Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1453280 | G7IUE9 | 94.469 | 452 | 25 | 0 | 1 | 452 | 1 | 452 | 0.0 | 840 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0035140 | Msa1453280 | 0.806159 | 9.419741e-50 | -8.615850e-47 |
| Msa0056180 | Msa1453280 | 0.812146 | 4.909480e-51 | -8.615850e-47 |
| Msa0067060 | Msa1453280 | 0.811143 | 8.114652e-51 | -8.615850e-47 |
| Msa0068150 | Msa1453280 | 0.804943 | 1.694213e-49 | -8.615850e-47 |
| Msa0112670 | Msa1453280 | 0.801580 | 8.420177e-49 | -8.615850e-47 |
| Msa1375350 | Msa1453280 | 0.806099 | 9.698155e-50 | -8.615850e-47 |
| Msa1426110 | Msa1453280 | 0.821998 | 2.995693e-53 | -8.615850e-47 |
| Msa1442260 | Msa1453280 | 0.833970 | 3.926096e-56 | -8.615850e-47 |
| Msa1446100 | Msa1453280 | 0.812142 | 4.919410e-51 | -8.615850e-47 |
| Msa1447170 | Msa1453280 | 0.801282 | 9.692044e-49 | -8.615850e-47 |
| Msa0606100 | Msa1453280 | 0.829584 | 4.744325e-55 | -8.615850e-47 |
| Msa0615630 | Msa1453280 | 0.811205 | 7.864731e-51 | -8.615850e-47 |
| Msa0620500 | Msa1453280 | 0.804867 | 1.757969e-49 | -8.615850e-47 |
| Msa0621710 | Msa1453280 | 0.810474 | 1.132101e-50 | -8.615850e-47 |
| Msa0647050 | Msa1453280 | 0.823420 | 1.398330e-53 | -8.615850e-47 |
| Msa0698730 | Msa1453280 | 0.849783 | 2.590730e-60 | -8.615850e-47 |
| Msa0703600 | Msa1453280 | 0.812280 | 4.589710e-51 | -8.615850e-47 |
| Msa0709200 | Msa1453280 | 0.811358 | 7.285128e-51 | -8.615850e-47 |
| Msa0714790 | Msa1453280 | 0.808422 | 3.121522e-50 | -8.615850e-47 |
| Msa0735780 | Msa1453280 | 0.805465 | 1.317469e-49 | -8.615850e-47 |
| Msa0747740 | Msa1453280 | 0.802688 | 4.981665e-49 | -8.615850e-47 |
| Msa0756820 | Msa1453280 | 0.812441 | 4.233185e-51 | -8.615850e-47 |
| Msa0777750 | Msa1453280 | 0.806755 | 7.050227e-50 | -8.615850e-47 |
| Msa0821160 | Msa1453280 | 0.805070 | 1.593963e-49 | -8.615850e-47 |
| Msa0828190 | Msa1453280 | 0.998497 | 7.596887e-267 | -8.615850e-47 |
| Msa0127680 | Msa1453280 | 0.834341 | 3.170672e-56 | -8.615850e-47 |
| Msa0159590 | Msa1453280 | 0.811447 | 6.969471e-51 | -8.615850e-47 |
| Msa0200050 | Msa1453280 | 0.802592 | 5.213767e-49 | -8.615850e-47 |
| Msa0209980 | Msa1453280 | 0.833740 | 4.483344e-56 | -8.615850e-47 |
| Msa0227370 | Msa1453280 | 0.963808 | 1.535388e-122 | -8.615850e-47 |
| Msa1226520 | Msa1453280 | 0.804829 | 1.790593e-49 | -8.615850e-47 |
| Msa1244240 | Msa1453280 | 0.811801 | 5.836351e-51 | -8.615850e-47 |
| Msa1254540 | Msa1453280 | 0.805323 | 1.411390e-49 | -8.615850e-47 |
| Msa1261050 | Msa1453280 | 0.817417 | 3.332926e-52 | -8.615850e-47 |
| Msa1305780 | Msa1453280 | 0.846781 | 1.750710e-59 | -8.615850e-47 |
| Msa1339170 | Msa1453280 | 0.830925 | 2.231744e-55 | -8.615850e-47 |
| Msa1343180 | Msa1453280 | 0.809228 | 2.098435e-50 | -8.615850e-47 |
| Msa0367520 | Msa1453280 | 0.822665 | 2.098252e-53 | -8.615850e-47 |
| Msa0389950 | Msa1453280 | 0.804733 | 1.874308e-49 | -8.615850e-47 |
| Msa0422050 | Msa1453280 | 0.808019 | 3.803452e-50 | -8.615850e-47 |
| Msa1008670 | Msa1453280 | 0.803444 | 3.475578e-49 | -8.615850e-47 |
| Msa1033920 | Msa1453280 | 0.824307 | 8.664913e-54 | -8.615850e-47 |
| Msa1035650 | Msa1453280 | 0.829819 | 4.158672e-55 | -8.615850e-47 |
| Msa1059020 | Msa1453280 | 0.803461 | 3.448606e-49 | -8.615850e-47 |
| Msa1060900 | Msa1453280 | 0.822187 | 2.709285e-53 | -8.615850e-47 |
| Msa1078880 | Msa1453280 | 0.804596 | 2.002804e-49 | -8.615850e-47 |
| Msa1078970 | Msa1453280 | 0.816686 | 4.867071e-52 | -8.615850e-47 |
| Msa1081390 | Msa1453280 | 0.823078 | 1.680489e-53 | -8.615850e-47 |
| Msa1082200 | Msa1453280 | 0.807976 | 3.885925e-50 | -8.615850e-47 |
| Msa0265960 | Msa1453280 | 0.822071 | 2.882252e-53 | -8.615850e-47 |
| Msa0302830 | Msa1453280 | 0.931369 | 4.180939e-94 | -8.615850e-47 |
| Msa0343010 | Msa1453280 | 0.800306 | 1.533328e-48 | -8.615850e-47 |
| Msa1116190 | Msa1453280 | 0.812709 | 3.698645e-51 | -8.615850e-47 |
| Msa1116220 | Msa1453280 | 0.827500 | 1.511687e-54 | -8.615850e-47 |
| Msa1116660 | Msa1453280 | 0.828718 | 7.692564e-55 | -8.615850e-47 |
| Msa1116740 | Msa1453280 | 0.807295 | 5.419625e-50 | -8.615850e-47 |
| Msa1127280 | Msa1453280 | 0.809953 | 1.466108e-50 | -8.615850e-47 |
| Msa1132530 | Msa1453280 | 0.815922 | 7.211966e-52 | -8.615850e-47 |
| Msa1139050 | Msa1453280 | 0.802258 | 6.109166e-49 | -8.615850e-47 |
| Msa1148630 | Msa1453280 | 0.817404 | 3.356726e-52 | -8.615850e-47 |
| Msa1162880 | Msa1453280 | 0.830188 | 3.381050e-55 | -8.615850e-47 |
| Msa1165480 | Msa1453280 | 0.802278 | 6.053693e-49 | -8.615850e-47 |
| Msa1214350 | Msa1453280 | 0.815074 | 1.113819e-51 | -8.615850e-47 |
| Msa1215980 | Msa1453280 | 0.805213 | 1.487779e-49 | -8.615850e-47 |
| Msa0514580 | Msa1453280 | 0.804476 | 2.121608e-49 | -8.615850e-47 |
| Msa0550590 | Msa1453280 | 0.825224 | 5.266794e-54 | -8.615850e-47 |
| Msa0561560 | Msa1453280 | 0.815004 | 1.154541e-51 | -8.615850e-47 |
| Msa0563740 | Msa1453280 | 0.809010 | 2.336924e-50 | -8.615850e-47 |
| Msa0567170 | Msa1453280 | 0.805174 | 1.515935e-49 | -8.615850e-47 |
| Msa0571620 | Msa1453280 | 0.839929 | 1.180981e-57 | -8.615850e-47 |
| Msa0593400 | Msa1453280 | 0.805605 | 1.231657e-49 | -8.615850e-47 |
