AlfalfaGEDB | Msa0924430

M. sativa cultivar zhongmu-4 / Msa0924430

KEGG: K11498
GO: GO:0000226 GO:0000278 GO:0000280 GO:0000281 GO:0000775 GO:0000910 GO:0000911 GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005694 GO:0005737 GO:0005856 GO:0005871 GO:0005875 GO:0006928 GO:0006996 GO:0007010 GO:0007017 GO:0007018 GO:0007049 GO:0007051 GO:0007052 GO:0007275 GO:0007349 GO:0008150 GO:0009524 GO:0009553 GO:0009555 GO:0009558 GO:0009561 GO:0009653 GO:0009987 GO:0015630 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022402 GO:0022607 GO:0032501 GO:0032502 GO:0032506 GO:0032991 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043515 GO:0044085 GO:0044422 GO:0044424 GO:0044427 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0044877 GO:0048229 GO:0048285 GO:0048646 GO:0048856 GO:0051225 GO:0051301 GO:0061640 GO:0070925 GO:0071840 GO:0090307 GO:0098687 GO:0140014 GO:1902410 GO:1902850 GO:1903047
PFAM: PF00225.26

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0924430	XP_003620405.2	98.859	964	11	0	1	964	1	964	0.0	1983

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0924430	sp\|Q8S950\|KN7A_TOBAC	78.454	970	192	10	1	964	1	959	0.0	1547

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0005020	Msa0924430	0.802791	4.743279e-49	-8.615850e-47
Msa0015570	Msa0924430	0.836775	7.681035e-57	-8.615850e-47
Msa0016040	Msa0924430	0.839898	1.203052e-57	-8.615850e-47
Msa0016530	Msa0924430	0.837487	5.049554e-57	-8.615850e-47
Msa0018920	Msa0924430	0.827218	1.766831e-54	-8.615850e-47
Msa0019930	Msa0924430	0.814366	1.597884e-51	-8.615850e-47
Msa0020540	Msa0924430	0.868639	5.622672e-66	-8.615850e-47
Msa0025160	Msa0924430	0.812488	4.135069e-51	-8.615850e-47
Msa0027280	Msa0924430	0.816404	5.626965e-52	-8.615850e-47
Msa0027800	Msa0924430	0.810968	8.854396e-51	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0924430	MtrunA17_Chr6g0483701	98.859	964	11	0	1	964	1	964	0.0	1983
Msa0924430	MtrunA17_Chr4g0070001	56.276	972	367	22	3	964	114	1037	0.0	1006
Msa0924430	MtrunA17_Chr8g0372171	57.656	418	161	6	23	426	12	427	1.20e-148	467
Msa0924430	MtrunA17_Chr8g0372171	54.839	62	28	0	770	831	959	1020	5.31e-17	86.7
Msa0924430	MtrunA17_Chr5g0405181	57.869	413	154	6	28	425	18	425	8.09e-147	460
Msa0924430	MtrunA17_Chr5g0405181	46.369	179	90	2	771	949	769	941	1.99e-41	164
Msa0924430	MtrunA17_Chr4g0036001	57.757	419	164	5	23	431	17	432	1.04e-146	457
Msa0924430	MtrunA17_Chr4g0036001	40.343	233	130	4	711	943	633	856	9.17e-45	174
Msa0924430	MtrunA17_Chr3g0142261	57.252	393	161	5	26	413	15	405	7.12e-132	433
Msa0924430	MtrunA17_Chr3g0142261	41.463	164	91	3	780	943	1344	1502	6.81e-33	138

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0924430	AT1G18370.1	75.204	980	221	12	1	964	1	974	0.0	1491
Msa0924430	AT3G43210.3	58.811	976	343	21	6	964	5	938	0.0	1047
Msa0924430	AT3G43210.5	58.811	976	343	21	6	964	5	938	0.0	1047
Msa0924430	AT3G43210.2	58.811	976	343	21	6	964	5	938	0.0	1047
Msa0924430	AT3G43210.4	58.811	976	343	21	6	964	5	938	0.0	1047
Msa0924430	AT3G43210.1	58.811	976	343	21	6	964	5	938	0.0	1047
Msa0924430	AT5G66310.2	56.501	423	168	5	23	431	11	431	4.11e-153	480
Msa0924430	AT5G66310.2	42.690	171	89	2	774	944	881	1042	3.21e-36	149
Msa0924430	AT5G66310.3	56.501	423	168	5	23	431	11	431	4.11e-153	480
Msa0924430	AT5G66310.3	42.690	171	89	2	774	944	881	1042	3.21e-36	149

