42405219-42405238 | Msa0208140:CDS | 40.0% | |
| AGCTGTGGAACCTATTTCAA+TGG | + | chr2_1:42405253-42405272 | Msa0208140:CDS | 40.0% | |
| GCTGTGGAACCTATTTCAAT+GGG | + | chr2_1:42405254-42405273 | Msa0208140:CDS | 40.0% | |
| GCTAAGTATGAGAGGGTTAT+TGG | + | chr2_1:42405347-42405366 | Msa0208140:CDS | 40.0% | |
| TTCTACATGATGAACCCTGT+TGG | + | chr2_1:42405389-42405408 | Msa0208140:CDS | 40.0% | |
| AGAAGAGTCATGTGGTGACT+TGG | - | chr2_1:42404646-42404665 | None:intergenic | 45.0% | |
| !! | GGCTTTGGATGAAGATGATG+AGG | + | chr2_1:42404704-42404723 | Msa0208140:CDS | 45.0% |
| !! | TGTTGGTGGTGAGAAAGAAG+AGG | + | chr2_1:42404785-42404804 | Msa0208140:CDS | 45.0% |
| ! | CGTTCACTTCACAGTTCTAG+TGG | + | chr2_1:42404933-42404952 | Msa0208140:CDS | 45.0% |
| CAAAATGGACATGTCCACGA+CGG | - | chr2_1:42404989-42405008 | None:intergenic | 45.0% | |
| GGCTCAACTTTGAGTCATCT+TGG | - | chr2_1:42405016-42405035 | None:intergenic | 45.0% | |
| ! | AGCAACACCAGCAAGTGTTT+TGG | + | chr2_1:42405055-42405074 | Msa0208140:CDS | 45.0% |
| !!! | CACCAGCAAGTGTTTTGGTT+AGG | + | chr2_1:42405060-42405079 | Msa0208140:CDS | 45.0% |
| TCCCTAACCAAAACACTTGC+TGG | - | chr2_1:42405065-42405084 | None:intergenic | 45.0% | |
| TTGGTTAGGGAAATGGCTTC+TGG | + | chr2_1:42405074-42405093 | Msa0208140:CDS | 45.0% | |
| GCATTGGAGTGTGAGAAGAA+AGG | + | chr2_1:42405110-42405129 | Msa0208140:CDS | 45.0% | |
| TTGGAGTGTGAGAAGAAAGG+AGG | + | chr2_1:42405113-42405132 | Msa0208140:CDS | 45.0% | |
| AGTGTGAGAAGAAAGGAGGA+GGG | + | chr2_1:42405117-42405136 | Msa0208140:CDS | 45.0% | |
| AGTTGCTTGAGGAACCAGTT+TGG | + | chr2_1:42405153-42405172 | Msa0208140:CDS | 45.0% | |
| TAGGCATGAATGTGGATCAG+AGG | + | chr2_1:42405214-42405233 | Msa0208140:CDS | 45.0% | |
| GGAACCTATTTCAATGGGTG+CGG | + | chr2_1:42405259-42405278 | Msa0208140:CDS | 45.0% | |
| GAACCTATTTCAATGGGTGC+GGG | + | chr2_1:42405260-42405279 | Msa0208140:CDS | 45.0% | |
| TGTTGCCAATGCCAAGTAGT+GGG | + | chr2_1:42405285-42405304 | Msa0208140:CDS | 45.0% | |
| ! | ATGATGAACCCTGTTGGTAG+TGG | + | chr2_1:42405395-42405414 | Msa0208140:CDS | 45.0% |
| AGCAAGTAAAGGCAGAGTTC+AGG | - | chr2_1:42405425-42405444 | None:intergenic | 45.0% | |
| AGAAGAGTCATGTGGTGACT+TGG | - | chr2_1:42404646-42404665 | None:intergenic | 45.0% | |
| !! | GGCTTTGGATGAAGATGATG+AGG | + | chr2_1:42404704-42404723 | Msa0208140:CDS | 45.0% |
| !! | TGTTGGTGGTGAGAAAGAAG+AGG | + | chr2_1:42404785-42404804 | Msa0208140:CDS | 45.0% |
| ! | CGTTCACTTCACAGTTCTAG+TGG | + | chr2_1:42404933-42404952 | Msa0208140:CDS | 45.0% |
| CAAAATGGACATGTCCACGA+CGG | - | chr2_1:42404989-42405008 | None:intergenic | 45.0% | |
| GGCTCAACTTTGAGTCATCT+TGG | - | chr2_1:42405016-42405035 | None:intergenic | 45.0% | |
| ! | AGCAACACCAGCAAGTGTTT+TGG | + | chr2_1:42405055-42405074 | Msa0208140:CDS | 45.0% |