| Msa0888790 | Msa1453280 | 0.806476 | 8.075223e-50 | -8.615850e-47 |
| Msa0924430 | Msa1453280 | 0.812735 | 3.651476e-51 | -8.615850e-47 |
| Msa0931590 | Msa1453280 | 0.802640 | 5.097656e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1453280 | MtrunA17_Chr2g0329061 | 94.469 | 452 | 25 | 0 | 1 | 452 | 1 | 452 | 0.0 | 840 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1453280 | AT5G12930.1 | 48.601 | 393 | 176 | 11 | 1 | 384 | 1 | 376 | 3.58e-109 | 330 |
Find 119 sgRNAs with CRISPR-Local
Find 259 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTTACAAAACCATATTTAA+TGG | 0.181372 | tig0034564:-27084 | Msa1453280:intergenic |
| TTTCTTATTGTTGCTGTTAT+TGG | 0.223426 | tig0034564:+23025 | Msa1453280:CDS |
| TAGCCAGCTATTGCTGTCTT+TGG | 0.236408 | tig0034564:+27109 | Msa1453280:three_prime_UTR |
| AAAGAAGGATTTGGTTGTTC+TGG | 0.252617 | tig0034564:+25963 | Msa1453280:CDS |
| GTCAACATTCTACAGGTTTA+TGG | 0.253819 | tig0034564:+26989 | Msa1453280:three_prime_UTR |
| AATTGTAGATTCAGAATTCT+TGG | 0.260695 | tig0034564:-26520 | Msa1453280:intergenic |
| TTCCTTCTGTAATGAATATA+TGG | 0.287784 | tig0034564:+24827 | Msa1453280:CDS |
| AATGTCTGGCTTGTCGGATT+TGG | 0.295447 | tig0034564:+25240 | Msa1453280:CDS |
| TAGAGAAGGGTGACTTATAT+TGG | 0.298699 | tig0034564:-25195 | Msa1453280:intergenic |
| CTGAATTAGAAGACATTATA+CGG | 0.313995 | tig0034564:+25914 | Msa1453280:CDS |
| TTCAAAACTAAAGAAGGATT+TGG | 0.320274 | tig0034564:+25954 | Msa1453280:CDS |
| AGCCAGCTATTGCTGTCTTT+GGG | 0.321958 | tig0034564:+27110 | Msa1453280:three_prime_UTR |
| GCATCCAACTCTAAACAAAA+TGG | 0.348180 | tig0034564:+22677 | Msa1453280:five_prime_UTR |
| TTGCAATTAGATGAAACATT+TGG | 0.367954 | tig0034564:+24750 | Msa1453280:CDS |
| TTAAGAAATCCGTTGAGCTT+AGG | 0.369730 | tig0034564:+23092 | Msa1453280:CDS |
| AGATAACCTCATTTATGATA+TGG | 0.377526 | tig0034564:+26410 | Msa1453280:CDS |
| TGTGGCAGCTGAATTTCATT+TGG | 0.377686 | tig0034564:-26381 | Msa1453280:intergenic |
| TAAGAAGGAATTTCTTTAAG+AGG | 0.384480 | tig0034564:-26624 | Msa1453280:intergenic |
| TAAGAAATCCGTTGAGCTTA+GGG | 0.394216 | tig0034564:+23093 | Msa1453280:CDS |
| CAGACATTCTTCTCTCCTCT+TGG | 0.398506 | tig0034564:-25225 | Msa1453280:intergenic |
| AAAATGAAGTCTCACTGGTT+TGG | 0.399324 | tig0034564:-27222 | Msa1453280:intergenic |
| CAAATAGTGTAGCAAACAAT+AGG | 0.402326 | tig0034564:+26964 | Msa1453280:three_prime_UTR |
| AAGATGTTTATAATCTTAAG+AGG | 0.402964 | tig0034564:+25715 | Msa1453280:CDS |
| TGCTGCTGCTCAGTCCAAAA+AGG | 0.410742 | tig0034564:+23051 | Msa1453280:CDS |
| CCAAAATATGTAAGAACAAA+AGG | 0.411718 | tig0034564:-26898 | Msa1453280:intergenic |
| CTCAGAAGAGTTTAGCAGAT+TGG | 0.411871 | tig0034564:-25775 | Msa1453280:intergenic |
| AACAATTTCAAAACTAAAGA+AGG | 0.414561 | tig0034564:+25948 | Msa1453280:CDS |
| CACATCTGCTGCTGATATCC+AGG | 0.416831 | tig0034564:+25273 | Msa1453280:CDS |
| ACAATAAGAAACCGATGAAT+AGG | 0.418221 | tig0034564:-23013 | Msa1453280:intergenic |
| CAAGAGGAGAGAAGAATGTC+TGG | 0.419161 | tig0034564:+25226 | Msa1453280:CDS |
| GTTCATTAGAGGTTATAAAT+CGG | 0.419698 | tig0034564:-27265 | Msa1453280:intergenic |
| TGCAGGTTATGCAGCTTTCA+AGG | 0.419818 | tig0034564:+26328 | Msa1453280:intron |
| AATGAGCAGAGGTTCATTAG+AGG | 0.421638 | tig0034564:-27276 | Msa1453280:intergenic |
| TTCATTAGAGGTTATAAATC+GGG | 0.424201 | tig0034564:-27264 | Msa1453280:intergenic |
| CGTTAACAACCCGTCCTTGA+AGG | 0.436333 | tig0034564:-22913 | Msa1453280:intergenic |
| CTCTTGGTCTTCATTAGAGA+AGG | 0.441119 | tig0034564:-25209 | Msa1453280:intergenic |
| GGTAATGGTGAAGTAGCGTT+AGG | 0.448670 | tig0034564:-22779 | Msa1453280:intergenic |
| TTTGGTTGTTCTGGAACAAA+AGG | 0.449334 | tig0034564:+25972 | Msa1453280:CDS |
| CGACGGCGGGAGAGAGTGAT+TGG | 0.450699 | tig0034564:-22821 | Msa1453280:intergenic |
| GACTAATTACTCATTAAGTA+TGG | 0.452612 | tig0034564:+27165 | Msa1453280:three_prime_UTR |
| GTTGCCGTTAGAGTTGTTCA+TGG | 0.453633 | tig0034564:-22756 | Msa1453280:intergenic |
| TAATTGCAATTCTCCGTCCT+TGG | 0.457323 | tig0034564:-24736 | Msa1453280:intergenic |
| GTTGGTAGAATGACATCAAC+AGG | 0.459761 | tig0034564:-26498 | Msa1453280:intergenic |
| TGATGAACTTGCATTTGCTT+GGG | 0.460645 | tig0034564:+22979 | Msa1453280:CDS |
| GAGAAGAATGTCTGGCTTGT+CGG | 0.462441 | tig0034564:+25234 | Msa1453280:CDS |
| GCATTAGATTTCTGATAAGA+AGG | 0.463964 | tig0034564:-26639 | Msa1453280:intergenic |
| AGATCTTGTGCATTGTTGAC+AGG | 0.464468 | tig0034564:-26474 | Msa1453280:intergenic |
| TTATGCTCAGTTTAACAACT+TGG | 0.475767 | tig0034564:+25683 | Msa1453280:intron |
| ATTTGGAATACTTGCAGAGA+AGG | 0.479701 | tig0034564:-26364 | Msa1453280:intergenic |
| AGTTTGTTGATTGCGGTTGT+TGG | 0.481813 | tig0034564:+24787 | Msa1453280:CDS |
| GTGATGAACTTGCATTTGCT+TGG | 0.487161 | tig0034564:+22978 | Msa1453280:CDS |
| ATGAGGTTATCTCTCATTTG+TGG | 0.489300 | tig0034564:-26399 | Msa1453280:intergenic |
| TTGCAATTCTCCGTCCTTGG+TGG | 0.492663 | tig0034564:-24733 | Msa1453280:intergenic |
| AAAACAATTGTCACCTCGTA+AGG | 0.497486 | tig0034564:+26680 | Msa1453280:CDS |
| CGATGAAAATGAAGTCTCAC+TGG | 0.502795 | tig0034564:-27227 | Msa1453280:intergenic |
| AATGAGTAATTAGTCTATGA+AGG | 0.508399 | tig0034564:-27157 | Msa1453280:intergenic |
