Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0828190 | XP_003597463.2 | 94.469 | 452 | 25 | 0 | 1 | 452 | 1 | 452 | 0.0 | 840 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0828190 | G7IUE9 | 94.469 | 452 | 25 | 0 | 1 | 452 | 1 | 452 | 0.0 | 840 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0035140 | Msa0828190 | 0.802971 | 4.355570e-49 | -8.615850e-47 |
| Msa0056180 | Msa0828190 | 0.813467 | 2.522151e-51 | -8.615850e-47 |
| Msa0067060 | Msa0828190 | 0.812653 | 3.803720e-51 | -8.615850e-47 |
| Msa0068150 | Msa0828190 | 0.806425 | 8.278969e-50 | -8.615850e-47 |
| Msa0112670 | Msa0828190 | 0.804791 | 1.823012e-49 | -8.615850e-47 |
| Msa0606100 | Msa0828190 | 0.829856 | 4.073330e-55 | -8.615850e-47 |
| Msa0615630 | Msa0828190 | 0.813522 | 2.452990e-51 | -8.615850e-47 |
| Msa0620500 | Msa0828190 | 0.807736 | 4.368347e-50 | -8.615850e-47 |
| Msa0621710 | Msa0828190 | 0.809383 | 1.944695e-50 | -8.615850e-47 |
| Msa0647050 | Msa0828190 | 0.825920 | 3.603792e-54 | -8.615850e-47 |
| Msa0698730 | Msa0828190 | 0.852146 | 5.588460e-61 | -8.615850e-47 |
| Msa0703600 | Msa0828190 | 0.811379 | 7.209078e-51 | -8.615850e-47 |
| Msa0709200 | Msa0828190 | 0.810409 | 1.169215e-50 | -8.615850e-47 |
| Msa0714790 | Msa0828190 | 0.808711 | 2.708635e-50 | -8.615850e-47 |
| Msa0735780 | Msa0828190 | 0.803368 | 3.605097e-49 | -8.615850e-47 |
| Msa0747740 | Msa0828190 | 0.805057 | 1.603822e-49 | -8.615850e-47 |
| Msa0756820 | Msa0828190 | 0.813192 | 2.898294e-51 | -8.615850e-47 |
| Msa0777750 | Msa0828190 | 0.805757 | 1.144234e-49 | -8.615850e-47 |
| Msa0821160 | Msa0828190 | 0.806484 | 8.042958e-50 | -8.615850e-47 |
| Msa0828190 | Msa0888790 | 0.806659 | 7.386807e-50 | -8.615850e-47 |
| Msa0828190 | Msa0924430 | 0.814700 | 1.347929e-51 | -8.615850e-47 |
| Msa0828190 | Msa0931590 | 0.802150 | 6.431833e-49 | -8.615850e-47 |
| Msa0828190 | Msa1008670 | 0.806631 | 7.491225e-50 | -8.615850e-47 |
| Msa0828190 | Msa1033920 | 0.824489 | 7.852413e-54 | -8.615850e-47 |
| Msa0828190 | Msa1035650 | 0.830786 | 2.413989e-55 | -8.615850e-47 |
| Msa0828190 | Msa1059020 | 0.803815 | 2.911041e-49 | -8.615850e-47 |
| Msa0828190 | Msa1060900 | 0.823686 | 1.211869e-53 | -8.615850e-47 |
| Msa0828190 | Msa1076020 | 0.801814 | 7.537989e-49 | -8.615850e-47 |
| Msa0828190 | Msa1078880 | 0.803499 | 3.385421e-49 | -8.615850e-47 |
| Msa0828190 | Msa1078970 | 0.814996 | 1.159135e-51 | -8.615850e-47 |
| Msa0828190 | Msa1081390 | 0.823267 | 1.518785e-53 | -8.615850e-47 |
| Msa0828190 | Msa1082200 | 0.807688 | 4.472859e-50 | -8.615850e-47 |
| Msa0828190 | Msa1116190 | 0.811402 | 7.128297e-51 | -8.615850e-47 |
| Msa0828190 | Msa1116220 | 0.827063 | 1.923499e-54 | -8.615850e-47 |
| Msa0828190 | Msa1116660 | 0.825865 | 3.711889e-54 | -8.615850e-47 |
| Msa0828190 | Msa1116740 | 0.804907 | 1.724323e-49 | -8.615850e-47 |
| Msa0828190 | Msa1127280 | 0.812104 | 5.013539e-51 | -8.615850e-47 |
| Msa0828190 | Msa1132530 | 0.815860 | 7.446541e-52 | -8.615850e-47 |
| Msa0828190 | Msa1139050 | 0.802411 | 5.683077e-49 | -8.615850e-47 |
| Msa0828190 | Msa1148630 | 0.818877 | 1.558235e-52 | -8.615850e-47 |
| Msa0828190 | Msa1162880 | 0.830287 | 3.197673e-55 | -8.615850e-47 |
| Msa0828190 | Msa1165480 | 0.804591 | 2.007005e-49 | -8.615850e-47 |
| Msa0828190 | Msa1214350 | 0.815875 | 7.388586e-52 | -8.615850e-47 |
| Msa0828190 | Msa1215980 | 0.808183 | 3.509352e-50 | -8.615850e-47 |
| Msa0828190 | Msa1226520 | 0.803339 | 3.655113e-49 | -8.615850e-47 |
| Msa0828190 | Msa1244240 | 0.813487 | 2.497384e-51 | -8.615850e-47 |
| Msa0828190 | Msa1254540 | 0.806356 | 8.558887e-50 | -8.615850e-47 |
| Msa0828190 | Msa1261050 | 0.817643 | 2.965052e-52 | -8.615850e-47 |
| Msa0828190 | Msa1263780 | 0.801201 | 1.006907e-48 | -8.615850e-47 |
| Msa0828190 | Msa1300460 | 0.800856 | 1.184419e-48 | -8.615850e-47 |
| Msa0828190 | Msa1305780 | 0.850432 | 1.705087e-60 | -8.615850e-47 |
| Msa0828190 | Msa1339170 | 0.833402 | 5.442845e-56 | -8.615850e-47 |
| Msa0828190 | Msa1343180 | 0.807646 | 4.566508e-50 | -8.615850e-47 |
| Msa0828190 | Msa1375350 | 0.808295 | 3.322623e-50 | -8.615850e-47 |
| Msa0828190 | Msa1426110 | 0.822274 | 2.585333e-53 | -8.615850e-47 |
| Msa0828190 | Msa1442260 | 0.837475 | 5.086801e-57 | -8.615850e-47 |
| Msa0828190 | Msa1446100 | 0.810271 | 1.252594e-50 | -8.615850e-47 |
| Msa0828190 | Msa1447170 | 0.800226 | 1.591517e-48 | -8.615850e-47 |
| Msa0828190 | Msa1453280 | 0.998497 | 7.596887e-267 | -8.615850e-47 |
| Msa0127680 | Msa0828190 | 0.838351 | 3.027421e-57 | -8.615850e-47 |
| Msa0159590 | Msa0828190 | 0.813410 | 2.595644e-51 | -8.615850e-47 |
| Msa0200050 | Msa0828190 | 0.801585 | 8.398937e-49 | -8.615850e-47 |
| Msa0209980 | Msa0828190 | 0.832775 | 7.799294e-56 | -8.615850e-47 |
| Msa0227370 | Msa0828190 | 0.963384 | 5.102728e-122 | -8.615850e-47 |
| Msa0367520 | Msa0828190 | 0.820531 | 6.528632e-53 | -8.615850e-47 |
