Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0905240 | XP_003618487.1 | 96.562 | 320 | 11 | 0 | 1 | 320 | 1 | 320 | 0.0 | 620 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0905240 | sp|Q84V25|ENOXE_FRAAN | 72.727 | 319 | 87 | 0 | 2 | 320 | 4 | 322 | 3.02e-161 | 455 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000050 | Msa0905240 | 0.805222 | 1.481219e-49 | -8.615850e-47 |
| Msa0001940 | Msa0905240 | 0.806143 | 9.491469e-50 | -8.615850e-47 |
| Msa0002580 | Msa0905240 | 0.817928 | 2.557102e-52 | -8.615850e-47 |
| Msa0005890 | Msa0905240 | 0.821464 | 3.983140e-53 | -8.615850e-47 |
| Msa0017950 | Msa0905240 | 0.802222 | 6.215179e-49 | -8.615850e-47 |
| Msa0036870 | Msa0905240 | 0.822618 | 2.150784e-53 | -8.615850e-47 |
| Msa0043470 | Msa0905240 | 0.800583 | 1.346504e-48 | -8.615850e-47 |
| Msa0050660 | Msa0905240 | 0.811322 | 7.419563e-51 | -8.615850e-47 |
| Msa0050700 | Msa0905240 | 0.816379 | 5.701776e-52 | -8.615850e-47 |
| Msa0050790 | Msa0905240 | 0.825144 | 5.501662e-54 | -8.615850e-47 |
| Msa0071850 | Msa0905240 | 0.808419 | 3.125659e-50 | -8.615850e-47 |
| Msa0071860 | Msa0905240 | 0.814901 | 1.216595e-51 | -8.615850e-47 |
| Msa0081020 | Msa0905240 | 0.814373 | 1.592171e-51 | -8.615850e-47 |
| Msa0081980 | Msa0905240 | 0.800026 | 1.747689e-48 | -8.615850e-47 |
| Msa0090400 | Msa0905240 | 0.810438 | 1.152548e-50 | -8.615850e-47 |
| Msa0094780 | Msa0905240 | 0.821062 | 4.930901e-53 | -8.615850e-47 |
| Msa0626450 | Msa0905240 | 0.803423 | 3.511032e-49 | -8.615850e-47 |
| Msa0658640 | Msa0905240 | 0.821162 | 4.675975e-53 | -8.615850e-47 |
| Msa0664600 | Msa0905240 | 0.803505 | 3.375820e-49 | -8.615850e-47 |
| Msa0703600 | Msa0905240 | 0.809535 | 1.803952e-50 | -8.615850e-47 |
| Msa0709200 | Msa0905240 | 0.809943 | 1.473579e-50 | -8.615850e-47 |
| Msa0735780 | Msa0905240 | 0.811056 | 8.473285e-51 | -8.615850e-47 |
| Msa0738700 | Msa0905240 | 0.809876 | 1.523459e-50 | -8.615850e-47 |
| Msa0741220 | Msa0905240 | 0.825224 | 5.268314e-54 | -8.615850e-47 |
| Msa0741650 | Msa0905240 | 0.802248 | 6.138252e-49 | -8.615850e-47 |
| Msa0795870 | Msa0905240 | 0.827796 | 1.283808e-54 | -8.615850e-47 |
| Msa0823820 | Msa0905240 | 0.802817 | 4.685722e-49 | -8.615850e-47 |
| Msa0824450 | Msa0905240 | 0.816575 | 5.153417e-52 | -8.615850e-47 |
| Msa0829300 | Msa0905240 | 0.815205 | 1.041532e-51 | -8.615850e-47 |
| Msa0829330 | Msa0905240 | 0.808839 | 2.543093e-50 | -8.615850e-47 |
| Msa0833650 | Msa0905240 | 0.822846 | 1.903691e-53 | -8.615850e-47 |
| Msa0835490 | Msa0905240 | 0.800432 | 1.445422e-48 | -8.615850e-47 |
| Msa0174450 | Msa0905240 | 0.819626 | 1.051985e-52 | -8.615850e-47 |
| Msa0182190 | Msa0905240 | 0.805260 | 1.454679e-49 | -8.615850e-47 |
| Msa0190570 | Msa0905240 | 0.819833 | 9.435783e-53 | -8.615850e-47 |
| Msa0191020 | Msa0905240 | 0.802371 | 5.792067e-49 | -8.615850e-47 |
| Msa0195890 | Msa0905240 | 0.801852 | 7.406119e-49 | -8.615850e-47 |
| Msa0208030 | Msa0905240 | 0.809678 | 1.680122e-50 | -8.615850e-47 |
| Msa0208140 | Msa0905240 | 0.822686 | 2.074442e-53 | -8.615850e-47 |
| Msa0213030 | Msa0905240 | 0.820750 | 5.817187e-53 | -8.615850e-47 |
| Msa0225100 | Msa0905240 | 0.842001 | 3.375638e-58 | -8.615850e-47 |
| Msa0225860 | Msa0905240 | 0.820438 | 6.857777e-53 | -8.615850e-47 |
| Msa0230800 | Msa0905240 | 0.827339 | 1.652598e-54 | -8.615850e-47 |
| Msa0233320 | Msa0905240 | 0.806884 | 6.622487e-50 | -8.615850e-47 |
| Msa0405680 | Msa0905240 | 0.822457 | 2.345255e-53 | -8.615850e-47 |
| Msa0430300 | Msa0905240 | 0.806444 | 8.201750e-50 | -8.615850e-47 |
| Msa0435210 | Msa0905240 | 0.803564 | 3.283253e-49 | -8.615850e-47 |
| Msa0436910 | Msa0905240 | 0.815689 | 8.129487e-52 | -8.615850e-47 |
| Msa0474730 | Msa0905240 | 0.801348 | 9.396157e-49 | -8.615850e-47 |
| Msa0242590 | Msa0905240 | 0.808418 | 3.127821e-50 | -8.615850e-47 |
| Msa0251710 | Msa0905240 | 0.804850 | 1.771889e-49 | -8.615850e-47 |
| Msa0260510 | Msa0905240 | 0.800752 | 1.243490e-48 | -8.615850e-47 |
| Msa0265850 | Msa0905240 | 0.814400 | 1.570771e-51 | -8.615850e-47 |
| Msa0266180 | Msa0905240 | 0.822801 | 1.950206e-53 | -8.615850e-47 |
| Msa0267110 | Msa0905240 | 0.810126 | 1.345764e-50 | -8.615850e-47 |
| Msa0270340 | Msa0905240 | 0.801503 | 8.731173e-49 | -8.615850e-47 |
| Msa0287740 | Msa0905240 | 0.831619 | 1.506231e-55 | -8.615850e-47 |
| Msa0292160 | Msa0905240 | 0.802263 | 6.096128e-49 | -8.615850e-47 |
| Msa0298470 | Msa0905240 | 0.812042 | 5.172301e-51 | -8.615850e-47 |
| Msa0321620 | Msa0905240 | 0.807620 | 4.624750e-50 | -8.615850e-47 |
| Msa0330380 | Msa0905240 | 0.807589 | 4.694520e-50 | -8.615850e-47 |
| Msa0483100 | Msa0905240 | 0.808487 | 3.022814e-50 | -8.615850e-47 |
