Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0725770 | XP_003613819.1 | 93.542 | 542 | 13 | 2 | 1 | 520 | 1 | 542 | 0.0 | 1028 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0725770 | sp|Q9S746|HTH_ARATH | 43.462 | 543 | 213 | 14 | 44 | 509 | 62 | 587 | 2.61e-132 | 399 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0725770 | G7KGL1 | 93.542 | 542 | 13 | 2 | 1 | 520 | 1 | 542 | 0.0 | 1028 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000050 | Msa0725770 | 0.854318 | 1.333558e-61 | -8.615850e-47 |
| Msa0002580 | Msa0725770 | 0.833531 | 5.054398e-56 | -8.615850e-47 |
| Msa0005890 | Msa0725770 | 0.805767 | 1.138778e-49 | -8.615850e-47 |
| Msa0027820 | Msa0725770 | 0.826159 | 3.161481e-54 | -8.615850e-47 |
| Msa0030370 | Msa0725770 | 0.804140 | 2.491777e-49 | -8.615850e-47 |
| Msa0048510 | Msa0725770 | 0.802331 | 5.901372e-49 | -8.615850e-47 |
| Msa0050790 | Msa0725770 | 0.800678 | 1.287462e-48 | -8.615850e-47 |
| Msa0071880 | Msa0725770 | 0.804446 | 2.152093e-49 | -8.615850e-47 |
| Msa0081520 | Msa0725770 | 0.817923 | 2.563563e-52 | -8.615850e-47 |
| Msa0090400 | Msa0725770 | 0.814776 | 1.296862e-51 | -8.615850e-47 |
| Msa0094780 | Msa0725770 | 0.820751 | 5.813886e-53 | -8.615850e-47 |
| Msa0098040 | Msa0725770 | 0.821218 | 4.538473e-53 | -8.615850e-47 |
| Msa0108410 | Msa0725770 | 0.820385 | 7.055322e-53 | -8.615850e-47 |
| Msa0116680 | Msa0725770 | 0.805697 | 1.178106e-49 | -8.615850e-47 |
| Msa0611210 | Msa0725770 | 0.828148 | 1.056284e-54 | -8.615850e-47 |
| Msa0624900 | Msa0725770 | 0.806342 | 8.617403e-50 | -8.615850e-47 |
| Msa0626450 | Msa0725770 | 0.833984 | 3.894912e-56 | -8.615850e-47 |
| Msa0626490 | Msa0725770 | 0.827881 | 1.224199e-54 | -8.615850e-47 |
| Msa0644410 | Msa0725770 | 0.807685 | 4.479402e-50 | -8.615850e-47 |
| Msa0651550 | Msa0725770 | 0.818932 | 1.514233e-52 | -8.615850e-47 |
| Msa0658640 | Msa0725770 | 0.802547 | 5.328227e-49 | -8.615850e-47 |
| Msa0664600 | Msa0725770 | 0.831397 | 1.708567e-55 | -8.615850e-47 |
| Msa0666700 | Msa0725770 | 0.810178 | 1.311336e-50 | -8.615850e-47 |
| Msa0675330 | Msa0725770 | 0.801427 | 9.050140e-49 | -8.615850e-47 |
| Msa0715060 | Msa0725770 | 0.811891 | 5.578699e-51 | -8.615850e-47 |
| Msa0721080 | Msa0725770 | 0.810312 | 1.227292e-50 | -8.615850e-47 |
| Msa0725750 | Msa0725770 | 0.831136 | 1.980967e-55 | -8.615850e-47 |
| Msa0725770 | Msa0727640 | 0.821684 | 3.543128e-53 | -8.615850e-47 |
| Msa0725770 | Msa0738700 | 0.822921 | 1.828716e-53 | -8.615850e-47 |
| Msa0725770 | Msa0741220 | 0.830453 | 2.912285e-55 | -8.615850e-47 |
| Msa0725770 | Msa0756490 | 0.800013 | 1.758375e-48 | -8.615850e-47 |
| Msa0725770 | Msa0766350 | 0.897375 | 1.494501e-76 | -8.615850e-47 |
| Msa0725770 | Msa0768990 | 0.831426 | 1.680976e-55 | -8.615850e-47 |
| Msa0725770 | Msa0770330 | 0.813361 | 2.661266e-51 | -8.615850e-47 |
| Msa0725770 | Msa0778590 | 0.809517 | 1.819554e-50 | -8.615850e-47 |
| Msa0725770 | Msa0780270 | 0.814383 | 1.584734e-51 | -8.615850e-47 |
| Msa0725770 | Msa0783530 | 0.815112 | 1.092489e-51 | -8.615850e-47 |
| Msa0725770 | Msa0792370 | 0.808441 | 3.092386e-50 | -8.615850e-47 |
| Msa0725770 | Msa0795870 | 0.853670 | 2.050188e-61 | -8.615850e-47 |
| Msa0725770 | Msa0819170 | 0.821596 | 3.713063e-53 | -8.615850e-47 |
| Msa0725770 | Msa0829300 | 0.827580 | 1.446630e-54 | -8.615850e-47 |
| Msa0725770 | Msa0829330 | 0.833318 | 5.712477e-56 | -8.615850e-47 |
| Msa0725770 | Msa0833650 | 0.851076 | 1.122957e-60 | -8.615850e-47 |
| Msa0725770 | Msa0835490 | 0.828316 | 9.619156e-55 | -8.615850e-47 |
| Msa0725770 | Msa0859290 | 0.811166 | 8.019104e-51 | -8.615850e-47 |
| Msa0725770 | Msa0861850 | 0.816821 | 4.537807e-52 | -8.615850e-47 |
| Msa0725770 | Msa0876930 | 0.816194 | 6.271536e-52 | -8.615850e-47 |
| Msa0725770 | Msa0945110 | 0.810081 | 1.375938e-50 | -8.615850e-47 |
| Msa0725770 | Msa0967380 | 0.809092 | 2.244353e-50 | -8.615850e-47 |
| Msa0725770 | Msa0967870 | 0.828826 | 7.244831e-55 | -8.615850e-47 |
| Msa0725770 | Msa0974520 | 0.807829 | 4.174983e-50 | -8.615850e-47 |
| Msa0725770 | Msa0979180 | 0.807504 | 4.895390e-50 | -8.615850e-47 |
| Msa0725770 | Msa1019430 | 0.827279 | 1.707997e-54 | -8.615850e-47 |
| Msa0725770 | Msa1019470 | 0.829269 | 5.656751e-55 | -8.615850e-47 |
| Msa0725770 | Msa1020480 | 0.806314 | 8.735831e-50 | -8.615850e-47 |
| Msa0725770 | Msa1042160 | 0.819263 | 1.273196e-52 | -8.615850e-47 |
| Msa0725770 | Msa1042190 | 0.820529 | 6.537301e-53 | -8.615850e-47 |
| Msa0725770 | Msa1043370 | 0.804627 | 1.972534e-49 | -8.615850e-47 |
| Msa0725770 | Msa1044680 | 0.809062 | 2.278579e-50 | -8.615850e-47 |
| Msa0725770 | Msa1096960 | 0.812577 | 3.953040e-51 | -8.615850e-47 |
| Msa0725770 | Msa1105780 | 0.810393 | 1.178448e-50 | -8.615850e-47 |
| Msa0725770 | Msa1132840 | 0.852819 | 3.593642e-61 | -8.615850e-47 |
| Msa0725770 | Msa1155170 | -0.835464 | 1.653096e-56 | -8.615850e-47 |