| Msa0368860 | Msa0828190 | 0.800935 | 1.141177e-48 | -8.615850e-47 |
| Msa0389950 | Msa0828190 | 0.801852 | 7.406368e-49 | -8.615850e-47 |
| Msa0422050 | Msa0828190 | 0.807905 | 4.022627e-50 | -8.615850e-47 |
| Msa0265960 | Msa0828190 | 0.821353 | 4.224922e-53 | -8.615850e-47 |
| Msa0302830 | Msa0828190 | 0.930561 | 1.368482e-93 | -8.615850e-47 |
| Msa0343010 | Msa0828190 | 0.801286 | 9.673118e-49 | -8.615850e-47 |
| Msa0514580 | Msa0828190 | 0.804899 | 1.731235e-49 | -8.615850e-47 |
| Msa0550590 | Msa0828190 | 0.828373 | 9.322649e-55 | -8.615850e-47 |
| Msa0561560 | Msa0828190 | 0.816600 | 5.088003e-52 | -8.615850e-47 |
| Msa0563740 | Msa0828190 | 0.808334 | 3.258756e-50 | -8.615850e-47 |
| Msa0567170 | Msa0828190 | 0.803790 | 2.945828e-49 | -8.615850e-47 |
| Msa0571620 | Msa0828190 | 0.840008 | 1.126271e-57 | -8.615850e-47 |
| Msa0593400 | Msa0828190 | 0.808630 | 2.817613e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0828190 | MtrunA17_Chr2g0329061 | 94.469 | 452 | 25 | 0 | 1 | 452 | 1 | 452 | 0.0 | 840 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0828190 | AT5G12930.1 | 48.601 | 393 | 176 | 11 | 1 | 384 | 1 | 376 | 3.58e-109 | 330 |
Find 119 sgRNAs with CRISPR-Local
Find 259 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTTACAAAACCATATTTAA+TGG | 0.181372 | 5_4:-499250 | None:intergenic |
| TTTCTTATTGTTGCTGTTAT+TGG | 0.223426 | 5_4:+495191 | Msa0828190:CDS |
| TAGCCAGCTATTGCTGTCTT+TGG | 0.236408 | 5_4:+499275 | Msa0828190:three_prime_UTR |
| AAAGAAGGATTTGGTTGTTC+TGG | 0.252617 | 5_4:+498129 | Msa0828190:CDS |
| GTCAACATTCTACAGGTTTA+TGG | 0.253819 | 5_4:+499155 | Msa0828190:three_prime_UTR |
| AATTGTAGATTCAGAATTCT+TGG | 0.260695 | 5_4:-498686 | None:intergenic |
| TTCCTTCTGTAATGAATATA+TGG | 0.287784 | 5_4:+496993 | Msa0828190:CDS |
| AATGTCTGGCTTGTCGGATT+TGG | 0.295447 | 5_4:+497406 | Msa0828190:CDS |
| TAGAGAAGGGTGACTTATAT+TGG | 0.298699 | 5_4:-497361 | None:intergenic |
| CTGAATTAGAAGACATTATA+CGG | 0.313995 | 5_4:+498080 | Msa0828190:CDS |
| TTCAAAACTAAAGAAGGATT+TGG | 0.320274 | 5_4:+498120 | Msa0828190:CDS |
| AGCCAGCTATTGCTGTCTTT+GGG | 0.321958 | 5_4:+499276 | Msa0828190:three_prime_UTR |
| GCATCCAACTCTAAACAAAA+TGG | 0.348180 | 5_4:+494843 | Msa0828190:five_prime_UTR |
| TTGCAATTAGATGAAACATT+TGG | 0.367954 | 5_4:+496916 | Msa0828190:CDS |
| TTAAGAAATCCGTTGAGCTT+AGG | 0.369730 | 5_4:+495258 | Msa0828190:CDS |
| AGATAACCTCATTTATGATA+TGG | 0.377526 | 5_4:+498576 | Msa0828190:CDS |
| TGTGGCAGCTGAATTTCATT+TGG | 0.377686 | 5_4:-498547 | None:intergenic |
| TAAGAAGGAATTTCTTTAAG+AGG | 0.384480 | 5_4:-498790 | None:intergenic |
| TAAGAAATCCGTTGAGCTTA+GGG | 0.394216 | 5_4:+495259 | Msa0828190:CDS |
| CAGACATTCTTCTCTCCTCT+TGG | 0.398506 | 5_4:-497391 | None:intergenic |
| AAAATGAAGTCTCACTGGTT+TGG | 0.399324 | 5_4:-499388 | None:intergenic |
| CAAATAGTGTAGCAAACAAT+AGG | 0.402326 | 5_4:+499130 | Msa0828190:three_prime_UTR |
| AAGATGTTTATAATCTTAAG+AGG | 0.402964 | 5_4:+497881 | Msa0828190:CDS |
| TGCTGCTGCTCAGTCCAAAA+AGG | 0.410742 | 5_4:+495217 | Msa0828190:CDS |
| CCAAAATATGTAAGAACAAA+AGG | 0.411718 | 5_4:-499064 | None:intergenic |
| CTCAGAAGAGTTTAGCAGAT+TGG | 0.411871 | 5_4:-497941 | None:intergenic |
| AACAATTTCAAAACTAAAGA+AGG | 0.414561 | 5_4:+498114 | Msa0828190:CDS |
| CACATCTGCTGCTGATATCC+AGG | 0.416831 | 5_4:+497439 | Msa0828190:CDS |
| ACAATAAGAAACCGATGAAT+AGG | 0.418221 | 5_4:-495179 | None:intergenic |
| CAAGAGGAGAGAAGAATGTC+TGG | 0.419161 | 5_4:+497392 | Msa0828190:CDS |
| GTTCATTAGAGGTTATAAAT+CGG | 0.419698 | 5_4:-499431 | None:intergenic |
| TGCAGGTTATGCAGCTTTCA+AGG | 0.419818 | 5_4:+498494 | Msa0828190:intron |
| AATGAGCAGAGGTTCATTAG+AGG | 0.421638 | 5_4:-499442 | None:intergenic |
| TTCATTAGAGGTTATAAATC+GGG | 0.424201 | 5_4:-499430 | None:intergenic |
| CGTTAACAACCCGTCCTTGA+AGG | 0.436333 | 5_4:-495079 | None:intergenic |
| CTCTTGGTCTTCATTAGAGA+AGG | 0.441119 | 5_4:-497375 | None:intergenic |
| GGTAATGGTGAAGTAGCGTT+AGG | 0.448670 | 5_4:-494945 | None:intergenic |
| TTTGGTTGTTCTGGAACAAA+AGG | 0.449334 | 5_4:+498138 | Msa0828190:CDS |
| CGACGGCGGGAGAGAGTGAT+TGG | 0.450699 | 5_4:-494987 | None:intergenic |
| GACTAATTACTCATTAAGTA+TGG | 0.452612 | 5_4:+499331 | Msa0828190:three_prime_UTR |
| GTTGCCGTTAGAGTTGTTCA+TGG | 0.453633 | 5_4:-494922 | None:intergenic |
| TAATTGCAATTCTCCGTCCT+TGG | 0.457323 | 5_4:-496902 | None:intergenic |
| GTTGGTAGAATGACATCAAC+AGG | 0.459761 | 5_4:-498664 | None:intergenic |
| TGATGAACTTGCATTTGCTT+GGG | 0.460645 | 5_4:+495145 | Msa0828190:CDS |
| GAGAAGAATGTCTGGCTTGT+CGG | 0.462441 | 5_4:+497400 | Msa0828190:CDS |
| GCATTAGATTTCTGATAAGA+AGG | 0.463964 | 5_4:-498805 | None:intergenic |
| AGATCTTGTGCATTGTTGAC+AGG | 0.464468 | 5_4:-498640 | None:intergenic |
| TTATGCTCAGTTTAACAACT+TGG | 0.475767 | 5_4:+497849 | Msa0828190:intron |
| ATTTGGAATACTTGCAGAGA+AGG | 0.479701 | 5_4:-498530 | None:intergenic |
| AGTTTGTTGATTGCGGTTGT+TGG | 0.481813 | 5_4:+496953 | Msa0828190:CDS |