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Find 228 sgRNAs with CRISPR-Local

Find 361 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACATTATCATCATTCTCA+GGG	0.505521	6_2:-66313092	None:intergenic
AAACTGTGTCCTGTGAATAA+TGG	0.378015	6_2:-66313620	None:intergenic
AAACTTACATTAATCAATTG+AGG	0.465308	6_2:-66308873	None:intergenic
AAAGCAGTTACTTGTTTGTC+AGG	0.410158	6_2:+66313341	Msa0924430:CDS
AAAGCTTCAAGAAGACCAGC+AGG	0.531446	6_2:+66312311	Msa0924430:CDS
AAAGGAAGTAGCGAGGCTGG+AGG	0.683433	6_2:+66312082	Msa0924430:CDS
AAAGGATTGGAAAATTCAAC+AGG	0.468145	6_2:+66312136	Msa0924430:CDS
AAAGTTACAATCAGAAATAA+GGG	0.416723	6_2:+66312699	Msa0924430:CDS
AAATAATGCTCAAGTTAACA+TGG	0.612371	6_2:+66311938	Msa0924430:CDS
AACAACACCTAGCAGAACTT+GGG	0.601898	6_2:+66313716	Msa0924430:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TGAAATTAGGGTTTCGATTT+GGG	-	chr6_2:66308778-66308797	None:intergenic	30.0%
TCAGAAATTGAGGAAGTAAT+TGG	-	chr6_2:66308845-66308864	None:intergenic	30.0%
GGAATTCAATTCAGAAATTG+AGG	-	chr6_2:66308855-66308874	None:intergenic	30.0%
GACCAAAATTTATGTCACAT+TGG	+	chr6_2:66309393-66309412	Msa0924430:intron	30.0%
TTATACATGAACTCAAGTGT+TGG	+	chr6_2:66309428-66309447	Msa0924430:intron	30.0%
AATTGTTCCCTTCTGTTTAA+AGG	-	chr6_2:66309934-66309953	None:intergenic	30.0%
TTTAAACAGAAGGGAACAAT+TGG	+	chr6_2:66309933-66309952	Msa0924430:CDS	30.0%
CAAATATACTTAAAATGCCC+AGG	-	chr6_2:66310116-66310135	None:intergenic	30.0%
AGTTTGACCATAAGCAAAAA+CGG	-	chr6_2:66310362-66310381	None:intergenic	30.0%
TGGAAAGACATATACTATGA+GGG	+	chr6_2:66310387-66310406	Msa0924430:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6_2	gene	66308726	66314519	66308726	ID=Msa0924430;Name=Msa0924430
chr6_2	mRNA	66308726	66314519	66308726	ID=Msa0924430-mRNA-1;Parent=Msa0924430;Name=Msa0924430-mRNA-1;_AED=0.09;_eAED=0.09;_QI=165\|1\|1\|1\|0.92\|0.86\|15\|238\|964
chr6_2	exon	66308726	66308887	66308726	ID=Msa0924430-mRNA-1:exon:10491;Parent=Msa0924430-mRNA-1
chr6_2	exon	66309814	66310054	66309814	ID=Msa0924430-mRNA-1:exon:10492;Parent=Msa0924430-mRNA-1
chr6_2	exon	66310160	66310249	66310160	ID=Msa0924430-mRNA-1:exon:10493;Parent=Msa0924430-mRNA-1
chr6_2	exon	66310356	66310456	66310356	ID=Msa0924430-mRNA-1:exon:10494;Parent=Msa0924430-mRNA-1
chr6_2	exon	66310647	66310763	66310647	ID=Msa0924430-mRNA-1:exon:10495;Parent=Msa0924430-mRNA-1
chr6_2	exon	66311065	66311146	66311065	ID=Msa0924430-mRNA-1:exon:10496;Parent=Msa0924430-mRNA-1