| Msa0519820 | Msa0905240 | 0.800081 | 1.703911e-48 | -8.615850e-47 |
| Msa0528570 | Msa0905240 | 0.845920 | 3.005538e-59 | -8.615850e-47 |
| Msa0529030 | Msa0905240 | 0.810713 | 1.005152e-50 | -8.615850e-47 |
| Msa0557460 | Msa0905240 | 0.840108 | 1.060470e-57 | -8.615850e-47 |
| Msa0567170 | Msa0905240 | 0.818651 | 1.754225e-52 | -8.615850e-47 |
| Msa0580370 | Msa0905240 | 0.824309 | 8.655686e-54 | -8.615850e-47 |
| Msa0584420 | Msa0905240 | 0.805457 | 1.322433e-49 | -8.615850e-47 |
| Msa0587620 | Msa0905240 | 0.805540 | 1.270590e-49 | -8.615850e-47 |
| Msa0597270 | Msa0905240 | 0.812230 | 4.706614e-51 | -8.615850e-47 |
| Msa0600930 | Msa0905240 | 0.813484 | 2.500811e-51 | -8.615850e-47 |
| Msa0859290 | Msa0905240 | 0.800514 | 1.390823e-48 | -8.615850e-47 |
| Msa0863010 | Msa0905240 | 0.802044 | 6.760220e-49 | -8.615850e-47 |
| Msa0864940 | Msa0905240 | 0.800275 | 1.555382e-48 | -8.615850e-47 |
| Msa0871880 | Msa0905240 | 0.931990 | 1.665193e-94 | -8.615850e-47 |
| Msa0899970 | Msa0905240 | 0.802260 | 6.104630e-49 | -8.615850e-47 |
| Msa0905240 | Msa0937230 | 0.908044 | 2.627940e-81 | -8.615850e-47 |
| Msa0905240 | Msa0967870 | 0.829529 | 4.892502e-55 | -8.615850e-47 |
| Msa0905240 | Msa0974520 | 0.950386 | 1.834355e-108 | -8.615850e-47 |
| Msa0905240 | Msa0979180 | 0.801124 | 1.044134e-48 | -8.615850e-47 |
| Msa0905240 | Msa1042160 | 0.810600 | 1.063385e-50 | -8.615850e-47 |
| Msa0905240 | Msa1042190 | 0.812364 | 4.401346e-51 | -8.615850e-47 |
| Msa0905240 | Msa1044680 | 0.801135 | 1.038706e-48 | -8.615850e-47 |
| Msa0905240 | Msa1105780 | 0.800893 | 1.164143e-48 | -8.615850e-47 |
| Msa0905240 | Msa1132840 | 0.824627 | 7.287299e-54 | -8.615850e-47 |
| Msa0905240 | Msa1161810 | 0.816875 | 4.413781e-52 | -8.615850e-47 |
| Msa0905240 | Msa1167470 | 0.801525 | 8.640625e-49 | -8.615850e-47 |
| Msa0905240 | Msa1192570 | 0.812252 | 4.655375e-51 | -8.615850e-47 |
| Msa0905240 | Msa1200890 | 0.835853 | 1.317263e-56 | -8.615850e-47 |
| Msa0905240 | Msa1208950 | 0.831483 | 1.626873e-55 | -8.615850e-47 |
| Msa0905240 | Msa1226520 | 0.815089 | 1.105226e-51 | -8.615850e-47 |
| Msa0905240 | Msa1265650 | 0.814076 | 1.852440e-51 | -8.615850e-47 |
| Msa0905240 | Msa1303560 | 0.815333 | 9.755305e-52 | -8.615850e-47 |
| Msa0905240 | Msa1303650 | 0.816130 | 6.481105e-52 | -8.615850e-47 |
| Msa0905240 | Msa1320670 | 0.812203 | 4.770575e-51 | -8.615850e-47 |
| Msa0905240 | Msa1343180 | 0.804199 | 2.422788e-49 | -8.615850e-47 |
| Msa0905240 | Msa1397400 | 0.801873 | 7.331253e-49 | -8.615850e-47 |
| Msa0905240 | Msa1405460 | 0.806904 | 6.556850e-50 | -8.615850e-47 |
| Msa0905240 | Msa1414640 | 0.803211 | 3.885428e-49 | -8.615850e-47 |
| Msa0905240 | Msa1415540 | 0.836993 | 6.755193e-57 | -8.615850e-47 |
| Msa0905240 | Msa1420950 | 0.811775 | 5.913912e-51 | -8.615850e-47 |
| Msa0905240 | Msa1440630 | 0.825564 | 4.376564e-54 | -8.615850e-47 |
| Msa0905240 | Msa1450100 | 0.818198 | 2.221702e-52 | -8.615850e-47 |
| Msa0905240 | Msa1454140 | 0.811342 | 7.344900e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0905240 | MtrunA17_Chr6g0453201 | 96.562 | 320 | 11 | 0 | 1 | 320 | 1 | 320 | 0.0 | 620 |
| Msa0905240 | MtrunA17_Chr6g0453191 | 92.517 | 294 | 22 | 0 | 1 | 294 | 1 | 294 | 0.0 | 521 |
| Msa0905240 | MtrunA17_Chr8g0365421 | 67.834 | 314 | 100 | 1 | 7 | 320 | 72 | 384 | 5.81e-154 | 436 |
| Msa0905240 | MtrunA17_Chr6g0466321 | 66.667 | 315 | 105 | 0 | 6 | 320 | 14 | 328 | 2.25e-147 | 417 |
| Msa0905240 | MtrunA17_Chr6g0465501 | 66.349 | 315 | 106 | 0 | 6 | 320 | 14 | 328 | 3.66e-146 | 414 |
| Msa0905240 | MtrunA17_Chr7g0228011 | 71.197 | 309 | 89 | 0 | 12 | 320 | 9 | 317 | 7.43e-146 | 413 |
| Msa0905240 | MtrunA17_Chr8g0351271 | 46.624 | 311 | 160 | 5 | 12 | 320 | 5 | 311 | 2.45e-88 | 268 |
| Msa0905240 | MtrunA17_Chr8g0351481 | 47.231 | 307 | 156 | 5 | 12 | 316 | 5 | 307 | 1.14e-87 | 266 |
| Msa0905240 | MtrunA17_Chr4g0015051 | 34.441 | 331 | 178 | 9 | 16 | 318 | 11 | 330 | 5.22e-41 | 145 |
| Msa0905240 | MtrunA17_Chr4g0014951 | 34.036 | 332 | 178 | 10 | 16 | 318 | 11 | 330 | 2.99e-39 | 140 |
| Msa0905240 | MtrunA17_Chr4g0014971 | 34.441 | 331 | 178 | 10 | 16 | 318 | 11 | 330 | 3.80e-39 | 140 |
| Msa0905240 | MtrunA17_Chr4g0015091 | 36.170 | 329 | 172 | 12 | 16 | 317 | 11 | 328 | 1.09e-38 | 139 |
| Msa0905240 | MtrunA17_Chr7g0235021 | 35.045 | 331 | 173 | 12 | 16 | 317 | 11 | 328 | 2.21e-38 | 138 |
| Msa0905240 | MtrunA17_Chr4g0014931 | 33.433 | 335 | 184 | 9 | 12 | 318 | 7 | 330 | 2.77e-37 | 135 |
| Msa0905240 | MtrunA17_Chr4g0014541 | 32.803 | 314 | 174 | 8 | 32 | 318 | 26 | 329 | 4.45e-35 | 130 |
| Msa0905240 | MtrunA17_Chr4g0014691 | 32.484 | 314 | 175 | 7 | 32 | 318 | 26 | 329 | 5.10e-35 | 129 |