| GTGATGAACTTGCATTTGCT+TGG | 0.487161 | 5_4:+495144 | Msa0828190:CDS |
| ATGAGGTTATCTCTCATTTG+TGG | 0.489300 | 5_4:-498565 | None:intergenic |
| TTGCAATTCTCCGTCCTTGG+TGG | 0.492663 | 5_4:-496899 | None:intergenic |
| AAAACAATTGTCACCTCGTA+AGG | 0.497486 | 5_4:+498846 | Msa0828190:CDS |
| CGATGAAAATGAAGTCTCAC+TGG | 0.502795 | 5_4:-499393 | None:intergenic |
| AATGAGTAATTAGTCTATGA+AGG | 0.508399 | 5_4:-499323 | None:intergenic |
| CTGGATTAACCTTCAAGGAC+GGG | 0.510704 | 5_4:+495070 | Msa0828190:CDS |
| ATGGCCTGGATTAACCTTCA+AGG | 0.513528 | 5_4:+495065 | Msa0828190:CDS |
| ATAGGTAGTCAACATTCTAC+AGG | 0.514539 | 5_4:+499148 | Msa0828190:three_prime_UTR |
| ATCCCAAAGACAGCAATAGC+TGG | 0.514581 | 5_4:-499278 | None:intergenic |
| GGCGGAGAGACGACGACGGC+GGG | 0.516365 | 5_4:-495000 | None:intergenic |
| TTGGAGGACCTCATTTCCAC+TGG | 0.518085 | 5_4:-497342 | None:intergenic |
| AAATTATAGATAGTAGCAGC+AGG | 0.520555 | 5_4:+499209 | Msa0828190:three_prime_UTR |
| TGAAGGTTAATCCAGGCCAT+TGG | 0.520684 | 5_4:-495062 | None:intergenic |
| TGTCTCCTTGTAGGTTGCTG+TGG | 0.522837 | 5_4:+499020 | Msa0828190:intron |
| AGTAGAAGACGATCTCTCAA+TGG | 0.533967 | 5_4:+498880 | Msa0828190:CDS |
| CCGCCACAACGGTCGAGCCG+CGG | 0.535174 | 5_4:+495018 | Msa0828190:CDS |
| TACCATATATTCATTACAGA+AGG | 0.538276 | 5_4:-496995 | None:intergenic |
| GTGCGAGTGCAAATAAGAGA+TGG | 0.543346 | 5_4:+498911 | Msa0828190:CDS |
| GTAGATTCAGAATTCTTGGT+TGG | 0.551861 | 5_4:-498682 | None:intergenic |
| CGAATTAAGTTTGTTGATTG+CGG | 0.555870 | 5_4:+496946 | Msa0828190:CDS |
| AGAAGGGTGACTTATATTGG+AGG | 0.556146 | 5_4:-497358 | None:intergenic |
| AAGAGCCTCCAGTGGAAATG+AGG | 0.559249 | 5_4:+497334 | Msa0828190:CDS |
| TAAGAGGGACTGTGATGAGA+AGG | 0.561669 | 5_4:+497897 | Msa0828190:CDS |
| CCGTCCTTGAAGGTTAATCC+AGG | 0.562538 | 5_4:-495069 | None:intergenic |
| GGAATACTTGCAGAGAAGGA+TGG | 0.566765 | 5_4:-498526 | None:intergenic |
| GCTAGCGCGGCTAGAACTGT+TGG | 0.566998 | 5_4:+495110 | Msa0828190:CDS |
| ACTATCAGAATCAGAAGATG+AGG | 0.570063 | 5_4:-498614 | None:intergenic |
| CCGCGGCTCGACCGTTGTGG+CGG | 0.571817 | 5_4:-495018 | None:intergenic |
| AGCGCGGCTAGAACTGTTGG+TGG | 0.575091 | 5_4:+495113 | Msa0828190:CDS |
| GTAATGGTGAAGTAGCGTTA+GGG | 0.578358 | 5_4:-494944 | None:intergenic |
| TCTTGGTCTTCATTAGAGAA+GGG | 0.582381 | 5_4:-497374 | None:intergenic |
| ACGCCGCGGCTCGACCGTTG+TGG | 0.583747 | 5_4:-495021 | None:intergenic |
| GCGGCTAGAACTGTTGGTGG+TGG | 0.584041 | 5_4:+495116 | Msa0828190:CDS |
| CGGCGGGAGAGAGTGATTGG+TGG | 0.585218 | 5_4:-494984 | None:intergenic |
| ATCAGAAGATGAGGGGCTAG+TGG | 0.588405 | 5_4:-498605 | None:intergenic |
| CCTGGATTAACCTTCAAGGA+CGG | 0.589852 | 5_4:+495069 | Msa0828190:CDS |
| TGCTGTCCATATCATAAATG+AGG | 0.592185 | 5_4:-498582 | None:intergenic |
| TGCGAGTGCAAATAAGAGAT+GGG | 0.593088 | 5_4:+498912 | Msa0828190:CDS |
| CTATCAGAATCAGAAGATGA+GGG | 0.593200 | 5_4:-498613 | None:intergenic |
| TCAGCTGTTATCAAGCATGC+AGG | 0.594282 | 5_4:+496804 | Msa0828190:CDS |
| AATTTCTTTAAGAGGACTAG+CGG | 0.594712 | 5_4:-498782 | None:intergenic |
| TTCTGAGGTTGCTAATAGCA+AGG | 0.595094 | 5_4:+497957 | Msa0828190:CDS |
| TGATAGTATAGTAAATTGAG+AGG | 0.605111 | 5_4:+494778 | Msa0828190:five_prime_UTR |
| AAGAAGTTATCCACCAAGGA+CGG | 0.607937 | 5_4:+496889 | Msa0828190:CDS |
| AGATGTTTATAATCTTAAGA+GGG | 0.615181 | 5_4:+497882 | Msa0828190:CDS |
| ACTGGAGGCTCTTCTACTCA+AGG | 0.617031 | 5_4:-497324 | None:intergenic |
| ATTGGCTTCGAAAATGAGAT+CGG | 0.626620 | 5_4:-495044 | None:intergenic |
| GAGGACCTCATTTCCACTGG+AGG | 0.630298 | 5_4:-497339 | None:intergenic |
| TGTGGAATGTAGCAGAGTAC+AGG | 0.632552 | 5_4:+499038 | Msa0828190:three_prime_UTR |
| CTTCTCTAATGAAGACCAAG+AGG | 0.641341 | 5_4:+497376 | Msa0828190:CDS |
| TCGTCGTCTCTCCGCCACAA+CGG | 0.642258 | 5_4:+495007 | Msa0828190:CDS |
| GCTTCCATGAACAACTCTAA+CGG | 0.643301 | 5_4:+494918 | Msa0828190:exon |
| CAATCTGCTAAACTCTTCTG+AGG | 0.648603 | 5_4:+497942 | Msa0828190:CDS |
| ATAAGAAACCGATGAATAGG+CGG | 0.650348 | 5_4:-495176 | None:intergenic |
| TGGCGGAGAGACGACGACGG+CGG | 0.651162 | 5_4:-495001 | None:intergenic |
| TATACATACCCTAAGCTCAA+CGG | 0.651300 | 5_4:-495267 | None:intergenic |
| GGTGGAATTGAAACGAGACA+TGG | 0.665905 | 5_4:-494966 | None:intergenic |
| TTGAGTAGAAGAGCCTCCAG+TGG | 0.670401 | 5_4:+497326 | Msa0828190:CDS |
| ATTGAAACGAGACATGGTAA+TGG | 0.670705 | 5_4:-494960 | None:intergenic |
| AATTATAGATAGTAGCAGCA+GGG | 0.674088 | 5_4:+499210 | Msa0828190:three_prime_UTR |
| TATCAGAATCAGAAGATGAG+GGG | 0.677495 | 5_4:-498612 | None:intergenic |
| CTATAATGAGAAATGAGCAG+AGG | 0.685334 | 5_4:-499453 | None:intergenic |
| TAACGCTGATGAAGCTAGCG+CGG | 0.686137 | 5_4:+495097 | Msa0828190:CDS |
| TAGCGGATTGAAATTTCGAG+CGG | 0.704247 | 5_4:-498765 | None:intergenic |
| GAAAATGAGATCGGACGCCG+CGG | 0.709704 | 5_4:-495035 | None:intergenic |
| TATCAAGAAGTTATCCACCA+AGG | 0.731353 | 5_4:+496885 | Msa0828190:CDS |