| Msa0725770 | Msa1160920 | 0.811430 | 7.028062e-51 | -8.615850e-47 |
| Msa0725770 | Msa1167470 | 0.802018 | 6.844338e-49 | -8.615850e-47 |
| Msa0725770 | Msa1186020 | 0.807110 | 5.931248e-50 | -8.615850e-47 |
| Msa0725770 | Msa1192570 | 0.804103 | 2.536865e-49 | -8.615850e-47 |
| Msa0725770 | Msa1200890 | 0.807106 | 5.944081e-50 | -8.615850e-47 |
| Msa0725770 | Msa1208950 | 0.820394 | 7.021440e-53 | -8.615850e-47 |
| Msa0725770 | Msa1225860 | -0.832953 | 7.043450e-56 | -8.615850e-47 |
| Msa0725770 | Msa1228200 | 0.823771 | 1.157418e-53 | -8.615850e-47 |
| Msa0725770 | Msa1236410 | 0.835788 | 1.368378e-56 | -8.615850e-47 |
| Msa0725770 | Msa1265650 | 0.831935 | 1.258918e-55 | -8.615850e-47 |
| Msa0725770 | Msa1277220 | 0.817719 | 2.849461e-52 | -8.615850e-47 |
| Msa0725770 | Msa1297230 | 0.829751 | 4.319054e-55 | -8.615850e-47 |
| Msa0725770 | Msa1303560 | 0.842238 | 2.920776e-58 | -8.615850e-47 |
| Msa0725770 | Msa1303650 | 0.837634 | 4.629579e-57 | -8.615850e-47 |
| Msa0725770 | Msa1307630 | 0.802461 | 5.550234e-49 | -8.615850e-47 |
| Msa0725770 | Msa1320670 | 0.800584 | 1.345911e-48 | -8.615850e-47 |
| Msa0725770 | Msa1330420 | 0.811155 | 8.066173e-51 | -8.615850e-47 |
| Msa0725770 | Msa1343430 | 0.801299 | 9.612316e-49 | -8.615850e-47 |
| Msa0725770 | Msa1346560 | 0.819940 | 8.917266e-53 | -8.615850e-47 |
| Msa0725770 | Msa1348090 | 0.806609 | 7.569069e-50 | -8.615850e-47 |
| Msa0725770 | Msa1372040 | 0.802296 | 6.000755e-49 | -8.615850e-47 |
| Msa0725770 | Msa1387620 | 0.806543 | 7.817033e-50 | -8.615850e-47 |
| Msa0725770 | Msa1397400 | 0.822565 | 2.213464e-53 | -8.615850e-47 |
| Msa0725770 | Msa1405460 | 0.813428 | 2.572787e-51 | -8.615850e-47 |
| Msa0725770 | Msa1415540 | 0.830861 | 2.313705e-55 | -8.615850e-47 |
| Msa0725770 | Msa1420950 | 0.816579 | 5.141225e-52 | -8.615850e-47 |
| Msa0725770 | Msa1432500 | 0.808080 | 3.692141e-50 | -8.615850e-47 |
| Msa0725770 | Msa1440960 | 0.829770 | 4.274919e-55 | -8.615850e-47 |
| Msa0725770 | Msa1449480 | 0.804957 | 1.683187e-49 | -8.615850e-47 |
| Msa0136650 | Msa0725770 | 0.822022 | 2.958357e-53 | -8.615850e-47 |
| Msa0137880 | Msa0725770 | 0.813711 | 2.228466e-51 | -8.615850e-47 |
| Msa0158860 | Msa0725770 | 0.807820 | 4.192783e-50 | -8.615850e-47 |
| Msa0173540 | Msa0725770 | 0.811412 | 7.091608e-51 | -8.615850e-47 |
| Msa0173730 | Msa0725770 | 0.804596 | 2.001951e-49 | -8.615850e-47 |
| Msa0174450 | Msa0725770 | 0.843138 | 1.685153e-58 | -8.615850e-47 |
| Msa0182190 | Msa0725770 | 0.816224 | 6.172994e-52 | -8.615850e-47 |
| Msa0182240 | Msa0725770 | 0.802121 | 6.519633e-49 | -8.615850e-47 |
| Msa0208030 | Msa0725770 | 0.809712 | 1.652014e-50 | -8.615850e-47 |
| Msa0225100 | Msa0725770 | 0.849178 | 3.821260e-60 | -8.615850e-47 |
| Msa0225860 | Msa0725770 | 0.862580 | 4.583501e-64 | -8.615850e-47 |
| Msa0367870 | Msa0725770 | 0.805478 | 1.309105e-49 | -8.615850e-47 |
| Msa0369790 | Msa0725770 | 0.860315 | 2.249927e-63 | -8.615850e-47 |
| Msa0378720 | Msa0725770 | 0.839240 | 1.783373e-57 | -8.615850e-47 |
| Msa0380620 | Msa0725770 | 0.827005 | 1.985836e-54 | -8.615850e-47 |
| Msa0392380 | Msa0725770 | 0.800480 | 1.413135e-48 | -8.615850e-47 |
| Msa0403640 | Msa0725770 | 0.814156 | 1.778207e-51 | -8.615850e-47 |
| Msa0428370 | Msa0725770 | 0.840911 | 6.538919e-58 | -8.615850e-47 |
| Msa0430260 | Msa0725770 | 0.824448 | 8.030010e-54 | -8.615850e-47 |
| Msa0430300 | Msa0725770 | 0.801788 | 7.631902e-49 | -8.615850e-47 |
| Msa0436910 | Msa0725770 | 0.832365 | 9.854844e-56 | -8.615850e-47 |
| Msa0464000 | Msa0725770 | 0.858563 | 7.559068e-63 | -8.615850e-47 |
| Msa0465530 | Msa0725770 | 0.800933 | 1.142197e-48 | -8.615850e-47 |
| Msa0472950 | Msa0725770 | 0.829800 | 4.202300e-55 | -8.615850e-47 |
| Msa0474730 | Msa0725770 | 0.849700 | 2.731846e-60 | -8.615850e-47 |
| Msa0242590 | Msa0725770 | 0.807575 | 4.727440e-50 | -8.615850e-47 |
| Msa0244640 | Msa0725770 | 0.855609 | 5.626261e-62 | -8.615850e-47 |
| Msa0251710 | Msa0725770 | 0.800546 | 1.369953e-48 | -8.615850e-47 |
| Msa0260510 | Msa0725770 | 0.821488 | 3.931398e-53 | -8.615850e-47 |
| Msa0265850 | Msa0725770 | 0.806418 | 8.304909e-50 | -8.615850e-47 |
| Msa0266180 | Msa0725770 | 0.854692 | 1.039097e-61 | -8.615850e-47 |
| Msa0267110 | Msa0725770 | 0.812828 | 3.483694e-51 | -8.615850e-47 |
| Msa0283330 | Msa0725770 | 0.835845 | 1.323303e-56 | -8.615850e-47 |
| Msa0287740 | Msa0725770 | 0.847874 | 8.771673e-60 | -8.615850e-47 |
| Msa0290720 | Msa0725770 | 0.804665 | 1.937017e-49 | -8.615850e-47 |
| Msa0298470 | Msa0725770 | 0.809994 | 1.437125e-50 | -8.615850e-47 |
| Msa0307670 | Msa0725770 | 0.804862 | 1.761908e-49 | -8.615850e-47 |
| Msa0321620 | Msa0725770 | 0.827399 | 1.598859e-54 | -8.615850e-47 |
| Msa0330380 | Msa0725770 | 0.833074 | 6.570299e-56 | -8.615850e-47 |
| Msa0340500 | Msa0725770 | 0.840775 | 7.096544e-58 | -8.615850e-47 |
| Msa0483100 | Msa0725770 | 0.800622 | 1.321986e-48 | -8.615850e-47 |
