Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0937230 | XP_003618487.1 | 95.312 | 320 | 15 | 0 | 1 | 320 | 1 | 320 | 0.0 | 583 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0937230 | sp|Q84V25|ENOXE_FRAAN | 73.354 | 319 | 85 | 0 | 2 | 320 | 4 | 322 | 2.13e-161 | 456 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000050 | Msa0937230 | 0.800996 | 1.108693e-48 | -8.615850e-47 |
| Msa0005890 | Msa0937230 | 0.811109 | 8.250513e-51 | -8.615850e-47 |
| Msa0036870 | Msa0937230 | 0.800375 | 1.484217e-48 | -8.615850e-47 |
| Msa0081020 | Msa0937230 | 0.811305 | 7.481364e-51 | -8.615850e-47 |
| Msa0611210 | Msa0937230 | 0.810755 | 9.842433e-51 | -8.615850e-47 |
| Msa0674560 | Msa0937230 | 0.817048 | 4.035551e-52 | -8.615850e-47 |
| Msa0729270 | Msa0937230 | 0.803972 | 2.700268e-49 | -8.615850e-47 |
| Msa0738700 | Msa0937230 | 0.806167 | 9.382128e-50 | -8.615850e-47 |
| Msa0741220 | Msa0937230 | 0.810132 | 1.341662e-50 | -8.615850e-47 |
| Msa0741650 | Msa0937230 | 0.800773 | 1.231282e-48 | -8.615850e-47 |
| Msa0795870 | Msa0937230 | 0.801705 | 7.938873e-49 | -8.615850e-47 |
| Msa0807320 | Msa0937230 | 0.817093 | 3.942986e-52 | -8.615850e-47 |
| Msa0817760 | Msa0937230 | 0.802352 | 5.843157e-49 | -8.615850e-47 |
| Msa0829300 | Msa0937230 | 0.825681 | 4.105433e-54 | -8.615850e-47 |
| Msa0829330 | Msa0937230 | 0.802839 | 4.636410e-49 | -8.615850e-47 |
| Msa0833650 | Msa0937230 | 0.801277 | 9.715038e-49 | -8.615850e-47 |
| Msa0208030 | Msa0937230 | 0.805889 | 1.073620e-49 | -8.615850e-47 |
| Msa0208140 | Msa0937230 | 0.820256 | 7.549462e-53 | -8.615850e-47 |
| Msa0225100 | Msa0937230 | 0.840106 | 1.061945e-57 | -8.615850e-47 |
| Msa0225860 | Msa0937230 | 0.821158 | 4.685018e-53 | -8.615850e-47 |
| Msa0233320 | Msa0937230 | 0.800252 | 1.572253e-48 | -8.615850e-47 |
| Msa0435210 | Msa0937230 | 0.800737 | 1.252449e-48 | -8.615850e-47 |
| Msa0244640 | Msa0937230 | 0.800301 | 1.536905e-48 | -8.615850e-47 |
| Msa0260510 | Msa0937230 | 0.814962 | 1.179452e-51 | -8.615850e-47 |
| Msa0266180 | Msa0937230 | 0.822786 | 1.966353e-53 | -8.615850e-47 |
| Msa0287740 | Msa0937230 | 0.828634 | 8.061150e-55 | -8.615850e-47 |
| Msa0298470 | Msa0937230 | 0.804562 | 2.035778e-49 | -8.615850e-47 |
| Msa0307670 | Msa0937230 | 0.802461 | 5.548780e-49 | -8.615850e-47 |
| Msa0483100 | Msa0937230 | 0.812844 | 3.456102e-51 | -8.615850e-47 |
| Msa0513970 | Msa0937230 | 0.811200 | 7.884738e-51 | -8.615850e-47 |
| Msa0519830 | Msa0937230 | 0.800280 | 1.551886e-48 | -8.615850e-47 |
| Msa0528570 | Msa0937230 | 0.845751 | 3.341313e-59 | -8.615850e-47 |
| Msa0557460 | Msa0937230 | 0.828707 | 7.739960e-55 | -8.615850e-47 |
| Msa0580370 | Msa0937230 | 0.805467 | 1.316397e-49 | -8.615850e-47 |
| Msa0587620 | Msa0937230 | 0.812262 | 4.630790e-51 | -8.615850e-47 |
| Msa0859290 | Msa0937230 | 0.811699 | 6.143127e-51 | -8.615850e-47 |
| Msa0871880 | Msa0937230 | 0.905942 | 2.516438e-80 | -8.615850e-47 |
| Msa0876930 | Msa0937230 | 0.806116 | 9.615904e-50 | -8.615850e-47 |
| Msa0899970 | Msa0937230 | 0.806529 | 7.869013e-50 | -8.615850e-47 |
| Msa0905240 | Msa0937230 | 0.908044 | 2.627940e-81 | -8.615850e-47 |
| Msa0937230 | Msa0965080 | 0.800610 | 1.329224e-48 | -8.615850e-47 |
| Msa0937230 | Msa0965290 | 0.812117 | 4.982019e-51 | -8.615850e-47 |
| Msa0937230 | Msa0967870 | 0.836359 | 9.799994e-57 | -8.615850e-47 |
| Msa0937230 | Msa0974520 | 0.915973 | 3.111531e-85 | -8.615850e-47 |
| Msa0937230 | Msa0979180 | 0.808439 | 3.095967e-50 | -8.615850e-47 |
| Msa0937230 | Msa0999680 | 0.807407 | 5.131319e-50 | -8.615850e-47 |
| Msa0937230 | Msa1044680 | 0.807105 | 5.946496e-50 | -8.615850e-47 |
| Msa0937230 | Msa1132840 | 0.805570 | 1.252431e-49 | -8.615850e-47 |
| Msa0937230 | Msa1155170 | -0.808755 | 2.649391e-50 | -8.615850e-47 |
| Msa0937230 | Msa1186020 | 0.800026 | 1.747945e-48 | -8.615850e-47 |
| Msa0937230 | Msa1200890 | 0.810314 | 1.226077e-50 | -8.615850e-47 |
| Msa0937230 | Msa1320670 | 0.813756 | 2.178503e-51 | -8.615850e-47 |
| Msa0937230 | Msa1392580 | 0.816473 | 5.432245e-52 | -8.615850e-47 |
| Msa0937230 | Msa1397400 | 0.809813 | 1.571780e-50 | -8.615850e-47 |