| AATTAGAAGACATTATACGG+AGG | 0.745017 | 5_4:+498083 | Msa0828190:CDS |
| TTGTGGCGGAGAGACGACGA+CGG | 0.751092 | 5_4:-495004 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAATTATTTGAAAAGCATTT+TGG | + | chr5_4:495367-495386 | Msa0828190:intron | 15.0% |
| !!! | TTTTTAAATTAAGATTGTAG+AGG | - | chr5_4:495763-495782 | None:intergenic | 15.0% |
| !! | TACTAAATATTGTCAAATAA+TGG | + | chr5_4:497175-497194 | Msa0828190:intron | 15.0% |
| !! | TTATAAATACATCATATATC+AGG | + | chr5_4:497519-497538 | Msa0828190:intron | 15.0% |
| !! | TAAGAATTTAAAAGTCAAAT+CGG | - | chr5_4:498327-498346 | None:intergenic | 15.0% |
| !! | ATTTACAAAACCATATTTAA+TGG | - | chr5_4:499253-499272 | None:intergenic | 15.0% |
| !!! | ATTTGTTATAATATTGTTGC+TGG | + | chr5_4:495317-495336 | Msa0828190:intron | 20.0% |
| !!! | TTTGTTATAATATTGTTGCT+GGG | + | chr5_4:495318-495337 | Msa0828190:intron | 20.0% |
| !!! | TTCAAATTTTCATCAGAAAT+TGG | - | chr5_4:495345-495364 | None:intergenic | 20.0% |
| !! | TTGTTATGTTAATAGTCATT+TGG | + | chr5_4:495538-495557 | Msa0828190:intron | 20.0% |
| !! | TGTTATGTTAATAGTCATTT+GGG | + | chr5_4:495539-495558 | Msa0828190:intron | 20.0% |
| !!! | TGCTTTTGATTTTTTTATCA+TGG | + | chr5_4:496696-496715 | Msa0828190:intron | 20.0% |
| !! | TTGAATGTGTGTATTAATAT+TGG | + | chr5_4:496756-496775 | Msa0828190:intron | 20.0% |
| !!! | TTATTATATAGCTTTTCACT+TGG | + | chr5_4:497046-497065 | Msa0828190:intron | 20.0% |
| !! | AAAAACTTAGTGTTATATAG+CGG | + | chr5_4:497112-497131 | Msa0828190:intron | 20.0% |
| !! | AATTAGTAATTGCTTAATTG+TGG | + | chr5_4:497674-497693 | Msa0828190:intron | 20.0% |
| !! | ATAGAACTAATAAAAACACA+AGG | - | chr5_4:497790-497809 | None:intergenic | 20.0% |
| !! | AAGATGTTTATAATCTTAAG+AGG | + | chr5_4:497881-497900 | Msa0828190:CDS | 20.0% |
| !! | AGATGTTTATAATCTTAAGA+GGG | + | chr5_4:497882-497901 | Msa0828190:CDS | 20.0% |
| !! | AACAATTTCAAAACTAAAGA+AGG | + | chr5_4:498114-498133 | Msa0828190:CDS | 20.0% |
| !! | AAGAATTTAAAAGTCAAATC+GGG | - | chr5_4:498326-498345 | None:intergenic | 20.0% |
| !! | TGAAATGCTTCTTATATTAA+TGG | + | chr5_4:498455-498474 | Msa0828190:intron | 20.0% |
| !!! | TAAGTTTTAGCCATTAAATA+TGG | + | chr5_4:499240-499259 | Msa0828190:three_prime_UTR | 20.0% |
| ! | TGATAGTATAGTAAATTGAG+AGG | + | chr5_4:494778-494797 | Msa0828190:five_prime_UTR | 25.0% |
| !!! | TTTGAATTTTGAGTTTGAGA+GGG | - | chr5_4:494894-494913 | None:intergenic | 25.0% |
| !! | TTTCTTATTGTTGCTGTTAT+TGG | + | chr5_4:495191-495210 | Msa0828190:CDS | 25.0% |
| ! | TTGTTATAATATTGTTGCTG+GGG | + | chr5_4:495319-495338 | Msa0828190:intron | 25.0% |
| ! | GTTATGTTAATAGTCATTTG+GGG | + | chr5_4:495540-495559 | Msa0828190:intron | 25.0% |
| !! | TTTCACTAAAAAAGACCTTT+TGG | + | chr5_4:495622-495641 | Msa0828190:intron | 25.0% |
| ! | TTTCTTTATATCCGATTTAG+AGG | + | chr5_4:496311-496330 | Msa0828190:intron | 25.0% |
| !!! | GAATTCGAGATCTTTTAAAA+TGG | + | chr5_4:496352-496371 | Msa0828190:intron | 25.0% |
| ! | ATCTTCAATATGAGAAAACT+TGG | + | chr5_4:496562-496581 | Msa0828190:intron | 25.0% |
| ! | TTAATACACACATTCAAAGT+TGG | - | chr5_4:496753-496772 | None:intergenic | 25.0% |
| ! | TTGCAATTAGATGAAACATT+TGG | + | chr5_4:496916-496935 | Msa0828190:CDS | 25.0% |
| ! | TTCCTTCTGTAATGAATATA+TGG | + | chr5_4:496993-497012 | Msa0828190:CDS | 25.0% |
| ! | TACCATATATTCATTACAGA+AGG | - | chr5_4:496998-497017 | None:intergenic | 25.0% |
| ! | AACTCATATACTTACTGTAT+TGG | + | chr5_4:497021-497040 | Msa0828190:intron | 25.0% |
| ! | ACTCATATACTTACTGTATT+GGG | + | chr5_4:497022-497041 | Msa0828190:intron | 25.0% |
| ! | TTAGTACTAAATACGTATCA+TGG | - | chr5_4:497161-497180 | None:intergenic | 25.0% |
| ! | ATATTGTCAAATAATGGTAG+TGG | + | chr5_4:497181-497200 | Msa0828190:intron | 25.0% |
| ! | ATTGACATAGTTAAATGCAA+TGG | + | chr5_4:497704-497723 | Msa0828190:intron | 25.0% |
| !!! | TAATTTGTTTTACTCTCTTG+CGG | + | chr5_4:497746-497765 | Msa0828190:intron | 25.0% |
| ! | TTGTAGTGAAAATGATAAGT+GGG | - | chr5_4:498043-498062 | None:intergenic | 25.0% |
| ! | ATTGTAGTGAAAATGATAAG+TGG | - | chr5_4:498044-498063 | None:intergenic | 25.0% |
| ! | CTGAATTAGAAGACATTATA+CGG | + | chr5_4:498080-498099 | Msa0828190:CDS | 25.0% |
| ! | TTCAAAACTAAAGAAGGATT+TGG | + | chr5_4:498120-498139 | Msa0828190:CDS | 25.0% |
| !! | ACAAAAGGTACATATATACA+TGG | + | chr5_4:498153-498172 | Msa0828190:intron | 25.0% |
| ! | TACATGGTAGATATAAACAA+TGG | + | chr5_4:498169-498188 | Msa0828190:intron | 25.0% |
| ! | AGATAACCTCATTTATGATA+TGG | + | chr5_4:498576-498595 | Msa0828190:CDS | 25.0% |
| ! | AATTGTAGATTCAGAATTCT+TGG | - | chr5_4:498689-498708 | None:intergenic | 25.0% |
| ! | CAAAAATCTTAAATTCGTCA+GGG | + | chr5_4:498728-498747 | Msa0828190:CDS | 25.0% |
| ! | TAAGAAGGAATTTCTTTAAG+AGG | - | chr5_4:498793-498812 | None:intergenic | 25.0% |
| ! | CCAAAATATGTAAGAACAAA+AGG | - | chr5_4:499067-499086 | None:intergenic | 25.0% |
| !! | CCTTTTGTTCTTACATATTT+TGG | + | chr5_4:499064-499083 | Msa0828190:three_prime_UTR | 25.0% |