| Msa0905240 | MtrunA17_Chr2g0316731 | 31.098 | 328 | 180 | 10 | 26 | 316 | 40 | 358 | 3.26e-31 | 120 |
| Msa0905240 | MtrunA17_Chr2g0281301 | 30.368 | 326 | 179 | 13 | 24 | 316 | 26 | 336 | 1.32e-26 | 107 |
| Msa0905240 | MtrunA17_Chr2g0281281 | 28.485 | 330 | 180 | 13 | 24 | 316 | 13 | 323 | 1.65e-26 | 106 |
| Msa0905240 | MtrunA17_Chr4g0045041 | 26.183 | 317 | 181 | 9 | 40 | 316 | 317 | 620 | 3.41e-19 | 88.2 |
| Msa0905240 | MtrunA17_Chr4g0045061 | 26.032 | 315 | 180 | 9 | 42 | 316 | 319 | 620 | 4.11e-19 | 87.8 |
| Msa0905240 | MtrunA17_Chr6g0465551 | 54.412 | 68 | 31 | 0 | 6 | 73 | 14 | 81 | 2.52e-18 | 78.2 |
| Msa0905240 | MtrunA17_Chr4g0015001 | 30.000 | 230 | 131 | 6 | 114 | 317 | 5 | 230 | 2.41e-17 | 79.7 |
| Msa0905240 | MtrunA17_Chr3g0128511 | 28.527 | 319 | 178 | 11 | 35 | 316 | 30 | 335 | 3.00e-14 | 72.4 |
| Msa0905240 | MtrunA17_Chr8g0385221 | 24.834 | 302 | 163 | 11 | 6 | 251 | 49 | 342 | 5.96e-11 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0905240 | AT1G23740.1 | 63.492 | 315 | 114 | 1 | 6 | 320 | 73 | 386 | 2.49e-141 | 405 |
| Msa0905240 | AT4G13010.1 | 32.229 | 332 | 183 | 10 | 16 | 318 | 11 | 329 | 3.57e-34 | 127 |
| Msa0905240 | AT3G15090.1 | 33.463 | 257 | 157 | 8 | 1 | 251 | 22 | 270 | 2.01e-31 | 121 |
| Msa0905240 | AT4G21580.1 | 28.440 | 327 | 186 | 11 | 24 | 317 | 13 | 324 | 1.75e-25 | 104 |
| Msa0905240 | AT4G21580.3 | 27.914 | 326 | 183 | 11 | 24 | 317 | 13 | 318 | 1.16e-24 | 102 |
| Msa0905240 | AT3G56460.1 | 29.781 | 319 | 176 | 11 | 33 | 316 | 31 | 336 | 2.00e-21 | 93.6 |
| Msa0905240 | AT1G49670.1 | 26.646 | 319 | 179 | 12 | 35 | 316 | 316 | 616 | 5.35e-18 | 85.1 |
| Msa0905240 | AT1G49670.2 | 25.581 | 344 | 182 | 12 | 35 | 320 | 316 | 643 | 3.00e-17 | 82.8 |
| Msa0905240 | AT3G45770.1 | 27.835 | 291 | 182 | 9 | 11 | 284 | 45 | 324 | 6.29e-16 | 78.2 |
| Msa0905240 | AT5G61510.1 | 29.954 | 217 | 133 | 8 | 24 | 233 | 96 | 300 | 4.04e-12 | 67.0 |
Find 91 sgRNAs with CRISPR-Local
Find 203 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAATATTATAAATCATATT+TGG | 0.188332 | 6_2:-3255556 | Msa0905240:three_prime_UTR |
| GCGTTGAATTTGTACTAATT+TGG | 0.190832 | 6_2:-3255750 | Msa0905240:three_prime_UTR |
| AGTTGGATCTCTTGTTATTC+AGG | 0.225112 | 6_2:-3256802 | Msa0905240:intron |
| TTGAAACCTTACTTGGAAAA+TGG | 0.226818 | 6_2:-3255929 | Msa0905240:CDS |
| GAAAATGGAAAGGGACTCTT+AGG | 0.231928 | 6_2:+3255884 | None:intergenic |
| AGACCAAGTGAAGAAATTTA+AGG | 0.233255 | 6_2:-3257060 | Msa0905240:CDS |
| TCTTGGGTTTATTCTCAATA+TGG | 0.235456 | 6_2:-3257990 | Msa0905240:CDS |
| TCTTAATATCAACAGGATTA+AGG | 0.239762 | 6_2:+3257877 | None:intergenic |
| GTCTAATTGGTAGAATATAT+TGG | 0.278536 | 6_2:-3258336 | Msa0905240:five_prime_UTR |
| GCTTCCACAGCCTGAGAAAA+TGG | 0.285159 | 6_2:+3255869 | None:intergenic |
| CTTAATACTAATAGAGCTAT+TGG | 0.294082 | 6_2:-3255836 | Msa0905240:CDS |
| TTCCATCTCATACAAAATCT+TGG | 0.322336 | 6_2:-3258007 | Msa0905240:CDS |
| TCAACAAAACTCAAATTTGA+TGG | 0.328083 | 6_2:+3256927 | None:intergenic |
| GGGATAGCTGGTGGAGTTCC+AGG | 0.335884 | 6_2:+3255989 | None:intergenic |
| AAATCTCTACTTGTTCTTGC+AGG | 0.339592 | 6_2:-3256834 | Msa0905240:CDS |
| CTACTTGTTCTTGCAGGTGC+TGG | 0.342796 | 6_2:-3256828 | Msa0905240:CDS |
| AAGGTTGGAGATGAAGTTTA+TGG | 0.348171 | 6_2:-3257041 | Msa0905240:CDS |
| AATGACTATTATTTATAGAT+AGG | 0.351619 | 6_2:+3258149 | None:intergenic |
| AATCAAGCTCATATATTTCA+TGG | 0.355693 | 6_2:-3255772 | Msa0905240:three_prime_UTR |
| TGGCAAAGTGAAACCAATAT+TGG | 0.356227 | 6_2:-3255909 | Msa0905240:CDS |
| CAATGCATGAAGATGACTTT+GGG | 0.358930 | 6_2:+3258234 | None:intergenic |
| CCACAACTTATAAATATTCA+TGG | 0.359523 | 6_2:-3255616 | Msa0905240:three_prime_UTR |
| CTTAATATCAACAGGATTAA+GGG | 0.365726 | 6_2:+3257878 | None:intergenic |
| TTAATCCTGTTGATATTAAG+AGG | 0.366846 | 6_2:-3257875 | Msa0905240:CDS |
| ATTATTCATGCTCATGGAAT+GGG | 0.376291 | 6_2:+3255797 | None:intergenic |
| GGACTCTTAGGGTCCAATAT+TGG | 0.387268 | 6_2:+3255896 | None:intergenic |
| GGGTGTGGTGTAGGGACATT+AGG | 0.399291 | 6_2:+3257939 | None:intergenic |
| ATGAGCACTTGATCTTCTCT+AGG | 0.411783 | 6_2:+3257918 | None:intergenic |
| TCCATCTCATACAAAATCTT+GGG | 0.414600 | 6_2:-3258006 | Msa0905240:CDS |
| CAACCTTAAATTTCTTCACT+TGG | 0.416756 | 6_2:+3257057 | None:intergenic |
| GAGGGCTCTTGGTCATTTCA+AGG | 0.427218 | 6_2:-3257856 | Msa0905240:CDS |
| CTTCTCTAGGGTGTGGTGTA+GGG | 0.431980 | 6_2:+3257931 | None:intergenic |
| CTTGCAGGTGCTGGAGGAGT+TGG | 0.436742 | 6_2:-3256819 | Msa0905240:CDS |
| GTAATAAATCTCGAAGAGAT+AGG | 0.438575 | 6_2:-3255696 | Msa0905240:three_prime_UTR |
| TCTTCTCTAGGGTGTGGTGT+AGG | 0.438979 | 6_2:+3257930 | None:intergenic |
| TTAATACTAATAGAGCTATT+GGG | 0.439543 | 6_2:-3255835 | Msa0905240:CDS |