| !!! | CACCAGCAAGTGTTTTGGTT+AGG | + | chr2_1:42405060-42405079 | Msa0208140:CDS | 45.0% |
| TCCCTAACCAAAACACTTGC+TGG | - | chr2_1:42405065-42405084 | None:intergenic | 45.0% | |
| TTGGTTAGGGAAATGGCTTC+TGG | + | chr2_1:42405074-42405093 | Msa0208140:CDS | 45.0% | |
| GCATTGGAGTGTGAGAAGAA+AGG | + | chr2_1:42405110-42405129 | Msa0208140:CDS | 45.0% | |
| TTGGAGTGTGAGAAGAAAGG+AGG | + | chr2_1:42405113-42405132 | Msa0208140:CDS | 45.0% | |
| AGTGTGAGAAGAAAGGAGGA+GGG | + | chr2_1:42405117-42405136 | Msa0208140:CDS | 45.0% | |
| AGTTGCTTGAGGAACCAGTT+TGG | + | chr2_1:42405153-42405172 | Msa0208140:CDS | 45.0% | |
| TAGGCATGAATGTGGATCAG+AGG | + | chr2_1:42405214-42405233 | Msa0208140:CDS | 45.0% | |
| GGAACCTATTTCAATGGGTG+CGG | + | chr2_1:42405259-42405278 | Msa0208140:CDS | 45.0% | |
| GAACCTATTTCAATGGGTGC+GGG | + | chr2_1:42405260-42405279 | Msa0208140:CDS | 45.0% | |
| TGTTGCCAATGCCAAGTAGT+GGG | + | chr2_1:42405285-42405304 | Msa0208140:CDS | 45.0% | |
| ! | ATGATGAACCCTGTTGGTAG+TGG | + | chr2_1:42405395-42405414 | Msa0208140:CDS | 45.0% |
| AGCAAGTAAAGGCAGAGTTC+AGG | - | chr2_1:42405425-42405444 | None:intergenic | 45.0% | |
| ! | TGGTGACTTGGCTGCCATTA+TGG | - | chr2_1:42404634-42404653 | None:intergenic | 50.0% |
| ! | CAGTTCTAGTGGCACACGTA+TGG | + | chr2_1:42404944-42404963 | Msa0208140:CDS | 50.0% |
| TTCTAGTGGCACACGTATGG+TGG | + | chr2_1:42404947-42404966 | Msa0208140:CDS | 50.0% | |
| TCTAGTGGCACACGTATGGT+GGG | + | chr2_1:42404948-42404967 | Msa0208140:CDS | 50.0% | |
| TCCACGACGGTATCCGAAAA+GGG | - | chr2_1:42404976-42404995 | None:intergenic | 50.0% | |
| ! | TAGGGAAATGGCTTCTGGAG+TGG | + | chr2_1:42405079-42405098 | Msa0208140:CDS | 50.0% |
| !! | AAATGGCTTCTGGAGTGGTG+AGG | + | chr2_1:42405084-42405103 | Msa0208140:CDS | 50.0% |
| TGGAGTGGTGAGGATTGCAT+TGG | + | chr2_1:42405094-42405113 | Msa0208140:CDS | 50.0% | |
| GAGTGTGAGAAGAAAGGAGG+AGG | + | chr2_1:42405116-42405135 | Msa0208140:CDS | 50.0% | |
| ACACCCGCACCCATTGAAAT+AGG | - | chr2_1:42405266-42405285 | None:intergenic | 50.0% | |
| GTGTTGCCAATGCCAAGTAG+TGG | + | chr2_1:42405284-42405303 | Msa0208140:CDS | 50.0% | |
| CCATTCCCACTACTTGGCAT+TGG | - | chr2_1:42405293-42405312 | None:intergenic | 50.0% | |
| ! | CCAATGCCAAGTAGTGGGAA+TGG | + | chr2_1:42405290-42405309 | Msa0208140:CDS | 50.0% |
| ! | ATGCCAAGTAGTGGGAATGG+AGG | + | chr2_1:42405293-42405312 | Msa0208140:CDS | 50.0% |
| TCACCTCCATTCCCACTACT+TGG | - | chr2_1:42405299-42405318 | None:intergenic | 50.0% | |
| GGGAATGGAGGTGAGTTTGA+AGG | + | chr2_1:42405305-42405324 | Msa0208140:CDS | 50.0% | |
| !! | ATGAACCCTGTTGGTAGTGG+TGG | + | chr2_1:42405398-42405417 | Msa0208140:CDS | 50.0% |
| ! | TGGTGACTTGGCTGCCATTA+TGG | - | chr2_1:42404634-42404653 | None:intergenic | 50.0% |