| !! | AATGAGTAATTAGTCTATGA+AGG | - | chr5_4:499326-499345 | None:intergenic | 25.0% |
| ! | GACTAATTACTCATTAAGTA+TGG | + | chr5_4:499331-499350 | Msa0828190:three_prime_UTR | 25.0% |
| ! | TTCATTAGAGGTTATAAATC+GGG | - | chr5_4:499433-499452 | None:intergenic | 25.0% |
| ! | GTTCATTAGAGGTTATAAAT+CGG | - | chr5_4:499434-499453 | None:intergenic | 25.0% |
| !!! | TATGCCATTTTGTTTAGAGT+TGG | - | chr5_4:494850-494869 | None:intergenic | 30.0% |
| !!! | GTTTGAATTTTGAGTTTGAG+AGG | - | chr5_4:494895-494914 | None:intergenic | 30.0% |
| ACAATAAGAAACCGATGAAT+AGG | - | chr5_4:495182-495201 | None:intergenic | 30.0% | |
| GCAAAATGTTCGTAAATTAG+TGG | + | chr5_4:495496-495515 | Msa0828190:intron | 30.0% | |
| !! | TAGTGGTTATGTTAGTTTGT+AGG | + | chr5_4:495513-495532 | Msa0828190:intron | 30.0% |
| !! | AGTGGTTATGTTAGTTTGTA+GGG | + | chr5_4:495514-495533 | Msa0828190:intron | 30.0% |
| TGTAGTGTTTGGCAAAATTA+GGG | - | chr5_4:495834-495853 | None:intergenic | 30.0% | |
| TTGTAGTGTTTGGCAAAATT+AGG | - | chr5_4:495835-495854 | None:intergenic | 30.0% | |
| CTGATTGAATTTGTAGTGTT+TGG | - | chr5_4:495845-495864 | None:intergenic | 30.0% | |
| TCAAATAGTAGCTTGAGTTA+AGG | - | chr5_4:496022-496041 | None:intergenic | 30.0% | |
| ACTATGACAACAACATTTCT+TGG | - | chr5_4:496070-496089 | None:intergenic | 30.0% | |
| ACTTATAGCATCCTCTAAAT+CGG | - | chr5_4:496325-496344 | None:intergenic | 30.0% | |
| TTCTGCACAGTTATAAATTG+CGG | - | chr5_4:496508-496527 | None:intergenic | 30.0% | |
| ! | TTGTTTCATCACTATTTTCC+AGG | + | chr5_4:496780-496799 | Msa0828190:intron | 30.0% |
| !! | CGAATTAAGTTTGTTGATTG+CGG | + | chr5_4:496946-496965 | Msa0828190:CDS | 30.0% |
| CTCATATACTTACTGTATTG+GGG | + | chr5_4:497023-497042 | Msa0828190:intron | 30.0% | |
| !! | AGTTTTTCAATAGACACGTT+AGG | - | chr5_4:497099-497118 | None:intergenic | 30.0% |
| ACACTGAAGAAAATAATACC+TGG | - | chr5_4:497460-497479 | None:intergenic | 30.0% | |
| AATAAAAACACAAGGAAACC+AGG | - | chr5_4:497782-497801 | None:intergenic | 30.0% | |
| TTATGCTCAGTTTAACAACT+TGG | + | chr5_4:497849-497868 | Msa0828190:intron | 30.0% | |
| AATTAGAAGACATTATACGG+AGG | + | chr5_4:498083-498102 | Msa0828190:CDS | 30.0% | |
| AATGCACCAATAGGTAATTT+AGG | + | chr5_4:498192-498211 | Msa0828190:intron | 30.0% | |
| TATGCACCTAAATTACCTAT+TGG | - | chr5_4:498201-498220 | None:intergenic | 30.0% | |
| !! | ATTGACTCACTTGTTATTGT+TGG | + | chr5_4:498226-498245 | Msa0828190:intron | 30.0% |
| !! | GACGAATTTAAGATTTTTGC+TGG | - | chr5_4:498727-498746 | None:intergenic | 30.0% |
| GCAAAAATCTTAAATTCGTC+AGG | + | chr5_4:498727-498746 | Msa0828190:CDS | 30.0% | |
| ! | AATTTCTTTAAGAGGACTAG+CGG | - | chr5_4:498785-498804 | None:intergenic | 30.0% |
| GCATTAGATTTCTGATAAGA+AGG | - | chr5_4:498808-498827 | None:intergenic | 30.0% | |
| CAAATAGTGTAGCAAACAAT+AGG | + | chr5_4:499130-499149 | Msa0828190:three_prime_UTR | 30.0% | |
| AAATTATAGATAGTAGCAGC+AGG | + | chr5_4:499209-499228 | Msa0828190:three_prime_UTR | 30.0% | |
| AATTATAGATAGTAGCAGCA+GGG | + | chr5_4:499210-499229 | Msa0828190:three_prime_UTR | 30.0% | |
| GCATCCAACTCTAAACAAAA+TGG | + | chr5_4:494843-494862 | Msa0828190:five_prime_UTR | 35.0% | |
| ATTGAAACGAGACATGGTAA+TGG | - | chr5_4:494963-494982 | None:intergenic | 35.0% | |
| ! | ATTGGCTTCGAAAATGAGAT+CGG | - | chr5_4:495047-495066 | None:intergenic | 35.0% |
| TGATGAACTTGCATTTGCTT+GGG | + | chr5_4:495145-495164 | Msa0828190:CDS | 35.0% | |
| ! | ATCTTTTTCCGCCTATTCAT+CGG | + | chr5_4:495168-495187 | Msa0828190:CDS | 35.0% |
| ATAAGAAACCGATGAATAGG+CGG | - | chr5_4:495179-495198 | None:intergenic | 35.0% | |
| ! | GAAAATCTCTCGATCCTTTT+TGG | - | chr5_4:495234-495253 | None:intergenic | 35.0% |
| TTAAGAAATCCGTTGAGCTT+AGG | + | chr5_4:495258-495277 | Msa0828190:CDS | 35.0% | |
| TAAGAAATCCGTTGAGCTTA+GGG | + | chr5_4:495259-495278 | Msa0828190:CDS | 35.0% | |
| TATACATACCCTAAGCTCAA+CGG | - | chr5_4:495270-495289 | None:intergenic | 35.0% | |
| GTAGTGTTTGGCAAAATTAG+GGG | - | chr5_4:495833-495852 | None:intergenic | 35.0% | |
| ! | AGCTAGCTTATAACTGATAG+CGG | - | chr5_4:495877-495896 | None:intergenic | 35.0% |
| !! | TTATAGCGGATAGCTGATAA+TGG | - | chr5_4:495896-495915 | None:intergenic | 35.0% |
| !!! | TTTTTTACCAAACAGAGCCT+TGG | + | chr5_4:495992-496011 | Msa0828190:intron | 35.0% |
| TTACAATCACCACGCAATTA+CGG | - | chr5_4:496174-496193 | None:intergenic | 35.0% | |
| ! | CAATGTGTATTGTTGGTGTT+GGG | - | chr5_4:496452-496471 | None:intergenic | 35.0% |
| ACAATGTGTATTGTTGGTGT+TGG | - | chr5_4:496453-496472 | None:intergenic | 35.0% | |
| CACAGTTATAAATTGCGGAT+GGG | - | chr5_4:496503-496522 | None:intergenic | 35.0% | |
| TATCAAGAAGTTATCCACCA+AGG | + | chr5_4:496885-496904 | Msa0828190:CDS | 35.0% | |
| !! | ACTCATTGACTTTGTTAGCA+GGG | + | chr5_4:497299-497318 | Msa0828190:intron | 35.0% |
| TAGAGAAGGGTGACTTATAT+TGG | - | chr5_4:497364-497383 | None:intergenic | 35.0% | |