chr6_2	exon	66311233	66311300	66311233	ID=Msa0924430-mRNA-1:exon:10497;Parent=Msa0924430-mRNA-1
chr6_2	exon	66311397	66311456	66311397	ID=Msa0924430-mRNA-1:exon:10498;Parent=Msa0924430-mRNA-1
chr6_2	exon	66311548	66311672	66311548	ID=Msa0924430-mRNA-1:exon:10499;Parent=Msa0924430-mRNA-1
chr6_2	exon	66311761	66311959	66311761	ID=Msa0924430-mRNA-1:exon:10500;Parent=Msa0924430-mRNA-1
chr6_2	exon	66312047	66312157	66312047	ID=Msa0924430-mRNA-1:exon:10501;Parent=Msa0924430-mRNA-1
chr6_2	exon	66312240	66312332	66312240	ID=Msa0924430-mRNA-1:exon:10502;Parent=Msa0924430-mRNA-1
chr6_2	exon	66312409	66313362	66312409	ID=Msa0924430-mRNA-1:exon:10503;Parent=Msa0924430-mRNA-1
chr6_2	exon	66313469	66313797	66313469	ID=Msa0924430-mRNA-1:exon:10504;Parent=Msa0924430-mRNA-1
chr6_2	exon	66313954	66314519	66313954	ID=Msa0924430-mRNA-1:exon:10505;Parent=Msa0924430-mRNA-1
chr6_2	five_prime_UTR	66308726	66308887	66308726	ID=Msa0924430-mRNA-1:five_prime_utr;Parent=Msa0924430-mRNA-1
chr6_2	five_prime_UTR	66309814	66309816	66309814	ID=Msa0924430-mRNA-1:five_prime_utr;Parent=Msa0924430-mRNA-1
chr6_2	CDS	66309817	66310054	66309817	ID=Msa0924430-mRNA-1:cds;Parent=Msa0924430-mRNA-1
chr6_2	CDS	66310160	66310249	66310160	ID=Msa0924430-mRNA-1:cds;Parent=Msa0924430-mRNA-1
chr6_2	CDS	66310356	66310456	66310356	ID=Msa0924430-mRNA-1:cds;Parent=Msa0924430-mRNA-1
chr6_2	CDS	66310647	66310763	66310647	ID=Msa0924430-mRNA-1:cds;Parent=Msa0924430-mRNA-1
chr6_2	CDS	66311065	66311146	66311065	ID=Msa0924430-mRNA-1:cds;Parent=Msa0924430-mRNA-1
chr6_2	CDS	66311233	66311300	66311233	ID=Msa0924430-mRNA-1:cds;Parent=Msa0924430-mRNA-1
chr6_2	CDS	66311397	66311456	66311397	ID=Msa0924430-mRNA-1:cds;Parent=Msa0924430-mRNA-1
chr6_2	CDS	66311548	66311672	66311548	ID=Msa0924430-mRNA-1:cds;Parent=Msa0924430-mRNA-1
chr6_2	CDS	66311761	66311959	66311761	ID=Msa0924430-mRNA-1:cds;Parent=Msa0924430-mRNA-1
chr6_2	CDS	66312047	66312157	66312047	ID=Msa0924430-mRNA-1:cds;Parent=Msa0924430-mRNA-1
chr6_2	CDS	66312240	66312332	66312240	ID=Msa0924430-mRNA-1:cds;Parent=Msa0924430-mRNA-1
chr6_2	CDS	66312409	66313362	66312409	ID=Msa0924430-mRNA-1:cds;Parent=Msa0924430-mRNA-1
chr6_2	CDS	66313469	66313797	66313469	ID=Msa0924430-mRNA-1:cds;Parent=Msa0924430-mRNA-1
chr6_2	CDS	66313954	66314281	66313954	ID=Msa0924430-mRNA-1:cds;Parent=Msa0924430-mRNA-1
chr6_2	three_prime_UTR	66314282	66314519	66314282	ID=Msa0924430-mRNA-1:three_prime_utr;Parent=Msa0924430-mRNA-1