| Msa0937230 | Msa1397740 | 0.816191 | 6.280013e-52 | -8.615850e-47 |
| Msa0937230 | Msa1414640 | 0.800805 | 1.212820e-48 | -8.615850e-47 |
| Msa0937230 | Msa1415540 | 0.838900 | 2.184938e-57 | -8.615850e-47 |
| Msa0937230 | Msa1417380 | 0.802482 | 5.494107e-49 | -8.615850e-47 |
| Msa0937230 | Msa1420950 | 0.814744 | 1.318315e-51 | -8.615850e-47 |
| Msa0937230 | Msa1427100 | 0.800585 | 1.345371e-48 | -8.615850e-47 |
| Msa0937230 | Msa1450100 | 0.836710 | 7.975886e-57 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0937230 | MtrunA17_Chr6g0453201 | 95.312 | 320 | 15 | 0 | 1 | 320 | 1 | 320 | 0.0 | 583 |
| Msa0937230 | MtrunA17_Chr6g0453191 | 92.517 | 294 | 22 | 0 | 1 | 294 | 1 | 294 | 0.0 | 519 |
| Msa0937230 | MtrunA17_Chr8g0365421 | 68.790 | 314 | 97 | 1 | 7 | 320 | 72 | 384 | 5.60e-155 | 439 |
| Msa0937230 | MtrunA17_Chr6g0466321 | 67.619 | 315 | 102 | 0 | 6 | 320 | 14 | 328 | 3.39e-148 | 419 |
| Msa0937230 | MtrunA17_Chr6g0465501 | 67.302 | 315 | 103 | 0 | 6 | 320 | 14 | 328 | 5.28e-147 | 416 |
| Msa0937230 | MtrunA17_Chr7g0228011 | 72.492 | 309 | 85 | 0 | 12 | 320 | 9 | 317 | 2.23e-146 | 414 |
| Msa0937230 | MtrunA17_Chr8g0351271 | 46.302 | 311 | 161 | 5 | 12 | 320 | 5 | 311 | 4.11e-86 | 262 |
| Msa0937230 | MtrunA17_Chr8g0351481 | 46.906 | 307 | 157 | 5 | 12 | 316 | 5 | 307 | 1.71e-85 | 260 |
| Msa0937230 | MtrunA17_Chr4g0015051 | 33.731 | 335 | 183 | 9 | 12 | 318 | 7 | 330 | 1.56e-39 | 141 |
| Msa0937230 | MtrunA17_Chr7g0235021 | 34.627 | 335 | 177 | 11 | 12 | 317 | 7 | 328 | 1.37e-38 | 139 |
| Msa0937230 | MtrunA17_Chr4g0014971 | 33.837 | 331 | 180 | 9 | 16 | 318 | 11 | 330 | 3.67e-38 | 138 |
| Msa0937230 | MtrunA17_Chr4g0014951 | 33.735 | 332 | 179 | 11 | 16 | 318 | 11 | 330 | 8.93e-38 | 137 |
| Msa0937230 | MtrunA17_Chr4g0015091 | 35.866 | 329 | 173 | 12 | 16 | 317 | 11 | 328 | 5.23e-37 | 135 |
| Msa0937230 | MtrunA17_Chr4g0014931 | 33.433 | 335 | 184 | 9 | 12 | 318 | 7 | 330 | 1.09e-36 | 134 |
| Msa0937230 | MtrunA17_Chr4g0014691 | 33.439 | 314 | 172 | 8 | 32 | 318 | 26 | 329 | 2.67e-36 | 133 |
| Msa0937230 | MtrunA17_Chr4g0014541 | 33.439 | 314 | 172 | 8 | 32 | 318 | 26 | 329 | 2.93e-36 | 133 |
| Msa0937230 | MtrunA17_Chr2g0316731 | 30.725 | 345 | 192 | 11 | 9 | 316 | 24 | 358 | 9.56e-31 | 119 |
| Msa0937230 | MtrunA17_Chr2g0281281 | 28.182 | 330 | 181 | 13 | 24 | 316 | 13 | 323 | 7.48e-27 | 107 |
| Msa0937230 | MtrunA17_Chr2g0281301 | 30.061 | 326 | 180 | 13 | 24 | 316 | 26 | 336 | 9.42e-27 | 107 |
| Msa0937230 | MtrunA17_Chr4g0045041 | 25.705 | 319 | 184 | 9 | 38 | 316 | 315 | 620 | 6.39e-20 | 90.5 |
| Msa0937230 | MtrunA17_Chr4g0045061 | 25.392 | 319 | 185 | 9 | 38 | 316 | 315 | 620 | 8.30e-20 | 90.1 |
| Msa0937230 | MtrunA17_Chr6g0465551 | 55.882 | 68 | 30 | 0 | 6 | 73 | 14 | 81 | 5.87e-19 | 80.1 |
| Msa0937230 | MtrunA17_Chr4g0015001 | 29.565 | 230 | 132 | 6 | 114 | 317 | 5 | 230 | 1.08e-16 | 77.8 |
| Msa0937230 | MtrunA17_Chr3g0128511 | 28.527 | 319 | 178 | 11 | 35 | 316 | 30 | 335 | 2.60e-15 | 75.5 |
| Msa0937230 | MtrunA17_Chr8g0385221 | 24.084 | 382 | 211 | 14 | 6 | 316 | 49 | 422 | 1.02e-12 | 68.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0937230 | AT1G23740.1 | 65.079 | 315 | 109 | 1 | 6 | 320 | 73 | 386 | 3.55e-143 | 409 |
| Msa0937230 | AT4G13010.1 | 32.530 | 332 | 182 | 10 | 16 | 318 | 11 | 329 | 1.45e-34 | 129 |
| Msa0937230 | AT3G15090.1 | 32.296 | 257 | 160 | 8 | 1 | 251 | 22 | 270 | 1.23e-28 | 114 |
| Msa0937230 | AT4G21580.1 | 28.909 | 339 | 192 | 12 | 12 | 317 | 2 | 324 | 2.00e-26 | 107 |
| Msa0937230 | AT4G21580.3 | 28.402 | 338 | 189 | 12 | 12 | 317 | 2 | 318 | 1.89e-25 | 104 |
| Msa0937230 | AT3G56460.1 | 29.487 | 312 | 173 | 10 | 39 | 316 | 38 | 336 | 2.84e-22 | 95.9 |
| Msa0937230 | AT1G49670.1 | 26.316 | 323 | 183 | 12 | 35 | 320 | 316 | 620 | 9.96e-19 | 87.4 |
| Msa0937230 | AT1G49670.2 | 25.291 | 344 | 183 | 12 | 35 | 320 | 316 | 643 | 8.05e-18 | 84.7 |
| Msa0937230 | AT3G45770.1 | 28.063 | 253 | 158 | 8 | 11 | 250 | 45 | 286 | 8.61e-15 | 74.7 |
| Msa0937230 | AT5G63620.2 | 24.929 | 353 | 190 | 12 | 35 | 316 | 76 | 424 | 1.59e-11 | 65.1 |