| GAGGAAATTGGGAGCAGACT+TGG | 0.439997 | 6_2:-3256260 | Msa0905240:CDS |
| AGAGAAATTGAAACCTTACT+TGG | 0.445997 | 6_2:-3255936 | Msa0905240:CDS |
| GCAATAATTACTGCTTATCA+AGG | 0.453016 | 6_2:-3256885 | Msa0905240:CDS |
| TAAGCAGTAATTATTGCTAA+AGG | 0.453400 | 6_2:+3256891 | None:intergenic |
| CCATCTGAAGTGAGTAAGAA+AGG | 0.457569 | 6_2:+3255968 | None:intergenic |
| AAGCAGTAATTATTGCTAAA+GGG | 0.461547 | 6_2:+3256892 | None:intergenic |
| AGAGCCCTCTTAATATCAAC+AGG | 0.464124 | 6_2:+3257870 | None:intergenic |
| CAGGTAATGTTCCCTCAACT+TGG | 0.471462 | 6_2:+3258309 | None:intergenic |
| GATTATTCATGCTCATGGAA+TGG | 0.472330 | 6_2:+3255796 | None:intergenic |
| GATTAGATTATTCATGCTCA+TGG | 0.475232 | 6_2:+3255791 | None:intergenic |
| CAAGTTGAGGGAACATTACC+TGG | 0.476334 | 6_2:-3258308 | Msa0905240:five_prime_UTR |
| CCTTTCTTACTCACTTCAGA+TGG | 0.482864 | 6_2:-3255968 | Msa0905240:CDS |
| GCAATGCATGAAGATGACTT+TGG | 0.486421 | 6_2:+3258233 | None:intergenic |
| ATGATCACTTTGCTACTAAG+AGG | 0.493924 | 6_2:+3258047 | None:intergenic |
| CCATGAATATTTATAAGTTG+TGG | 0.494167 | 6_2:+3255616 | None:intergenic |
| GTGAGTAAGAAAGGGATAGC+TGG | 0.494651 | 6_2:+3255977 | None:intergenic |
| CTTGTTCTTGCAGGTGCTGG+AGG | 0.496360 | 6_2:-3256825 | Msa0905240:CDS |
| TCTTAGTAGCAAAGTGATCA+TGG | 0.500602 | 6_2:-3258045 | Msa0905240:exon |
| GTTGATATTAAGAGGGCTCT+TGG | 0.500705 | 6_2:-3257867 | Msa0905240:CDS |
| GCTGGTGTGGTGGTTAGTGT+TGG | 0.504039 | 6_2:-3257083 | Msa0905240:CDS |
| AGCTCTATTAGTATTAAGAT+AGG | 0.511118 | 6_2:+3255841 | None:intergenic |
| GCAGTGAAGGCTGCCAATGA+AGG | 0.527533 | 6_2:-3256037 | Msa0905240:CDS |
| TGAGCACTTGATCTTCTCTA+GGG | 0.532012 | 6_2:+3257919 | None:intergenic |
| TATAATGTTGAACTTTGTGT+TGG | 0.535951 | 6_2:+3258101 | None:intergenic |
| TGATAGTGAGAGGGCAGTGA+AGG | 0.544316 | 6_2:-3256050 | Msa0905240:CDS |
| ACTTGATCTTCTCTAGGGTG+TGG | 0.546580 | 6_2:+3257924 | None:intergenic |
| CAAGTGAAGAAATTTAAGGT+TGG | 0.546713 | 6_2:-3257056 | Msa0905240:CDS |
| AGTAAGAAAGGGATAGCTGG+TGG | 0.548465 | 6_2:+3255980 | None:intergenic |
| CATCTGAAGTGAGTAAGAAA+GGG | 0.550733 | 6_2:+3255969 | None:intergenic |
| AATAGAAACCTTACTGGCAA+AGG | 0.550875 | 6_2:+3257822 | None:intergenic |
| AAGTTCATGAAGTGATGTAA+TGG | 0.551359 | 6_2:+3258260 | None:intergenic |
| ACACCAGCTACATCATATCC+TGG | 0.567906 | 6_2:+3257098 | None:intergenic |
| GTGCCAGGATATGATGTAGC+TGG | 0.572325 | 6_2:-3257101 | Msa0905240:CDS |
| GGTGGTGTGAAGACTGTGCC+AGG | 0.575981 | 6_2:-3257116 | Msa0905240:intron |
| ACAGCCTGAGAAAATGGAAA+GGG | 0.579911 | 6_2:+3255875 | None:intergenic |
| TATATTGGAGAGCCAAGTTG+AGG | 0.582794 | 6_2:-3258321 | Msa0905240:five_prime_UTR |
| ATATTGGAGAGCCAAGTTGA+GGG | 0.588411 | 6_2:-3258320 | Msa0905240:five_prime_UTR |
| TAATCCTGTTGATATTAAGA+GGG | 0.592527 | 6_2:-3257874 | Msa0905240:CDS |
| CTTGGCAATTGATTATACAA+AGG | 0.607180 | 6_2:-3256242 | Msa0905240:CDS |
| CACAGCCTGAGAAAATGGAA+AGG | 0.610247 | 6_2:+3255874 | None:intergenic |
| AGAAGATCAAGTGCTCATCA+AGG | 0.612803 | 6_2:-3257913 | Msa0905240:CDS |
| AGGATATGATGTAGCTGGTG+TGG | 0.622214 | 6_2:-3257096 | Msa0905240:CDS |
| GTGAAGGCTGCCAATGAAGG+AGG | 0.627985 | 6_2:-3256034 | Msa0905240:CDS |
| GGGAGCAATCTCATTCAACC+AGG | 0.644669 | 6_2:+3258290 | None:intergenic |
| AAAATGGAAAGGGACTCTTA+GGG | 0.647115 | 6_2:+3255885 | None:intergenic |
| AATGCATGAAGATGACTTTG+GGG | 0.651359 | 6_2:+3258235 | None:intergenic |
| AAGTGATGTAATGGTATACG+AGG | 0.652748 | 6_2:+3258269 | None:intergenic |
| TTATTCATGCTCATGGAATG+GGG | 0.664329 | 6_2:+3255798 | None:intergenic |
| GTTGTGACAATATTACCACC+TGG | 0.669517 | 6_2:-3256007 | Msa0905240:CDS |
| ATATGATGTAGCTGGTGTGG+TGG | 0.678454 | 6_2:-3257093 | Msa0905240:CDS |
| AAAATAATAATGAAATGACA+TGG | 0.680118 | 6_2:-3255648 | Msa0905240:three_prime_UTR |
| ACTAACTGAAAAGTTTGATG+TGG | 0.682063 | 6_2:-3256206 | Msa0905240:CDS |
| GATGTGGTGTATGATGCAGT+AGG | 0.683614 | 6_2:-3256190 | Msa0905240:intron |
| AGTGATGTAATGGTATACGA+GGG | 0.726862 | 6_2:+3258270 | None:intergenic |
| ATAGCTGGTGGAGTTCCAGG+TGG | 0.759816 | 6_2:+3255992 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATATTTAAATTAGTTAAG+GGG | + | chr6_2:3256224-3256243 | None:intergenic | 10.0% |
| !!! | TTTTGTATTTAAATTAGTTA+GGG | - | chr6_2:3256391-3256410 | Msa0905240:intron | 10.0% |
| !! | AAATTATTTAATTACACTAA+CGG | + | chr6_2:3256628-3256647 | None:intergenic | 10.0% |
| !!! | TAATTAAATAATTTTTACAC+CGG | - | chr6_2:3256634-3256653 | Msa0905240:intron | 10.0% |
| !! | AATGACTATTATTTATAGAT+AGG | + | chr6_2:3255804-3255823 | None:intergenic | 15.0% |
| !! | AGAGGAAAAAATATATAAAA+GGG | + | chr6_2:3255888-3255907 | None:intergenic | 15.0% |
| !! | AAGAGGAAAAAATATATAAA+AGG | + | chr6_2:3255889-3255908 | None:intergenic | 15.0% |