Gene Sequence

>Msa0924430

ATGACTGTGAAAACACCTGGAACACCAGCTTCAAAGATAGACCGAACACCAGTATCGACACCAGGAGGGCCAAGAGCTAGGGAGGATAAAATTGTGGTTACAGTAAGGTTAAGGCCTTTAAACAGAAGGGAACAATTGGCTAAAGATCAGGTGGCATGGGATTGCATTGATGATTATACCATTGTGTATAAACCGCCGCCACATGAACGCATTACTCAACCAGCATCATTTACTTTCGACAAAGTTTTTGGTCCTGCTTCTATAACCGATGCAGTATACGAAGAAGGAGTAAAGAATGTCGCGTTATCTGCACTGATGGGGATCAATGCAACCGTTTTTGCTTATGGTCAAACTAGTAGTGGAAAGACATATACTATGAGGGGAATCACAGAGAAGGCTGTTAATGATATTTATAATCATATAATGAATAATCCTGAAAGAAATTTCACTATAAAAATATCTGGACTAGAAATATACAATGAGAACGTGAAGGACTTGTTAAATTCAGAACCTGGTAAAAGTTTGAAGCTTCTAGATGATCCTGAGAAAGGTACTGTGGTTGAGAAATTAGTGGAAGAAACAGCAAGGGATGACCAACACTTGAGACATTTGATCTCCATTTGTGAAGCTCAAAGACAGGTGGGCGAAACTGCTCTGAACGATACCAGCTCGAGGTCTCACCAGATAATTAGACTGACAATTCAAAGTACTCTTCGTGAAACAGCAGACTGTGTGAAATCTTTTGTTGCTACTCTGAACTTTGTTGATCTGGCTGGAAGTGAGAGGGCTGCGCAGACACATGCAGATGGCACTAGGCTCAAAGAAGGCTGCCATATTAACCTTAGTTTGATGACTCTTACAACTGTTATCAGGAAGCTCAGTATTGGAAAAAGAAGCGGTCATATACCTTATAGAGATTCAAAGCTCACGCGTATATTGCAACATTCCCTTGGTGGCAATGCACGCACTGCCATCATATGTACTTTAAGTCCAGCACTAAGCCATGTAGAGCAATCACGAAACACTCTCTACTTTGCTACCCGAGCAAAGGAGGTTACAAATAATGCTCAAGTTAACATGGTCGTACCAGAAAAGCAGCTTGTTAAGCATTTGCAAAAGGAAGTAGCGAGGCTGGAGGCAGCGCTGCACACTCCTGATCCATCTAAAGAAAAGGATTGGAAAATTCAACAGATGGAAATGGAAATTGAAGAGCTGAGACGTCAGAGAGACCAAGCACAAACTCAAGTGGATGAGTTGCGAAGAAAGCTTCAAGAAGACCAGCAGGTCTCAAAGCCACTTGAGCCATCACATCCTTCGGTCAAGAAGTGCCTATCTTTCACTGGTGCACTATCATCACCAAAGCCAGGGCTAGGGTGTGAGAGAGTAAGAAACACATCATTAAGACAGTCCATGAGGCAATCATCTACTGCTCCTTTTGCCCTTATGCATGAAATCCGCAAACTTGAGCACCTCCAGGAGCAGCTAGGTGAAGAAGCTAACCGAGCTTTGGAAGTACTACAAAAAGAAGTGGCATGTCATAGACTTGGGAACCAAGACGCAGCTGAGACAATTGCAAAGTTACAATCAGAAATAAGGGAAATGCGTTCGGTTAAACCAATACCTAAGGAAGTTGTAGTTGGAGGCATGGTTTCTGTCCACAAGAGTGTTAGTGCTAATCTGAAGGAAGAAATTACCCGACTTCATTCACAAGGAAGCACCATTGCGAATCTTGAGCAGCAGCTTGAGAATGTGCAAAGGTCTATCGACAAGTTGGTGATGTCTCTTCCGAACAATTTTCAAACTCTAACCAGTGAAGCATCCCCCAAGAATAAAAAGGAACATAAAAGGAAAAAGTTGCTTCCTTTGTGTTCAAGTAACTCTACAAATCGCCCCAACTTTATCAGATCTCCCTGCTCACCATTATCTACTACTCAACAAGTTATGGAATCTGATATTGAAAATAAAGCCCCTGAGAATGATGATAATGTTTCAACAGAAATTCATCCTGAGTCTGAGAAGAATACTCCCACAAAGAGTGAAGAAGCTGGTGACGTTACATCAAAGGAAAATACTCCAAGTCCAGGTTACCGCCGCTCTAGTTCAGTTAACATGAAGAAAATGCAGAAAATGTTTCAGAATGCAGCAGAGGAGAATGTAAGAAGTATAAGAGCATATGTAACAGAATTGAAAGAACGTGTGGCCAAGCTGCAGTACCAAAAGCAGTTACTTGTTTGTCAGGTACTTGAACTTGAAGCAAATGAAGCAAGTGGCCAAAACATCGAAGAGGAAGTGTATACAGGTGAACCGGAGGAACCTCAAGTCTCTTGGCAAGTAACATTTAAAGAGATGCAGCATCAGATCCTTGAATTATGGGATGTATGTTATGTCTCCATTATTCACAGGACACAGTTTTATTTACTATTCAAGGGAGATCCAGCTGATCAAATATATATGGAAGTTGAACTAAGGCGTTTGACATGGTTGCAACAACACCTAGCAGAACTTGGGAATGCAAGTCCAGCTCCTGCTGTTGGAGGAGATGAACTAACTATCTCATTGTCATCAAGTATGAGAGCATTGAAAAGGGAAAGAGAATTTCTCGCTAAGAGATTGATATCGCGTTTGACGCCAGAAGAGAGGGAGATATTATACATGAAATGGGATGTCCCCCTTGATGGGAAGCAGAGGAAGATGCAATTTGTCAGCAAGCTTTGGACAGATCCTTTTGATCAAAGGCATGTACAGGAAAGTGCTGAAATAGTTGCAAAGCTGGTGGGTTTTTGCACAGGAGGTAACATGTCAAAGGAGATGTTTGAGCTGAATTTCGTGCTTCCATCTGATAAGAGGCCATGGCTAATGGGCTGGAATCATTTGACAAACTTGCTTAATTTATGA