| Msa0937230 | AT5G63620.1 | 26.740 | 273 | 140 | 10 | 35 | 251 | 76 | 344 | 2.98e-11 | 64.3 |
Find 105 sgRNAs with CRISPR-Local
Find 172 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGAGAAATTGCTCCCTTATT+TGG | 0.131417 | 6_3:-8359718 | Msa0937230:CDS |
| GCTTTGAATTTGTACTATTT+TGG | 0.135987 | 6_3:-8359537 | Msa0937230:three_prime_UTR |
| AATCGTTAATGTTTGGAAAT+TGG | 0.177549 | 6_3:-8359433 | Msa0937230:three_prime_UTR |
| TTGCTCCCTTATTTGGAAAA+TGG | 0.203904 | 6_3:-8359711 | Msa0937230:CDS |
| ACAATTTAGAAATTTGATTA+TGG | 0.223884 | 6_3:-8359360 | Msa0937230:three_prime_UTR |
| AGTTGGATCTCTTGTTATTC+AGG | 0.225112 | 6_3:-8360581 | Msa0937230:intron |
| GAAAATGGAAAGGGACTCTT+AGG | 0.231928 | 6_3:+8359666 | None:intergenic |
| AGACCAAGTAAAGAAATTTA+AGG | 0.236139 | 6_3:-8360839 | Msa0937230:CDS |
| TCCAAACATTAACGATTTCT+TGG | 0.238936 | 6_3:+8359439 | None:intergenic |
| TCTTAATATCAACAGGATTA+AGG | 0.239762 | 6_3:+8361341 | None:intergenic |
| AAGACTTATTCTTCAATTTA+CGG | 0.250300 | 6_3:-8359212 | Msa0937230:three_prime_UTR |
| TCTAAATTGTTGAACAAAAT+CGG | 0.258209 | 6_3:+8359373 | None:intergenic |
| GTCTAATTGGTAGAATATAT+TGG | 0.278536 | 6_3:-8361804 | Msa0937230:five_prime_UTR |
| GCTTCCACAGCCTGAGAAAA+TGG | 0.285159 | 6_3:+8359651 | None:intergenic |
| CTTAATACTAATAGAGCTAT+TGG | 0.294082 | 6_3:-8359618 | Msa0937230:CDS |
| TCCAAGAAATCGTTAATGTT+TGG | 0.298797 | 6_3:-8359440 | Msa0937230:three_prime_UTR |
| AATCAAGCACATCAATTTCA+TGG | 0.301608 | 6_3:-8359559 | Msa0937230:three_prime_UTR |
| CAACCTTAAATTTCTTTACT+TGG | 0.321520 | 6_3:+8360836 | None:intergenic |
| GCTTGGGTTTACTCTCAATA+TGG | 0.324385 | 6_3:-8361454 | Msa0937230:CDS |
| TCAACAAAACTCAAATTTGA+TGG | 0.328083 | 6_3:+8360706 | None:intergenic |
| GGGATAGCTGGTGGAGTTCC+AGG | 0.335884 | 6_3:+8359771 | None:intergenic |
| AGATGAATTGGATACAAAAT+AGG | 0.340411 | 6_3:+8359160 | None:intergenic |
| AAGGTTGGAGATGAAGTTTA+TGG | 0.348171 | 6_3:-8360820 | Msa0937230:CDS |
| AATGACTATTATTTATAGAT+AGG | 0.351619 | 6_3:+8361613 | None:intergenic |
| AAATCTATACTTGTTCTTGC+AGG | 0.352032 | 6_3:-8360613 | Msa0937230:CDS |
| TGGCAAAGTGAAACCAATAT+TGG | 0.356227 | 6_3:-8359691 | Msa0937230:CDS |
| CAATGCATGAAGATGACTTT+GGG | 0.358930 | 6_3:+8361698 | None:intergenic |
| CTTAATATCAACAGGATTAA+GGG | 0.365726 | 6_3:+8361342 | None:intergenic |
| TTAATCCTGTTGATATTAAG+AGG | 0.366846 | 6_3:-8361339 | Msa0937230:CDS |
| ATACTTGTTCTTGCAGGTGC+TGG | 0.373033 | 6_3:-8360607 | Msa0937230:CDS |
| AGGGAATCCGATAGATGAAT+TGG | 0.384268 | 6_3:+8359148 | None:intergenic |
| GGACTCTTAGGGTCCAATAT+TGG | 0.387268 | 6_3:+8359678 | None:intergenic |
| CTAAATTGTTGAACAAAATC+GGG | 0.395081 | 6_3:+8359374 | None:intergenic |
| CAAGTTCATGAAGTGACTTT+GGG | 0.397238 | 6_3:+8361723 | None:intergenic |
| GGGTGTGGTGTACGGACATT+AGG | 0.398446 | 6_3:+8361403 | None:intergenic |
| GAGAAAATTGGGAGCAGACT+TGG | 0.401087 | 6_3:-8360043 | Msa0937230:CDS |
| ATGAGCACTTGATCTTCTCT+AGG | 0.411783 | 6_3:+8361382 | None:intergenic |
| TCAAGTTCATGAAGTGACTT+TGG | 0.414614 | 6_3:+8361722 | None:intergenic |
| TCCATCTCATACAAAAGCTT+GGG | 0.417415 | 6_3:-8361470 | Msa0937230:CDS |
| GAGGGCTCTTGGTCATTTCA+AGG | 0.427218 | 6_3:-8361320 | Msa0937230:CDS |
| CTTGCAGGTGCTGGAGGAGT+TGG | 0.436742 | 6_3:-8360598 | Msa0937230:CDS |
| TTAATACTAATAGAGCTATT+GGG | 0.439543 | 6_3:-8359617 | Msa0937230:CDS |
| TTCCATCTCATACAAAAGCT+TGG | 0.442056 | 6_3:-8361471 | Msa0937230:CDS |
| TAAGCAGTAATTATTGCTAA+AGG | 0.453400 | 6_3:+8360670 | None:intergenic |
| GCAATAATTACTGCTTATCA+AGG | 0.453809 | 6_3:-8360664 | Msa0937230:CDS |
| TTTGTATCCAATTCATCTAT+CGG | 0.455328 | 6_3:-8359155 | Msa0937230:three_prime_UTR |
| AAGCAGTAATTATTGCTAAA+GGG | 0.461547 | 6_3:+8360671 | None:intergenic |
| CACTTCAGATGGAGCTGTGT+TGG | 0.463500 | 6_3:-8359739 | Msa0937230:CDS |
| AGAGCCCTCTTAATATCAAC+AGG | 0.464124 | 6_3:+8361334 | None:intergenic |
| CCATCTGAAGTGAGTAAGAA+AGG | 0.465859 | 6_3:+8359750 | None:intergenic |
| CTTCTCTAGGGTGTGGTGTA+CGG | 0.470092 | 6_3:+8361395 | None:intergenic |
| GATTATTCATGCTCATGGAA+TGG | 0.475484 | 6_3:+8359578 | None:intergenic |
| TGCTTGATTATTCATGCTCA+TGG | 0.475707 | 6_3:+8359573 | None:intergenic |
