AlfalfaGEDB | Msa0265960

M. sativa cultivar zhongmu-4 / Msa0265960

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0265960	XP_003597463.2	94.248	452	26	0	1	452	1	452	0.0	836

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0265960	G7IUE9	94.248	452	26	0	1	452	1	452	0.0	836

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0159590	Msa0265960	0.803392	3.564147e-49	-8.615850e-47
Msa0265960	Msa0302830	0.862516	4.794294e-64	-8.615850e-47
Msa0265960	Msa0563740	0.816534	5.262067e-52	-8.615850e-47
Msa0265960	Msa0590200	0.805776	1.133775e-49	-8.615850e-47
Msa0265960	Msa0606100	0.807851	4.129928e-50	-8.615850e-47
Msa0265960	Msa0668900	0.808129	3.603446e-50	-8.615850e-47
Msa0265960	Msa0747740	0.811271	7.611054e-51	-8.615850e-47
Msa0265960	Msa0828190	0.821353	4.224922e-53	-8.615850e-47
Msa0265960	Msa0888790	0.813607	2.349131e-51	-8.615850e-47
Msa0265960	Msa0924430	0.804568	2.029711e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0265960	MtrunA17_Chr2g0329061	94.248	452	26	0	1	452	1	452	0.0	836

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0265960	AT5G12930.1	48.601	393	176	11	1	384	1	376	3.28e-109	330

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Find 120 sgRNAs with CRISPR-Local

Find 260 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACAATTGTCACCTCGTA+AGG	0.497486	2_2:+66379437	Msa0265960:CDS
AAAATGAAGTCTCACTGGTT+TGG	0.399324	2_2:-66379979	None:intergenic
AAAGAAGGATTTGGTTGTTC+TGG	0.252617	2_2:+66378720	Msa0265960:CDS
AAATTATAGATAGTAGCAGC+AGG	0.520555	2_2:+66379800	Msa0265960:three_prime_UTR
AACAATTTCAAAACTAAAGA+AGG	0.414561	2_2:+66378705	Msa0265960:CDS
AAGAAGTTATCCACCAAGGA+CGG	0.607937	2_2:+66377480	Msa0265960:CDS
AAGAGCCTCCAGTGGAAATG+AGG	0.559249	2_2:+66377925	Msa0265960:CDS
AAGATGTTTATAATCTTAAG+AGG	0.402964	2_2:+66378472	Msa0265960:CDS
AATGAGCAGAGGTTCATTAG+AGG	0.421638	2_2:-66380033	None:intergenic
AATGAGTAATTAGTCTATGA+AGG	0.508399	2_2:-66379914	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ACAATAAGAAACCGATGAAT+AGG	-	chr2_2:66375773-66375792	None:intergenic	30.0%
GCAAAATGTTCGTAAATTAG+TGG	+	chr2_2:66376087-66376106	Msa0265960:intron	30.0%
TGTAGTGTTTGGCAAAATTA+GGG	-	chr2_2:66376425-66376444	None:intergenic	30.0%
TTGTAGTGTTTGGCAAAATT+AGG	-	chr2_2:66376426-66376445	None:intergenic	30.0%
CTGATTGAATTTGTAGTGTT+TGG	-	chr2_2:66376436-66376455	None:intergenic	30.0%
TCAAATAGTAGCTTGAGTTA+AGG	-	chr2_2:66376613-66376632	None:intergenic	30.0%
ACTATGACAACAACATTTCT+TGG	-	chr2_2:66376661-66376680	None:intergenic	30.0%
ACTTATAGCATCCTCTAAAT+CGG	-	chr2_2:66376916-66376935	None:intergenic	30.0%
TTCTGCACAGTTATAAATTG+CGG	-	chr2_2:66377099-66377118	None:intergenic	30.0%
CTCATATACTTACTGTATTG+GGG	+	chr2_2:66377614-66377633	Msa0265960:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_2	gene	66375367	66380056	66375367	ID=Msa0265960;Name=Msa0265960
chr2_2	mRNA	66375367	66380056	66375367	ID=Msa0265960-mRNA-1;Parent=Msa0265960;Name=Msa0265960-mRNA-1;_AED=0.01;_eAED=0.01;_QI=148\|1\|1\|1\|0.83\|0.85\|7\|439\|452
chr2_2	exon	66375367	66375871	66375367	ID=Msa0265960-mRNA-1:exon:21017;Parent=Msa0265960-mRNA-1
chr2_2	exon	66377393	66377605	66377393	ID=Msa0265960-mRNA-1:exon:21018;Parent=Msa0265960-mRNA-1
chr2_2	exon	66377911	66378051	66377911	ID=Msa0265960-mRNA-1:exon:21019;Parent=Msa0265960-mRNA-1
chr2_2	exon	66378450	66378569	66378450	ID=Msa0265960-mRNA-1:exon:21020;Parent=Msa0265960-mRNA-1
chr2_2	exon	66378664	66378750	66378664	ID=Msa0265960-mRNA-1:exon:21021;Parent=Msa0265960-mRNA-1
chr2_2	exon	66379090	66379536	66379090	ID=Msa0265960-mRNA-1:exon:21022;Parent=Msa0265960-mRNA-1
chr2_2	exon	66379624	66380056	66379624	ID=Msa0265960-mRNA-1:exon:21023;Parent=Msa0265960-mRNA-1
chr2_2	five_prime_UTR	66375367	66375514	66375367	ID=Msa0265960-mRNA-1:five_prime_utr;Parent=Msa0265960-mRNA-1
chr2_2	CDS	66375515	66375871	66375515	ID=Msa0265960-mRNA-1:cds;Parent=Msa0265960-mRNA-1
chr2_2	CDS	66377393	66377605	66377393	ID=Msa0265960-mRNA-1:cds;Parent=Msa0265960-mRNA-1
chr2_2	CDS	66377911	66378051	66377911	ID=Msa0265960-mRNA-1:cds;Parent=Msa0265960-mRNA-1
chr2_2	CDS	66378450	66378569	66378450	ID=Msa0265960-mRNA-1:cds;Parent=Msa0265960-mRNA-1
chr2_2	CDS	66378664	66378750	66378664	ID=Msa0265960-mRNA-1:cds;Parent=Msa0265960-mRNA-1
chr2_2	CDS	66379090	66379530	66379090	ID=Msa0265960-mRNA-1:cds;Parent=Msa0265960-mRNA-1
chr2_2	three_prime_UTR	66379531	66379536	66379531	ID=Msa0265960-mRNA-1:three_prime_utr;Parent=Msa0265960-mRNA-1
chr2_2	three_prime_UTR	66379624	66380056	66379624	ID=Msa0265960-mRNA-1:three_prime_utr;Parent=Msa0265960-mRNA-1