| Msa0500380 | Msa0725770 | 0.811715 | 6.094530e-51 | -8.615850e-47 |
| Msa0509550 | Msa0725770 | 0.853355 | 2.524924e-61 | -8.615850e-47 |
| Msa0519750 | Msa0725770 | 0.812576 | 3.955398e-51 | -8.615850e-47 |
| Msa0519820 | Msa0725770 | 0.820325 | 7.281958e-53 | -8.615850e-47 |
| Msa0519830 | Msa0725770 | 0.812263 | 4.629611e-51 | -8.615850e-47 |
| Msa0528570 | Msa0725770 | 0.841481 | 4.629248e-58 | -8.615850e-47 |
| Msa0529030 | Msa0725770 | 0.818700 | 1.709861e-52 | -8.615850e-47 |
| Msa0530780 | Msa0725770 | 0.805127 | 1.551273e-49 | -8.615850e-47 |
| Msa0543660 | Msa0725770 | 0.802291 | 6.013882e-49 | -8.615850e-47 |
| Msa0548470 | Msa0725770 | 0.814334 | 1.624197e-51 | -8.615850e-47 |
| Msa0557460 | Msa0725770 | 0.834634 | 2.676659e-56 | -8.615850e-47 |
| Msa0567170 | Msa0725770 | 0.804527 | 2.069366e-49 | -8.615850e-47 |
| Msa0580370 | Msa0725770 | 0.853604 | 2.140792e-61 | -8.615850e-47 |
| Msa0583360 | Msa0725770 | -0.828870 | 7.070632e-55 | -8.615850e-47 |
| Msa0584420 | Msa0725770 | 0.805924 | 1.055291e-49 | -8.615850e-47 |
| Msa0589510 | Msa0725770 | 0.800670 | 1.292799e-48 | -8.615850e-47 |
| Msa0597270 | Msa0725770 | 0.820881 | 5.425646e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0725770 | MtrunA17_Chr5g0417511 | 93.542 | 542 | 13 | 2 | 1 | 520 | 1 | 542 | 0.0 | 1028 |
| Msa0725770 | MtrunA17_Chr5g0398121 | 43.144 | 547 | 222 | 11 | 45 | 516 | 48 | 580 | 2.05e-139 | 414 |
| Msa0725770 | MtrunA17_Chr2g0330251 | 42.272 | 537 | 226 | 13 | 45 | 509 | 63 | 587 | 2.16e-129 | 389 |
| Msa0725770 | MtrunA17_Chr8g0342061 | 41.774 | 541 | 227 | 11 | 43 | 509 | 53 | 579 | 4.82e-128 | 385 |
| Msa0725770 | MtrunA17_Chr1g0203971 | 40.338 | 533 | 229 | 9 | 44 | 501 | 16 | 534 | 4.37e-126 | 379 |
| Msa0725770 | MtrunA17_Chr5g0398141 | 39.868 | 454 | 193 | 13 | 126 | 514 | 5 | 443 | 4.14e-96 | 298 |
| Msa0725770 | MtrunA17_Chr4g0000501 | 40.580 | 276 | 124 | 7 | 268 | 510 | 6 | 274 | 1.16e-57 | 193 |
| Msa0725770 | MtrunA17_Chr4g0000491 | 53.125 | 192 | 70 | 4 | 45 | 217 | 54 | 244 | 4.38e-53 | 180 |
| Msa0725770 | MtrunA17_Chr1g0203951 | 53.719 | 121 | 41 | 2 | 44 | 153 | 22 | 138 | 2.45e-37 | 134 |
| Msa0725770 | MtrunA17_Chr5g0398131 | 60.204 | 98 | 28 | 1 | 45 | 131 | 13 | 110 | 5.46e-31 | 116 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0725770 | AT1G14190.2 | 58.171 | 514 | 193 | 5 | 13 | 514 | 6 | 509 | 0.0 | 610 |
| Msa0725770 | AT1G14190.1 | 59.394 | 495 | 180 | 4 | 32 | 514 | 3 | 488 | 0.0 | 607 |
| Msa0725770 | AT1G14185.1 | 58.203 | 512 | 191 | 5 | 10 | 509 | 3 | 503 | 0.0 | 603 |
| Msa0725770 | AT1G72970.1 | 43.462 | 543 | 213 | 14 | 44 | 509 | 62 | 587 | 2.65e-133 | 399 |
| Msa0725770 | AT5G51950.3 | 41.087 | 589 | 247 | 13 | 5 | 510 | 4 | 575 | 1.92e-132 | 397 |
| Msa0725770 | AT5G51950.2 | 42.936 | 545 | 217 | 11 | 45 | 510 | 13 | 542 | 2.51e-132 | 395 |
| Msa0725770 | AT5G51950.1 | 41.117 | 591 | 246 | 14 | 5 | 510 | 4 | 577 | 3.28e-132 | 396 |
| Msa0725770 | AT1G12570.1 | 40.484 | 578 | 250 | 14 | 13 | 512 | 10 | 571 | 1.65e-130 | 392 |
| Msa0725770 | AT1G73050.1 | 44.291 | 508 | 229 | 12 | 45 | 509 | 54 | 550 | 4.16e-130 | 390 |
| Msa0725770 | AT1G72970.2 | 43.977 | 523 | 212 | 12 | 44 | 509 | 62 | 560 | 1.75e-129 | 389 |
| Msa0725770 | AT3G56060.1 | 41.431 | 531 | 236 | 11 | 45 | 509 | 46 | 567 | 3.42e-129 | 388 |
| Msa0725770 | AT5G51930.2 | 41.513 | 542 | 230 | 11 | 44 | 514 | 25 | 550 | 4.95e-119 | 361 |
| Msa0725770 | AT5G51930.1 | 41.556 | 527 | 221 | 11 | 44 | 499 | 72 | 582 | 1.50e-113 | 348 |
Find 104 sgRNAs with CRISPR-Local
Find 189 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTATAGTTTGGAGCATATC+AGG | 0.227435 | 5_1:-25615057 | Msa0725770:CDS |
| ATCAGGGGAACCAAGATTTC+TGG | 0.241263 | 5_1:-25615040 | Msa0725770:CDS |
| ACAAGAACTGTGAGGTTCTT+TGG | 0.244938 | 5_1:+25614956 | None:intergenic |
| CTTGATTCATTGATGCTTAG+TGG | 0.272621 | 5_1:+25613848 | None:intergenic |
| CAGATTCTGTTTCCCTTTGT+TGG | 0.284554 | 5_1:+25613387 | None:intergenic |
| CTACAAAGTTCATGGTATAA+AGG | 0.291989 | 5_1:-25613510 | Msa0725770:CDS |
| GCCCTACAATGGTTATAGTT+TGG | 0.297158 | 5_1:-25615068 | Msa0725770:CDS |
| TCATGGTATAAAGGGATTAA+AGG | 0.306133 | 5_1:-25613501 | Msa0725770:CDS |
| GGGAGTGTGTTTGATGGATT+TGG | 0.306485 | 5_1:-25615019 | Msa0725770:CDS |
| CCCCTTGAAGTTGAATGGTT+TGG | 0.336997 | 5_1:+25614124 | None:intergenic |
| GGTGGCTCATCAGCTATAAA+TGG | 0.349307 | 5_1:-25615259 | Msa0725770:CDS |
| CATCACCCCTTGAAGTTGAA+TGG | 0.386140 | 5_1:+25614119 | None:intergenic |
| TACAAAGTTCATGGTATAAA+GGG | 0.389378 | 5_1:-25613509 | Msa0725770:CDS |
| ATATTATCAGCAGGTGCATT+AGG | 0.405342 | 5_1:-25614094 | Msa0725770:CDS |
| ACTAGTTCATGAAATGAAAC+AGG | 0.408524 | 5_1:-25614005 | Msa0725770:CDS |
| GAAAGAGGTGGTTCACCATA+TGG | 0.411776 | 5_1:-25615409 | Msa0725770:CDS |
| CTCCAAACTATAACCATTGT+AGG | 0.417066 | 5_1:+25615066 | None:intergenic |
| CCTGATCCACCACAAATTGC+AGG | 0.417262 | 5_1:-25613914 | Msa0725770:CDS |