| CTGGATTAACCTTCAAGGAC+GGG | 0.510704 | tig0034564:+22904 | Msa1453280:CDS |
| ATGGCCTGGATTAACCTTCA+AGG | 0.513528 | tig0034564:+22899 | Msa1453280:CDS |
| ATAGGTAGTCAACATTCTAC+AGG | 0.514539 | tig0034564:+26982 | Msa1453280:three_prime_UTR |
| ATCCCAAAGACAGCAATAGC+TGG | 0.514581 | tig0034564:-27112 | Msa1453280:intergenic |
| GGCGGAGAGACGACGACGGC+GGG | 0.516365 | tig0034564:-22834 | Msa1453280:intergenic |
| TTGGAGGACCTCATTTCCAC+TGG | 0.518085 | tig0034564:-25176 | Msa1453280:intergenic |
| AAATTATAGATAGTAGCAGC+AGG | 0.520555 | tig0034564:+27043 | Msa1453280:three_prime_UTR |
| TGAAGGTTAATCCAGGCCAT+TGG | 0.520684 | tig0034564:-22896 | Msa1453280:intergenic |
| TGTCTCCTTGTAGGTTGCTG+TGG | 0.522837 | tig0034564:+26854 | Msa1453280:intron |
| AGTAGAAGACGATCTCTCAA+TGG | 0.533967 | tig0034564:+26714 | Msa1453280:CDS |
| CCGCCACAACGGTCGAGCCG+CGG | 0.535174 | tig0034564:+22852 | Msa1453280:CDS |
| TACCATATATTCATTACAGA+AGG | 0.538276 | tig0034564:-24829 | Msa1453280:intergenic |
| GTGCGAGTGCAAATAAGAGA+TGG | 0.543346 | tig0034564:+26745 | Msa1453280:CDS |
| GTAGATTCAGAATTCTTGGT+TGG | 0.551861 | tig0034564:-26516 | Msa1453280:intergenic |
| CGAATTAAGTTTGTTGATTG+CGG | 0.555870 | tig0034564:+24780 | Msa1453280:CDS |
| AGAAGGGTGACTTATATTGG+AGG | 0.556146 | tig0034564:-25192 | Msa1453280:intergenic |
| AAGAGCCTCCAGTGGAAATG+AGG | 0.559249 | tig0034564:+25168 | Msa1453280:CDS |
| TAAGAGGGACTGTGATGAGA+AGG | 0.561669 | tig0034564:+25731 | Msa1453280:CDS |
| CCGTCCTTGAAGGTTAATCC+AGG | 0.562538 | tig0034564:-22903 | Msa1453280:intergenic |
| GGAATACTTGCAGAGAAGGA+TGG | 0.566765 | tig0034564:-26360 | Msa1453280:intergenic |
| GCTAGCGCGGCTAGAACTGT+TGG | 0.566998 | tig0034564:+22944 | Msa1453280:CDS |
| ACTATCAGAATCAGAAGATG+AGG | 0.570063 | tig0034564:-26448 | Msa1453280:intergenic |
| CCGCGGCTCGACCGTTGTGG+CGG | 0.571817 | tig0034564:-22852 | Msa1453280:intergenic |
| AGCGCGGCTAGAACTGTTGG+TGG | 0.575091 | tig0034564:+22947 | Msa1453280:CDS |
| GTAATGGTGAAGTAGCGTTA+GGG | 0.578358 | tig0034564:-22778 | Msa1453280:intergenic |
| TCTTGGTCTTCATTAGAGAA+GGG | 0.582381 | tig0034564:-25208 | Msa1453280:intergenic |
| ACGCCGCGGCTCGACCGTTG+TGG | 0.583747 | tig0034564:-22855 | Msa1453280:intergenic |
| GCGGCTAGAACTGTTGGTGG+TGG | 0.584041 | tig0034564:+22950 | Msa1453280:CDS |
| CGGCGGGAGAGAGTGATTGG+TGG | 0.585218 | tig0034564:-22818 | Msa1453280:intergenic |
| ATCAGAAGATGAGGGGCTAG+TGG | 0.588405 | tig0034564:-26439 | Msa1453280:intergenic |
| CCTGGATTAACCTTCAAGGA+CGG | 0.589852 | tig0034564:+22903 | Msa1453280:CDS |
| TGCTGTCCATATCATAAATG+AGG | 0.592185 | tig0034564:-26416 | Msa1453280:intergenic |
| TGCGAGTGCAAATAAGAGAT+GGG | 0.593088 | tig0034564:+26746 | Msa1453280:CDS |
| CTATCAGAATCAGAAGATGA+GGG | 0.593200 | tig0034564:-26447 | Msa1453280:intergenic |
| TCAGCTGTTATCAAGCATGC+AGG | 0.594282 | tig0034564:+24638 | Msa1453280:CDS |
| AATTTCTTTAAGAGGACTAG+CGG | 0.594712 | tig0034564:-26616 | Msa1453280:intergenic |
| TTCTGAGGTTGCTAATAGCA+AGG | 0.595094 | tig0034564:+25791 | Msa1453280:CDS |
| TGATAGTATAGTAAATTGAG+AGG | 0.605111 | tig0034564:+22612 | Msa1453280:five_prime_UTR |
| AAGAAGTTATCCACCAAGGA+CGG | 0.607937 | tig0034564:+24723 | Msa1453280:CDS |
| AGATGTTTATAATCTTAAGA+GGG | 0.615181 | tig0034564:+25716 | Msa1453280:CDS |
| ACTGGAGGCTCTTCTACTCA+AGG | 0.617031 | tig0034564:-25158 | Msa1453280:intergenic |
| ATTGGCTTCGAAAATGAGAT+CGG | 0.626620 | tig0034564:-22878 | Msa1453280:intergenic |
| GAGGACCTCATTTCCACTGG+AGG | 0.630298 | tig0034564:-25173 | Msa1453280:intergenic |
| TGTGGAATGTAGCAGAGTAC+AGG | 0.632552 | tig0034564:+26872 | Msa1453280:three_prime_UTR |
| CTTCTCTAATGAAGACCAAG+AGG | 0.641341 | tig0034564:+25210 | Msa1453280:CDS |
| TCGTCGTCTCTCCGCCACAA+CGG | 0.642258 | tig0034564:+22841 | Msa1453280:CDS |
| GCTTCCATGAACAACTCTAA+CGG | 0.643301 | tig0034564:+22752 | Msa1453280:exon |
| CAATCTGCTAAACTCTTCTG+AGG | 0.648603 | tig0034564:+25776 | Msa1453280:CDS |
| ATAAGAAACCGATGAATAGG+CGG | 0.650348 | tig0034564:-23010 | Msa1453280:intergenic |
| TGGCGGAGAGACGACGACGG+CGG | 0.651162 | tig0034564:-22835 | Msa1453280:intergenic |
| TATACATACCCTAAGCTCAA+CGG | 0.651300 | tig0034564:-23101 | Msa1453280:intergenic |
| GGTGGAATTGAAACGAGACA+TGG | 0.665905 | tig0034564:-22800 | Msa1453280:intergenic |
| TTGAGTAGAAGAGCCTCCAG+TGG | 0.670401 | tig0034564:+25160 | Msa1453280:CDS |
| ATTGAAACGAGACATGGTAA+TGG | 0.670705 | tig0034564:-22794 | Msa1453280:intergenic |
| AATTATAGATAGTAGCAGCA+GGG | 0.674088 | tig0034564:+27044 | Msa1453280:three_prime_UTR |
| TATCAGAATCAGAAGATGAG+GGG | 0.677495 | tig0034564:-26446 | Msa1453280:intergenic |
| CTATAATGAGAAATGAGCAG+AGG | 0.685334 | tig0034564:-27287 | Msa1453280:intergenic |
| TAACGCTGATGAAGCTAGCG+CGG | 0.686137 | tig0034564:+22931 | Msa1453280:CDS |
| TAGCGGATTGAAATTTCGAG+CGG | 0.704247 | tig0034564:-26599 | Msa1453280:intergenic |
| GAAAATGAGATCGGACGCCG+CGG | 0.709704 | tig0034564:-22869 | Msa1453280:intergenic |
| TATCAAGAAGTTATCCACCA+AGG | 0.731353 | tig0034564:+24719 | Msa1453280:CDS |
| AATTAGAAGACATTATACGG+AGG | 0.745017 | tig0034564:+25917 | Msa1453280:CDS |