| !!! | GTTTTGTATTTAAATTAGTT+AGG | - | chr6_2:3256390-3256409 | Msa0905240:intron | 15.0% |
| !! | TTTGTATTTAAATTAGTTAG+GGG | - | chr6_2:3256392-3256411 | Msa0905240:intron | 15.0% |
| !! | AATATAAATGAAAACTTCTA+CGG | + | chr6_2:3256512-3256531 | None:intergenic | 15.0% |
| !!! | AAACAAAGAATTTTTTTTAC+AGG | + | chr6_2:3256541-3256560 | None:intergenic | 15.0% |
| !!! | AATGTTCATCTTATTTATTA+CGG | + | chr6_2:3257367-3257386 | None:intergenic | 15.0% |
| !! | CATAATACAACATATTAATA+AGG | + | chr6_2:3257811-3257830 | None:intergenic | 15.0% |
| !!! | GTCATTTCATTATTATTTTT+TGG | + | chr6_2:3258301-3258320 | None:intergenic | 15.0% |
| !! | AAAATAATAATGAAATGACA+TGG | - | chr6_2:3258302-3258321 | Msa0905240:five_prime_UTR | 15.0% |
| !!! | TTCATAACTTTTAGTCTAAT+TGG | - | chr6_2:3255601-3255620 | Msa0905240:three_prime_UTR | 20.0% |
| !! | TTGTATTTAAATTAGTTAGG+GGG | - | chr6_2:3256393-3256412 | Msa0905240:intron | 20.0% |
| !! | AAAACATTATATGTTTGGAA+CGG | + | chr6_2:3256568-3256587 | None:intergenic | 20.0% |
| !! | AAGCAAAAACATTATATGTT+TGG | + | chr6_2:3256573-3256592 | None:intergenic | 20.0% |
| !! | TTAATACTAATAGAGCTATT+GGG | - | chr6_2:3258115-3258134 | Msa0905240:five_prime_UTR | 20.0% |
| ! | GTCTAATTGGTAGAATATAT+TGG | - | chr6_2:3255614-3255633 | Msa0905240:three_prime_UTR | 25.0% |
| ! | TATAATGTTGAACTTTGTGT+TGG | + | chr6_2:3255852-3255871 | None:intergenic | 25.0% |
| ! | CTTAATATCAACAGGATTAA+GGG | + | chr6_2:3256075-3256094 | None:intergenic | 25.0% |
| ! | TCTTAATATCAACAGGATTA+AGG | + | chr6_2:3256076-3256095 | None:intergenic | 25.0% |
| ! | TTAATCCTGTTGATATTAAG+AGG | - | chr6_2:3256075-3256094 | Msa0905240:intron | 25.0% |
| ! | TAATCCTGTTGATATTAAGA+GGG | - | chr6_2:3256076-3256095 | Msa0905240:intron | 25.0% |
| ! | TACCATCTATGACTTAAATT+TGG | - | chr6_2:3256150-3256169 | Msa0905240:intron | 25.0% |
| !!! | CATTTTTGGCAGTTTTTTTT+TGG | - | chr6_2:3256323-3256342 | Msa0905240:CDS | 25.0% |
| ! | CTGATACTCTTGAAATTTAA+GGG | + | chr6_2:3256467-3256486 | None:intergenic | 25.0% |
| ! | ACTGATACTCTTGAAATTTA+AGG | + | chr6_2:3256468-3256487 | None:intergenic | 25.0% |
| !! | TCTAAAATCACACTTATGAT+TGG | - | chr6_2:3256712-3256731 | Msa0905240:intron | 25.0% |
| !! | TATGTTTGTGAGTTTCATTT+TGG | + | chr6_2:3256775-3256794 | None:intergenic | 25.0% |
| ! | TTACACAATCCAAAAACTAT+TGG | - | chr6_2:3256951-3256970 | Msa0905240:CDS | 25.0% |
| ! | TCAACAAAACTCAAATTTGA+TGG | + | chr6_2:3257026-3257045 | None:intergenic | 25.0% |
| ! | AAGCAGTAATTATTGCTAAA+GGG | + | chr6_2:3257061-3257080 | None:intergenic | 25.0% |
| ! | TAAGCAGTAATTATTGCTAA+AGG | + | chr6_2:3257062-3257081 | None:intergenic | 25.0% |
| !! | TTCTAAAGATACTCTATACT+AGG | - | chr6_2:3257184-3257203 | Msa0905240:intron | 25.0% |
| ! | GTTCTAATCAGAAATATAAC+AGG | - | chr6_2:3257286-3257305 | Msa0905240:intron | 25.0% |
| ! | ATTGAGCAATGAATAAGTTA+AGG | + | chr6_2:3257518-3257537 | None:intergenic | 25.0% |
| ! | ATTCATTGCTCAATATAAGT+TGG | - | chr6_2:3257524-3257543 | Msa0905240:intron | 25.0% |
| !! | TGTAGTATTTTGTCATCTAA+TGG | - | chr6_2:3257572-3257591 | Msa0905240:intron | 25.0% |
| !! | TGGAATGCAATTATTTGTTT+TGG | - | chr6_2:3257592-3257611 | Msa0905240:intron | 25.0% |
| !!! | CAACAAAACTTGATTTTTTG+AGG | - | chr6_2:3257671-3257690 | Msa0905240:intron | 25.0% |
| !!! | ACTTGATTTTTTGAGGAAAT+TGG | - | chr6_2:3257678-3257697 | Msa0905240:intron | 25.0% |
| !!! | CTTGATTTTTTGAGGAAATT+GGG | - | chr6_2:3257679-3257698 | Msa0905240:intron | 25.0% |
| ! | AGCTCTATTAGTATTAAGAT+AGG | + | chr6_2:3258112-3258131 | None:intergenic | 25.0% |
| ! | CTTAATACTAATAGAGCTAT+TGG | - | chr6_2:3258114-3258133 | Msa0905240:five_prime_UTR | 25.0% |
| ! | AATCAAGCTCATATATTTCA+TGG | - | chr6_2:3258178-3258197 | Msa0905240:five_prime_UTR | 25.0% |
| ! | CCATGAATATTTATAAGTTG+TGG | + | chr6_2:3258337-3258356 | None:intergenic | 25.0% |
| ! | CCACAACTTATAAATATTCA+TGG | - | chr6_2:3258334-3258353 | Msa0905240:five_prime_UTR | 25.0% |
| AAGTTCATGAAGTGATGTAA+TGG | + | chr6_2:3255693-3255712 | None:intergenic | 30.0% | |
| TTCCATCTCATACAAAATCT+TGG | - | chr6_2:3255943-3255962 | Msa0905240:CDS | 30.0% | |
| TCCATCTCATACAAAATCTT+GGG | - | chr6_2:3255944-3255963 | Msa0905240:CDS | 30.0% | |
| TCTTGGGTTTATTCTCAATA+TGG | - | chr6_2:3255960-3255979 | Msa0905240:CDS | 30.0% | |
| AGCCAAATTTAAGTCATAGA+TGG | + | chr6_2:3256155-3256174 | None:intergenic | 30.0% | |
| !! | GCAACTTTTGAAAAGATAGA+GGG | + | chr6_2:3256193-3256212 | None:intergenic | 30.0% |
| ! | CTCTATCTTTTCAAAAGTTG+CGG | - | chr6_2:3256192-3256211 | Msa0905240:CDS | 30.0% |
| CCAAAGATTCAATACTTATG+GGG | + | chr6_2:3256252-3256271 | None:intergenic | 30.0% | |
| GCCAAAGATTCAATACTTAT+GGG | + | chr6_2:3256253-3256272 | None:intergenic | 30.0% | |