| ATTATTCATGCTCATGGAAT+GGG | 0.479740 | 6_3:+8359579 | None:intergenic |
| TTACTACTCCTTTGATGACT+AGG | 0.482289 | 6_3:+8359128 | None:intergenic |
| CCTTTCTTACTCACTTCAGA+TGG | 0.482864 | 6_3:-8359750 | Msa0937230:CDS |
| TTTGTAATGTTCCCTCAACT+TGG | 0.483423 | 6_3:+8361777 | None:intergenic |
| GCAATGCATGAAGATGACTT+TGG | 0.486421 | 6_3:+8361697 | None:intergenic |
| ATGATCACTTTGCTACTAAG+AGG | 0.493924 | 6_3:+8361511 | None:intergenic |
| GTGAGTAAGAAAGGGATAGC+TGG | 0.494651 | 6_3:+8359759 | None:intergenic |
| CTTGTTCTTGCAGGTGCTGG+AGG | 0.496360 | 6_3:-8360604 | Msa0937230:CDS |
| TCTTAGTAGCAAAGTGATCA+TGG | 0.500602 | 6_3:-8361509 | Msa0937230:exon |
| GTTGATATTAAGAGGGCTCT+TGG | 0.500705 | 6_3:-8361331 | Msa0937230:CDS |
| GCTGGTGTGGTGGTTAGTGT+TGG | 0.504039 | 6_3:-8360862 | Msa0937230:CDS |
| CAAGTAAAGAAATTTAAGGT+TGG | 0.505260 | 6_3:-8360835 | Msa0937230:CDS |
| AGCTCTATTAGTATTAAGAT+AGG | 0.511118 | 6_3:+8359623 | None:intergenic |
| TACTACTCCTTTGATGACTA+GGG | 0.520657 | 6_3:+8359129 | None:intergenic |
| AAGTTCTTCATAATTCTCCT+TGG | 0.526568 | 6_3:+8360008 | None:intergenic |
| GCAGTGAAGGCTGCCAATGA+AGG | 0.527533 | 6_3:-8359819 | Msa0937230:CDS |
| TGAGCACTTGATCTTCTCTA+GGG | 0.532012 | 6_3:+8361383 | None:intergenic |
| TATAATGTTGAACTTTGTGT+TGG | 0.535951 | 6_3:+8361565 | None:intergenic |
| TGATAGTGAGAGGGCAGTGA+AGG | 0.544316 | 6_3:-8359832 | Msa0937230:CDS |
| ACTTGATCTTCTCTAGGGTG+TGG | 0.546580 | 6_3:+8361388 | None:intergenic |
| AGTAAGAAAGGGATAGCTGG+TGG | 0.548465 | 6_3:+8359762 | None:intergenic |
| CATCTGAAGTGAGTAAGAAA+GGG | 0.550733 | 6_3:+8359751 | None:intergenic |
| TGATTATTTGACATATAGCA+AGG | 0.561146 | 6_3:+8359103 | None:intergenic |
| ATTACAAAACAGAATGCTCC+TGG | 0.565613 | 6_3:-8361762 | Msa0937230:five_prime_UTR |
| ACACCAGCTACATCATATCC+TGG | 0.567906 | 6_3:+8360877 | None:intergenic |
| GTGCCAGGATATGATGTAGC+TGG | 0.572325 | 6_3:-8360880 | Msa0937230:CDS |
| ACAGCCTGAGAAAATGGAAA+GGG | 0.579911 | 6_3:+8359657 | None:intergenic |
| TATATTGGAGAGCCAAGTTG+AGG | 0.582794 | 6_3:-8361789 | Msa0937230:five_prime_UTR |
| ATATTGGAGAGCCAAGTTGA+GGG | 0.588411 | 6_3:-8361788 | Msa0937230:five_prime_UTR |
| TAATCCTGTTGATATTAAGA+GGG | 0.592527 | 6_3:-8361338 | Msa0937230:CDS |
| GATTGCAATCTTACTGGCAA+AGG | 0.597841 | 6_3:+8361286 | None:intergenic |
| CAAACATAGGTGATAGTGAG+AGG | 0.601174 | 6_3:-8359842 | Msa0937230:intron |
| GATTATTTGACATATAGCAA+GGG | 0.604863 | 6_3:+8359104 | None:intergenic |
| TCGGATTCCCTAGTCATCAA+AGG | 0.607035 | 6_3:-8359136 | Msa0937230:three_prime_UTR |
| GGTGATGTGAAGACTGTGCC+AGG | 0.607475 | 6_3:-8360895 | Msa0937230:intron |
| TGTTGAACAAAATCGGGCCA+CGG | 0.608584 | 6_3:+8359380 | None:intergenic |
| CACAGCCTGAGAAAATGGAA+AGG | 0.610247 | 6_3:+8359656 | None:intergenic |
| AGAAGATCAAGTGCTCATCA+AGG | 0.612803 | 6_3:-8361377 | Msa0937230:CDS |
| GGGAGCAATCTCATTCAACC+AGG | 0.615065 | 6_3:+8361744 | None:intergenic |
| AGGATATGATGTAGCTGGTG+TGG | 0.622214 | 6_3:-8360875 | Msa0937230:CDS |
| GTGAAGGCTGCCAATGAAGG+AGG | 0.627985 | 6_3:-8359816 | Msa0937230:CDS |
| TTGTGTCACGAGGCAAATTG+TGG | 0.629147 | 6_3:-8359266 | Msa0937230:three_prime_UTR |
| CTTGGCAATTGATTATACCA+AGG | 0.638101 | 6_3:-8360025 | Msa0937230:CDS |
| AAAATGGAAAGGGACTCTTA+GGG | 0.647115 | 6_3:+8359667 | None:intergenic |
| AAACATAGGTGATAGTGAGA+GGG | 0.648137 | 6_3:-8359841 | Msa0937230:intron |
| AAGTTCATGAAGTGACTTTG+GGG | 0.651070 | 6_3:+8361724 | None:intergenic |
| AATGCATGAAGATGACTTTG+GGG | 0.651359 | 6_3:+8361699 | None:intergenic |
| GTTGTGACAATATTACCACC+TGG | 0.669517 | 6_3:-8359789 | Msa0937230:CDS |
| ATATGATGTAGCTGGTGTGG+TGG | 0.678454 | 6_3:-8360872 | Msa0937230:CDS |
| ATACTTTGAATTGTGTCACG+AGG | 0.701252 | 6_3:-8359276 | Msa0937230:three_prime_UTR |
| GATGTGGTGTATGATGCAGT+AGG | 0.706324 | 6_3:-8359973 | Msa0937230:intron |
| ATAGCTGGTGGAGTTCCAGG+TGG | 0.759816 | 6_3:+8359774 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATGACTATTATTTATAGAT+AGG | + | chr6_3:8359345-8359364 | None:intergenic | 15.0% |
| !! | AGAGGAAAAAATATATAAAA+GGG | + | chr6_3:8359429-8359448 | None:intergenic | 15.0% |
| !! | AAGAGGAAAAAATATATAAA+AGG | + | chr6_3:8359430-8359449 | None:intergenic | 15.0% |