| ! | TCTTGGTCTTCATTAGAGAA+GGG | - | chr5_4:497377-497396 | None:intergenic | 35.0% |
| GTGTCATCGTTGAATGATAT+TGG | + | chr5_4:497476-497495 | Msa0828190:intron | 35.0% | |
| GGTTATCTGTCAAATGATAC+AGG | + | chr5_4:497540-497559 | Msa0828190:intron | 35.0% | |
| ! | TCCATGGTCTTGACTTTAAT+TGG | + | chr5_4:497638-497657 | Msa0828190:intron | 35.0% |
| TCCAATTAAAGTCAAGACCA+TGG | - | chr5_4:497642-497661 | None:intergenic | 35.0% | |
| ! | ATTGGTCAGCTCTTTTATTG+TGG | - | chr5_4:497926-497945 | None:intergenic | 35.0% |
| ! | TGCATTTTATTCTCCAGAGT+TGG | + | chr5_4:497987-498006 | Msa0828190:intron | 35.0% |
| !! | ATGATAAGTGGGTTAGGAAA+GGG | - | chr5_4:498032-498051 | None:intergenic | 35.0% |
| !! | AATGATAAGTGGGTTAGGAA+AGG | - | chr5_4:498033-498052 | None:intergenic | 35.0% |
| ! | GTGAAAATGATAAGTGGGTT+AGG | - | chr5_4:498038-498057 | None:intergenic | 35.0% |
| ! | AAAGAAGGATTTGGTTGTTC+TGG | + | chr5_4:498129-498148 | Msa0828190:CDS | 35.0% |
| !! | TTTGGTTGTTCTGGAACAAA+AGG | + | chr5_4:498138-498157 | Msa0828190:CDS | 35.0% |
| AAACAATGGAATGCACCAAT+AGG | + | chr5_4:498183-498202 | Msa0828190:intron | 35.0% | |
| !! | ACCTGCAGTCAATTTTGAAA+GGG | - | chr5_4:498481-498500 | None:intergenic | 35.0% |
| ! | AACCTGCAGTCAATTTTGAA+AGG | - | chr5_4:498482-498501 | None:intergenic | 35.0% |
| ! | ATTTGGAATACTTGCAGAGA+AGG | - | chr5_4:498533-498552 | None:intergenic | 35.0% |
| ATGAGGTTATCTCTCATTTG+TGG | - | chr5_4:498568-498587 | None:intergenic | 35.0% | |
| TGCTGTCCATATCATAAATG+AGG | - | chr5_4:498585-498604 | None:intergenic | 35.0% | |
| TATCAGAATCAGAAGATGAG+GGG | - | chr5_4:498615-498634 | None:intergenic | 35.0% | |
| CTATCAGAATCAGAAGATGA+GGG | - | chr5_4:498616-498635 | None:intergenic | 35.0% | |
| ACTATCAGAATCAGAAGATG+AGG | - | chr5_4:498617-498636 | None:intergenic | 35.0% | |
| GTAGATTCAGAATTCTTGGT+TGG | - | chr5_4:498685-498704 | None:intergenic | 35.0% | |
| ! | TACGAGGTGACAATTGTTTT+TGG | - | chr5_4:498846-498865 | None:intergenic | 35.0% |
| AAAACAATTGTCACCTCGTA+AGG | + | chr5_4:498846-498865 | Msa0828190:CDS | 35.0% | |
| !!! | CTCTTTTTTAAGTCCTTACG+AGG | - | chr5_4:498862-498881 | None:intergenic | 35.0% |
| AGTAAGTCAGCTCAAAATTC+TGG | + | chr5_4:498945-498964 | Msa0828190:intron | 35.0% | |
| CACGAATAAGCATATGTACA+TGG | - | chr5_4:498996-499015 | None:intergenic | 35.0% | |
| ATAGGTAGTCAACATTCTAC+AGG | + | chr5_4:499148-499167 | Msa0828190:three_prime_UTR | 35.0% | |
| GTCAACATTCTACAGGTTTA+TGG | + | chr5_4:499155-499174 | Msa0828190:three_prime_UTR | 35.0% | |
| ! | AAAATGAAGTCTCACTGGTT+TGG | - | chr5_4:499391-499410 | None:intergenic | 35.0% |
| GCTTCCATGAACAACTCTAA+CGG | + | chr5_4:494918-494937 | Msa0828190:exon | 40.0% | |
| GTAATGGTGAAGTAGCGTTA+GGG | - | chr5_4:494947-494966 | None:intergenic | 40.0% | |
| ! | GATCTCATTTTCGAAGCCAA+TGG | + | chr5_4:495046-495065 | Msa0828190:CDS | 40.0% |
| GTGATGAACTTGCATTTGCT+TGG | + | chr5_4:495144-495163 | Msa0828190:CDS | 40.0% | |
| ! | ATAGTCATTTGGGGTCTGTT+TGG | + | chr5_4:495549-495568 | Msa0828190:intron | 40.0% |
| AGAAAGTGACGGTTACCAAA+AGG | - | chr5_4:495640-495659 | None:intergenic | 40.0% | |
| ATAAGCTCGTGAGAAAGTGA+CGG | - | chr5_4:495651-495670 | None:intergenic | 40.0% | |
| ! | GCTGATAAGCTAGCTTATAG+CGG | - | chr5_4:495910-495929 | None:intergenic | 40.0% |
| ! | GCTGATAAGCTAGCTTATAG+CGG | - | chr5_4:495910-495929 | None:intergenic | 40.0% |
| ATAGTAACCAATAGTCCGAG+TGG | + | chr5_4:496085-496104 | Msa0828190:intron | 40.0% | |
| ATTACGGAATGATGCAGTTG+CGG | - | chr5_4:496158-496177 | None:intergenic | 40.0% | |
| GCTGTGACAATGTGTATTGT+TGG | - | chr5_4:496459-496478 | None:intergenic | 40.0% | |
| ATAAATTGCGGATGGGATCA+CGG | - | chr5_4:496496-496515 | None:intergenic | 40.0% | |
| GCACAGTTATAAATTGCGGA+TGG | - | chr5_4:496504-496523 | None:intergenic | 40.0% | |
| TGGTTGAGCAAGTTTCTCAA+TGG | + | chr5_4:496582-496601 | Msa0828190:intron | 40.0% | |
| GGTTGAGCAAGTTTCTCAAT+GGG | + | chr5_4:496583-496602 | Msa0828190:intron | 40.0% | |
| AAGAAGTTATCCACCAAGGA+CGG | + | chr5_4:496889-496908 | Msa0828190:CDS | 40.0% | |
| TAATTGCAATTCTCCGTCCT+TGG | - | chr5_4:496905-496924 | None:intergenic | 40.0% | |
| !! | AGTTTGTTGATTGCGGTTGT+TGG | + | chr5_4:496953-496972 | Msa0828190:CDS | 40.0% |
| !!! | TATAGCTTTTCACTTGGTGC+TGG | + | chr5_4:497052-497071 | Msa0828190:intron | 40.0% |
| !!! | ATAGCTTTTCACTTGGTGCT+GGG | + | chr5_4:497053-497072 | Msa0828190:intron | 40.0% |
| !! | CACTCATTGACTTTGTTAGC+AGG | + | chr5_4:497298-497317 | Msa0828190:intron | 40.0% |
| AGAAGGGTGACTTATATTGG+AGG | - | chr5_4:497361-497380 | None:intergenic | 40.0% | |
| ! | CTCTTGGTCTTCATTAGAGA+AGG | - | chr5_4:497378-497397 | None:intergenic | 40.0% |
| CTTCTCTAATGAAGACCAAG+AGG | + | chr5_4:497376-497395 | Msa0828190:CDS | 40.0% | |
| CTCAGAAGAGTTTAGCAGAT+TGG | - | chr5_4:497944-497963 | None:intergenic | 40.0% | |
| CAATCTGCTAAACTCTTCTG+AGG | + | chr5_4:497942-497961 | Msa0828190:CDS | 40.0% | |