| TGCCAAAGATTCAATACTTA+TGG | + | chr6_2:3256254-3256273 | None:intergenic | 30.0% | |
| ! | TATTGAATCTTTGGCAGTTT+TGG | - | chr6_2:3256258-3256277 | Msa0905240:CDS | 30.0% |
| !!! | TATTGATTCTTTGGCAGTTT+TGG | + | chr6_2:3256359-3256378 | None:intergenic | 30.0% |
| TGCCAAAGAATCAATACTTA+GGG | - | chr6_2:3256363-3256382 | Msa0905240:intron | 30.0% | |
| AGACCAAGTGAAGAAATTTA+AGG | - | chr6_2:3256890-3256909 | Msa0905240:CDS | 30.0% | |
| CAACCTTAAATTTCTTCACT+TGG | + | chr6_2:3256896-3256915 | None:intergenic | 30.0% | |
| ! | CAAGTGAAGAAATTTAAGGT+TGG | - | chr6_2:3256894-3256913 | Msa0905240:CDS | 30.0% |
| !! | GACAAAGTACCAATAGTTTT+TGG | + | chr6_2:3256963-3256982 | None:intergenic | 30.0% |
| GCAATAATTACTGCTTATCA+AGG | - | chr6_2:3257065-3257084 | Msa0905240:CDS | 30.0% | |
| ! | GAAAGAGTTGAATTTTCTTC+TGG | - | chr6_2:3257092-3257111 | Msa0905240:CDS | 30.0% |
| TTCTGGTCAATCTTTAGTTA+AGG | + | chr6_2:3257330-3257349 | None:intergenic | 30.0% | |
| AATTGTTTGGAGAATCTGTT+TGG | + | chr6_2:3257492-3257511 | None:intergenic | 30.0% | |
| TAAGTTAAGGACGAATTGTT+TGG | + | chr6_2:3257505-3257524 | None:intergenic | 30.0% | |
| CTTGGCAATTGATTATACAA+AGG | - | chr6_2:3257708-3257727 | Msa0905240:intron | 30.0% | |
| ACTAACTGAAAAGTTTGATG+TGG | - | chr6_2:3257744-3257763 | Msa0905240:intron | 30.0% | |
| ! | AAAAATAGGTGATAGTGAGA+GGG | - | chr6_2:3257891-3257910 | Msa0905240:CDS | 30.0% |
| AGAGAAATTGAAACCTTACT+TGG | - | chr6_2:3258014-3258033 | Msa0905240:CDS | 30.0% | |
| TTGAAACCTTACTTGGAAAA+TGG | - | chr6_2:3258021-3258040 | Msa0905240:CDS | 30.0% | |
| ATTATTCATGCTCATGGAAT+GGG | + | chr6_2:3258156-3258175 | None:intergenic | 30.0% | |
| GATTAGATTATTCATGCTCA+TGG | + | chr6_2:3258162-3258181 | None:intergenic | 30.0% | |
| GCGTTGAATTTGTACTAATT+TGG | - | chr6_2:3258200-3258219 | Msa0905240:five_prime_UTR | 30.0% | |
| GTAATAAATCTCGAAGAGAT+AGG | - | chr6_2:3258254-3258273 | Msa0905240:five_prime_UTR | 30.0% | |
| AGTGATGTAATGGTATACGA+GGG | + | chr6_2:3255683-3255702 | None:intergenic | 35.0% | |
| AAGTGATGTAATGGTATACG+AGG | + | chr6_2:3255684-3255703 | None:intergenic | 35.0% | |
| AATGCATGAAGATGACTTTG+GGG | + | chr6_2:3255718-3255737 | None:intergenic | 35.0% | |
| CAATGCATGAAGATGACTTT+GGG | + | chr6_2:3255719-3255738 | None:intergenic | 35.0% | |
| ATGATCACTTTGCTACTAAG+AGG | + | chr6_2:3255906-3255925 | None:intergenic | 35.0% | |
| TCTTAGTAGCAAAGTGATCA+TGG | - | chr6_2:3255905-3255924 | Msa0905240:CDS | 35.0% | |
| ! | ACCCAAGATTTTGTATGAGA+TGG | + | chr6_2:3255948-3255967 | None:intergenic | 35.0% |
| AATAGAAACCTTACTGGCAA+AGG | + | chr6_2:3256131-3256150 | None:intergenic | 35.0% | |
| GATGGTAATAGAAACCTTAC+TGG | + | chr6_2:3256137-3256156 | None:intergenic | 35.0% | |
| !! | CGCAACTTTTGAAAAGATAG+AGG | + | chr6_2:3256194-3256213 | None:intergenic | 35.0% |
| !! | CCCCATAAGTATTGAATCTT+TGG | - | chr6_2:3256249-3256268 | Msa0905240:CDS | 35.0% |
| CTGCCAAAGAATCAATACTT+AGG | - | chr6_2:3256362-3256381 | Msa0905240:intron | 35.0% | |
| GCCAAAGAATCAATACTTAG+GGG | - | chr6_2:3256364-3256383 | Msa0905240:intron | 35.0% | |
| CCAAAGAATCAATACTTAGG+GGG | - | chr6_2:3256365-3256384 | Msa0905240:intron | 35.0% | |
| !! | GTTTCATTTTGGTACCTTGT+TGG | + | chr6_2:3256764-3256783 | None:intergenic | 35.0% |
| !!! | TTTTTTCTTCTTCGTTTGCG+TGG | - | chr6_2:3256813-3256832 | Msa0905240:CDS | 35.0% |
| AAGGTTGGAGATGAAGTTTA+TGG | - | chr6_2:3256909-3256928 | Msa0905240:CDS | 35.0% | |
| AAATCTCTACTTGTTCTTGC+AGG | - | chr6_2:3257116-3257135 | Msa0905240:intron | 35.0% | |
| !! | AGTTGGATCTCTTGTTATTC+AGG | - | chr6_2:3257148-3257167 | Msa0905240:intron | 35.0% |
| ! | TAACCAGGTTCTCTTTTCTT+GGG | + | chr6_2:3257249-3257268 | None:intergenic | 35.0% |
| ! | TTAACCAGGTTCTCTTTTCT+TGG | + | chr6_2:3257250-3257269 | None:intergenic | 35.0% |
| AAAGAGAACCTGGTTAAAGT+CGG | - | chr6_2:3257253-3257272 | Msa0905240:intron | 35.0% | |
| !! | TTTTTAGTCCGACTTTAACC+AGG | + | chr6_2:3257264-3257283 | None:intergenic | 35.0% |
| CGGATTTACTACTTATCTTC+TGG | + | chr6_2:3257347-3257366 | None:intergenic | 35.0% | |
| TGGTTGGAACAATCTTTAGT+CGG | + | chr6_2:3257465-3257484 | None:intergenic | 35.0% | |
| ! | CAAAAATAGGTGATAGTGAG+AGG | - | chr6_2:3257890-3257909 | Msa0905240:CDS | 35.0% |
| ! | CATCTGAAGTGAGTAAGAAA+GGG | + | chr6_2:3257984-3258003 | None:intergenic | 35.0% |
| !!! | ACTTTGCCATTTTCCAAGTA+AGG | + | chr6_2:3258030-3258049 | None:intergenic | 35.0% |
| TGGCAAAGTGAAACCAATAT+TGG | - | chr6_2:3258041-3258060 | Msa0905240:exon | 35.0% | |
| AAAATGGAAAGGGACTCTTA+GGG | + | chr6_2:3258068-3258087 | None:intergenic | 35.0% | |
| TTATTCATGCTCATGGAATG+GGG | + | chr6_2:3258155-3258174 | None:intergenic | 35.0% | |