| TTGTGGCGGAGAGACGACGA+CGG | 0.751092 | tig0034564:-22838 | Msa1453270:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAATTATTTGAAAAGCATTT+TGG | + | tig0034564:23201-23220 | Msa1453280:intron | 15.0% |
| !!! | TTTTTAAATTAAGATTGTAG+AGG | - | tig0034564:23597-23616 | Msa1453280:intergenic | 15.0% |
| !! | TACTAAATATTGTCAAATAA+TGG | + | tig0034564:25009-25028 | Msa1453280:intron | 15.0% |
| !! | TTATAAATACATCATATATC+AGG | + | tig0034564:25353-25372 | Msa1453280:intron | 15.0% |
| !! | TAAGAATTTAAAAGTCAAAT+CGG | - | tig0034564:26161-26180 | Msa1453280:intergenic | 15.0% |
| !! | ATTTACAAAACCATATTTAA+TGG | - | tig0034564:27087-27106 | Msa1453280:intergenic | 15.0% |
| !!! | ATTTGTTATAATATTGTTGC+TGG | + | tig0034564:23151-23170 | Msa1453280:intron | 20.0% |
| !!! | TTTGTTATAATATTGTTGCT+GGG | + | tig0034564:23152-23171 | Msa1453280:intron | 20.0% |
| !!! | TTCAAATTTTCATCAGAAAT+TGG | - | tig0034564:23179-23198 | Msa1453280:intergenic | 20.0% |
| !! | TTGTTATGTTAATAGTCATT+TGG | + | tig0034564:23372-23391 | Msa1453280:intron | 20.0% |
| !! | TGTTATGTTAATAGTCATTT+GGG | + | tig0034564:23373-23392 | Msa1453280:intron | 20.0% |
| !!! | TGCTTTTGATTTTTTTATCA+TGG | + | tig0034564:24530-24549 | Msa1453280:intron | 20.0% |
| !! | TTGAATGTGTGTATTAATAT+TGG | + | tig0034564:24590-24609 | Msa1453280:intron | 20.0% |
| !!! | TTATTATATAGCTTTTCACT+TGG | + | tig0034564:24880-24899 | Msa1453280:intron | 20.0% |
| !! | AAAAACTTAGTGTTATATAG+CGG | + | tig0034564:24946-24965 | Msa1453280:intron | 20.0% |
| !! | AATTAGTAATTGCTTAATTG+TGG | + | tig0034564:25508-25527 | Msa1453280:intron | 20.0% |
| !! | ATAGAACTAATAAAAACACA+AGG | - | tig0034564:25624-25643 | Msa1453280:intergenic | 20.0% |
| !! | AAGATGTTTATAATCTTAAG+AGG | + | tig0034564:25715-25734 | Msa1453280:CDS | 20.0% |
| !! | AGATGTTTATAATCTTAAGA+GGG | + | tig0034564:25716-25735 | Msa1453280:CDS | 20.0% |
| !! | AACAATTTCAAAACTAAAGA+AGG | + | tig0034564:25948-25967 | Msa1453280:CDS | 20.0% |
| !! | AAGAATTTAAAAGTCAAATC+GGG | - | tig0034564:26160-26179 | Msa1453280:intergenic | 20.0% |
| !! | TGAAATGCTTCTTATATTAA+TGG | + | tig0034564:26289-26308 | Msa1453280:intron | 20.0% |
| !!! | TAAGTTTTAGCCATTAAATA+TGG | + | tig0034564:27074-27093 | Msa1453280:three_prime_UTR | 20.0% |
| ! | TGATAGTATAGTAAATTGAG+AGG | + | tig0034564:22612-22631 | Msa1453280:five_prime_UTR | 25.0% |
| !!! | TTTGAATTTTGAGTTTGAGA+GGG | - | tig0034564:22728-22747 | Msa1453280:intergenic | 25.0% |
| !! | TTTCTTATTGTTGCTGTTAT+TGG | + | tig0034564:23025-23044 | Msa1453280:CDS | 25.0% |
| ! | TTGTTATAATATTGTTGCTG+GGG | + | tig0034564:23153-23172 | Msa1453280:intron | 25.0% |
| ! | GTTATGTTAATAGTCATTTG+GGG | + | tig0034564:23374-23393 | Msa1453280:intron | 25.0% |
| !! | TTTCACTAAAAAAGACCTTT+TGG | + | tig0034564:23456-23475 | Msa1453280:intron | 25.0% |
| ! | TTTCTTTATATCCGATTTAG+AGG | + | tig0034564:24145-24164 | Msa1453280:intron | 25.0% |
| !!! | GAATTCGAGATCTTTTAAAA+TGG | + | tig0034564:24186-24205 | Msa1453280:intron | 25.0% |
| ! | ATCTTCAATATGAGAAAACT+TGG | + | tig0034564:24396-24415 | Msa1453280:intron | 25.0% |
| ! | TTAATACACACATTCAAAGT+TGG | - | tig0034564:24587-24606 | Msa1453280:intergenic | 25.0% |
| ! | TTGCAATTAGATGAAACATT+TGG | + | tig0034564:24750-24769 | Msa1453280:CDS | 25.0% |
| ! | TTCCTTCTGTAATGAATATA+TGG | + | tig0034564:24827-24846 | Msa1453280:CDS | 25.0% |
| ! | TACCATATATTCATTACAGA+AGG | - | tig0034564:24832-24851 | Msa1453280:intergenic | 25.0% |
| ! | AACTCATATACTTACTGTAT+TGG | + | tig0034564:24855-24874 | Msa1453280:intron | 25.0% |
| ! | ACTCATATACTTACTGTATT+GGG | + | tig0034564:24856-24875 | Msa1453280:intron | 25.0% |
| ! | TTAGTACTAAATACGTATCA+TGG | - | tig0034564:24995-25014 | Msa1453280:intergenic | 25.0% |
| ! | ATATTGTCAAATAATGGTAG+TGG | + | tig0034564:25015-25034 | Msa1453280:intron | 25.0% |
| ! | ATTGACATAGTTAAATGCAA+TGG | + | tig0034564:25538-25557 | Msa1453280:intron | 25.0% |
| !!! | TAATTTGTTTTACTCTCTTG+CGG | + | tig0034564:25580-25599 | Msa1453280:intron | 25.0% |
| ! | TTGTAGTGAAAATGATAAGT+GGG | - | tig0034564:25877-25896 | Msa1453280:intergenic | 25.0% |
| ! | ATTGTAGTGAAAATGATAAG+TGG | - | tig0034564:25878-25897 | Msa1453280:intergenic | 25.0% |
| ! | CTGAATTAGAAGACATTATA+CGG | + | tig0034564:25914-25933 | Msa1453280:CDS | 25.0% |
| ! | TTCAAAACTAAAGAAGGATT+TGG | + | tig0034564:25954-25973 | Msa1453280:CDS | 25.0% |
| !! | ACAAAAGGTACATATATACA+TGG | + | tig0034564:25987-26006 | Msa1453280:intron | 25.0% |
| ! | TACATGGTAGATATAAACAA+TGG | + | tig0034564:26003-26022 | Msa1453280:intron | 25.0% |
| ! | AGATAACCTCATTTATGATA+TGG | + | tig0034564:26410-26429 | Msa1453280:CDS | 25.0% |
| ! | AATTGTAGATTCAGAATTCT+TGG | - | tig0034564:26523-26542 | Msa1453280:intergenic | 25.0% |
| ! | CAAAAATCTTAAATTCGTCA+GGG | + | tig0034564:26562-26581 | Msa1453280:CDS | 25.0% |
| ! | TAAGAAGGAATTTCTTTAAG+AGG | - | tig0034564:26627-26646 | Msa1453280:intergenic | 25.0% |
| ! | CCAAAATATGTAAGAACAAA+AGG | - | tig0034564:26901-26920 | Msa1453280:intergenic | 25.0% |
| !! | CCTTTTGTTCTTACATATTT+TGG | + | tig0034564:26898-26917 | Msa1453280:three_prime_UTR | 25.0% |
| !! | AATGAGTAATTAGTCTATGA+AGG | - | tig0034564:27160-27179 | Msa1453280:intergenic | 25.0% |
