AlfalfaGEDB | Msa0278070

M. sativa cultivar zhongmu-4 / Msa0278070

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0278070	XP_003594398.1	94.079	304	15	2	1	303	25	326	0.0	574

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0092410	Msa0278070	0.801911	7.200661e-49	-8.615850e-47
Msa0138020	Msa0278070	0.804955	1.684709e-49	-8.615850e-47
Msa0152560	Msa0278070	0.811511	6.749148e-51	-8.615850e-47
Msa0160960	Msa0278070	0.815399	9.430610e-52	-8.615850e-47
Msa0187310	Msa0278070	0.801523	8.650814e-49	-8.615850e-47
Msa0218370	Msa0278070	0.811191	7.920319e-51	-8.615850e-47
Msa0240270	Msa0278070	0.820166	7.919462e-53	-8.615850e-47
Msa0269560	Msa0278070	0.801872	7.335257e-49	-8.615850e-47
Msa0271550	Msa0278070	0.803846	2.868368e-49	-8.615850e-47
Msa0278070	Msa0278580	0.813723	2.215039e-51	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0278070	MtrunA17_Chr2g0291191	94.079	304	15	2	1	303	25	326	0.0	574

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 58 sgRNAs with CRISPR-Local

Find 164 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACAAGAATGCTTGAGAA+GGG	0.588771	2_3:-10966423	Msa0278070:CDS
ACAACATTAGCTGGAATACA+AGG	0.535364	2_3:-10967114	Msa0278070:CDS
ACAAGAATAGGTCCAAAAGT+TGG	0.549690	2_3:-10967068	Msa0278070:CDS
ACATTAGCTGGAATACAAGG+AGG	0.676350	2_3:-10967111	Msa0278070:CDS
ACGATATTGTTAATAGAATT+TGG	0.155822	2_3:-10966921	Msa0278070:CDS
AGAGAATGGCTTCCTGCAGA+TGG	0.557742	2_3:-10966318	Msa0278070:CDS
AGAGAGTCAACAATATGCTC+AGG	0.550343	2_3:+10967039	None:intergenic
AGATCAATGAGAAAAGCTAA+TGG	0.434064	2_3:-10967315	None:intergenic
AGCAAGGTACTGGTCACTAG+TGG	0.582012	2_3:+10967263	None:intergenic
AGCTAATGGGATTCCATTGT+TGG	0.374423	2_3:-10967301	Msa0278070:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATGATTAGATCTTCCAACAA+TGG	+	chr2_3:10966128-10966147	None:intergenic	30.0%
TCAATAACTTCAGAACTTTC+AGG	+	chr2_3:10966260-10966279	None:intergenic	30.0%
TTGAGAATGATCACAAGAAT+AGG	-	chr2_3:10966333-10966352	Msa0278070:CDS	30.0%
TTGAGATCTAAGAGTGATTT+AGG	-	chr2_3:10966437-10966456	Msa0278070:CDS	30.0%
CTAAGAGTGATTTAGGTAAT+AGG	-	chr2_3:10966444-10966463	Msa0278070:CDS	30.0%
TGATGTCTCAGTAATCAAAA+TGG	-	chr2_3:10966568-10966587	Msa0278070:intron	30.0%
AATGAGTATAACCGTGTTTA+TGG	-	chr2_3:10966682-10966701	Msa0278070:intron	30.0%
TTCATACCTTGAAGTTAACA+AGG	-	chr2_3:10966727-10966746	Msa0278070:intron	30.0%
TAATCTAACTCATCATACTC+AGG	-	chr2_3:10966896-10966915	Msa0278070:CDS	30.0%
TAAAACAAGAATGCTTGAGA+AGG	-	chr2_3:10966989-10967008	Msa0278070:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_3	gene	10966104	10967331	10966104	ID=Msa0278070;Name=Msa0278070
chr2_3	mRNA	10966104	10967331	10966104	ID=Msa0278070-mRNA-1;Parent=Msa0278070;Name=Msa0278070-mRNA-1;_AED=0.20;_eAED=0.20;_QI=0\|1\|0\|1\|1\|1\|2\|0\|304
chr2_3	exon	10966831	10967331	10966831	ID=Msa0278070-mRNA-1:exon:4860;Parent=Msa0278070-mRNA-1
chr2_3	exon	10966104	10966517	10966104	ID=Msa0278070-mRNA-1:exon:4859;Parent=Msa0278070-mRNA-1
chr2_3	CDS	10966831	10967331	10966831	ID=Msa0278070-mRNA-1:cds;Parent=Msa0278070-mRNA-1
chr2_3	CDS	10966104	10966517	10966104	ID=Msa0278070-mRNA-1:cds;Parent=Msa0278070-mRNA-1

Gene Sequence

>Msa0278070

ATGAGAAAAGCTAATGGGATTCCATTGTTGGAAGATCTAATCATCTCCACTAGTGACCAGTACCTTGCTCTTGTCTGCACAGCAAACAAAAAATCCAACAAACAGCATTCTAAGAGCTTAAGTTCCAACACCACTTCAAAACTGGCTATTGAACCTGAAAGTTCTGAAGTTATTGATGAAAAGTTGGAACCATCAACAACATTAGCTGGAATACAAGGAGGGAAAGAATTTGAGAATGATCACAAGAATAGGTCCAAAAGTTGGCATTTTCCTGAGCATATTGTTGACTCTCTTAGTCAGGAGAATCTATCTGCTATTGAAGATAAAGATGAGTTGAGATCTAAGAGTGATTTAGGTAATAGGAGTTTTCACACAGTTGAGGAATATGACGATATTGTTAATAGAATTTGGTTGAATAAGTCACAAATTGATCAACAAAGTGAGTTTAATAATGAAGATGAAGATGATGTCTCAGTAATCAAAATGGACCTTCAGGATCAGGATAAAGATTCTTCCATCAAGAAAATGCAACCAGTGGGCTTAAACAAGAATGAGGAGAGGGTTCCAAGTCATAAAACAAGAATGCTTGAGAAGGGAAATAAGAGAAAGGCCATAGCAAATAGACTAGAATCCCTTAGAGTTCCATCAAATGTAGAATCTCCATCCATTGATAGTCTTAGAGAATGGCTTCCTGCAGATGGAATATACTCTCCTGGATCTTATGTCACACCAAAATTTGGAAGCTATTCTTCAATGAACATTAGGAATGCAAATGAATCTTGTGAGGATTCTATATTTAGCCCAGAGTTGGTATCTGCCTTTGAACAGTGTATGCAAAAGCTTGAAGCAGAGGAAGAAAACATTCTGAAACAAATTCTAGAGAACGTGGAAGAAGAAATTGATGAAGGAAAGTAG

Protein sequence

>Msa0278070

MRKANGIPLLEDLIISTSDQYLALVCTANKKSNKQHSKSLSSNTTSKLAIEPESSEVIDEKLEPSTTLAGIQGGKEFENDHKNRSKSWHFPEHIVDSLSQENLSAIEDKDELRSKSDLGNRSFHTVEEYDDIVNRIWLNKSQIDQQSEFNNEDEDDVSVIKMDLQDQDKDSSIKKMQPVGLNKNEERVPSHKTRMLEKGNKRKAIANRLESLRVPSNVESPSIDSLREWLPADGIYSPGSYVTPKFGSYSSMNIRNANESCEDSIFSPELVSAFEQCMQKLEAEEENILKQILENVEEEIDEGK*