| GATTATTCATGCTCATGGAA+TGG | + | chr6_2:3258157-3258176 | None:intergenic | 35.0% | |
| TATATTGGAGAGCCAAGTTG+AGG | - | chr6_2:3255629-3255648 | Msa0905240:three_prime_UTR | 40.0% | |
| ! | ATATTGGAGAGCCAAGTTGA+GGG | - | chr6_2:3255630-3255649 | Msa0905240:three_prime_UTR | 40.0% |
| GCAATGCATGAAGATGACTT+TGG | + | chr6_2:3255720-3255739 | None:intergenic | 40.0% | |
| TGAGCACTTGATCTTCTCTA+GGG | + | chr6_2:3256034-3256053 | None:intergenic | 40.0% | |
| ATGAGCACTTGATCTTCTCT+AGG | + | chr6_2:3256035-3256054 | None:intergenic | 40.0% | |
| AGAAGATCAAGTGCTCATCA+AGG | - | chr6_2:3256037-3256056 | Msa0905240:CDS | 40.0% | |
| AGAGCCCTCTTAATATCAAC+AGG | + | chr6_2:3256083-3256102 | None:intergenic | 40.0% | |
| GTTGATATTAAGAGGGCTCT+TGG | - | chr6_2:3256083-3256102 | Msa0905240:intron | 40.0% | |
| !!! | AAGGCGACACATGTCATTTT+TGG | - | chr6_2:3256309-3256328 | Msa0905240:CDS | 40.0% |
| !!! | TGGCAGTTTTTTTTTGGCCT+TGG | - | chr6_2:3256329-3256348 | Msa0905240:CDS | 40.0% |
| !!! | GGCAGTTTTTTTTTGGCCTT+GGG | - | chr6_2:3256330-3256349 | Msa0905240:CDS | 40.0% |
| !!! | GCAGTTTTTTTTTGGCCTTG+GGG | - | chr6_2:3256331-3256350 | Msa0905240:CDS | 40.0% |
| !!! | CAGTTTTTTTTTGGCCTTGG+GGG | - | chr6_2:3256332-3256351 | Msa0905240:intron | 40.0% |
| !!! | AGTTTTTTTTTGGCCTTGGG+GGG | - | chr6_2:3256333-3256352 | Msa0905240:intron | 40.0% |
| !! | CCCCCTAAGTATTGATTCTT+TGG | + | chr6_2:3256368-3256387 | None:intergenic | 40.0% |
| ! | ACCGCAACTTTTGCAAAGAT+AGG | - | chr6_2:3256421-3256440 | Msa0905240:intron | 40.0% |
| CCCTATCTTTGCAAAAGTTG+CGG | + | chr6_2:3256425-3256444 | None:intergenic | 40.0% | |
| ! | CCGCAACTTTTGCAAAGATA+GGG | - | chr6_2:3256422-3256441 | Msa0905240:intron | 40.0% |
| ! | CGCAACTTTTGCAAAGATAG+GGG | - | chr6_2:3256423-3256442 | Msa0905240:intron | 40.0% |
| ! | GCAACTTTTGCAAAGATAGG+GGG | - | chr6_2:3256424-3256443 | Msa0905240:intron | 40.0% |
| ! | GATTGGTCGTAGTTTCTTGA+CGG | - | chr6_2:3256729-3256748 | Msa0905240:intron | 40.0% |
| ! | GTTCTCTTTTCTTGGGAACA+AGG | + | chr6_2:3257242-3257261 | None:intergenic | 40.0% |
| !!! | ATTACCAGGGTCACTTTTCT+CGG | + | chr6_2:3257412-3257431 | None:intergenic | 40.0% |
| GTCAAACCTACAGATTACCA+GGG | + | chr6_2:3257425-3257444 | None:intergenic | 40.0% | |
| GTCGGACTTTACTTATCTTC+TGG | + | chr6_2:3257447-3257466 | None:intergenic | 40.0% | |
| !! | GAATCTGTTTGGTTTCTGGT+TGG | + | chr6_2:3257481-3257500 | None:intergenic | 40.0% |
| ! | TGGAGAATCTGTTTGGTTTC+TGG | + | chr6_2:3257485-3257504 | None:intergenic | 40.0% |
| AGATGCCTCAAAAACATGCT+TGG | + | chr6_2:3257629-3257648 | None:intergenic | 40.0% | |
| ! | CACAACTTTTCCTCCTTCAT+TGG | + | chr6_2:3257929-3257948 | None:intergenic | 40.0% |
| GTTGTGACAATATTACCACC+TGG | - | chr6_2:3257943-3257962 | Msa0905240:CDS | 40.0% | |
| ! | CCATCTGAAGTGAGTAAGAA+AGG | + | chr6_2:3257985-3258004 | None:intergenic | 40.0% |
| CCTTTCTTACTCACTTCAGA+TGG | - | chr6_2:3257982-3258001 | Msa0905240:CDS | 40.0% | |
| GAAAATGGAAAGGGACTCTT+AGG | + | chr6_2:3258069-3258088 | None:intergenic | 40.0% | |
| ACAGCCTGAGAAAATGGAAA+GGG | + | chr6_2:3258078-3258097 | None:intergenic | 40.0% | |
| CAGGTAATGTTCCCTCAACT+TGG | + | chr6_2:3255644-3255663 | None:intergenic | 45.0% | |
| ! | CAAGTTGAGGGAACATTACC+TGG | - | chr6_2:3255642-3255661 | Msa0905240:three_prime_UTR | 45.0% |
| !! | ACTTGATCTTCTCTAGGGTG+TGG | + | chr6_2:3256029-3256048 | None:intergenic | 45.0% |
| TTGACTCTCCTTTGCCAGTA+AGG | - | chr6_2:3256120-3256139 | Msa0905240:intron | 45.0% | |
| TGACATGTGTCGCCTTACTT+AGG | + | chr6_2:3256305-3256324 | None:intergenic | 45.0% | |
| TACGGTACACTCGCAAATTG+AGG | + | chr6_2:3256494-3256513 | None:intergenic | 45.0% | |
| ACCGGCAATCTAATGCAATC+AGG | - | chr6_2:3256652-3256671 | Msa0905240:intron | 45.0% | |
| GCCTGATTGCATTAGATTGC+CGG | + | chr6_2:3256656-3256675 | None:intergenic | 45.0% | |
| TTTCTTCTTCGTTTGCGTGG+TGG | - | chr6_2:3256816-3256835 | Msa0905240:CDS | 45.0% | |
| ACACCAGCTACATCATATCC+TGG | + | chr6_2:3256855-3256874 | None:intergenic | 45.0% | |
| AGGATATGATGTAGCTGGTG+TGG | - | chr6_2:3256854-3256873 | Msa0905240:CDS | 45.0% | |
| ATATGATGTAGCTGGTGTGG+TGG | - | chr6_2:3256857-3256876 | Msa0905240:CDS | 45.0% | |
| GTTCCCAAGAAAAGAGAACC+TGG | - | chr6_2:3257243-3257262 | Msa0905240:intron | 45.0% | |
| !!! | TTACCAGGGTCACTTTTCTC+GGG | + | chr6_2:3257411-3257430 | None:intergenic | 45.0% |
| AAGTGACCCTGGTAATCTGT+AGG | - | chr6_2:3257416-3257435 | Msa0905240:intron | 45.0% | |
| GGTCAAACCTACAGATTACC+AGG | + | chr6_2:3257426-3257445 | None:intergenic | 45.0% | |
| !! | GCTAGCCAAGCATGTTTTTG+AGG | - | chr6_2:3257621-3257640 | Msa0905240:intron | 45.0% |
| GATGTGGTGTATGATGCAGT+AGG | - | chr6_2:3257760-3257779 | Msa0905240:intron | 45.0% | |
