Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0278070 | XP_003594398.1 | 94.079 | 304 | 15 | 2 | 1 | 303 | 25 | 326 | 0.0 | 574 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0092410 | Msa0278070 | 0.801911 | 7.200661e-49 | -8.615850e-47 |
| Msa0138020 | Msa0278070 | 0.804955 | 1.684709e-49 | -8.615850e-47 |
| Msa0152560 | Msa0278070 | 0.811511 | 6.749148e-51 | -8.615850e-47 |
| Msa0160960 | Msa0278070 | 0.815399 | 9.430610e-52 | -8.615850e-47 |
| Msa0187310 | Msa0278070 | 0.801523 | 8.650814e-49 | -8.615850e-47 |
| Msa0218370 | Msa0278070 | 0.811191 | 7.920319e-51 | -8.615850e-47 |
| Msa0240270 | Msa0278070 | 0.820166 | 7.919462e-53 | -8.615850e-47 |
| Msa0269560 | Msa0278070 | 0.801872 | 7.335257e-49 | -8.615850e-47 |
| Msa0271550 | Msa0278070 | 0.803846 | 2.868368e-49 | -8.615850e-47 |
| Msa0278070 | Msa0278580 | 0.813723 | 2.215039e-51 | -8.615850e-47 |
| Msa0278070 | Msa0307310 | 0.810673 | 1.025690e-50 | -8.615850e-47 |
| Msa0278070 | Msa0317960 | 0.802208 | 6.256666e-49 | -8.615850e-47 |
| Msa0278070 | Msa0364790 | 0.812582 | 3.942825e-51 | -8.615850e-47 |
| Msa0278070 | Msa0518170 | 0.801427 | 9.052009e-49 | -8.615850e-47 |
| Msa0278070 | Msa0534870 | 0.800919 | 1.149721e-48 | -8.615850e-47 |
| Msa0278070 | Msa0569780 | 0.813123 | 3.001637e-51 | -8.615850e-47 |
| Msa0278070 | Msa0573890 | 0.816606 | 5.072318e-52 | -8.615850e-47 |
| Msa0278070 | Msa0684320 | 0.820656 | 6.111167e-53 | -8.615850e-47 |
| Msa0278070 | Msa0701100 | 0.800024 | 1.750007e-48 | -8.615850e-47 |
| Msa0278070 | Msa0705990 | 0.802537 | 5.352637e-49 | -8.615850e-47 |
| Msa0278070 | Msa0741070 | 0.803396 | 3.556741e-49 | -8.615850e-47 |
| Msa0278070 | Msa0750810 | 0.822582 | 2.192728e-53 | -8.615850e-47 |
| Msa0278070 | Msa0795340 | 0.810587 | 1.070150e-50 | -8.615850e-47 |
| Msa0278070 | Msa0823440 | 0.802705 | 4.942024e-49 | -8.615850e-47 |
| Msa0278070 | Msa0954840 | 0.807257 | 5.521852e-50 | -8.615850e-47 |
| Msa0278070 | Msa1089460 | 0.806235 | 9.078711e-50 | -8.615850e-47 |
| Msa0278070 | Msa1107200 | 0.805375 | 1.376307e-49 | -8.615850e-47 |
| Msa0278070 | Msa1214170 | 0.827553 | 1.468467e-54 | -8.615850e-47 |
| Msa0278070 | Msa1236440 | 0.814137 | 1.795314e-51 | -8.615850e-47 |
| Msa0278070 | Msa1246700 | 0.804204 | 2.416370e-49 | -8.615850e-47 |
| Msa0278070 | Msa1260680 | 0.801705 | 7.936748e-49 | -8.615850e-47 |
| Msa0278070 | Msa1277670 | 0.806802 | 6.892500e-50 | -8.615850e-47 |