| !! | AATATAAATGAAAACTTCTA+CGG | + | chr6_3:8359749-8359768 | None:intergenic | 15.0% |
| !!! | AAACAAAGAATTTTTTTTAC+AGG | + | chr6_3:8359778-8359797 | None:intergenic | 15.0% |
| !! | AAAACATTATATATTTGCAA+AGG | + | chr6_3:8359805-8359824 | None:intergenic | 15.0% |
| !! | AGAAATAATTATGATTTAAG+TGG | + | chr6_3:8359932-8359951 | None:intergenic | 15.0% |
| !!! | CATTTTTTATTTTAATCTTG+TGG | - | chr6_3:8360604-8360623 | Msa0937230:CDS | 15.0% |
| !! | GGAATAAAGAAATATTAAAT+AGG | + | chr6_3:8361094-8361113 | None:intergenic | 15.0% |
| !! | ACAATTTAGAAATTTGATTA+TGG | - | chr6_3:8361595-8361614 | Msa0937230:five_prime_UTR | 15.0% |
| !!! | TTCATAACTTTTAGTCTAAT+TGG | - | chr6_3:8359138-8359157 | Msa0937230:three_prime_UTR | 20.0% |
| !! | AAATTATTTAATTACGCTGA+CGG | + | chr6_3:8359865-8359884 | None:intergenic | 20.0% |
| !! | ATAATTATGATTTAAGTGGA+CGG | + | chr6_3:8359928-8359947 | None:intergenic | 20.0% |
| !!! | TCTAAAATCACACATATAAT+TGG | - | chr6_3:8359949-8359968 | Msa0937230:intron | 20.0% |
| !! | AAGTTAAGGACAAATTATTT+GGG | + | chr6_3:8360726-8360745 | None:intergenic | 20.0% |
| !! | TAAGTTAAGGACAAATTATT+TGG | + | chr6_3:8360727-8360746 | None:intergenic | 20.0% |
| !!! | ACTTGAATTTTTGAGAAAAT+TGG | - | chr6_3:8360900-8360919 | Msa0937230:intron | 20.0% |
| !!! | CTTGAATTTTTGAGAAAATT+GGG | - | chr6_3:8360901-8360920 | Msa0937230:intron | 20.0% |
| !! | TATTTCTTTATTCCAAACAT+AGG | - | chr6_3:8361100-8361119 | Msa0937230:intron | 20.0% |
| !! | TTAATACTAATAGAGCTATT+GGG | - | chr6_3:8361338-8361357 | Msa0937230:CDS | 20.0% |
| !! | TCTAAATTGTTGAACAAAAT+CGG | + | chr6_3:8361585-8361604 | None:intergenic | 20.0% |
| !! | AAGACTTATTCTTCAATTTA+CGG | - | chr6_3:8361743-8361762 | Msa0937230:five_prime_UTR | 20.0% |
| ! | GTCTAATTGGTAGAATATAT+TGG | - | chr6_3:8359151-8359170 | Msa0937230:three_prime_UTR | 25.0% |
| ! | TATAATGTTGAACTTTGTGT+TGG | + | chr6_3:8359393-8359412 | None:intergenic | 25.0% |
| ! | CTTAATATCAACAGGATTAA+GGG | + | chr6_3:8359616-8359635 | None:intergenic | 25.0% |
| ! | TCTTAATATCAACAGGATTA+AGG | + | chr6_3:8359617-8359636 | None:intergenic | 25.0% |
| ! | TTAATCCTGTTGATATTAAG+AGG | - | chr6_3:8359616-8359635 | Msa0937230:CDS | 25.0% |
| ! | TAATCCTGTTGATATTAAGA+GGG | - | chr6_3:8359617-8359636 | Msa0937230:CDS | 25.0% |
| ! | CTTGAAATTTAAGTCATAGA+TGG | + | chr6_3:8359696-8359715 | None:intergenic | 25.0% |
| !! | AATTGGTAGTAATTTCTTGA+CGG | - | chr6_3:8359966-8359985 | Msa0937230:intron | 25.0% |
| !!! | GTTTTACTTTGATAACTTGT+TGG | + | chr6_3:8359993-8360012 | None:intergenic | 25.0% |
| !!! | GTTTTATTCTTTCTTTTGTG+TGG | - | chr6_3:8360039-8360058 | Msa0937230:CDS | 25.0% |
| ! | AGACCAAGTAAAGAAATTTA+AGG | - | chr6_3:8360116-8360135 | Msa0937230:intron | 25.0% |
| ! | CAACCTTAAATTTCTTTACT+TGG | + | chr6_3:8360122-8360141 | None:intergenic | 25.0% |
| !! | CAAGTAAAGAAATTTAAGGT+TGG | - | chr6_3:8360120-8360139 | Msa0937230:intron | 25.0% |
| ! | TTACACAATCCAAAAACTAT+TGG | - | chr6_3:8360177-8360196 | Msa0937230:intron | 25.0% |
| ! | TCAACAAAACTCAAATTTGA+TGG | + | chr6_3:8360252-8360271 | None:intergenic | 25.0% |
| ! | AAGCAGTAATTATTGCTAAA+GGG | + | chr6_3:8360287-8360306 | None:intergenic | 25.0% |
| ! | TAAGCAGTAATTATTGCTAA+AGG | + | chr6_3:8360288-8360307 | None:intergenic | 25.0% |
| ! | TTCAAAAGATACTCTATACT+AGG | - | chr6_3:8360410-8360429 | Msa0937230:intron | 25.0% |
| ! | TCTATACTAGGAAATAAGAT+AGG | - | chr6_3:8360422-8360441 | Msa0937230:intron | 25.0% |
| !! | AATGTTCATCTTATTTCCTA+GGG | + | chr6_3:8360588-8360607 | None:intergenic | 25.0% |
| !! | AAATGTTCATCTTATTTCCT+AGG | + | chr6_3:8360589-8360608 | None:intergenic | 25.0% |
| !! | TGTACTATTTTGTCATCTAA+TGG | - | chr6_3:8360794-8360813 | Msa0937230:CDS | 25.0% |
| !! | TGGAATGCAATTATTTGTTT+TGG | - | chr6_3:8360814-8360833 | Msa0937230:CDS | 25.0% |
| ! | ACTTACTGAAAAATTTGATG+TGG | - | chr6_3:8360966-8360985 | Msa0937230:intron | 25.0% |
| ! | AGCTCTATTAGTATTAAGAT+AGG | + | chr6_3:8361335-8361354 | None:intergenic | 25.0% |
| ! | CTTAATACTAATAGAGCTAT+TGG | - | chr6_3:8361337-8361356 | Msa0937230:CDS | 25.0% |