| AGTAAGAAAGGGATAGCTGG+TGG | + | chr6_2:3257973-3257992 | None:intergenic | 45.0% | |
| GTGAGTAAGAAAGGGATAGC+TGG | + | chr6_2:3257976-3257995 | None:intergenic | 45.0% | |
| GGACTCTTAGGGTCCAATAT+TGG | + | chr6_2:3258057-3258076 | None:intergenic | 45.0% | |
| ! | GAGTCCCTTTCCATTTTCTC+AGG | - | chr6_2:3258071-3258090 | Msa0905240:five_prime_UTR | 45.0% |
| CACAGCCTGAGAAAATGGAA+AGG | + | chr6_2:3258079-3258098 | None:intergenic | 45.0% | |
| ! | CTTTCCATTTTCTCAGGCTG+TGG | - | chr6_2:3258077-3258096 | Msa0905240:five_prime_UTR | 45.0% |
| !! | TTTATATTTAAATTAGTTAA+GGG | + | chr6_2:3256225-3256244 | None:intergenic | 5.0% |
| !!! | TTTTATATTTAAATTAGTTA+AGG | + | chr6_2:3256226-3256245 | None:intergenic | 5.0% |
| !! | TGAAATAAAAAATATTAAAT+AGG | + | chr6_2:3257872-3257891 | None:intergenic | 5.0% |
| !!! | ATATTTTTTATTTCAAAAAT+AGG | - | chr6_2:3257877-3257896 | Msa0905240:CDS | 5.0% |
| GGGAGCAATCTCATTCAACC+AGG | + | chr6_2:3255663-3255682 | None:intergenic | 50.0% | |
| !! | CTTCTCTAGGGTGTGGTGTA+GGG | + | chr6_2:3256022-3256041 | None:intergenic | 50.0% |
| !! | TCTTCTCTAGGGTGTGGTGT+AGG | + | chr6_2:3256023-3256042 | None:intergenic | 50.0% |
| GAGGGCTCTTGGTCATTTCA+AGG | - | chr6_2:3256094-3256113 | Msa0905240:intron | 50.0% | |
| CTGACGTGGCATCCTAAGTA+AGG | - | chr6_2:3256290-3256309 | Msa0905240:CDS | 50.0% | |
| GACGGCGTATAACACCAACA+AGG | - | chr6_2:3256747-3256766 | Msa0905240:intron | 50.0% | |
| GTGCCAGGATATGATGTAGC+TGG | - | chr6_2:3256849-3256868 | Msa0905240:CDS | 50.0% | |
| CTACTTGTTCTTGCAGGTGC+TGG | - | chr6_2:3257122-3257141 | Msa0905240:intron | 50.0% | |
| TTTCCCGAGAAAAGTGACCC+TGG | - | chr6_2:3257405-3257424 | Msa0905240:intron | 50.0% | |
| GAGGAAATTGGGAGCAGACT+TGG | - | chr6_2:3257690-3257709 | Msa0905240:intron | 50.0% | |
| ! | TGATAGTGAGAGGGCAGTGA+AGG | - | chr6_2:3257900-3257919 | Msa0905240:CDS | 50.0% |
| GCTTCCACAGCCTGAGAAAA+TGG | + | chr6_2:3258084-3258103 | None:intergenic | 50.0% | |
| GGGTGTGGTGTAGGGACATT+AGG | + | chr6_2:3256014-3256033 | None:intergenic | 55.0% | |
| !! | TTTGGCAGTTTTGGCCCCCA+AGG | - | chr6_2:3256267-3256286 | Msa0905240:CDS | 55.0% |
| TAGGATGCCACGTCAGCCTT+GGG | + | chr6_2:3256286-3256305 | None:intergenic | 55.0% | |
| TTAGGATGCCACGTCAGCCT+TGG | + | chr6_2:3256287-3256306 | None:intergenic | 55.0% | |
| GCTGGTGTGGTGGTTAGTGT+TGG | - | chr6_2:3256867-3256886 | Msa0905240:CDS | 55.0% | |
| !! | CTTGTTCTTGCAGGTGCTGG+AGG | - | chr6_2:3257125-3257144 | Msa0905240:intron | 55.0% |
| GCAGTGAAGGCTGCCAATGA+AGG | - | chr6_2:3257913-3257932 | Msa0905240:CDS | 55.0% | |
| GTGAAGGCTGCCAATGAAGG+AGG | - | chr6_2:3257916-3257935 | Msa0905240:CDS | 55.0% | |
| ATAGCTGGTGGAGTTCCAGG+TGG | + | chr6_2:3257961-3257980 | None:intergenic | 55.0% | |
| AGGATGCCACGTCAGCCTTG+GGG | + | chr6_2:3256285-3256304 | None:intergenic | 60.0% | |
| !! | TTGGCAGTTTTGGCCCCCCA+AGG | + | chr6_2:3256349-3256368 | None:intergenic | 60.0% |
| GGTGGTGTGAAGACTGTGCC+AGG | - | chr6_2:3256834-3256853 | Msa0905240:CDS | 60.0% | |
| !! | CTTGCAGGTGCTGGAGGAGT+TGG | - | chr6_2:3257131-3257150 | Msa0905240:intron | 60.0% |
| GGGATAGCTGGTGGAGTTCC+AGG | + | chr6_2:3257964-3257983 | None:intergenic | 60.0% | |
| TTTGGCCCCCAAGGCTGACG+TGG | - | chr6_2:3256276-3256295 | Msa0905240:CDS | 65.0% | |
| GGATGCCACGTCAGCCTTGG+GGG | + | chr6_2:3256284-3256303 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_2 | gene | 3255556 | 3258416 | 3255556 | ID=Msa0905240;Name=Msa0905240 |
| chr6_2 | mRNA | 3255556 | 3258416 | 3255556 | ID=Msa0905240-mRNA-1;Parent=Msa0905240;Name=Msa0905240-mRNA-1;_AED=0.04;_eAED=0.04;_QI=368|1|1|1|1|1|4|252|320 |
| chr6_2 | exon | 3255556 | 3256073 | 3255556 | ID=Msa0905240-mRNA-1:exon:1010;Parent=Msa0905240-mRNA-1 |
| chr6_2 | exon | 3256191 | 3256350 | 3256191 | ID=Msa0905240-mRNA-1:exon:1009;Parent=Msa0905240-mRNA-1 |
| chr6_2 | exon | 3256803 | 3257126 | 3256803 | ID=Msa0905240-mRNA-1:exon:1008;Parent=Msa0905240-mRNA-1 |
| chr6_2 | exon | 3257836 | 3258416 | 3257836 | ID=Msa0905240-mRNA-1:exon:1007;Parent=Msa0905240-mRNA-1 |
| chr6_2 | five_prime_UTR | 3258049 | 3258416 | 3258049 | ID=Msa0905240-mRNA-1:five_prime_utr;Parent=Msa0905240-mRNA-1 |
| chr6_2 | CDS | 3257836 | 3258048 | 3257836 | ID=Msa0905240-mRNA-1:cds;Parent=Msa0905240-mRNA-1 |
| chr6_2 | CDS | 3256803 | 3257126 | 3256803 | ID=Msa0905240-mRNA-1:cds;Parent=Msa0905240-mRNA-1 |
| chr6_2 | CDS | 3256191 | 3256350 | 3256191 | ID=Msa0905240-mRNA-1:cds;Parent=Msa0905240-mRNA-1 |
| chr6_2 | CDS | 3255808 | 3256073 | 3255808 | ID=Msa0905240-mRNA-1:cds;Parent=Msa0905240-mRNA-1 |
| chr6_2 | three_prime_UTR | 3255556 | 3255807 | 3255556 | ID=Msa0905240-mRNA-1:three_prime_utr;Parent=Msa0905240-mRNA-1 |
| Gene Sequence |
| Protein sequence |