| !! | TTCTGAGGTTGCTAATAGCA+AGG | + | chr5_4:497957-497976 | Msa0828190:CDS | 40.0% |
| GAAGTTGCAATTTCCAACTC+TGG | - | chr5_4:498003-498022 | None:intergenic | 40.0% | |
| !! | TGATAAGTGGGTTAGGAAAG+GGG | - | chr5_4:498031-498050 | None:intergenic | 40.0% |
| TGTGGCAGCTGAATTTCATT+TGG | - | chr5_4:498550-498569 | None:intergenic | 40.0% | |
| AGATCTTGTGCATTGTTGAC+AGG | - | chr5_4:498643-498662 | None:intergenic | 40.0% | |
| ! | GTTGGTAGAATGACATCAAC+AGG | - | chr5_4:498667-498686 | None:intergenic | 40.0% |
| !! | TAGCGGATTGAAATTTCGAG+CGG | - | chr5_4:498768-498787 | None:intergenic | 40.0% |
| AGTAGAAGACGATCTCTCAA+TGG | + | chr5_4:498880-498899 | Msa0828190:CDS | 40.0% | |
| TGCGAGTGCAAATAAGAGAT+GGG | + | chr5_4:498912-498931 | Msa0828190:CDS | 40.0% | |
| CGATGAAAATGAAGTCTCAC+TGG | - | chr5_4:499396-499415 | None:intergenic | 40.0% | |
| AATGAGCAGAGGTTCATTAG+AGG | - | chr5_4:499445-499464 | None:intergenic | 40.0% | |
| GTTGCCGTTAGAGTTGTTCA+TGG | - | chr5_4:494925-494944 | None:intergenic | 45.0% | |
| ! | GGTAATGGTGAAGTAGCGTT+AGG | - | chr5_4:494948-494967 | None:intergenic | 45.0% |
| GGTGGAATTGAAACGAGACA+TGG | - | chr5_4:494969-494988 | None:intergenic | 45.0% | |
| TGAAGGTTAATCCAGGCCAT+TGG | - | chr5_4:495065-495084 | None:intergenic | 45.0% | |
| ATGGCCTGGATTAACCTTCA+AGG | + | chr5_4:495065-495084 | Msa0828190:CDS | 45.0% | |
| CCTGGATTAACCTTCAAGGA+CGG | + | chr5_4:495069-495088 | Msa0828190:CDS | 45.0% | |
| CTGGATTAACCTTCAAGGAC+GGG | + | chr5_4:495070-495089 | Msa0828190:CDS | 45.0% | |
| GCTTGAGTTAAGGAACACCA+AGG | - | chr5_4:496012-496031 | None:intergenic | 45.0% | |
| AACCAATAGTCCGAGTGGTA+AGG | + | chr5_4:496090-496109 | Msa0828190:intron | 45.0% | |
| TTCCTTACCACTCGGACTAT+TGG | - | chr5_4:496095-496114 | None:intergenic | 45.0% | |
| ! | GGTTTGAGTTCCTTACCACT+CGG | - | chr5_4:496103-496122 | None:intergenic | 45.0% |
| TGCATCATTCCGTAATTGCG+TGG | + | chr5_4:496162-496181 | Msa0828190:intron | 45.0% | |
| !! | TGAGGTGTTGCACGGATATT+AGG | - | chr5_4:496201-496220 | None:intergenic | 45.0% |
| !! | CACTACATTGAGGTGTTGCA+CGG | - | chr5_4:496209-496228 | None:intergenic | 45.0% |
| GTGCAACACCTCAATGTAGT+GGG | + | chr5_4:496208-496227 | Msa0828190:intron | 45.0% | |
| ACACATTGTCACAGCCACAA+TGG | + | chr5_4:496464-496483 | Msa0828190:intron | 45.0% | |
| CCACATCAACCACTTGCTTA+CGG | - | chr5_4:496533-496552 | None:intergenic | 45.0% | |
| ! | CGTAAGCAAGTGGTTGATGT+GGG | + | chr5_4:496531-496550 | Msa0828190:intron | 45.0% |
| ! | TGCTTGATAACAGCTGATCC+TGG | - | chr5_4:496801-496820 | None:intergenic | 45.0% |
| TCAGCTGTTATCAAGCATGC+AGG | + | chr5_4:496804-496823 | Msa0828190:CDS | 45.0% | |
| TGTTCCAGTGTCGTCATTTG+CGG | - | chr5_4:497260-497279 | None:intergenic | 45.0% | |
| CAGACATTCTTCTCTCCTCT+TGG | - | chr5_4:497394-497413 | None:intergenic | 45.0% | |
| CAAGAGGAGAGAAGAATGTC+TGG | + | chr5_4:497392-497411 | Msa0828190:CDS | 45.0% | |
| ! | GAGAAGAATGTCTGGCTTGT+CGG | + | chr5_4:497400-497419 | Msa0828190:CDS | 45.0% |
| ! | AATGTCTGGCTTGTCGGATT+TGG | + | chr5_4:497406-497425 | Msa0828190:CDS | 45.0% |
| TGTAGCCTGTTTGCATTCCA+TGG | + | chr5_4:497622-497641 | Msa0828190:intron | 45.0% | |
| CAAGACCATGGAATGCAAAC+AGG | - | chr5_4:497630-497649 | None:intergenic | 45.0% | |
| TAAGAGGGACTGTGATGAGA+AGG | + | chr5_4:497897-497916 | Msa0828190:CDS | 45.0% | |
| GCCCTTTCAAAATTGACTGC+AGG | + | chr5_4:498477-498496 | Msa0828190:intron | 45.0% | |
| TGCAGGTTATGCAGCTTTCA+AGG | + | chr5_4:498494-498513 | Msa0828190:intron | 45.0% | |
| GGAATACTTGCAGAGAAGGA+TGG | - | chr5_4:498529-498548 | None:intergenic | 45.0% | |
| GTGCGAGTGCAAATAAGAGA+TGG | + | chr5_4:498911-498930 | Msa0828190:CDS | 45.0% | |
| TCGTGTTCATGTCTCCTTGT+AGG | + | chr5_4:499011-499030 | Msa0828190:intron | 45.0% | |
| ACATTCCACAGCAACCTACA+AGG | - | chr5_4:499028-499047 | None:intergenic | 45.0% | |
| TGTGGAATGTAGCAGAGTAC+AGG | + | chr5_4:499038-499057 | Msa0828190:three_prime_UTR | 45.0% | |
| TAGCCAGCTATTGCTGTCTT+TGG | + | chr5_4:499275-499294 | Msa0828190:three_prime_UTR | 45.0% | |
| AGCCAGCTATTGCTGTCTTT+GGG | + | chr5_4:499276-499295 | Msa0828190:three_prime_UTR | 45.0% | |
| ATCCCAAAGACAGCAATAGC+TGG | - | chr5_4:499281-499300 | None:intergenic | 45.0% | |
| ! | CATTTTCGAAGCCAATGGCC+TGG | + | chr5_4:495051-495070 | Msa0828190:CDS | 50.0% |
| CCGTCCTTGAAGGTTAATCC+AGG | - | chr5_4:495072-495091 | None:intergenic | 50.0% | |
| CGTTAACAACCCGTCCTTGA+AGG | - | chr5_4:495082-495101 | None:intergenic | 50.0% | |
| TAACGCTGATGAAGCTAGCG+CGG | + | chr5_4:495097-495116 | Msa0828190:CDS | 50.0% | |
| TGCTGCTGCTCAGTCCAAAA+AGG | + | chr5_4:495217-495236 | Msa0828190:CDS | 50.0% | |
| TGGGGTCTGTTTGGTAAGAC+AGG | + | chr5_4:495558-495577 | Msa0828190:intron | 50.0% | |
| AGGAACACCAAGGCTCTGTT+TGG | - | chr5_4:496002-496021 | None:intergenic | 50.0% | |
| ACTGCAACTGTGCACTTGGT+AGG | - | chr5_4:496124-496143 | None:intergenic | 50.0% | |