| !!! | GCTTTGAATTTGTACTATTT+TGG | - | chr6_3:8361418-8361437 | Msa0937230:CDS | 25.0% |
| ! | AATCGTTAATGTTTGGAAAT+TGG | - | chr6_3:8361522-8361541 | Msa0937230:five_prime_UTR | 25.0% |
| ! | CTAAATTGTTGAACAAAATC+GGG | + | chr6_3:8361584-8361603 | None:intergenic | 25.0% |
| ! | ATTTGATTATGGAAAAATCG+TGG | - | chr6_3:8361606-8361625 | Msa0937230:five_prime_UTR | 25.0% |
| ! | AGATGAATTGGATACAAAAT+AGG | + | chr6_3:8361798-8361817 | None:intergenic | 25.0% |
| ! | TTTGTATCCAATTCATCTAT+CGG | - | chr6_3:8361800-8361819 | Msa0937230:five_prime_UTR | 25.0% |
| ! | GATTATTTGACATATAGCAA+GGG | + | chr6_3:8361854-8361873 | None:intergenic | 25.0% |
| ! | TGATTATTTGACATATAGCA+AGG | + | chr6_3:8361855-8361874 | None:intergenic | 25.0% |
| ! | GACAAAGAACCAATAGTTTT+TGG | + | chr6_3:8360189-8360208 | None:intergenic | 30.0% |
| GCAATAATTACTGCTTATCA+AGG | - | chr6_3:8360291-8360310 | Msa0937230:intron | 30.0% | |
| AAATCTATACTTGTTCTTGC+AGG | - | chr6_3:8360342-8360361 | Msa0937230:intron | 30.0% | |
| !! | ATTTTAGTCTGACTTTAACG+AGG | + | chr6_3:8360489-8360508 | None:intergenic | 30.0% |
| ! | TTCTGGTCAATCTTTTGTTA+AGG | + | chr6_3:8360554-8360573 | None:intergenic | 30.0% |
| GTCAGATTATACTTATCTTC+TGG | + | chr6_3:8360668-8360687 | None:intergenic | 30.0% | |
| TTTGTCCTTAACTTATCCAT+TGG | - | chr6_3:8360732-8360751 | Msa0937230:CDS | 30.0% | |
| ATTGACCAATGGATAAGTTA+AGG | + | chr6_3:8360740-8360759 | None:intergenic | 30.0% | |
| ATCCATTGGTCAATATAAGT+TGG | - | chr6_3:8360746-8360765 | Msa0937230:CDS | 30.0% | |
| AAGTTCTTCATAATTCTCCT+TGG | + | chr6_3:8360950-8360969 | None:intergenic | 30.0% | |
| !!! | CTTTGCCATTTTCCAAATAA+GGG | + | chr6_3:8361252-8361271 | None:intergenic | 30.0% |
| !!! | ACTTTGCCATTTTCCAAATA+AGG | + | chr6_3:8361253-8361272 | None:intergenic | 30.0% |
| ATTATTCATGCTCATGGAAT+GGG | + | chr6_3:8361379-8361398 | None:intergenic | 30.0% | |
| AATCAAGCACATCAATTTCA+TGG | - | chr6_3:8361396-8361415 | Msa0937230:CDS | 30.0% | |
| TCCAAGAAATCGTTAATGTT+TGG | - | chr6_3:8361515-8361534 | Msa0937230:five_prime_UTR | 30.0% | |
| TCCAAACATTAACGATTTCT+TGG | + | chr6_3:8361519-8361538 | None:intergenic | 30.0% | |
| !! | TTGAAGTTCTAAAAAAACCG+TGG | - | chr6_3:8361558-8361577 | Msa0937230:five_prime_UTR | 30.0% |
| TTTGTAATGTTCCCTCAACT+TGG | + | chr6_3:8359181-8359200 | None:intergenic | 35.0% | |
| ATTACAAAACAGAATGCTCC+TGG | - | chr6_3:8359193-8359212 | Msa0937230:three_prime_UTR | 35.0% | |
| AAGTTCATGAAGTGACTTTG+GGG | + | chr6_3:8359234-8359253 | None:intergenic | 35.0% | |
| CAAGTTCATGAAGTGACTTT+GGG | + | chr6_3:8359235-8359254 | None:intergenic | 35.0% | |
| TCAAGTTCATGAAGTGACTT+TGG | + | chr6_3:8359236-8359255 | None:intergenic | 35.0% | |
| AATGCATGAAGATGACTTTG+GGG | + | chr6_3:8359259-8359278 | None:intergenic | 35.0% | |
| CAATGCATGAAGATGACTTT+GGG | + | chr6_3:8359260-8359279 | None:intergenic | 35.0% | |
| ATGATCACTTTGCTACTAAG+AGG | + | chr6_3:8359447-8359466 | None:intergenic | 35.0% | |
| TCTTAGTAGCAAAGTGATCA+TGG | - | chr6_3:8359446-8359465 | Msa0937230:three_prime_UTR | 35.0% | |
| TTCCATCTCATACAAAAGCT+TGG | - | chr6_3:8359484-8359503 | Msa0937230:three_prime_UTR | 35.0% | |
| TCCATCTCATACAAAAGCTT+GGG | - | chr6_3:8359485-8359504 | Msa0937230:three_prime_UTR | 35.0% | |
| AAGGTTGGAGATGAAGTTTA+TGG | - | chr6_3:8360135-8360154 | Msa0937230:intron | 35.0% | |
| ! | GAAAGAGTTGAATTTTCTGC+TGG | - | chr6_3:8360318-8360337 | Msa0937230:intron | 35.0% |
| !! | AGTTGGATCTCTTGTTATTC+AGG | - | chr6_3:8360374-8360393 | Msa0937230:intron | 35.0% |
| CTAGGGATTTACTTATCTTC+TGG | + | chr6_3:8360571-8360590 | None:intergenic | 35.0% | |
| CAGAAGATAAGTAAATCCCT+AGG | - | chr6_3:8360569-8360588 | Msa0937230:intron | 35.0% | |
| TTATCTTCTGGTCAAACCTA+CGG | + | chr6_3:8360656-8360675 | None:intergenic | 35.0% | |
| AGCCAACTTATATTGACCAA+TGG | + | chr6_3:8360751-8360770 | None:intergenic | 35.0% | |
| CTTGGCAATTGATTATACCA+AGG | - | chr6_3:8360930-8360949 | Msa0937230:intron | 35.0% | |
| ! | AAACATAGGTGATAGTGAGA+GGG | - | chr6_3:8361114-8361133 | Msa0937230:intron | 35.0% |
| ! | CATCTGAAGTGAGTAAGAAA+GGG | + | chr6_3:8361207-8361226 | None:intergenic | 35.0% |