| Msa0278070 | Msa1291450 | 0.814318 | 1.637585e-51 | -8.615850e-47 |
| Msa0278070 | Msa1307180 | 0.800522 | 1.385293e-48 | -8.615850e-47 |
| Msa0278070 | Msa1353890 | 0.800560 | 1.361321e-48 | -8.615850e-47 |
| Msa0278070 | Msa1360020 | 0.831985 | 1.223725e-55 | -8.615850e-47 |
| Msa0278070 | Msa1428780 | 0.810968 | 8.854014e-51 | -8.615850e-47 |
| Msa0278070 | Msa1430550 | 0.806842 | 6.758250e-50 | -8.615850e-47 |
| Msa0278070 | Msa1462360 | 0.807134 | 5.862838e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0278070 | MtrunA17_Chr2g0291191 | 94.079 | 304 | 15 | 2 | 1 | 303 | 25 | 326 | 0.0 | 574 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 58 sgRNAs with CRISPR-Local
Find 164 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACGATATTGTTAATAGAATT+TGG | 0.155822 | 2_3:-10966921 | Msa0278070:CDS |
| TCTTATGTCACACCAAAATT+TGG | 0.165310 | 2_3:-10966279 | Msa0278070:CDS |
| GAAGAATAGCTTCCAAATTT+TGG | 0.185043 | 2_3:+10966267 | None:intergenic |
| TCAATAACTTCAGAACTTTC+AGG | 0.215550 | 2_3:+10967156 | None:intergenic |
| TTGAGATCTAAGAGTGATTT+AGG | 0.220206 | 2_3:-10966976 | Msa0278070:CDS |
| CTAAGAGTGATTTAGGTAAT+AGG | 0.283769 | 2_3:-10966969 | Msa0278070:CDS |
| CTACATTTGATGGAACTCTA+AGG | 0.296653 | 2_3:+10966364 | None:intergenic |
| GCTATTCTTCAATGAACATT+AGG | 0.319389 | 2_3:-10966254 | Msa0278070:CDS |
| CTCAGGAAAATGCCAACTTT+TGG | 0.338664 | 2_3:+10967056 | None:intergenic |
| GCTCTTAGAATGCTGTTTGT+TGG | 0.357566 | 2_3:+10967215 | None:intergenic |
| TGATGTCTCAGTAATCAAAA+TGG | 0.367230 | 2_3:-10966845 | Msa0278070:CDS |
| AGCTAATGGGATTCCATTGT+TGG | 0.374423 | 2_3:-10967301 | Msa0278070:CDS |
| GATGGAGATTCTACATTTGA+TGG | 0.375858 | 2_3:+10966354 | None:intergenic |
| ATTCCAGCTAATGTTGTTGA+TGG | 0.381283 | 2_3:+10967120 | None:intergenic |
| TTCCAACACCACTTCAAAAC+TGG | 0.382459 | 2_3:-10967187 | Msa0278070:CDS |
| CAAAATGGACCTTCAGGATC+AGG | 0.416806 | 2_3:-10966830 | Msa0278070:intron |
| TGAAGTTATTGATGAAAAGT+TGG | 0.428046 | 2_3:-10967145 | Msa0278070:CDS |
| TCATTCTTGTTTAAGCCCAC+TGG | 0.428904 | 2_3:+10966465 | None:intergenic |
| AGATCAATGAGAAAAGCTAA+TGG | 0.434064 | 2_3:-10967315 | None:intergenic |
| AGTAATCAAAATGGACCTTC+AGG | 0.437282 | 2_3:-10966836 | Msa0278070:CDS |
| GATCAATGAGAAAAGCTAAT+GGG | 0.443606 | 2_3:-10967314 | None:intergenic |
| CCATTCTCTAAGACTATCAA+TGG | 0.446678 | 2_3:+10966332 | None:intergenic |