| GCACATGACTTCGGATGTTA+AGG | 0.420708 | 5_1:-25615533 | Msa0725770:CDS |
| TCATATGATTACATTATAGT+TGG | 0.421609 | 5_1:-25615496 | Msa0725770:CDS |
| AATGTGAGAGGAAGAGTTCT+TGG | 0.424602 | 5_1:-25615280 | Msa0725770:CDS |
| ATAGCAATGCCTCTTTCAAA+AGG | 0.425278 | 5_1:-25613806 | Msa0725770:CDS |
| GATCATTGTTGCTCAGTTCA+AGG | 0.428453 | 5_1:+25613780 | None:intergenic |
| CACTAAGCATCAATGAATCA+AGG | 0.429122 | 5_1:-25613847 | Msa0725770:CDS |
| TATAAAGGGATTAAAGGTAT+TGG | 0.432574 | 5_1:-25613495 | Msa0725770:CDS |
| AAACACACTCCCAGAAATCT+TGG | 0.435114 | 5_1:+25615030 | None:intergenic |
| TTCACAGCAGGGTTAAGCCT+TGG | 0.437687 | 5_1:+25613758 | None:intergenic |
| ATTTCTGGGAGTGTGTTTGA+TGG | 0.444120 | 5_1:-25615025 | Msa0725770:CDS |
| GAATTTAGTCTTCTCGAAAC+GGG | 0.449569 | 5_1:-25615097 | Msa0725770:CDS |
| GATAAAGACTACAAAGTTCA+TGG | 0.455678 | 5_1:-25613518 | Msa0725770:CDS |
| ATTACTAAGGGATTTCCATA+TGG | 0.457033 | 5_1:+25615394 | None:intergenic |
| TCTGTTATGCCTGCAATTTG+TGG | 0.462136 | 5_1:+25613905 | None:intergenic |
| GATGAATTTGTTGATAAAGT+TGG | 0.462185 | 5_1:-25615214 | Msa0725770:CDS |
| AACCAAACCATTCAACTTCA+AGG | 0.464351 | 5_1:-25614126 | Msa0725770:CDS |
| TCAGGGGAACCAAGATTTCT+GGG | 0.466094 | 5_1:-25615039 | Msa0725770:CDS |
| TGAGTCACAGCAAAGCAAAT+TGG | 0.470372 | 5_1:-25613633 | Msa0725770:CDS |
| CCTGCAATTTGTGGTGGATC+AGG | 0.472565 | 5_1:+25613914 | None:intergenic |
| ATGGTTTGGTTTCTTGATGT+AGG | 0.472808 | 5_1:+25614138 | None:intergenic |
| GTTGGAGAATCTTGATACCT+TGG | 0.474801 | 5_1:+25613405 | None:intergenic |
| TGAATTTAGTCTTCTCGAAA+CGG | 0.479430 | 5_1:-25615098 | Msa0725770:CDS |
| ATTTGTTGATAAAGTTGGTT+GGG | 0.480078 | 5_1:-25615209 | Msa0725770:CDS |
| TTGTTAAAGAAGCTTATGAA+TGG | 0.481724 | 5_1:-25615177 | Msa0725770:CDS |
| CTTGATGAACTTGATACCCT+TGG | 0.485528 | 5_1:+25614192 | None:intergenic |
| TTCATAGTACTTGCAAATTG+TGG | 0.490761 | 5_1:-25615983 | Msa0725770:intron |
| TCAGCTGATCTTCTTGAGGC+TGG | 0.493708 | 5_1:-25614983 | Msa0725770:CDS |
| TCGGATGTTAAGGAAGTAGC+AGG | 0.494503 | 5_1:-25615523 | Msa0725770:CDS |
| CAAAGATTCACTTCAGAAGA+TGG | 0.495094 | 5_1:-25615310 | Msa0725770:CDS |
| TATGATTACATTATAGTTGG+AGG | 0.498016 | 5_1:-25615493 | Msa0725770:CDS |
| AGATAGTTGAATTTCACAGC+AGG | 0.506395 | 5_1:+25613746 | None:intergenic |
| TGTTAAAGAAGCTTATGAAT+GGG | 0.509588 | 5_1:-25615176 | Msa0725770:CDS |
| GTATCAAGATTCTCCAACAA+AGG | 0.511803 | 5_1:-25613400 | Msa0725770:CDS |
| AGAACTATCTATCACTATCA+TGG | 0.512229 | 5_1:-25613566 | Msa0725770:CDS |
| TGTTTCATTTCATGAACTAG+TGG | 0.512739 | 5_1:+25614007 | None:intergenic |
| TATCAAGATTCTCCAACAAA+GGG | 0.517558 | 5_1:-25613399 | Msa0725770:CDS |
| GTCACCAGGTACTAATCCTA+TGG | 0.519218 | 5_1:-25613453 | Msa0725770:CDS |
| ATCAAGTTCATCAAGAGTAA+TGG | 0.523595 | 5_1:-25614184 | Msa0725770:CDS |
| AATTTGTTGATAAAGTTGGT+TGG | 0.526334 | 5_1:-25615210 | Msa0725770:CDS |
| TCTGATAGAGTAGCTGCTAA+AGG | 0.528626 | 5_1:+25615454 | None:intergenic |
| AGCATCATCTTTCATTACAA+TGG | 0.542353 | 5_1:-25614917 | Msa0725770:intron |
| GATAGTTGAATTTCACAGCA+GGG | 0.544877 | 5_1:+25613747 | None:intergenic |
| TATCATGGTGGTTGCAGTGT+TGG | 0.545850 | 5_1:-25613551 | Msa0725770:CDS |
| TGCTTTGCTGTGACTCACCA+AGG | 0.547039 | 5_1:+25613639 | None:intergenic |
| ACCAAACCATTCAACTTCAA+GGG | 0.551680 | 5_1:-25614125 | Msa0725770:CDS |
| TAGCAATGCCTCTTTCAAAA+GGG | 0.552326 | 5_1:-25613805 | Msa0725770:CDS |
| GTTATGCCTGCAATTTGTGG+TGG | 0.556647 | 5_1:+25613908 | None:intergenic |
| CAAGAATGAAACAAGGGCCA+AGG | 0.557798 | 5_1:-25614209 | Msa0725770:CDS |
| TTATAGTTTGGAGCATATCA+GGG | 0.558056 | 5_1:-25615056 | Msa0725770:CDS |
| GATGGTGTTAGCAATGTGAG+AGG | 0.558102 | 5_1:-25615292 | Msa0725770:CDS |
| GGTGATGTCATATTATCAGC+AGG | 0.568505 | 5_1:-25614103 | Msa0725770:CDS |
| GAAATGAAACAGGTTGGTCA+AGG | 0.573424 | 5_1:-25613995 | Msa0725770:CDS |
| TTATGAACATGTTTGATTTG+TGG | 0.574694 | 5_1:+25616031 | None:intergenic |
| TCAACTAAGATTGCTATGCA+AGG | 0.575435 | 5_1:+25613959 | None:intergenic |
| TCCAAACTATAACCATTGTA+GGG | 0.585018 | 5_1:+25615067 | None:intergenic |
| AACTGAGCAACAATGATCCA+AGG | 0.586972 | 5_1:-25613775 | Msa0725770:CDS |
| AATTACTCAATAAAATTGCA+AGG | 0.588567 | 5_1:-25613682 | Msa0725770:CDS |
| GATTACATTATAGTTGGAGG+AGG | 0.589082 | 5_1:-25615490 | Msa0725770:CDS |
| ACTAAGCATCAATGAATCAA+GGG | 0.592050 | 5_1:-25613846 | Msa0725770:CDS |
| GTTCATGAAATGAAACAGGT+TGG | 0.592262 | 5_1:-25614001 | Msa0725770:CDS |
| TAAAGAAGCTTATGAATGGG+TGG | 0.595958 | 5_1:-25615173 | Msa0725770:CDS |
| CAACTAAGATTGCTATGCAA+GGG | 0.598474 | 5_1:+25613960 | None:intergenic |
| GAGACAATGGCACATGACTT+CGG | 0.599235 | 5_1:-25615542 | Msa0725770:CDS |
| AAGGGATTAAAGGTATTGGA+TGG | 0.603189 | 5_1:-25613491 | Msa0725770:CDS |
| GGCTCATCAGCTATAAATGG+TGG | 0.608408 | 5_1:-25615256 | Msa0725770:CDS |
| AAGAATGAAACAAGGGCCAA+GGG | 0.609525 | 5_1:-25614208 | Msa0725770:CDS |
| TCTGTGCTACTAATAGAAAG+AGG | 0.610524 | 5_1:-25615424 | Msa0725770:CDS |