| ! | GACTAATTACTCATTAAGTA+TGG | + | tig0034564:27165-27184 | Msa1453280:three_prime_UTR | 25.0% |
| ! | TTCATTAGAGGTTATAAATC+GGG | - | tig0034564:27267-27286 | Msa1453280:intergenic | 25.0% |
| ! | GTTCATTAGAGGTTATAAAT+CGG | - | tig0034564:27268-27287 | Msa1453280:intergenic | 25.0% |
| !!! | TATGCCATTTTGTTTAGAGT+TGG | - | tig0034564:22684-22703 | Msa1453280:intergenic | 30.0% |
| !!! | GTTTGAATTTTGAGTTTGAG+AGG | - | tig0034564:22729-22748 | Msa1453280:intergenic | 30.0% |
| ACAATAAGAAACCGATGAAT+AGG | - | tig0034564:23016-23035 | Msa1453280:intergenic | 30.0% | |
| GCAAAATGTTCGTAAATTAG+TGG | + | tig0034564:23330-23349 | Msa1453280:intron | 30.0% | |
| !! | TAGTGGTTATGTTAGTTTGT+AGG | + | tig0034564:23347-23366 | Msa1453280:intron | 30.0% |
| !! | AGTGGTTATGTTAGTTTGTA+GGG | + | tig0034564:23348-23367 | Msa1453280:intron | 30.0% |
| TGTAGTGTTTGGCAAAATTA+GGG | - | tig0034564:23668-23687 | Msa1453280:intergenic | 30.0% | |
| TTGTAGTGTTTGGCAAAATT+AGG | - | tig0034564:23669-23688 | Msa1453280:intergenic | 30.0% | |
| CTGATTGAATTTGTAGTGTT+TGG | - | tig0034564:23679-23698 | Msa1453280:intergenic | 30.0% | |
| TCAAATAGTAGCTTGAGTTA+AGG | - | tig0034564:23856-23875 | Msa1453280:intergenic | 30.0% | |
| ACTATGACAACAACATTTCT+TGG | - | tig0034564:23904-23923 | Msa1453280:intergenic | 30.0% | |
| ACTTATAGCATCCTCTAAAT+CGG | - | tig0034564:24159-24178 | Msa1453280:intergenic | 30.0% | |
| TTCTGCACAGTTATAAATTG+CGG | - | tig0034564:24342-24361 | Msa1453280:intergenic | 30.0% | |
| ! | TTGTTTCATCACTATTTTCC+AGG | + | tig0034564:24614-24633 | Msa1453280:intron | 30.0% |
| !! | CGAATTAAGTTTGTTGATTG+CGG | + | tig0034564:24780-24799 | Msa1453280:CDS | 30.0% |
| CTCATATACTTACTGTATTG+GGG | + | tig0034564:24857-24876 | Msa1453280:intron | 30.0% | |
| !! | AGTTTTTCAATAGACACGTT+AGG | - | tig0034564:24933-24952 | Msa1453280:intergenic | 30.0% |
| ACACTGAAGAAAATAATACC+TGG | - | tig0034564:25294-25313 | Msa1453280:intergenic | 30.0% | |
| AATAAAAACACAAGGAAACC+AGG | - | tig0034564:25616-25635 | Msa1453280:intergenic | 30.0% | |
| TTATGCTCAGTTTAACAACT+TGG | + | tig0034564:25683-25702 | Msa1453280:intron | 30.0% | |
| AATTAGAAGACATTATACGG+AGG | + | tig0034564:25917-25936 | Msa1453280:CDS | 30.0% | |
| AATGCACCAATAGGTAATTT+AGG | + | tig0034564:26026-26045 | Msa1453280:intron | 30.0% | |
| TATGCACCTAAATTACCTAT+TGG | - | tig0034564:26035-26054 | Msa1453280:intergenic | 30.0% | |
| !! | ATTGACTCACTTGTTATTGT+TGG | + | tig0034564:26060-26079 | Msa1453280:intron | 30.0% |
| !! | GACGAATTTAAGATTTTTGC+TGG | - | tig0034564:26561-26580 | Msa1453280:intergenic | 30.0% |
| GCAAAAATCTTAAATTCGTC+AGG | + | tig0034564:26561-26580 | Msa1453280:CDS | 30.0% | |
| ! | AATTTCTTTAAGAGGACTAG+CGG | - | tig0034564:26619-26638 | Msa1453280:intergenic | 30.0% |
| GCATTAGATTTCTGATAAGA+AGG | - | tig0034564:26642-26661 | Msa1453280:intergenic | 30.0% | |
| CAAATAGTGTAGCAAACAAT+AGG | + | tig0034564:26964-26983 | Msa1453280:three_prime_UTR | 30.0% | |
| AAATTATAGATAGTAGCAGC+AGG | + | tig0034564:27043-27062 | Msa1453280:three_prime_UTR | 30.0% | |
| AATTATAGATAGTAGCAGCA+GGG | + | tig0034564:27044-27063 | Msa1453280:three_prime_UTR | 30.0% | |
| GCATCCAACTCTAAACAAAA+TGG | + | tig0034564:22677-22696 | Msa1453280:five_prime_UTR | 35.0% | |
| ATTGAAACGAGACATGGTAA+TGG | - | tig0034564:22797-22816 | Msa1453280:intergenic | 35.0% | |
| ! | ATTGGCTTCGAAAATGAGAT+CGG | - | tig0034564:22881-22900 | Msa1453280:intergenic | 35.0% |
| TGATGAACTTGCATTTGCTT+GGG | + | tig0034564:22979-22998 | Msa1453280:CDS | 35.0% | |
| ! | ATCTTTTTCCGCCTATTCAT+CGG | + | tig0034564:23002-23021 | Msa1453280:CDS | 35.0% |
| ATAAGAAACCGATGAATAGG+CGG | - | tig0034564:23013-23032 | Msa1453280:intergenic | 35.0% | |
| ! | GAAAATCTCTCGATCCTTTT+TGG | - | tig0034564:23068-23087 | Msa1453280:intergenic | 35.0% |
| TTAAGAAATCCGTTGAGCTT+AGG | + | tig0034564:23092-23111 | Msa1453280:CDS | 35.0% | |
| TAAGAAATCCGTTGAGCTTA+GGG | + | tig0034564:23093-23112 | Msa1453280:CDS | 35.0% | |
| TATACATACCCTAAGCTCAA+CGG | - | tig0034564:23104-23123 | Msa1453280:intergenic | 35.0% | |
| GTAGTGTTTGGCAAAATTAG+GGG | - | tig0034564:23667-23686 | Msa1453280:intergenic | 35.0% | |
| ! | AGCTAGCTTATAACTGATAG+CGG | - | tig0034564:23711-23730 | Msa1453280:intergenic | 35.0% |
| !! | TTATAGCGGATAGCTGATAA+TGG | - | tig0034564:23730-23749 | Msa1453280:intergenic | 35.0% |
| !!! | TTTTTTACCAAACAGAGCCT+TGG | + | tig0034564:23826-23845 | Msa1453280:intron | 35.0% |
| TTACAATCACCACGCAATTA+CGG | - | tig0034564:24008-24027 | Msa1453280:intergenic | 35.0% | |
| ! | CAATGTGTATTGTTGGTGTT+GGG | - | tig0034564:24286-24305 | Msa1453280:intergenic | 35.0% |
| ACAATGTGTATTGTTGGTGT+TGG | - | tig0034564:24287-24306 | Msa1453280:intergenic | 35.0% | |
| CACAGTTATAAATTGCGGAT+GGG | - | tig0034564:24337-24356 | Msa1453280:intergenic | 35.0% | |
| TATCAAGAAGTTATCCACCA+AGG | + | tig0034564:24719-24738 | Msa1453280:CDS | 35.0% | |
| !! | ACTCATTGACTTTGTTAGCA+GGG | + | tig0034564:25133-25152 | Msa1453280:intron | 35.0% |
| TAGAGAAGGGTGACTTATAT+TGG | - | tig0034564:25198-25217 | Msa1453280:intergenic | 35.0% | |
| ! | TCTTGGTCTTCATTAGAGAA+GGG | - | tig0034564:25211-25230 | Msa1453280:intergenic | 35.0% |