| TATTGTTGACTCTCTTAGTC+AGG | 0.449290 | 2_3:-10967031 | Msa0278070:CDS |
| TTGAGAATGATCACAAGAAT+AGG | 0.452576 | 2_3:-10967080 | Msa0278070:CDS |
| GAACCATCAACAACATTAGC+TGG | 0.455433 | 2_3:-10967123 | Msa0278070:CDS |
| TGCAGACAAGAGCAAGGTAC+TGG | 0.503899 | 2_3:+10967253 | None:intergenic |
| CCATTGATAGTCTTAGAGAA+TGG | 0.509108 | 2_3:-10966332 | Msa0278070:CDS |
| TTCTATATTTAGCCCAGAGT+TGG | 0.513249 | 2_3:-10966208 | Msa0278070:CDS |
| TACATTTGATGGAACTCTAA+GGG | 0.514922 | 2_3:+10966365 | None:intergenic |
| GGATTCTAGTCTATTTGCTA+TGG | 0.519544 | 2_3:+10966386 | None:intergenic |
| TCAAAGGCAGATACCAACTC+TGG | 0.523872 | 2_3:+10966195 | None:intergenic |
| GCAGATGGAATATACTCTCC+TGG | 0.523914 | 2_3:-10966303 | Msa0278070:CDS |
| GGAGAGTATATTCCATCTGC+AGG | 0.527681 | 2_3:+10966306 | None:intergenic |
| ACAACATTAGCTGGAATACA+AGG | 0.535364 | 2_3:-10967114 | Msa0278070:CDS |
| GTGGAAGAAGAAATTGATGA+AGG | 0.535857 | 2_3:-10966111 | Msa0278070:CDS |
| TTTGGTGTGACATAAGATCC+AGG | 0.546990 | 2_3:+10966285 | None:intergenic |
| ACAAGAATAGGTCCAAAAGT+TGG | 0.549690 | 2_3:-10967068 | Msa0278070:CDS |
| TATGCAAAAGCTTGAAGCAG+AGG | 0.550122 | 2_3:-10966166 | Msa0278070:CDS |
| AGAGAGTCAACAATATGCTC+AGG | 0.550343 | 2_3:+10967039 | None:intergenic |
| TAAAACAAGAATGCTTGAGA+AGG | 0.557479 | 2_3:-10966424 | Msa0278070:CDS |
| AGAGAATGGCTTCCTGCAGA+TGG | 0.557742 | 2_3:-10966318 | Msa0278070:CDS |
| ATGATTAGATCTTCCAACAA+TGG | 0.577290 | 2_3:+10967288 | None:intergenic |
| AGCAAGGTACTGGTCACTAG+TGG | 0.582012 | 2_3:+10967263 | None:intergenic |
| TCTCTAAGACTATCAATGGA+TGG | 0.587245 | 2_3:+10966336 | None:intergenic |
| AAAACAAGAATGCTTGAGAA+GGG | 0.588771 | 2_3:-10966423 | Msa0278070:CDS |
| TGAGAAGGGAAATAAGAGAA+AGG | 0.591498 | 2_3:-10966409 | Msa0278070:CDS |
| CAAAGGCAGATACCAACTCT+GGG | 0.607677 | 2_3:+10966196 | None:intergenic |
| ATCAAGAAAATGCAACCAGT+GGG | 0.620393 | 2_3:-10966480 | Msa0278070:CDS |
| CTTAAACAAGAATGAGGAGA+GGG | 0.621377 | 2_3:-10966457 | Msa0278070:CDS |
| AGTGGGCTTAAACAAGAATG+AGG | 0.624260 | 2_3:-10966463 | Msa0278070:CDS |
| GAATGCAAATGAATCTTGTG+AGG | 0.631939 | 2_3:-10966232 | Msa0278070:CDS |
| CATCAAGAAAATGCAACCAG+TGG | 0.637452 | 2_3:-10966481 | Msa0278070:CDS |
| ATTCAGATACCTGATCCTGA+AGG | 0.645280 | 2_3:+10966821 | None:intergenic |
| CATTAGCTGGAATACAAGGA+GGG | 0.651187 | 2_3:-10967110 | Msa0278070:CDS |
| TTGCTGTGCAGACAAGAGCA+AGG | 0.655414 | 2_3:+10967247 | None:intergenic |