| GTGAGAGGAAGAGTTCTTGG+TGG | 0.618458 | 5_1:-25615277 | Msa0725770:CDS |
| TGGTTGCAGTGTTGGAACAG+TGG | 0.618519 | 5_1:-25613543 | Msa0725770:CDS |
| CAGGTGACAAGAATGAAACA+AGG | 0.619494 | 5_1:-25614216 | Msa0725770:CDS |
| TACCTCAGCTGATCTTCTTG+AGG | 0.626186 | 5_1:-25614987 | Msa0725770:CDS |
| CCAAACCATTCAACTTCAAG+GGG | 0.628346 | 5_1:-25614124 | Msa0725770:CDS |
| ATAGTTGGAGGAGGTACATG+TGG | 0.636326 | 5_1:-25615481 | Msa0725770:CDS |
| ACAATGTAGGTAAGAGACAA+TGG | 0.639537 | 5_1:-25615555 | Msa0725770:intron |
| AGCATCAAAAGTGTAGCCAT+AGG | 0.642151 | 5_1:+25613437 | None:intergenic |
| TATAGTTTGGAGCATATCAG+GGG | 0.653579 | 5_1:-25615055 | Msa0725770:CDS |
| GTGCTACTAATAGAAAGAGG+TGG | 0.667477 | 5_1:-25615421 | Msa0725770:CDS |
| AGCCTCAAGAAGATCAGCTG+AGG | 0.672209 | 5_1:+25614985 | None:intergenic |
| AATTCAGCAACAGATTGCCA+TGG | 0.672603 | 5_1:+25615115 | None:intergenic |
| CGGATGTTAAGGAAGTAGCA+GGG | 0.691890 | 5_1:-25615522 | Msa0725770:CDS |
| GTAGCCATAGGATTAGTACC+TGG | 0.693537 | 5_1:+25613449 | None:intergenic |
| AGGTGACAAGAATGAAACAA+GGG | 0.696456 | 5_1:-25614215 | Msa0725770:CDS |
| TTGATGCTAGGAAGGTACCA+AGG | 0.703387 | 5_1:-25613422 | Msa0725770:CDS |
| ACTATCTATCACTATCATGG+TGG | 0.706690 | 5_1:-25613563 | Msa0725770:CDS |
| AAAGATGATGCTCTTCACTG+TGG | 0.719776 | 5_1:+25614928 | None:intergenic |
| TGGCATTTACAAGAACTGTG+AGG | 0.760804 | 5_1:+25614948 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGAATAAATAAAGATATTTC+TGG | - | chr5_1:25614339-25614358 | Msa0725770:intron | 15.0% |
| !!! | AATTTTTTCAATTGTTCTTT+TGG | + | chr5_1:25615194-25615213 | None:intergenic | 15.0% |
| !! | TCATATGATTACATTATAGT+TGG | - | chr5_1:25613732-25613751 | Msa0725770:CDS | 20.0% |
| !! | TATCTTCTATCAATTACTAA+GGG | + | chr5_1:25613849-25613868 | None:intergenic | 20.0% |
| !! | AAATTTATGTAATAAGTGCA+AGG | - | chr5_1:25614362-25614381 | Msa0725770:intron | 20.0% |
| !! | AAGTTGAAGATTTCAAAAAA+CGG | - | chr5_1:25614803-25614822 | Msa0725770:intron | 20.0% |
| !!! | TTTTTATTGCTACTTATTCT+AGG | + | chr5_1:25614947-25614966 | None:intergenic | 20.0% |
| !! | AATTACTCAATAAAATTGCA+AGG | - | chr5_1:25615546-25615565 | Msa0725770:CDS | 20.0% |
| !!! | TTATGAACATGTTTGATTTG+TGG | + | chr5_1:25613200-25613219 | None:intergenic | 25.0% |
| ! | AACAAAAATACAACAAAGAG+AGG | + | chr5_1:25613224-25613243 | None:intergenic | 25.0% |
| ! | TATGAAACATCGATACAATA+TGG | + | chr5_1:25613540-25613559 | None:intergenic | 25.0% |
| !! | TTTCTTTTAAGCTTGAAACA+AGG | - | chr5_1:25613627-25613646 | Msa0725770:CDS | 25.0% |
| ! | TATGATTACATTATAGTTGG+AGG | - | chr5_1:25613735-25613754 | Msa0725770:CDS | 25.0% |
| ! | GTATCTTCTATCAATTACTA+AGG | + | chr5_1:25613850-25613869 | None:intergenic | 25.0% |
| ! | GTAATTGATAGAAGATACTA+TGG | - | chr5_1:25613852-25613871 | Msa0725770:CDS | 25.0% |
| !!! | GATGAATTTGTTGATAAAGT+TGG | - | chr5_1:25614014-25614033 | Msa0725770:CDS | 25.0% |
| !!! | AATTTGTTGATAAAGTTGGT+TGG | - | chr5_1:25614018-25614037 | Msa0725770:CDS | 25.0% |
| !! | ATTTGTTGATAAAGTTGGTT+GGG | - | chr5_1:25614019-25614038 | Msa0725770:CDS | 25.0% |
| ! | TTGTTAAAGAAGCTTATGAA+TGG | - | chr5_1:25614051-25614070 | Msa0725770:CDS | 25.0% |
| ! | TGTTAAAGAAGCTTATGAAT+GGG | - | chr5_1:25614052-25614071 | Msa0725770:CDS | 25.0% |
| ! | AAAATCATCGTCACAAAATA+GGG | + | chr5_1:25614395-25614414 | None:intergenic | 25.0% |
| ! | AAAAATCATCGTCACAAAAT+AGG | + | chr5_1:25614396-25614415 | None:intergenic | 25.0% |
| !!! | ATGATTTTTTTATGTCTCTG+TGG | - | chr5_1:25614407-25614426 | Msa0725770:intron | 25.0% |
| ! | ATCATCTTCCACAATTTAAA+GGG | - | chr5_1:25614517-25614536 | Msa0725770:intron | 25.0% |
| ! | TAGTTGCAATGTTCAAATTA+CGG | + | chr5_1:25614782-25614801 | None:intergenic | 25.0% |
| ! | GCAATTGCAATACAATTAAA+TGG | + | chr5_1:25614871-25614890 | None:intergenic | 25.0% |
| !! | TTTTCTTGCAAAACTTTCTA+AGG | + | chr5_1:25615637-25615656 | None:intergenic | 25.0% |
| ! | TACAAAGTTCATGGTATAAA+GGG | - | chr5_1:25615719-25615738 | Msa0725770:intron | 25.0% |
| !! | TATAAAGGGATTAAAGGTAT+TGG | - | chr5_1:25615733-25615752 | Msa0725770:intron | 25.0% |
| ! | AATCAGTGTGTGAAAAAATA+AGG | - | chr5_1:25615916-25615935 | Msa0725770:intron | 25.0% |
| !! | ATTTTACAACACACTTTGTT+AGG | + | chr5_1:25615959-25615978 | None:intergenic | 25.0% |
| TTCATAGTACTTGCAAATTG+TGG | - | chr5_1:25613245-25613264 | Msa0725770:three_prime_UTR | 30.0% | |
| TTTGTCTGTTATGTTAGTCA+GGG | - | chr5_1:25613344-25613363 | Msa0725770:exon | 30.0% | |
| CAATTTCATTTCCACAATGT+AGG | - | chr5_1:25613660-25613679 | Msa0725770:CDS | 30.0% | |
| ATTACTAAGGGATTTCCATA+TGG | + | chr5_1:25613837-25613856 | None:intergenic | 30.0% | |
| TTATTGTCTTTCTGAATCAG+TGG | + | chr5_1:25613882-25613901 | None:intergenic | 30.0% | |
| ! | TGAATTTAGTCTTCTCGAAA+CGG | - | chr5_1:25614130-25614149 | Msa0725770:CDS | 30.0% |
| TCCAAACTATAACCATTGTA+GGG | + | chr5_1:25614164-25614183 | None:intergenic | 30.0% | |