| GTGTCATCGTTGAATGATAT+TGG | + | tig0034564:25310-25329 | Msa1453280:intron | 35.0% | |
| GGTTATCTGTCAAATGATAC+AGG | + | tig0034564:25374-25393 | Msa1453280:intron | 35.0% | |
| ! | TCCATGGTCTTGACTTTAAT+TGG | + | tig0034564:25472-25491 | Msa1453280:intron | 35.0% |
| TCCAATTAAAGTCAAGACCA+TGG | - | tig0034564:25476-25495 | Msa1453280:intergenic | 35.0% | |
| ! | ATTGGTCAGCTCTTTTATTG+TGG | - | tig0034564:25760-25779 | Msa1453280:intergenic | 35.0% |
| ! | TGCATTTTATTCTCCAGAGT+TGG | + | tig0034564:25821-25840 | Msa1453280:intron | 35.0% |
| !! | ATGATAAGTGGGTTAGGAAA+GGG | - | tig0034564:25866-25885 | Msa1453280:intergenic | 35.0% |
| !! | AATGATAAGTGGGTTAGGAA+AGG | - | tig0034564:25867-25886 | Msa1453280:intergenic | 35.0% |
| ! | GTGAAAATGATAAGTGGGTT+AGG | - | tig0034564:25872-25891 | Msa1453280:intergenic | 35.0% |
| ! | AAAGAAGGATTTGGTTGTTC+TGG | + | tig0034564:25963-25982 | Msa1453280:CDS | 35.0% |
| !! | TTTGGTTGTTCTGGAACAAA+AGG | + | tig0034564:25972-25991 | Msa1453280:CDS | 35.0% |
| AAACAATGGAATGCACCAAT+AGG | + | tig0034564:26017-26036 | Msa1453280:intron | 35.0% | |
| !! | ACCTGCAGTCAATTTTGAAA+GGG | - | tig0034564:26315-26334 | Msa1453280:intergenic | 35.0% |
| ! | AACCTGCAGTCAATTTTGAA+AGG | - | tig0034564:26316-26335 | Msa1453280:intergenic | 35.0% |
| ! | ATTTGGAATACTTGCAGAGA+AGG | - | tig0034564:26367-26386 | Msa1453280:intergenic | 35.0% |
| ATGAGGTTATCTCTCATTTG+TGG | - | tig0034564:26402-26421 | Msa1453280:intergenic | 35.0% | |
| TGCTGTCCATATCATAAATG+AGG | - | tig0034564:26419-26438 | Msa1453280:intergenic | 35.0% | |
| TATCAGAATCAGAAGATGAG+GGG | - | tig0034564:26449-26468 | Msa1453280:intergenic | 35.0% | |
| CTATCAGAATCAGAAGATGA+GGG | - | tig0034564:26450-26469 | Msa1453280:intergenic | 35.0% | |
| ACTATCAGAATCAGAAGATG+AGG | - | tig0034564:26451-26470 | Msa1453280:intergenic | 35.0% | |
| GTAGATTCAGAATTCTTGGT+TGG | - | tig0034564:26519-26538 | Msa1453280:intergenic | 35.0% | |
| ! | TACGAGGTGACAATTGTTTT+TGG | - | tig0034564:26680-26699 | Msa1453280:intergenic | 35.0% |
| AAAACAATTGTCACCTCGTA+AGG | + | tig0034564:26680-26699 | Msa1453280:CDS | 35.0% | |
| !!! | CTCTTTTTTAAGTCCTTACG+AGG | - | tig0034564:26696-26715 | Msa1453280:intergenic | 35.0% |
| AGTAAGTCAGCTCAAAATTC+TGG | + | tig0034564:26779-26798 | Msa1453280:intron | 35.0% | |
| CACGAATAAGCATATGTACA+TGG | - | tig0034564:26830-26849 | Msa1453280:intergenic | 35.0% | |
| ATAGGTAGTCAACATTCTAC+AGG | + | tig0034564:26982-27001 | Msa1453280:three_prime_UTR | 35.0% | |
| GTCAACATTCTACAGGTTTA+TGG | + | tig0034564:26989-27008 | Msa1453280:three_prime_UTR | 35.0% | |
| ! | AAAATGAAGTCTCACTGGTT+TGG | - | tig0034564:27225-27244 | Msa1453280:intergenic | 35.0% |
| GCTTCCATGAACAACTCTAA+CGG | + | tig0034564:22752-22771 | Msa1453280:exon | 40.0% | |
| GTAATGGTGAAGTAGCGTTA+GGG | - | tig0034564:22781-22800 | Msa1453280:intergenic | 40.0% | |
| ! | GATCTCATTTTCGAAGCCAA+TGG | + | tig0034564:22880-22899 | Msa1453280:CDS | 40.0% |
| GTGATGAACTTGCATTTGCT+TGG | + | tig0034564:22978-22997 | Msa1453280:CDS | 40.0% | |
| ! | ATAGTCATTTGGGGTCTGTT+TGG | + | tig0034564:23383-23402 | Msa1453280:intron | 40.0% |
| AGAAAGTGACGGTTACCAAA+AGG | - | tig0034564:23474-23493 | Msa1453280:intergenic | 40.0% | |
| ATAAGCTCGTGAGAAAGTGA+CGG | - | tig0034564:23485-23504 | Msa1453280:intergenic | 40.0% | |
| ! | GCTGATAAGCTAGCTTATAG+CGG | - | tig0034564:23744-23763 | Msa1453280:intergenic | 40.0% |
| ! | GCTGATAAGCTAGCTTATAG+CGG | - | tig0034564:23744-23763 | Msa1453280:intergenic | 40.0% |
| ATAGTAACCAATAGTCCGAG+TGG | + | tig0034564:23919-23938 | Msa1453280:intron | 40.0% | |
| ATTACGGAATGATGCAGTTG+CGG | - | tig0034564:23992-24011 | Msa1453280:intergenic | 40.0% | |
| GCTGTGACAATGTGTATTGT+TGG | - | tig0034564:24293-24312 | Msa1453280:intergenic | 40.0% | |
| ATAAATTGCGGATGGGATCA+CGG | - | tig0034564:24330-24349 | Msa1453280:intergenic | 40.0% | |
| GCACAGTTATAAATTGCGGA+TGG | - | tig0034564:24338-24357 | Msa1453280:intergenic | 40.0% | |
| TGGTTGAGCAAGTTTCTCAA+TGG | + | tig0034564:24416-24435 | Msa1453280:intron | 40.0% | |
| GGTTGAGCAAGTTTCTCAAT+GGG | + | tig0034564:24417-24436 | Msa1453280:intron | 40.0% | |
| AAGAAGTTATCCACCAAGGA+CGG | + | tig0034564:24723-24742 | Msa1453280:CDS | 40.0% | |
| TAATTGCAATTCTCCGTCCT+TGG | - | tig0034564:24739-24758 | Msa1453280:intergenic | 40.0% | |
| !! | AGTTTGTTGATTGCGGTTGT+TGG | + | tig0034564:24787-24806 | Msa1453280:CDS | 40.0% |
| !!! | TATAGCTTTTCACTTGGTGC+TGG | + | tig0034564:24886-24905 | Msa1453280:intron | 40.0% |
| !!! | ATAGCTTTTCACTTGGTGCT+GGG | + | tig0034564:24887-24906 | Msa1453280:intron | 40.0% |
| !! | CACTCATTGACTTTGTTAGC+AGG | + | tig0034564:25132-25151 | Msa1453280:intron | 40.0% |
| AGAAGGGTGACTTATATTGG+AGG | - | tig0034564:25195-25214 | Msa1453280:intergenic | 40.0% | |
| ! | CTCTTGGTCTTCATTAGAGA+AGG | - | tig0034564:25212-25231 | Msa1453280:intergenic | 40.0% |
| CTTCTCTAATGAAGACCAAG+AGG | + | tig0034564:25210-25229 | Msa1453280:CDS | 40.0% | |
| CTCAGAAGAGTTTAGCAGAT+TGG | - | tig0034564:25778-25797 | Msa1453280:intergenic | 40.0% | |
| CAATCTGCTAAACTCTTCTG+AGG | + | tig0034564:25776-25795 | Msa1453280:CDS | 40.0% | |