| ! | CAGTTCTAGTGGCACACGTA+TGG | + | chr2_1:42404944-42404963 | Msa0208140:CDS | 50.0% |
| TTCTAGTGGCACACGTATGG+TGG | + | chr2_1:42404947-42404966 | Msa0208140:CDS | 50.0% | |
| TCTAGTGGCACACGTATGGT+GGG | + | chr2_1:42404948-42404967 | Msa0208140:CDS | 50.0% | |
| TCCACGACGGTATCCGAAAA+GGG | - | chr2_1:42404976-42404995 | None:intergenic | 50.0% | |
| ! | TAGGGAAATGGCTTCTGGAG+TGG | + | chr2_1:42405079-42405098 | Msa0208140:CDS | 50.0% |
| !! | AAATGGCTTCTGGAGTGGTG+AGG | + | chr2_1:42405084-42405103 | Msa0208140:CDS | 50.0% |
| TGGAGTGGTGAGGATTGCAT+TGG | + | chr2_1:42405094-42405113 | Msa0208140:CDS | 50.0% | |
| GAGTGTGAGAAGAAAGGAGG+AGG | + | chr2_1:42405116-42405135 | Msa0208140:CDS | 50.0% | |
| ACACCCGCACCCATTGAAAT+AGG | - | chr2_1:42405266-42405285 | None:intergenic | 50.0% | |
| GTGTTGCCAATGCCAAGTAG+TGG | + | chr2_1:42405284-42405303 | Msa0208140:CDS | 50.0% | |
| CCATTCCCACTACTTGGCAT+TGG | - | chr2_1:42405293-42405312 | None:intergenic | 50.0% | |
| ! | CCAATGCCAAGTAGTGGGAA+TGG | + | chr2_1:42405290-42405309 | Msa0208140:CDS | 50.0% |
| ! | ATGCCAAGTAGTGGGAATGG+AGG | + | chr2_1:42405293-42405312 | Msa0208140:CDS | 50.0% |
| TCACCTCCATTCCCACTACT+TGG | - | chr2_1:42405299-42405318 | None:intergenic | 50.0% | |
| GGGAATGGAGGTGAGTTTGA+AGG | + | chr2_1:42405305-42405324 | Msa0208140:CDS | 50.0% | |
| !! | ATGAACCCTGTTGGTAGTGG+TGG | + | chr2_1:42405398-42405417 | Msa0208140:CDS | 50.0% |
| !!! | CGTATGGTGGGCACCCTTTT+CGG | + | chr2_1:42404960-42404979 | Msa0208140:CDS | 55.0% |
| ! | ACCCTTTTCGGATACCGTCG+TGG | + | chr2_1:42404972-42404991 | Msa0208140:CDS | 55.0% |
| GTCCACGACGGTATCCGAAA+AGG | - | chr2_1:42404977-42404996 | None:intergenic | 55.0% | |
| CAGGACCACCACTACCAACA+GGG | - | chr2_1:42405406-42405425 | None:intergenic | 55.0% | |
| TCAGGACCACCACTACCAAC+AGG | - | chr2_1:42405407-42405426 | None:intergenic | 55.0% | |
| !!! | CGTATGGTGGGCACCCTTTT+CGG | + | chr2_1:42404960-42404979 | Msa0208140:CDS | 55.0% |
| ! | ACCCTTTTCGGATACCGTCG+TGG | + | chr2_1:42404972-42404991 | Msa0208140:CDS | 55.0% |
| GTCCACGACGGTATCCGAAA+AGG | - | chr2_1:42404977-42404996 | None:intergenic | 55.0% | |
| CAGGACCACCACTACCAACA+GGG | - | chr2_1:42405406-42405425 | None:intergenic | 55.0% | |
| TCAGGACCACCACTACCAAC+AGG | - | chr2_1:42405407-42405426 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 42404624 | 42405454 | 42404624 | ID=Msa0208140;Name=Msa0208140 |
| chr2_1 | mRNA | 42404624 | 42405454 | 42404624 | ID=Msa0208140-mRNA-1;Parent=Msa0208140;Name=Msa0208140-mRNA-1;_AED=0.13;_eAED=0.13;_QI=0|-1|0|1|-1|1|1|0|276 |
| chr2_1 | exon | 42404624 | 42405454 | 42404624 | ID=Msa0208140-mRNA-1:exon:12716;Parent=Msa0208140-mRNA-1 |
| chr2_1 | CDS | 42404624 | 42405454 | 42404624 | ID=Msa0208140-mRNA-1:cds;Parent=Msa0208140-mRNA-1 |
| Gene Sequence |
| Protein sequence |