| ! | TTATAGTTTGGAGCATATCA+GGG | - | chr5_1:25614172-25614191 | Msa0725770:CDS | 30.0% |
| AGCATCATCTTTCATTACAA+TGG | - | chr5_1:25614311-25614330 | Msa0725770:intron | 30.0% | |
| ATTCATCTTCCATAGTTTCA+AGG | - | chr5_1:25614453-25614472 | Msa0725770:intron | 30.0% | |
| CATCATCTTCCACAATTTAA+AGG | - | chr5_1:25614516-25614535 | Msa0725770:intron | 30.0% | |
| ! | CAATTTTACTTGTGATGCAA+GGG | - | chr5_1:25614593-25614612 | Msa0725770:intron | 30.0% |
| ! | ATCTGAAATTGCATTTGCAA+CGG | + | chr5_1:25614621-25614640 | None:intergenic | 30.0% |
| AAATGCAATTTCAGATATCC+CGG | - | chr5_1:25614625-25614644 | Msa0725770:intron | 30.0% | |
| AAGATTTCAAAAAACGGTCT+AGG | - | chr5_1:25614809-25614828 | Msa0725770:intron | 30.0% | |
| ATCAAGTTCATCAAGAGTAA+TGG | - | chr5_1:25615044-25615063 | Msa0725770:CDS | 30.0% | |
| TGTTTCATTTCATGAACTAG+TGG | + | chr5_1:25615224-25615243 | None:intergenic | 30.0% | |
| ACTAGTTCATGAAATGAAAC+AGG | - | chr5_1:25615223-25615242 | Msa0725770:CDS | 30.0% | |
| ACTAAGCATCAATGAATCAA+GGG | - | chr5_1:25615382-25615401 | Msa0725770:intron | 30.0% | |
| AAGGAAAAATGCAATAGACT+TGG | + | chr5_1:25615573-25615592 | None:intergenic | 30.0% | |
| ! | AAGTCTATTGCATTTTTCCT+TGG | - | chr5_1:25615572-25615591 | Msa0725770:intron | 30.0% |
| AGAACTATCTATCACTATCA+TGG | - | chr5_1:25615662-25615681 | Msa0725770:intron | 30.0% | |
| GATAAAGACTACAAAGTTCA+TGG | - | chr5_1:25615710-25615729 | Msa0725770:intron | 30.0% | |
| CTACAAAGTTCATGGTATAA+AGG | - | chr5_1:25615718-25615737 | Msa0725770:intron | 30.0% | |
| TCATGGTATAAAGGGATTAA+AGG | - | chr5_1:25615727-25615746 | Msa0725770:intron | 30.0% | |
| TATCAAGATTCTCCAACAAA+GGG | - | chr5_1:25615829-25615848 | Msa0725770:intron | 30.0% | |
| ! | TGTGAAAAAATAAGGCATCT+AGG | - | chr5_1:25615924-25615943 | Msa0725770:intron | 30.0% |
| ! | CGAAGCATAATGAGCTTTAT+AGG | + | chr5_1:25613302-25613321 | None:intergenic | 35.0% |
| GTTTGTCTGTTATGTTAGTC+AGG | - | chr5_1:25613343-25613362 | Msa0725770:exon | 35.0% | |
| ! | TGAAGTGTCAATGCTACATA+AGG | + | chr5_1:25613386-25613405 | None:intergenic | 35.0% |
| !! | GTAGCATTGACACTTCAAAT+TGG | - | chr5_1:25613389-25613408 | Msa0725770:CDS | 35.0% |
| ! | TTTTGGACACTGACATGTAT+TGG | + | chr5_1:25613426-25613445 | None:intergenic | 35.0% |
| ! | TAAAAGTGTATGTGTCGTGT+TGG | + | chr5_1:25613449-25613468 | None:intergenic | 35.0% |
| !!! | TATCGATGTCAGTGTCATTT+TGG | - | chr5_1:25613511-25613530 | Msa0725770:CDS | 35.0% |
| TCAAACTCCTTCTATTGTCT+TGG | - | chr5_1:25613569-25613588 | Msa0725770:CDS | 35.0% | |
| ATTGTCTCTTACCTACATTG+TGG | + | chr5_1:25613674-25613693 | None:intergenic | 35.0% | |
| ACAATGTAGGTAAGAGACAA+TGG | - | chr5_1:25613673-25613692 | Msa0725770:CDS | 35.0% | |
| GATTACATTATAGTTGGAGG+AGG | - | chr5_1:25613738-25613757 | Msa0725770:CDS | 35.0% | |
| ! | TCTGTGCTACTAATAGAAAG+AGG | - | chr5_1:25613804-25613823 | Msa0725770:CDS | 35.0% |
| CAAAGATTCACTTCAGAAGA+TGG | - | chr5_1:25613918-25613937 | Msa0725770:CDS | 35.0% | |
| TAAAGAAGCTTATGAATGGG+TGG | - | chr5_1:25614055-25614074 | Msa0725770:CDS | 35.0% | |
| ! | GAATTTAGTCTTCTCGAAAC+GGG | - | chr5_1:25614131-25614150 | Msa0725770:CDS | 35.0% |
| CTCCAAACTATAACCATTGT+AGG | + | chr5_1:25614165-25614184 | None:intergenic | 35.0% | |
| ! | GTTATAGTTTGGAGCATATC+AGG | - | chr5_1:25614171-25614190 | Msa0725770:CDS | 35.0% |
| ! | TATAGTTTGGAGCATATCAG+GGG | - | chr5_1:25614173-25614192 | Msa0725770:CDS | 35.0% |
| TAGCTGCAATGTTTAAACTG+CGG | + | chr5_1:25614565-25614584 | None:intergenic | 35.0% | |
| ! | GCAATTTTACTTGTGATGCA+AGG | - | chr5_1:25614592-25614611 | Msa0725770:intron | 35.0% |
| ! | TCTGAAATTGCATTTGCAAC+GGG | + | chr5_1:25614620-25614639 | None:intergenic | 35.0% |
| TGCTATTGCAGCCATAATTA+TGG | - | chr5_1:25614659-25614678 | Msa0725770:intron | 35.0% | |
| CAAGGTGAATGCCATAATTA+TGG | + | chr5_1:25614673-25614692 | None:intergenic | 35.0% | |
| AAGATTGTTGAAGTTGTGCA+AGG | + | chr5_1:25614691-25614710 | None:intergenic | 35.0% | |
| GACAGGAACATCTAATTGTA+TGG | + | chr5_1:25614744-25614763 | None:intergenic | 35.0% | |
| TTGTATTGCAATTGCAATCG+TGG | - | chr5_1:25614876-25614895 | Msa0725770:intron | 35.0% | |
| AGTCATGATATCTCCTAATG+TGG | + | chr5_1:25614902-25614921 | None:intergenic | 35.0% | |
| TTCTTGAAATTTGACCACTC+AGG | - | chr5_1:25614993-25615012 | Msa0725770:CDS | 35.0% | |
| AGGTGACAAGAATGAAACAA+GGG | - | chr5_1:25615013-25615032 | Msa0725770:CDS | 35.0% | |
| !! | ATGGTTTGGTTTCTTGATGT+AGG | + | chr5_1:25615093-25615112 | None:intergenic | 35.0% |
| AACCAAACCATTCAACTTCA+AGG | - | chr5_1:25615102-25615121 | Msa0725770:CDS | 35.0% | |
| ACCAAACCATTCAACTTCAA+GGG | - | chr5_1:25615103-25615122 | Msa0725770:CDS | 35.0% | |
| ATATTATCAGCAGGTGCATT+AGG | - | chr5_1:25615134-25615153 | Msa0725770:CDS | 35.0% | |
| ! | TCTCAACTTTTGCTTCTAAG+TGG | - | chr5_1:25615161-25615180 | Msa0725770:CDS | 35.0% |
| GTTCATGAAATGAAACAGGT+TGG | - | chr5_1:25615227-25615246 | Msa0725770:CDS | 35.0% | |