| !! | TTCTGAGGTTGCTAATAGCA+AGG | + | tig0034564:25791-25810 | Msa1453280:CDS | 40.0% |
| GAAGTTGCAATTTCCAACTC+TGG | - | tig0034564:25837-25856 | Msa1453280:intergenic | 40.0% | |
| !! | TGATAAGTGGGTTAGGAAAG+GGG | - | tig0034564:25865-25884 | Msa1453280:intergenic | 40.0% |
| TGTGGCAGCTGAATTTCATT+TGG | - | tig0034564:26384-26403 | Msa1453280:intergenic | 40.0% | |
| AGATCTTGTGCATTGTTGAC+AGG | - | tig0034564:26477-26496 | Msa1453280:intergenic | 40.0% | |
| ! | GTTGGTAGAATGACATCAAC+AGG | - | tig0034564:26501-26520 | Msa1453280:intergenic | 40.0% |
| !! | TAGCGGATTGAAATTTCGAG+CGG | - | tig0034564:26602-26621 | Msa1453280:intergenic | 40.0% |
| AGTAGAAGACGATCTCTCAA+TGG | + | tig0034564:26714-26733 | Msa1453280:CDS | 40.0% | |
| TGCGAGTGCAAATAAGAGAT+GGG | + | tig0034564:26746-26765 | Msa1453280:CDS | 40.0% | |
| CGATGAAAATGAAGTCTCAC+TGG | - | tig0034564:27230-27249 | Msa1453280:intergenic | 40.0% | |
| AATGAGCAGAGGTTCATTAG+AGG | - | tig0034564:27279-27298 | Msa1453280:intergenic | 40.0% | |
| GTTGCCGTTAGAGTTGTTCA+TGG | - | tig0034564:22759-22778 | Msa1453280:intergenic | 45.0% | |
| ! | GGTAATGGTGAAGTAGCGTT+AGG | - | tig0034564:22782-22801 | Msa1453280:intergenic | 45.0% |
| GGTGGAATTGAAACGAGACA+TGG | - | tig0034564:22803-22822 | Msa1453280:intergenic | 45.0% | |
| TGAAGGTTAATCCAGGCCAT+TGG | - | tig0034564:22899-22918 | Msa1453280:intergenic | 45.0% | |
| ATGGCCTGGATTAACCTTCA+AGG | + | tig0034564:22899-22918 | Msa1453280:CDS | 45.0% | |
| CCTGGATTAACCTTCAAGGA+CGG | + | tig0034564:22903-22922 | Msa1453280:CDS | 45.0% | |
| CTGGATTAACCTTCAAGGAC+GGG | + | tig0034564:22904-22923 | Msa1453280:CDS | 45.0% | |
| GCTTGAGTTAAGGAACACCA+AGG | - | tig0034564:23846-23865 | Msa1453280:intergenic | 45.0% | |
| AACCAATAGTCCGAGTGGTA+AGG | + | tig0034564:23924-23943 | Msa1453280:intron | 45.0% | |
| TTCCTTACCACTCGGACTAT+TGG | - | tig0034564:23929-23948 | Msa1453280:intergenic | 45.0% | |
| ! | GGTTTGAGTTCCTTACCACT+CGG | - | tig0034564:23937-23956 | Msa1453280:intergenic | 45.0% |
| TGCATCATTCCGTAATTGCG+TGG | + | tig0034564:23996-24015 | Msa1453280:intron | 45.0% | |
| !! | TGAGGTGTTGCACGGATATT+AGG | - | tig0034564:24035-24054 | Msa1453280:intergenic | 45.0% |
| !! | CACTACATTGAGGTGTTGCA+CGG | - | tig0034564:24043-24062 | Msa1453280:intergenic | 45.0% |
| GTGCAACACCTCAATGTAGT+GGG | + | tig0034564:24042-24061 | Msa1453280:intron | 45.0% | |
| ACACATTGTCACAGCCACAA+TGG | + | tig0034564:24298-24317 | Msa1453280:intron | 45.0% | |
| CCACATCAACCACTTGCTTA+CGG | - | tig0034564:24367-24386 | Msa1453280:intergenic | 45.0% | |
| ! | CGTAAGCAAGTGGTTGATGT+GGG | + | tig0034564:24365-24384 | Msa1453280:intron | 45.0% |
| ! | TGCTTGATAACAGCTGATCC+TGG | - | tig0034564:24635-24654 | Msa1453280:intergenic | 45.0% |
| TCAGCTGTTATCAAGCATGC+AGG | + | tig0034564:24638-24657 | Msa1453280:CDS | 45.0% | |
| TGTTCCAGTGTCGTCATTTG+CGG | - | tig0034564:25094-25113 | Msa1453280:intergenic | 45.0% | |
| CAGACATTCTTCTCTCCTCT+TGG | - | tig0034564:25228-25247 | Msa1453280:intergenic | 45.0% | |
| CAAGAGGAGAGAAGAATGTC+TGG | + | tig0034564:25226-25245 | Msa1453280:CDS | 45.0% | |
| ! | GAGAAGAATGTCTGGCTTGT+CGG | + | tig0034564:25234-25253 | Msa1453280:CDS | 45.0% |
| ! | AATGTCTGGCTTGTCGGATT+TGG | + | tig0034564:25240-25259 | Msa1453280:CDS | 45.0% |
| TGTAGCCTGTTTGCATTCCA+TGG | + | tig0034564:25456-25475 | Msa1453280:intron | 45.0% | |
| CAAGACCATGGAATGCAAAC+AGG | - | tig0034564:25464-25483 | Msa1453280:intergenic | 45.0% | |
| TAAGAGGGACTGTGATGAGA+AGG | + | tig0034564:25731-25750 | Msa1453280:CDS | 45.0% | |
| GCCCTTTCAAAATTGACTGC+AGG | + | tig0034564:26311-26330 | Msa1453280:intron | 45.0% | |
| TGCAGGTTATGCAGCTTTCA+AGG | + | tig0034564:26328-26347 | Msa1453280:intron | 45.0% | |
| GGAATACTTGCAGAGAAGGA+TGG | - | tig0034564:26363-26382 | Msa1453280:intergenic | 45.0% | |
| GTGCGAGTGCAAATAAGAGA+TGG | + | tig0034564:26745-26764 | Msa1453280:CDS | 45.0% | |
| TCGTGTTCATGTCTCCTTGT+AGG | + | tig0034564:26845-26864 | Msa1453280:intron | 45.0% | |
| ACATTCCACAGCAACCTACA+AGG | - | tig0034564:26862-26881 | Msa1453280:intergenic | 45.0% | |
| TGTGGAATGTAGCAGAGTAC+AGG | + | tig0034564:26872-26891 | Msa1453280:three_prime_UTR | 45.0% | |
| TAGCCAGCTATTGCTGTCTT+TGG | + | tig0034564:27109-27128 | Msa1453280:three_prime_UTR | 45.0% | |
| AGCCAGCTATTGCTGTCTTT+GGG | + | tig0034564:27110-27129 | Msa1453280:three_prime_UTR | 45.0% | |
| ATCCCAAAGACAGCAATAGC+TGG | - | tig0034564:27115-27134 | Msa1453280:intergenic | 45.0% | |
| ! | CATTTTCGAAGCCAATGGCC+TGG | + | tig0034564:22885-22904 | Msa1453280:CDS | 50.0% |
| CCGTCCTTGAAGGTTAATCC+AGG | - | tig0034564:22906-22925 | Msa1453280:intergenic | 50.0% | |
| CGTTAACAACCCGTCCTTGA+AGG | - | tig0034564:22916-22935 | Msa1453280:intergenic | 50.0% | |
| TAACGCTGATGAAGCTAGCG+CGG | + | tig0034564:22931-22950 | Msa1453280:CDS | 50.0% | |
| TGCTGCTGCTCAGTCCAAAA+AGG | + | tig0034564:23051-23070 | Msa1453280:CDS | 50.0% | |
| TGGGGTCTGTTTGGTAAGAC+AGG | + | tig0034564:23392-23411 | Msa1453280:intron | 50.0% | |
| AGGAACACCAAGGCTCTGTT+TGG | - | tig0034564:23836-23855 | Msa1453280:intergenic | 50.0% | |
| ACTGCAACTGTGCACTTGGT+AGG | - | tig0034564:23958-23977 | Msa1453280:intergenic | 50.0% | |