| CACAACTGCAACTGTGCACT+TGG | - | chr5_4:496128-496147 | None:intergenic | 50.0% | |
| CGTGCAACACCTCAATGTAG+TGG | + | chr5_4:496207-496226 | Msa0828190:intron | 50.0% | |
| CCATTGCACCCACTACATTG+AGG | - | chr5_4:496219-496238 | None:intergenic | 50.0% | |
| !! | CCTCAATGTAGTGGGTGCAA+TGG | + | chr5_4:496216-496235 | Msa0828190:intron | 50.0% |
| GATCACGGATATGGCCATTG+TGG | - | chr5_4:496481-496500 | None:intergenic | 50.0% | |
| TGCAGAACACCGTAAGCAAG+TGG | + | chr5_4:496521-496540 | Msa0828190:intron | 50.0% | |
| ! | CCGTAAGCAAGTGGTTGATG+TGG | + | chr5_4:496530-496549 | Msa0828190:intron | 50.0% |
| TTGCAATTCTCCGTCCTTGG+TGG | - | chr5_4:496902-496921 | None:intergenic | 50.0% | |
| CTATCCGCAAATGACGACAC+TGG | + | chr5_4:497253-497272 | Msa0828190:intron | 50.0% | |
| ACTGGAGGCTCTTCTACTCA+AGG | - | chr5_4:497327-497346 | None:intergenic | 50.0% | |
| TTGAGTAGAAGAGCCTCCAG+TGG | + | chr5_4:497326-497345 | Msa0828190:CDS | 50.0% | |
| AAGAGCCTCCAGTGGAAATG+AGG | + | chr5_4:497334-497353 | Msa0828190:CDS | 50.0% | |
| TTGGAGGACCTCATTTCCAC+TGG | - | chr5_4:497345-497364 | None:intergenic | 50.0% | |
| CACATCTGCTGCTGATATCC+AGG | + | chr5_4:497439-497458 | Msa0828190:CDS | 50.0% | |
| ! | TCTTGCGGTGCTTCTTTTCC+TGG | + | chr5_4:497761-497780 | Msa0828190:intron | 50.0% |
| ATCAGAAGATGAGGGGCTAG+TGG | - | chr5_4:498608-498627 | None:intergenic | 50.0% | |
| TGTCTCCTTGTAGGTTGCTG+TGG | + | chr5_4:499020-499039 | Msa0828190:intron | 50.0% | |
| GAAAATGAGATCGGACGCCG+CGG | - | chr5_4:495038-495057 | None:intergenic | 55.0% | |
| GCAATGGACGCATTGCGCAT+CGG | + | chr5_4:496232-496251 | Msa0828190:intron | 55.0% | |
| ! | CATTGCGCATCGGTCGCATT+AGG | + | chr5_4:496242-496261 | Msa0828190:intron | 55.0% |
| TGCGGATGGGATCACGGATA+TGG | - | chr5_4:496490-496509 | None:intergenic | 55.0% | |
| GAGGACCTCATTTCCACTGG+AGG | - | chr5_4:497342-497361 | None:intergenic | 55.0% | |
| ! | TTGTGGCGGAGAGACGACGA+CGG | - | chr5_4:495007-495026 | None:intergenic | 60.0% |
| TCGTCGTCTCTCCGCCACAA+CGG | + | chr5_4:495007-495026 | Msa0828190:CDS | 60.0% | |
| GCTAGCGCGGCTAGAACTGT+TGG | + | chr5_4:495110-495129 | Msa0828190:CDS | 60.0% | |
| AGCGCGGCTAGAACTGTTGG+TGG | + | chr5_4:495113-495132 | Msa0828190:CDS | 60.0% | |
| ! | GCGGCTAGAACTGTTGGTGG+TGG | + | chr5_4:495116-495135 | Msa0828190:CDS | 60.0% |
| ! | GCATCGGTCGCATTAGGCTG+TGG | + | chr5_4:496248-496267 | Msa0828190:intron | 60.0% |
| CGGCGGGAGAGAGTGATTGG+TGG | - | chr5_4:494987-495006 | None:intergenic | 65.0% | |
| CGACGGCGGGAGAGAGTGAT+TGG | - | chr5_4:494990-495009 | None:intergenic | 65.0% | |
| TGGCGGAGAGACGACGACGG+CGG | - | chr5_4:495004-495023 | None:intergenic | 70.0% | |
| GGCGGAGAGACGACGACGGC+GGG | - | chr5_4:495003-495022 | None:intergenic | 75.0% | |
| CCGCGGCTCGACCGTTGTGG+CGG | - | chr5_4:495021-495040 | None:intergenic | 75.0% | |
| CCGCCACAACGGTCGAGCCG+CGG | + | chr5_4:495018-495037 | Msa0828190:CDS | 75.0% | |
| ACGCCGCGGCTCGACCGTTG+TGG | - | chr5_4:495024-495043 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 494774 | 499465 | 494774 | ID=Msa0828190;Name=Msa0828190 |
| chr5_4 | mRNA | 494774 | 499465 | 494774 | ID=Msa0828190-mRNA-1;Parent=Msa0828190;Name=Msa0828190-mRNA-1;_AED=0.02;_eAED=0.02;_QI=150|1|1|1|0.83|0.71|7|439|452 |
| chr5_4 | exon | 494774 | 495280 | 494774 | ID=Msa0828190-mRNA-1:exon:69;Parent=Msa0828190-mRNA-1 |
| chr5_4 | exon | 496802 | 497014 | 496802 | ID=Msa0828190-mRNA-1:exon:70;Parent=Msa0828190-mRNA-1 |
| chr5_4 | exon | 497320 | 497460 | 497320 | ID=Msa0828190-mRNA-1:exon:71;Parent=Msa0828190-mRNA-1 |
| chr5_4 | exon | 497859 | 497978 | 497859 | ID=Msa0828190-mRNA-1:exon:72;Parent=Msa0828190-mRNA-1 |
| chr5_4 | exon | 498073 | 498159 | 498073 | ID=Msa0828190-mRNA-1:exon:73;Parent=Msa0828190-mRNA-1 |
| chr5_4 | exon | 498499 | 498945 | 498499 | ID=Msa0828190-mRNA-1:exon:74;Parent=Msa0828190-mRNA-1 |
| chr5_4 | exon | 499033 | 499465 | 499033 | ID=Msa0828190-mRNA-1:exon:75;Parent=Msa0828190-mRNA-1 |
| chr5_4 | five_prime_UTR | 494774 | 494923 | 494774 | ID=Msa0828190-mRNA-1:five_prime_utr;Parent=Msa0828190-mRNA-1 |
| chr5_4 | CDS | 494924 | 495280 | 494924 | ID=Msa0828190-mRNA-1:cds;Parent=Msa0828190-mRNA-1 |
| chr5_4 | CDS | 496802 | 497014 | 496802 | ID=Msa0828190-mRNA-1:cds;Parent=Msa0828190-mRNA-1 |
| chr5_4 | CDS | 497320 | 497460 | 497320 | ID=Msa0828190-mRNA-1:cds;Parent=Msa0828190-mRNA-1 |
| chr5_4 | CDS | 497859 | 497978 | 497859 | ID=Msa0828190-mRNA-1:cds;Parent=Msa0828190-mRNA-1 |
| chr5_4 | CDS | 498073 | 498159 | 498073 | ID=Msa0828190-mRNA-1:cds;Parent=Msa0828190-mRNA-1 |
| chr5_4 | CDS | 498499 | 498939 | 498499 | ID=Msa0828190-mRNA-1:cds;Parent=Msa0828190-mRNA-1 |
| chr5_4 | three_prime_UTR | 498940 | 498945 | 498940 | ID=Msa0828190-mRNA-1:three_prime_utr;Parent=Msa0828190-mRNA-1 |
| chr5_4 | three_prime_UTR | 499033 | 499465 | 499033 | ID=Msa0828190-mRNA-1:three_prime_utr;Parent=Msa0828190-mRNA-1 |
| Gene Sequence |
| Protein sequence |