| ACATTAGCTGGAATACAAGG+AGG | 0.676350 | 2_3:-10967111 | Msa0278070:CDS |
| GAAACAAATTCTAGAGAACG+TGG | 0.682142 | 2_3:-10966130 | Msa0278070:CDS |
| GCTTAAACAAGAATGAGGAG+AGG | 0.715396 | 2_3:-10966458 | Msa0278070:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATTTTTTAAATTGGAAAT+AGG | - | chr2_3:10966632-10966651 | Msa0278070:intron | 10.0% |
| !!! | TTATTTTTTAAATTGGAAAT+AGG | - | chr2_3:10966632-10966651 | Msa0278070:intron | 10.0% |
| !! | ACGATATTGTTAATAGAATT+TGG | - | chr2_3:10966492-10966511 | Msa0278070:CDS | 20.0% |
| !! | GTTTGAACTTATAATCTTAA+GGG | + | chr2_3:10966831-10966850 | None:intergenic | 20.0% |
| !! | AGTTTGAACTTATAATCTTA+AGG | + | chr2_3:10966832-10966851 | None:intergenic | 20.0% |
| !! | ACGATATTGTTAATAGAATT+TGG | - | chr2_3:10966492-10966511 | Msa0278070:CDS | 20.0% |
| !! | GTTTGAACTTATAATCTTAA+GGG | + | chr2_3:10966831-10966850 | None:intergenic | 20.0% |
| !! | AGTTTGAACTTATAATCTTA+AGG | + | chr2_3:10966832-10966851 | None:intergenic | 20.0% |
| ! | TGAAGTTATTGATGAAAAGT+TGG | - | chr2_3:10966268-10966287 | Msa0278070:CDS | 25.0% |
| ! | TGAAGTTATTGATGAAAAGT+TGG | - | chr2_3:10966268-10966287 | Msa0278070:CDS | 25.0% |
| ATGATTAGATCTTCCAACAA+TGG | + | chr2_3:10966128-10966147 | None:intergenic | 30.0% | |
| TCAATAACTTCAGAACTTTC+AGG | + | chr2_3:10966260-10966279 | None:intergenic | 30.0% | |
| TTGAGAATGATCACAAGAAT+AGG | - | chr2_3:10966333-10966352 | Msa0278070:CDS | 30.0% | |
| TTGAGATCTAAGAGTGATTT+AGG | - | chr2_3:10966437-10966456 | Msa0278070:CDS | 30.0% | |
| CTAAGAGTGATTTAGGTAAT+AGG | - | chr2_3:10966444-10966463 | Msa0278070:CDS | 30.0% | |
| TGATGTCTCAGTAATCAAAA+TGG | - | chr2_3:10966568-10966587 | Msa0278070:intron | 30.0% | |
| AATGAGTATAACCGTGTTTA+TGG | - | chr2_3:10966682-10966701 | Msa0278070:intron | 30.0% | |
| TTCATACCTTGAAGTTAACA+AGG | - | chr2_3:10966727-10966746 | Msa0278070:intron | 30.0% | |
| TAATCTAACTCATCATACTC+AGG | - | chr2_3:10966896-10966915 | Msa0278070:CDS | 30.0% | |
| !!! | AGCATTCTTGTTTTATGACT+TGG | + | chr2_3:10966984-10967003 | None:intergenic | 30.0% |
| TAAAACAAGAATGCTTGAGA+AGG | - | chr2_3:10966989-10967008 | Msa0278070:CDS | 30.0% | |
| AAAACAAGAATGCTTGAGAA+GGG | - | chr2_3:10966990-10967009 | Msa0278070:CDS | 30.0% | |
| TACATTTGATGGAACTCTAA+GGG | + | chr2_3:10967051-10967070 | None:intergenic | 30.0% | |
| TCTTATGTCACACCAAAATT+TGG | - | chr2_3:10967134-10967153 | Msa0278070:CDS | 30.0% | |