| ! | TTGCTCCCTTATTTGGAAAA+TGG | - | chr6_3:8361244-8361263 | Msa0937230:intron | 35.0% |
| TGGCAAAGTGAAACCAATAT+TGG | - | chr6_3:8361264-8361283 | Msa0937230:intron | 35.0% | |
| AAAATGGAAAGGGACTCTTA+GGG | + | chr6_3:8361291-8361310 | None:intergenic | 35.0% | |
| GATTATTCATGCTCATGGAA+TGG | + | chr6_3:8361380-8361399 | None:intergenic | 35.0% | |
| TGCTTGATTATTCATGCTCA+TGG | + | chr6_3:8361385-8361404 | None:intergenic | 35.0% | |
| GAAAAATCGTGGCATGATTT+GGG | - | chr6_3:8361617-8361636 | Msa0937230:five_prime_UTR | 35.0% | |
| ATACTTTGAATTGTGTCACG+AGG | - | chr6_3:8361679-8361698 | Msa0937230:five_prime_UTR | 35.0% | |
| ! | TACTACTCCTTTGATGACTA+GGG | + | chr6_3:8361829-8361848 | None:intergenic | 35.0% |
| ! | TTACTACTCCTTTGATGACT+AGG | + | chr6_3:8361830-8361849 | None:intergenic | 35.0% |
| TATATTGGAGAGCCAAGTTG+AGG | - | chr6_3:8359166-8359185 | Msa0937230:three_prime_UTR | 40.0% | |
| ! | ATATTGGAGAGCCAAGTTGA+GGG | - | chr6_3:8359167-8359186 | Msa0937230:three_prime_UTR | 40.0% |
| GCAATGCATGAAGATGACTT+TGG | + | chr6_3:8359261-8359280 | None:intergenic | 40.0% | |
| ! | ACCCAAGCTTTTGTATGAGA+TGG | + | chr6_3:8359489-8359508 | None:intergenic | 40.0% |
| GCTTGGGTTTACTCTCAATA+TGG | - | chr6_3:8359501-8359520 | Msa0937230:three_prime_UTR | 40.0% | |
| TGAGCACTTGATCTTCTCTA+GGG | + | chr6_3:8359575-8359594 | None:intergenic | 40.0% | |
| ATGAGCACTTGATCTTCTCT+AGG | + | chr6_3:8359576-8359595 | None:intergenic | 40.0% | |
| AGAAGATCAAGTGCTCATCA+AGG | - | chr6_3:8359578-8359597 | Msa0937230:exon | 40.0% | |
| AGAGCCCTCTTAATATCAAC+AGG | + | chr6_3:8359624-8359643 | None:intergenic | 40.0% | |
| GTTGATATTAAGAGGGCTCT+TGG | - | chr6_3:8359624-8359643 | Msa0937230:CDS | 40.0% | |
| GATTGCAATCTTACTGGCAA+AGG | + | chr6_3:8359672-8359691 | None:intergenic | 40.0% | |
| GATGGTGATTGCAATCTTAC+TGG | + | chr6_3:8359678-8359697 | None:intergenic | 40.0% | |
| TAACGAGGTTCTCGTTTCTT+GGG | + | chr6_3:8360474-8360493 | None:intergenic | 40.0% | |
| TTAACGAGGTTCTCGTTTCT+TGG | + | chr6_3:8360475-8360494 | None:intergenic | 40.0% | |
| !!! | ATTATCAGGGTCGCTTTTCT+CGG | + | chr6_3:8360633-8360652 | None:intergenic | 40.0% |
| ! | GTCAAACCTACGGATTATCA+GGG | + | chr6_3:8360646-8360665 | None:intergenic | 40.0% |
| TGTTCCAACCAGAAATCGAA+CGG | - | chr6_3:8360695-8360714 | Msa0937230:CDS | 40.0% | |
| AGATGCCTCAAAAACATGCT+TGG | + | chr6_3:8360851-8360870 | None:intergenic | 40.0% | |
| CTCTCACTATCACCTATGTT+TGG | + | chr6_3:8361115-8361134 | None:intergenic | 40.0% | |
| ! | CAAACATAGGTGATAGTGAG+AGG | - | chr6_3:8361113-8361132 | Msa0937230:intron | 40.0% |
| ! | CACAACTTTTCCTCCTTCAT+TGG | + | chr6_3:8361152-8361171 | None:intergenic | 40.0% |
| GTTGTGACAATATTACCACC+TGG | - | chr6_3:8361166-8361185 | Msa0937230:intron | 40.0% | |
| ! | CCATCTGAAGTGAGTAAGAA+AGG | + | chr6_3:8361208-8361227 | None:intergenic | 40.0% |
| CCTTTCTTACTCACTTCAGA+TGG | - | chr6_3:8361205-8361224 | Msa0937230:intron | 40.0% | |
| GGAGAAATTGCTCCCTTATT+TGG | - | chr6_3:8361237-8361256 | Msa0937230:intron | 40.0% | |
| GAAAATGGAAAGGGACTCTT+AGG | + | chr6_3:8361292-8361311 | None:intergenic | 40.0% | |
| ACAGCCTGAGAAAATGGAAA+GGG | + | chr6_3:8361301-8361320 | None:intergenic | 40.0% | |
| GGAAAAATCGTGGCATGATT+TGG | - | chr6_3:8361616-8361635 | Msa0937230:five_prime_UTR | 40.0% | |
| !!! | ATTGTGGCGTGACTTTTTTG+TGG | - | chr6_3:8361705-8361724 | Msa0937230:five_prime_UTR | 40.0% |
| !!! | TTGTGGCGTGACTTTTTTGT+GGG | - | chr6_3:8361706-8361725 | Msa0937230:five_prime_UTR | 40.0% |
| AGGGAATCCGATAGATGAAT+TGG | + | chr6_3:8361810-8361829 | None:intergenic | 40.0% | |
| !! | ACTTGATCTTCTCTAGGGTG+TGG | + | chr6_3:8359570-8359589 | None:intergenic | 45.0% |
| TACGGTACACTCGCAAATTG+AGG | + | chr6_3:8359731-8359750 | None:intergenic | 45.0% | |
| ACACCAGCTACATCATATCC+TGG | + | chr6_3:8360081-8360100 | None:intergenic | 45.0% | |
| AGGATATGATGTAGCTGGTG+TGG | - | chr6_3:8360080-8360099 | Msa0937230:CDS | 45.0% | |
| ATATGATGTAGCTGGTGTGG+TGG | - | chr6_3:8360083-8360102 | Msa0937230:CDS | 45.0% | |
| ATACTTGTTCTTGCAGGTGC+TGG | - | chr6_3:8360348-8360367 | Msa0937230:intron | 45.0% | |
| ! | GGTCAAACCTACGGATTATC+AGG | + | chr6_3:8360647-8360666 | None:intergenic | 45.0% |