Protein sequence

>Msa0924430

MTVKTPGTPASKIDRTPVSTPGGPRAREDKIVVTVRLRPLNRREQLAKDQVAWDCIDDYTIVYKPPPHERITQPASFTFDKVFGPASITDAVYEEGVKNVALSALMGINATVFAYGQTSSGKTYTMRGITEKAVNDIYNHIMNNPERNFTIKISGLEIYNENVKDLLNSEPGKSLKLLDDPEKGTVVEKLVEETARDDQHLRHLISICEAQRQVGETALNDTSSRSHQIIRLTIQSTLRETADCVKSFVATLNFVDLAGSERAAQTHADGTRLKEGCHINLSLMTLTTVIRKLSIGKRSGHIPYRDSKLTRILQHSLGGNARTAIICTLSPALSHVEQSRNTLYFATRAKEVTNNAQVNMVVPEKQLVKHLQKEVARLEAALHTPDPSKEKDWKIQQMEMEIEELRRQRDQAQTQVDELRRKLQEDQQVSKPLEPSHPSVKKCLSFTGALSSPKPGLGCERVRNTSLRQSMRQSSTAPFALMHEIRKLEHLQEQLGEEANRALEVLQKEVACHRLGNQDAAETIAKLQSEIREMRSVKPIPKEVVVGGMVSVHKSVSANLKEEITRLHSQGSTIANLEQQLENVQRSIDKLVMSLPNNFQTLTSEASPKNKKEHKRKKLLPLCSSNSTNRPNFIRSPCSPLSTTQQVMESDIENKAPENDDNVSTEIHPESEKNTPTKSEEAGDVTSKENTPSPGYRRSSSVNMKKMQKMFQNAAEENVRSIRAYVTELKERVAKLQYQKQLLVCQVLELEANEASGQNIEEEVYTGEPEEPQVSWQVTFKEMQHQILELWDVCYVSIIHRTQFYLLFKGDPADQIYMEVELRRLTWLQQHLAELGNASPAPAVGGDELTISLSSSMRALKREREFLAKRLISRLTPEEREILYMKWDVPLDGKQRKMQFVSKLWTDPFDQRHVQESAEIVAKLVGFCTGGNMSKEMFELNFVLPSDKRPWLMGWNHLTNLLNL*