| ! | GAAGAATAGCTTCCAAATTT+TGG | + | chr2_3:10967149-10967168 | None:intergenic | 30.0% |
| GCTATTCTTCAATGAACATT+AGG | - | chr2_3:10967159-10967178 | Msa0278070:CDS | 30.0% | |
| ATGATTAGATCTTCCAACAA+TGG | + | chr2_3:10966128-10966147 | None:intergenic | 30.0% | |
| TCAATAACTTCAGAACTTTC+AGG | + | chr2_3:10966260-10966279 | None:intergenic | 30.0% | |
| TTGAGAATGATCACAAGAAT+AGG | - | chr2_3:10966333-10966352 | Msa0278070:CDS | 30.0% | |
| TTGAGATCTAAGAGTGATTT+AGG | - | chr2_3:10966437-10966456 | Msa0278070:CDS | 30.0% | |
| CTAAGAGTGATTTAGGTAAT+AGG | - | chr2_3:10966444-10966463 | Msa0278070:CDS | 30.0% | |
| TGATGTCTCAGTAATCAAAA+TGG | - | chr2_3:10966568-10966587 | Msa0278070:intron | 30.0% | |
| AATGAGTATAACCGTGTTTA+TGG | - | chr2_3:10966682-10966701 | Msa0278070:intron | 30.0% | |
| TTCATACCTTGAAGTTAACA+AGG | - | chr2_3:10966727-10966746 | Msa0278070:intron | 30.0% | |
| TAATCTAACTCATCATACTC+AGG | - | chr2_3:10966896-10966915 | Msa0278070:CDS | 30.0% | |
| !!! | AGCATTCTTGTTTTATGACT+TGG | + | chr2_3:10966984-10967003 | None:intergenic | 30.0% |
| TAAAACAAGAATGCTTGAGA+AGG | - | chr2_3:10966989-10967008 | Msa0278070:CDS | 30.0% | |
| AAAACAAGAATGCTTGAGAA+GGG | - | chr2_3:10966990-10967009 | Msa0278070:CDS | 30.0% | |
| TACATTTGATGGAACTCTAA+GGG | + | chr2_3:10967051-10967070 | None:intergenic | 30.0% | |
| TCTTATGTCACACCAAAATT+TGG | - | chr2_3:10967134-10967153 | Msa0278070:CDS | 30.0% | |
| ! | GAAGAATAGCTTCCAAATTT+TGG | + | chr2_3:10967149-10967168 | None:intergenic | 30.0% |
| GCTATTCTTCAATGAACATT+AGG | - | chr2_3:10967159-10967178 | Msa0278070:CDS | 30.0% | |
| !!! | TTCAATAGCCAGTTTTGAAG+TGG | + | chr2_3:10966237-10966256 | None:intergenic | 35.0% |
| ATTCCAGCTAATGTTGTTGA+TGG | + | chr2_3:10966296-10966315 | None:intergenic | 35.0% | |
| ACAACATTAGCTGGAATACA+AGG | - | chr2_3:10966299-10966318 | Msa0278070:CDS | 35.0% | |
| ACAAGAATAGGTCCAAAAGT+TGG | - | chr2_3:10966345-10966364 | Msa0278070:CDS | 35.0% | |
| !! | TATTGTTGACTCTCTTAGTC+AGG | - | chr2_3:10966382-10966401 | Msa0278070:CDS | 35.0% |
| AGTAATCAAAATGGACCTTC+AGG | - | chr2_3:10966577-10966596 | Msa0278070:intron | 35.0% | |
| AGTATAACCGTGTTTATGGT+TGG | - | chr2_3:10966686-10966705 | Msa0278070:intron | 35.0% | |
| GTATGAAGTTCAAATTCCCT+TGG | + | chr2_3:10966714-10966733 | None:intergenic | 35.0% | |
| GCTTTACCTTGTTAACTTCA+AGG | + | chr2_3:10966736-10966755 | None:intergenic | 35.0% | |