| CACAACTGCAACTGTGCACT+TGG | - | tig0034564:23962-23981 | Msa1453280:intergenic | 50.0% | |
| CGTGCAACACCTCAATGTAG+TGG | + | tig0034564:24041-24060 | Msa1453280:intron | 50.0% | |
| CCATTGCACCCACTACATTG+AGG | - | tig0034564:24053-24072 | Msa1453280:intergenic | 50.0% | |
| !! | CCTCAATGTAGTGGGTGCAA+TGG | + | tig0034564:24050-24069 | Msa1453280:intron | 50.0% |
| GATCACGGATATGGCCATTG+TGG | - | tig0034564:24315-24334 | Msa1453280:intergenic | 50.0% | |
| TGCAGAACACCGTAAGCAAG+TGG | + | tig0034564:24355-24374 | Msa1453280:intron | 50.0% | |
| ! | CCGTAAGCAAGTGGTTGATG+TGG | + | tig0034564:24364-24383 | Msa1453280:intron | 50.0% |
| TTGCAATTCTCCGTCCTTGG+TGG | - | tig0034564:24736-24755 | Msa1453280:intergenic | 50.0% | |
| CTATCCGCAAATGACGACAC+TGG | + | tig0034564:25087-25106 | Msa1453280:intron | 50.0% | |
| ACTGGAGGCTCTTCTACTCA+AGG | - | tig0034564:25161-25180 | Msa1453280:intergenic | 50.0% | |
| TTGAGTAGAAGAGCCTCCAG+TGG | + | tig0034564:25160-25179 | Msa1453280:CDS | 50.0% | |
| AAGAGCCTCCAGTGGAAATG+AGG | + | tig0034564:25168-25187 | Msa1453280:CDS | 50.0% | |
| TTGGAGGACCTCATTTCCAC+TGG | - | tig0034564:25179-25198 | Msa1453280:intergenic | 50.0% | |
| CACATCTGCTGCTGATATCC+AGG | + | tig0034564:25273-25292 | Msa1453280:CDS | 50.0% | |
| ! | TCTTGCGGTGCTTCTTTTCC+TGG | + | tig0034564:25595-25614 | Msa1453280:intron | 50.0% |
| ATCAGAAGATGAGGGGCTAG+TGG | - | tig0034564:26442-26461 | Msa1453280:intergenic | 50.0% | |
| TGTCTCCTTGTAGGTTGCTG+TGG | + | tig0034564:26854-26873 | Msa1453280:intron | 50.0% | |
| GAAAATGAGATCGGACGCCG+CGG | - | tig0034564:22872-22891 | Msa1453280:intergenic | 55.0% | |
| GCAATGGACGCATTGCGCAT+CGG | + | tig0034564:24066-24085 | Msa1453280:intron | 55.0% | |
| ! | CATTGCGCATCGGTCGCATT+AGG | + | tig0034564:24076-24095 | Msa1453280:intron | 55.0% |
| TGCGGATGGGATCACGGATA+TGG | - | tig0034564:24324-24343 | Msa1453280:intergenic | 55.0% | |
| GAGGACCTCATTTCCACTGG+AGG | - | tig0034564:25176-25195 | Msa1453280:intergenic | 55.0% | |
| ! | TTGTGGCGGAGAGACGACGA+CGG | - | tig0034564:22841-22860 | Msa1453280:intergenic | 60.0% |
| TCGTCGTCTCTCCGCCACAA+CGG | + | tig0034564:22841-22860 | Msa1453280:CDS | 60.0% | |
| GCTAGCGCGGCTAGAACTGT+TGG | + | tig0034564:22944-22963 | Msa1453280:CDS | 60.0% | |
| AGCGCGGCTAGAACTGTTGG+TGG | + | tig0034564:22947-22966 | Msa1453280:CDS | 60.0% | |
| ! | GCGGCTAGAACTGTTGGTGG+TGG | + | tig0034564:22950-22969 | Msa1453280:CDS | 60.0% |
| ! | GCATCGGTCGCATTAGGCTG+TGG | + | tig0034564:24082-24101 | Msa1453280:intron | 60.0% |
| CGGCGGGAGAGAGTGATTGG+TGG | - | tig0034564:22821-22840 | Msa1453280:intergenic | 65.0% | |
| CGACGGCGGGAGAGAGTGAT+TGG | - | tig0034564:22824-22843 | Msa1453280:intergenic | 65.0% | |
| TGGCGGAGAGACGACGACGG+CGG | - | tig0034564:22838-22857 | Msa1453280:intergenic | 70.0% | |
| GGCGGAGAGACGACGACGGC+GGG | - | tig0034564:22837-22856 | Msa1453280:intergenic | 75.0% | |
| CCGCGGCTCGACCGTTGTGG+CGG | - | tig0034564:22855-22874 | Msa1453280:intergenic | 75.0% | |
| CCGCCACAACGGTCGAGCCG+CGG | + | tig0034564:22852-22871 | Msa1453280:CDS | 75.0% | |
| ACGCCGCGGCTCGACCGTTG+TGG | - | tig0034564:22858-22877 | Msa1453280:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0034564 | gene | 22608 | 27299 | 22608 | ID=Msa1453280;Name=Msa1453280 |
| tig0034564 | mRNA | 22608 | 27299 | 22608 | ID=Msa1453280-mRNA-1;Parent=Msa1453280;Name=Msa1453280-mRNA-1;_AED=0.02;_eAED=0.02;_QI=150|1|1|1|0.83|0.71|7|439|452 |
| tig0034564 | exon | 22608 | 23114 | 22608 | ID=Msa1453280-mRNA-1:exon:19064;Parent=Msa1453280-mRNA-1 |
| tig0034564 | exon | 24636 | 24848 | 24636 | ID=Msa1453280-mRNA-1:exon:19065;Parent=Msa1453280-mRNA-1 |
| tig0034564 | exon | 25154 | 25294 | 25154 | ID=Msa1453280-mRNA-1:exon:19066;Parent=Msa1453280-mRNA-1 |
| tig0034564 | exon | 25693 | 25812 | 25693 | ID=Msa1453280-mRNA-1:exon:19067;Parent=Msa1453280-mRNA-1 |
| tig0034564 | exon | 25907 | 25993 | 25907 | ID=Msa1453280-mRNA-1:exon:19068;Parent=Msa1453280-mRNA-1 |
| tig0034564 | exon | 26333 | 26779 | 26333 | ID=Msa1453280-mRNA-1:exon:19069;Parent=Msa1453280-mRNA-1 |
| tig0034564 | exon | 26867 | 27299 | 26867 | ID=Msa1453280-mRNA-1:exon:19070;Parent=Msa1453280-mRNA-1 |
| tig0034564 | five_prime_UTR | 22608 | 22757 | 22608 | ID=Msa1453280-mRNA-1:five_prime_utr;Parent=Msa1453280-mRNA-1 |
| tig0034564 | CDS | 22758 | 23114 | 22758 | ID=Msa1453280-mRNA-1:cds;Parent=Msa1453280-mRNA-1 |
| tig0034564 | CDS | 24636 | 24848 | 24636 | ID=Msa1453280-mRNA-1:cds;Parent=Msa1453280-mRNA-1 |
| tig0034564 | CDS | 25154 | 25294 | 25154 | ID=Msa1453280-mRNA-1:cds;Parent=Msa1453280-mRNA-1 |
| tig0034564 | CDS | 25693 | 25812 | 25693 | ID=Msa1453280-mRNA-1:cds;Parent=Msa1453280-mRNA-1 |
| tig0034564 | CDS | 25907 | 25993 | 25907 | ID=Msa1453280-mRNA-1:cds;Parent=Msa1453280-mRNA-1 |
| tig0034564 | CDS | 26333 | 26773 | 26333 | ID=Msa1453280-mRNA-1:cds;Parent=Msa1453280-mRNA-1 |
| tig0034564 | three_prime_UTR | 26774 | 26779 | 26774 | ID=Msa1453280-mRNA-1:three_prime_utr;Parent=Msa1453280-mRNA-1 |
| tig0034564 | three_prime_UTR | 26867 | 27299 | 26867 | ID=Msa1453280-mRNA-1:three_prime_utr;Parent=Msa1453280-mRNA-1 |
| Gene Sequence |
| Protein sequence |