| CAACTAAGATTGCTATGCAA+GGG | + | chr5_1:25615271-25615290 | None:intergenic | 35.0% | |
| TCAACTAAGATTGCTATGCA+AGG | + | chr5_1:25615272-25615291 | None:intergenic | 35.0% | |
| CTTGATTCATTGATGCTTAG+TGG | + | chr5_1:25615383-25615402 | None:intergenic | 35.0% | |
| CACTAAGCATCAATGAATCA+AGG | - | chr5_1:25615381-25615400 | Msa0725770:intron | 35.0% | |
| ATAGCAATGCCTCTTTCAAA+AGG | - | chr5_1:25615422-25615441 | Msa0725770:CDS | 35.0% | |
| TAGCAATGCCTCTTTCAAAA+GGG | - | chr5_1:25615423-25615442 | Msa0725770:CDS | 35.0% | |
| GATAGTTGAATTTCACAGCA+GGG | + | chr5_1:25615484-25615503 | None:intergenic | 35.0% | |
| AGATAGTTGAATTTCACAGC+AGG | + | chr5_1:25615485-25615504 | None:intergenic | 35.0% | |
| ACTATCTATCACTATCATGG+TGG | - | chr5_1:25615665-25615684 | Msa0725770:intron | 35.0% | |
| !! | AAGGGATTAAAGGTATTGGA+TGG | - | chr5_1:25615737-25615756 | Msa0725770:intron | 35.0% |
| GTATCAAGATTCTCCAACAA+AGG | - | chr5_1:25615828-25615847 | Msa0725770:intron | 35.0% | |
| ! | AGCTTTATAGGCATACCTTG+AGG | + | chr5_1:25613290-25613309 | None:intergenic | 40.0% |
| GTTAGTCAGGGTTTGAATTC+TGG | - | chr5_1:25613356-25613375 | Msa0725770:exon | 40.0% | |
| AGTGTCAATGCTACATAAGG+AGG | + | chr5_1:25613383-25613402 | None:intergenic | 40.0% | |
| !!! | TGTATGTGTCGTGTTGGTTT+TGG | + | chr5_1:25613443-25613462 | None:intergenic | 40.0% |
| TCTGATAGAGTAGCTGCTAA+AGG | + | chr5_1:25613777-25613796 | None:intergenic | 40.0% | |
| ! | GTGCTACTAATAGAAAGAGG+TGG | - | chr5_1:25613807-25613826 | Msa0725770:CDS | 40.0% |
| AATGTGAGAGGAAGAGTTCT+TGG | - | chr5_1:25613948-25613967 | Msa0725770:CDS | 40.0% | |
| TGCCATGGTGTGAGAAAAAA+GGG | + | chr5_1:25614101-25614120 | None:intergenic | 40.0% | |
| TTGCCATGGTGTGAGAAAAA+AGG | + | chr5_1:25614102-25614121 | None:intergenic | 40.0% | |
| AATTCAGCAACAGATTGCCA+TGG | + | chr5_1:25614116-25614135 | None:intergenic | 40.0% | |
| GCCCTACAATGGTTATAGTT+TGG | - | chr5_1:25614160-25614179 | Msa0725770:CDS | 40.0% | |
| AAACACACTCCCAGAAATCT+TGG | + | chr5_1:25614201-25614220 | None:intergenic | 40.0% | |
| ! | ATTTCTGGGAGTGTGTTTGA+TGG | - | chr5_1:25614203-25614222 | Msa0725770:CDS | 40.0% |
| ACAAGAACTGTGAGGTTCTT+TGG | + | chr5_1:25614275-25614294 | None:intergenic | 40.0% | |
| TGGCATTTACAAGAACTGTG+AGG | + | chr5_1:25614283-25614302 | None:intergenic | 40.0% | |
| AAAGATGATGCTCTTCACTG+TGG | + | chr5_1:25614303-25614322 | None:intergenic | 40.0% | |
| TGAATGCCACAATATGGTTG+CGG | + | chr5_1:25614438-25614457 | None:intergenic | 40.0% | |
| GGAAGATGAATGCCACAATA+TGG | + | chr5_1:25614444-25614463 | None:intergenic | 40.0% | |
| CGACATGATCCTTGAAACTA+TGG | + | chr5_1:25614465-25614484 | None:intergenic | 40.0% | |
| TGACAGGACCCTTTAAATTG+TGG | + | chr5_1:25614528-25614547 | None:intergenic | 40.0% | |
| TTTCATTCTTGTCACCTGAG+TGG | + | chr5_1:25615010-25615029 | None:intergenic | 40.0% | |
| CAGGTGACAAGAATGAAACA+AGG | - | chr5_1:25615012-25615031 | Msa0725770:CDS | 40.0% | |
| AAGAATGAAACAAGGGCCAA+GGG | - | chr5_1:25615020-25615039 | Msa0725770:CDS | 40.0% | |
| CTTGATGAACTTGATACCCT+TGG | + | chr5_1:25615039-25615058 | None:intergenic | 40.0% | |
| CCAAACCATTCAACTTCAAG+GGG | - | chr5_1:25615104-25615123 | Msa0725770:CDS | 40.0% | |
| GGTGATGTCATATTATCAGC+AGG | - | chr5_1:25615125-25615144 | Msa0725770:CDS | 40.0% | |
| ! | CTTTTGCTTCTAAGTGGCAT+TGG | - | chr5_1:25615167-25615186 | Msa0725770:CDS | 40.0% |
| !! | GAAATGAAACAGGTTGGTCA+AGG | - | chr5_1:25615233-25615252 | Msa0725770:CDS | 40.0% |
| ! | GGATCAGGAAGTCTATTTTC+TGG | + | chr5_1:25615302-25615321 | None:intergenic | 40.0% |
| TCTGTTATGCCTGCAATTTG+TGG | + | chr5_1:25615326-25615345 | None:intergenic | 40.0% | |
| !! | TCAAGGTACCCTTTTGAAAG+AGG | + | chr5_1:25615434-25615453 | None:intergenic | 40.0% |
| GATCATTGTTGCTCAGTTCA+AGG | + | chr5_1:25615451-25615470 | None:intergenic | 40.0% | |
| AACTGAGCAACAATGATCCA+AGG | - | chr5_1:25615453-25615472 | Msa0725770:CDS | 40.0% | |
| TGAGTCACAGCAAAGCAAAT+TGG | - | chr5_1:25615595-25615614 | Msa0725770:intron | 40.0% | |
| !! | TCAACTTTTTCTGAGTCACC+AGG | - | chr5_1:25615761-25615780 | Msa0725770:intron | 40.0% |
| ! | AGCATCAAAAGTGTAGCCAT+AGG | + | chr5_1:25615794-25615813 | None:intergenic | 40.0% |
| ! | ATGGCTACACTTTTGATGCT+AGG | - | chr5_1:25615794-25615813 | Msa0725770:intron | 40.0% |
| ! | CTACACTTTTGATGCTAGGA+AGG | - | chr5_1:25615798-25615817 | Msa0725770:intron | 40.0% |
| GTTGGAGAATCTTGATACCT+TGG | + | chr5_1:25615826-25615845 | None:intergenic | 40.0% | |
| CAGATTCTGTTTCCCTTTGT+TGG | + | chr5_1:25615844-25615863 | None:intergenic | 40.0% | |
| TCTTTCCCTTCAGAACCTCA+AGG | - | chr5_1:25613272-25613291 | Msa0725770:three_prime_UTR | 45.0% | |
| !! | GCATACCTTGAGGTTCTGAA+GGG | + | chr5_1:25613280-25613299 | None:intergenic | 45.0% |
| CGTTCAGCCAAGACAATAGA+AGG | + | chr5_1:25613579-25613598 | None:intergenic | 45.0% | |
| GAGACAATGGCACATGACTT+CGG | - | chr5_1:25613686-25613705 | Msa0725770:CDS | 45.0% | |