| ATCAAGAAAATGCAACCAGT+GGG | - | chr2_3:10966933-10966952 | Msa0278070:CDS | 35.0% | |
| CTTAAACAAGAATGAGGAGA+GGG | - | chr2_3:10966956-10966975 | Msa0278070:CDS | 35.0% | |
| TGAGAAGGGAAATAAGAGAA+AGG | - | chr2_3:10967004-10967023 | Msa0278070:CDS | 35.0% | |
| ! | GGATTCTAGTCTATTTGCTA+TGG | + | chr2_3:10967030-10967049 | None:intergenic | 35.0% |
| CTACATTTGATGGAACTCTA+AGG | + | chr2_3:10967052-10967071 | None:intergenic | 35.0% | |
| GATGGAGATTCTACATTTGA+TGG | + | chr2_3:10967062-10967081 | None:intergenic | 35.0% | |
| !! | TCTCTAAGACTATCAATGGA+TGG | + | chr2_3:10967080-10967099 | None:intergenic | 35.0% |
| !! | CCATTCTCTAAGACTATCAA+TGG | + | chr2_3:10967084-10967103 | None:intergenic | 35.0% |
| ! | CCATTGATAGTCTTAGAGAA+TGG | - | chr2_3:10967081-10967100 | Msa0278070:CDS | 35.0% |
| GAATGCAAATGAATCTTGTG+AGG | - | chr2_3:10967181-10967200 | Msa0278070:CDS | 35.0% | |
| TTCTATATTTAGCCCAGAGT+TGG | - | chr2_3:10967205-10967224 | Msa0278070:CDS | 35.0% | |
| ! | CTTTTGCATACACTGTTCAA+AGG | + | chr2_3:10967237-10967256 | None:intergenic | 35.0% |
| ! | GAAACAAATTCTAGAGAACG+TGG | - | chr2_3:10967283-10967302 | Msa0278070:CDS | 35.0% |
| GTGGAAGAAGAAATTGATGA+AGG | - | chr2_3:10967302-10967321 | Msa0278070:CDS | 35.0% | |
| !!! | TTCAATAGCCAGTTTTGAAG+TGG | + | chr2_3:10966237-10966256 | None:intergenic | 35.0% |
| ATTCCAGCTAATGTTGTTGA+TGG | + | chr2_3:10966296-10966315 | None:intergenic | 35.0% | |
| ACAACATTAGCTGGAATACA+AGG | - | chr2_3:10966299-10966318 | Msa0278070:CDS | 35.0% | |
| ACAAGAATAGGTCCAAAAGT+TGG | - | chr2_3:10966345-10966364 | Msa0278070:CDS | 35.0% | |
| !! | TATTGTTGACTCTCTTAGTC+AGG | - | chr2_3:10966382-10966401 | Msa0278070:CDS | 35.0% |
| AGTAATCAAAATGGACCTTC+AGG | - | chr2_3:10966577-10966596 | Msa0278070:intron | 35.0% | |
| AGTATAACCGTGTTTATGGT+TGG | - | chr2_3:10966686-10966705 | Msa0278070:intron | 35.0% | |
| GTATGAAGTTCAAATTCCCT+TGG | + | chr2_3:10966714-10966733 | None:intergenic | 35.0% | |
| GCTTTACCTTGTTAACTTCA+AGG | + | chr2_3:10966736-10966755 | None:intergenic | 35.0% | |
| ATCAAGAAAATGCAACCAGT+GGG | - | chr2_3:10966933-10966952 | Msa0278070:CDS | 35.0% | |
| CTTAAACAAGAATGAGGAGA+GGG | - | chr2_3:10966956-10966975 | Msa0278070:CDS | 35.0% | |
| TGAGAAGGGAAATAAGAGAA+AGG | - | chr2_3:10967004-10967023 | Msa0278070:CDS | 35.0% | |
| ! | GGATTCTAGTCTATTTGCTA+TGG | + | chr2_3:10967030-10967049 | None:intergenic | 35.0% |