| !! | GAATCCGTTCGATTTCTGGT+TGG | + | chr6_3:8360702-8360721 | None:intergenic | 45.0% |
| !! | GCTAGCCAAGCATGTTTTTG+AGG | - | chr6_3:8360843-8360862 | Msa0937230:CDS | 45.0% |
| GAGAAAATTGGGAGCAGACT+TGG | - | chr6_3:8360912-8360931 | Msa0937230:intron | 45.0% | |
| GATGTGGTGTATGATGCAGT+AGG | - | chr6_3:8360982-8361001 | Msa0937230:intron | 45.0% | |
| AGTAAGAAAGGGATAGCTGG+TGG | + | chr6_3:8361196-8361215 | None:intergenic | 45.0% | |
| GTGAGTAAGAAAGGGATAGC+TGG | + | chr6_3:8361199-8361218 | None:intergenic | 45.0% | |
| GGACTCTTAGGGTCCAATAT+TGG | + | chr6_3:8361280-8361299 | None:intergenic | 45.0% | |
| ! | GAGTCCCTTTCCATTTTCTC+AGG | - | chr6_3:8361294-8361313 | Msa0937230:intron | 45.0% |
| CACAGCCTGAGAAAATGGAA+AGG | + | chr6_3:8361302-8361321 | None:intergenic | 45.0% | |
| ! | CTTTCCATTTTCTCAGGCTG+TGG | - | chr6_3:8361300-8361319 | Msa0937230:CDS | 45.0% |
| TGTTGAACAAAATCGGGCCA+CGG | + | chr6_3:8361578-8361597 | None:intergenic | 45.0% | |
| TTGTGTCACGAGGCAAATTG+TGG | - | chr6_3:8361689-8361708 | Msa0937230:five_prime_UTR | 45.0% | |
| TCGGATTCCCTAGTCATCAA+AGG | - | chr6_3:8361819-8361838 | Msa0937230:five_prime_UTR | 45.0% | |
| GGGAGCAATCTCATTCAACC+AGG | + | chr6_3:8359214-8359233 | None:intergenic | 50.0% | |
| !! | CTTCTCTAGGGTGTGGTGTA+CGG | + | chr6_3:8359563-8359582 | None:intergenic | 50.0% |
| GAGGGCTCTTGGTCATTTCA+AGG | - | chr6_3:8359635-8359654 | Msa0937230:CDS | 50.0% | |
| GTGCCAGGATATGATGTAGC+TGG | - | chr6_3:8360075-8360094 | Msa0937230:CDS | 50.0% | |
| AAGCGACCCTGATAATCCGT+AGG | - | chr6_3:8360637-8360656 | Msa0937230:CDS | 50.0% | |
| GGGAGAATCCGTTCGATTTC+TGG | + | chr6_3:8360706-8360725 | None:intergenic | 50.0% | |
| ! | TGATAGTGAGAGGGCAGTGA+AGG | - | chr6_3:8361123-8361142 | Msa0937230:intron | 50.0% |
| CACTTCAGATGGAGCTGTGT+TGG | - | chr6_3:8361216-8361235 | Msa0937230:intron | 50.0% | |
| GCTTCCACAGCCTGAGAAAA+TGG | + | chr6_3:8361307-8361326 | None:intergenic | 50.0% | |
| GGGTGTGGTGTACGGACATT+AGG | + | chr6_3:8359555-8359574 | None:intergenic | 55.0% | |
| GGTGATGTGAAGACTGTGCC+AGG | - | chr6_3:8360060-8360079 | Msa0937230:CDS | 55.0% | |
| GCTGGTGTGGTGGTTAGTGT+TGG | - | chr6_3:8360093-8360112 | Msa0937230:CDS | 55.0% | |
| !! | CTTGTTCTTGCAGGTGCTGG+AGG | - | chr6_3:8360351-8360370 | Msa0937230:intron | 55.0% |
| GCAGTGAAGGCTGCCAATGA+AGG | - | chr6_3:8361136-8361155 | Msa0937230:intron | 55.0% | |
| GTGAAGGCTGCCAATGAAGG+AGG | - | chr6_3:8361139-8361158 | Msa0937230:intron | 55.0% | |
| ATAGCTGGTGGAGTTCCAGG+TGG | + | chr6_3:8361184-8361203 | None:intergenic | 55.0% | |
| !! | CTTGCAGGTGCTGGAGGAGT+TGG | - | chr6_3:8360357-8360376 | Msa0937230:intron | 60.0% |
| GGGATAGCTGGTGGAGTTCC+AGG | + | chr6_3:8361187-8361206 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_3 | gene | 8359093 | 8361884 | 8359093 | ID=Msa0937230;Name=Msa0937230 |
| chr6_3 | mRNA | 8359093 | 8361884 | 8359093 | ID=Msa0937230-mRNA-1;Parent=Msa0937230;Name=Msa0937230-mRNA-1;_AED=0.02;_eAED=0.02;_QI=372|1|1|1|1|1|4|497|320 |
| chr6_3 | exon | 8359093 | 8359855 | 8359093 | ID=Msa0937230-mRNA-1:exon:2713;Parent=Msa0937230-mRNA-1 |
| chr6_3 | exon | 8359974 | 8360133 | 8359974 | ID=Msa0937230-mRNA-1:exon:2712;Parent=Msa0937230-mRNA-1 |
| chr6_3 | exon | 8360582 | 8360905 | 8360582 | ID=Msa0937230-mRNA-1:exon:2711;Parent=Msa0937230-mRNA-1 |
| chr6_3 | exon | 8361300 | 8361884 | 8361300 | ID=Msa0937230-mRNA-1:exon:2710;Parent=Msa0937230-mRNA-1 |
| chr6_3 | five_prime_UTR | 8361513 | 8361884 | 8361513 | ID=Msa0937230-mRNA-1:five_prime_utr;Parent=Msa0937230-mRNA-1 |
| chr6_3 | CDS | 8361300 | 8361512 | 8361300 | ID=Msa0937230-mRNA-1:cds;Parent=Msa0937230-mRNA-1 |
| chr6_3 | CDS | 8360582 | 8360905 | 8360582 | ID=Msa0937230-mRNA-1:cds;Parent=Msa0937230-mRNA-1 |
| chr6_3 | CDS | 8359974 | 8360133 | 8359974 | ID=Msa0937230-mRNA-1:cds;Parent=Msa0937230-mRNA-1 |
| chr6_3 | CDS | 8359590 | 8359855 | 8359590 | ID=Msa0937230-mRNA-1:cds;Parent=Msa0937230-mRNA-1 |
| chr6_3 | three_prime_UTR | 8359093 | 8359589 | 8359093 | ID=Msa0937230-mRNA-1:three_prime_utr;Parent=Msa0937230-mRNA-1 |
| Gene Sequence |
| Protein sequence |