| GCACATGACTTCGGATGTTA+AGG | - | chr5_1:25613695-25613714 | Msa0725770:CDS | 45.0% | |
| TCGGATGTTAAGGAAGTAGC+AGG | - | chr5_1:25613705-25613724 | Msa0725770:CDS | 45.0% | |
| CGGATGTTAAGGAAGTAGCA+GGG | - | chr5_1:25613706-25613725 | Msa0725770:CDS | 45.0% | |
| ! | ATAGTTGGAGGAGGTACATG+TGG | - | chr5_1:25613747-25613766 | Msa0725770:CDS | 45.0% |
| GAAAGAGGTGGTTCACCATA+TGG | - | chr5_1:25613819-25613838 | Msa0725770:CDS | 45.0% | |
| ! | GATGGTGTTAGCAATGTGAG+AGG | - | chr5_1:25613936-25613955 | Msa0725770:CDS | 45.0% |
| GGTGGCTCATCAGCTATAAA+TGG | - | chr5_1:25613969-25613988 | Msa0725770:CDS | 45.0% | |
| GGCTCATCAGCTATAAATGG+TGG | - | chr5_1:25613972-25613991 | Msa0725770:CDS | 45.0% | |
| CATGGTGTGAGAAAAAAGGG+AGG | + | chr5_1:25614098-25614117 | None:intergenic | 45.0% | |
| !!! | CTCCCTTTTTTCTCACACCA+TGG | - | chr5_1:25614096-25614115 | Msa0725770:CDS | 45.0% |
| ! | ACGGGAATTTTGCCCTACAA+TGG | - | chr5_1:25614149-25614168 | Msa0725770:CDS | 45.0% |
| ATCAGGGGAACCAAGATTTC+TGG | - | chr5_1:25614188-25614207 | Msa0725770:CDS | 45.0% | |
| TCAGGGGAACCAAGATTTCT+GGG | - | chr5_1:25614189-25614208 | Msa0725770:CDS | 45.0% | |
| !! | GGGAGTGTGTTTGATGGATT+TGG | - | chr5_1:25614209-25614228 | Msa0725770:CDS | 45.0% |
| TACCTCAGCTGATCTTCTTG+AGG | - | chr5_1:25614241-25614260 | Msa0725770:intron | 45.0% | |
| TGGAAGATGATGCGACAATC+AGG | + | chr5_1:25614508-25614527 | None:intergenic | 45.0% | |
| AATAGCATTGCATTCACGCC+GGG | + | chr5_1:25614646-25614665 | None:intergenic | 45.0% | |
| CAATAGCATTGCATTCACGC+CGG | + | chr5_1:25614647-25614666 | None:intergenic | 45.0% | |
| ATTGCAATCGTGGCCACATT+AGG | - | chr5_1:25614886-25614905 | Msa0725770:intron | 45.0% | |
| CAAGAATGAAACAAGGGCCA+AGG | - | chr5_1:25615019-25615038 | Msa0725770:CDS | 45.0% | |
| CCCCTTGAAGTTGAATGGTT+TGG | + | chr5_1:25615107-25615126 | None:intergenic | 45.0% | |
| CATCACCCCTTGAAGTTGAA+TGG | + | chr5_1:25615112-25615131 | None:intergenic | 45.0% | |
| GTTATGCCTGCAATTTGTGG+TGG | + | chr5_1:25615323-25615342 | None:intergenic | 45.0% | |
| TATCATGGTGGTTGCAGTGT+TGG | - | chr5_1:25615677-25615696 | Msa0725770:intron | 45.0% | |
| GTCACCAGGTACTAATCCTA+TGG | - | chr5_1:25615775-25615794 | Msa0725770:intron | 45.0% | |
| ! | GTAGCCATAGGATTAGTACC+TGG | + | chr5_1:25615782-25615801 | None:intergenic | 45.0% |
| !! | TTGATGCTAGGAAGGTACCA+AGG | - | chr5_1:25615806-25615825 | Msa0725770:intron | 45.0% |
| ! | GGCATACCTTGAGGTTCTGA+AGG | + | chr5_1:25613281-25613300 | None:intergenic | 50.0% |
| GTGAGAGGAAGAGTTCTTGG+TGG | - | chr5_1:25613951-25613970 | Msa0725770:CDS | 50.0% | |
| AGCCTCAAGAAGATCAGCTG+AGG | + | chr5_1:25614246-25614265 | None:intergenic | 50.0% | |
| TCAGCTGATCTTCTTGAGGC+TGG | - | chr5_1:25614245-25614264 | Msa0725770:intron | 50.0% | |
| !! | CCTGCAATTTGTGGTGGATC+AGG | + | chr5_1:25615317-25615336 | None:intergenic | 50.0% |
| CCTGATCCACCACAAATTGC+AGG | - | chr5_1:25615314-25615333 | Msa0725770:CDS | 50.0% | |
| TTCACAGCAGGGTTAAGCCT+TGG | + | chr5_1:25615473-25615492 | None:intergenic | 50.0% | |
| ! | TGCTTTGCTGTGACTCACCA+AGG | + | chr5_1:25615592-25615611 | None:intergenic | 50.0% |
| ! | TGGTTGCAGTGTTGGAACAG+TGG | - | chr5_1:25615685-25615704 | Msa0725770:intron | 50.0% |
| GCTGCACCGCAACCATATTG+TGG | - | chr5_1:25614429-25614448 | Msa0725770:intron | 55.0% | |
| AGGGTCCTGTCACAATTGCG+AGG | - | chr5_1:25614536-25614555 | Msa0725770:intron | 55.0% | |
| GTCCTGTCACAATTGCGAGG+TGG | - | chr5_1:25614539-25614558 | Msa0725770:intron | 55.0% | |
| GGCTGCATTGCACATGTGAC+AGG | + | chr5_1:25614761-25614780 | None:intergenic | 55.0% | |
| GGCCACCTCGCAATTGTGAC+AGG | + | chr5_1:25614544-25614563 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 25613188 | 25616062 | 25613188 | ID=Msa0725770;Name=Msa0725770 |
| chr5_1 | mRNA | 25613188 | 25616062 | 25613188 | ID=Msa0725770-mRNA-1;Parent=Msa0725770;Name=Msa0725770-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0|0.33|0.25|1|0.33|0.25|4|173|521 |
| chr5_1 | exon | 25613188 | 25614235 | 25613188 | ID=Msa0725770-mRNA-1:exon:9264;Parent=Msa0725770-mRNA-1 |
| chr5_1 | exon | 25614918 | 25615359 | 25614918 | ID=Msa0725770-mRNA-1:exon:9263;Parent=Msa0725770-mRNA-1 |
| chr5_1 | exon | 25615399 | 25615568 | 25615399 | ID=Msa0725770-mRNA-1:exon:9262;Parent=Msa0725770-mRNA-1 |
| chr5_1 | exon | 25615984 | 25616062 | 25615984 | ID=Msa0725770-mRNA-1:exon:9261;Parent=Msa0725770-mRNA-1 |
| chr5_1 | CDS | 25615984 | 25616062 | 25615984 | ID=Msa0725770-mRNA-1:cds;Parent=Msa0725770-mRNA-1 |
| chr5_1 | CDS | 25615399 | 25615568 | 25615399 | ID=Msa0725770-mRNA-1:cds;Parent=Msa0725770-mRNA-1 |
| chr5_1 | CDS | 25614918 | 25615359 | 25614918 | ID=Msa0725770-mRNA-1:cds;Parent=Msa0725770-mRNA-1 |
| chr5_1 | CDS | 25613361 | 25614235 | 25613361 | ID=Msa0725770-mRNA-1:cds;Parent=Msa0725770-mRNA-1 |
| chr5_1 | three_prime_UTR | 25613188 | 25613360 | 25613188 | ID=Msa0725770-mRNA-1:three_prime_utr;Parent=Msa0725770-mRNA-1 |
| Gene Sequence |
| Protein sequence |