Gene Sequence

>Msa0265960

ATGAACAACTCTAACGGCAACCCTAACGCTACTTCACCATTACCATGTCTCGTTTCAATTCCACCAATCACTCTCTCCGGCCGTCGTCGTCTCTCCGCCGCAACCGTCGAGCCGCGGCGTCCGATCTCATTTTCGAAGCCAATGGCCTGGATTAACCTTCAAGGACGGGTTGTTAACGCTGATGAAGCTAGCGCGGCTAGAACTGTTGGTGGTGGATTGAGTGATGAACTTGCATTTGCTTGGGATCTTTTTCCGCCTATTCATCGGTTTCTTATTGTTGCTGTTATTGGTGTTGCTGCTGCTCAGTCCAAAAAGGATCGAGAGATTTTCAATCTTAAGAAATCCGTTGAGCTTAGGGATCAGCTGTTATCAAGCATGCAGGAGAAGCTTGACAATCTTTGTGAGCAGTTTAACAATTCTAAAGAGAACACAGTTGCTGCTATCAAGAAGTTATCCACCAAGGACGGAGAATTGCAATTAGATGAAACATTTGGCTCTGAGCGAATTAAGTTTGTTGATTGCGGTTGTTGGCATTGTGATGAACACTCTTCCTTCTGTAATGAATATATGGGTGCCTTGAGTAGAAGAGCCTCCAGTGGAAATGAGGTCCTCCAATATAAGTCACCCTTCTCTAATGAAGACCAAGAGGAGAGAAGAATGTCTGGCTTGTCGGATTTGGCTTCAAGTGTCACATCTGCTGCTGATATCCAGTTTAACAACTTGGCTGTAGAACAAGATGTTTATAATCTTAAGAGGGACTGTGATGAGAAGGAGACCACAATAAAAGAGCTGACCAATCTGCTAAACTCTTCTGAGGTTGCTAATAGCAAGAGAGTTTCTGAATTAGAAGACATTATACGGAGGAAGAATACAACAATTTCAAAACTAAAGAAGGATTTGGTTGTTCTGGAACAAAAGGTTATGCAGCTTTCAAGGCTTCGTCGACCATCCTTCTCTGCAAGTATTCCAAATGAAATTCAGCTGCCACAAATGAGAGATAACCTCATTTATGATATGGACAGCACCACTAGCCCCTCATCTTCTGATTCTGATAGTTCTCCTGTCAACAATGCACAAGATCTTCCTGTTGATGTCATTCTACCAACCAAGAATTCTGAATCTACAATTGATCAGATATCTACGCCAGCAAAAATCTTAAATTCGTCAGGGAGACTCATTGAACGCCGCTCGAAATTTCAATCCGCTAGTCCTCTTAAAGAAATTCCTTCTTATCAGAAATCTAATGCAGCTTCTTCTTCGAGCCAAAAACAATTGTCACCTCGTAAGGACTTAAAAAAGAGTAGAAGACGATCTCTCAATGGAACTAAGAGTGCGAGTGCAAATAAGAGATGGGTTTAG

Protein sequence

>Msa0265960

MNNSNGNPNATSPLPCLVSIPPITLSGRRRLSAATVEPRRPISFSKPMAWINLQGRVVNADEASAARTVGGGLSDELAFAWDLFPPIHRFLIVAVIGVAAAQSKKDREIFNLKKSVELRDQLLSSMQEKLDNLCEQFNNSKENTVAAIKKLSTKDGELQLDETFGSERIKFVDCGCWHCDEHSSFCNEYMGALSRRASSGNEVLQYKSPFSNEDQEERRMSGLSDLASSVTSAADIQFNNLAVEQDVYNLKRDCDEKETTIKELTNLLNSSEVANSKRVSELEDIIRRKNTTISKLKKDLVVLEQKVMQLSRLRRPSFSASIPNEIQLPQMRDNLIYDMDSTTSPSSSDSDSSPVNNAQDLPVDVILPTKNSESTIDQISTPAKILNSSGRLIERRSKFQSASPLKEIPSYQKSNAASSSSQKQLSPRKDLKKSRRRSLNGTKSASANKRWV*