| CTACATTTGATGGAACTCTA+AGG | + | chr2_3:10967052-10967071 | None:intergenic | 35.0% | |
| GATGGAGATTCTACATTTGA+TGG | + | chr2_3:10967062-10967081 | None:intergenic | 35.0% | |
| !! | TCTCTAAGACTATCAATGGA+TGG | + | chr2_3:10967080-10967099 | None:intergenic | 35.0% |
| !! | CCATTCTCTAAGACTATCAA+TGG | + | chr2_3:10967084-10967103 | None:intergenic | 35.0% |
| ! | CCATTGATAGTCTTAGAGAA+TGG | - | chr2_3:10967081-10967100 | Msa0278070:CDS | 35.0% |
| GAATGCAAATGAATCTTGTG+AGG | - | chr2_3:10967181-10967200 | Msa0278070:CDS | 35.0% | |
| TTCTATATTTAGCCCAGAGT+TGG | - | chr2_3:10967205-10967224 | Msa0278070:CDS | 35.0% | |
| ! | CTTTTGCATACACTGTTCAA+AGG | + | chr2_3:10967237-10967256 | None:intergenic | 35.0% |
| ! | GAAACAAATTCTAGAGAACG+TGG | - | chr2_3:10967283-10967302 | Msa0278070:CDS | 35.0% |
| GTGGAAGAAGAAATTGATGA+AGG | - | chr2_3:10967302-10967321 | Msa0278070:CDS | 35.0% | |
| AGCTAATGGGATTCCATTGT+TGG | - | chr2_3:10966112-10966131 | Msa0278070:CDS | 40.0% | |
| ! | GCTCTTAGAATGCTGTTTGT+TGG | + | chr2_3:10966201-10966220 | None:intergenic | 40.0% |
| TTCCAACACCACTTCAAAAC+TGG | - | chr2_3:10966226-10966245 | Msa0278070:CDS | 40.0% | |
| GAACCATCAACAACATTAGC+TGG | - | chr2_3:10966290-10966309 | Msa0278070:CDS | 40.0% | |
| ACATTAGCTGGAATACAAGG+AGG | - | chr2_3:10966302-10966321 | Msa0278070:CDS | 40.0% | |
| CATTAGCTGGAATACAAGGA+GGG | - | chr2_3:10966303-10966322 | Msa0278070:CDS | 40.0% | |
| ! | CTCAGGAAAATGCCAACTTT+TGG | + | chr2_3:10966360-10966379 | None:intergenic | 40.0% |
| AGAGAGTCAACAATATGCTC+AGG | + | chr2_3:10966377-10966396 | None:intergenic | 40.0% | |
| ! | TAGGAGTTTTCACACAGTTG+AGG | - | chr2_3:10966463-10966482 | Msa0278070:CDS | 40.0% |
| ATTCAGATACCTGATCCTGA+AGG | + | chr2_3:10966595-10966614 | None:intergenic | 40.0% | |
| CTTGGAACCAACCATAAACA+CGG | + | chr2_3:10966696-10966715 | None:intergenic | 40.0% | |
| ! | GTGTTTATGGTTGGTTCCAA+GGG | - | chr2_3:10966695-10966714 | Msa0278070:intron | 40.0% |
| ! | GGACGTAGTTTAAAATCCCT+CGG | + | chr2_3:10966810-10966829 | None:intergenic | 40.0% |
| !! | CACTGGTTGCATTTTCTTGA+TGG | + | chr2_3:10966934-10966953 | None:intergenic | 40.0% |
| CATCAAGAAAATGCAACCAG+TGG | - | chr2_3:10966932-10966951 | Msa0278070:CDS | 40.0% | |
| ! | TCATTCTTGTTTAAGCCCAC+TGG | + | chr2_3:10966951-10966970 | None:intergenic | 40.0% |
| ! | AGTGGGCTTAAACAAGAATG+AGG | - | chr2_3:10966950-10966969 | Msa0278070:CDS | 40.0% |
| GCTTAAACAAGAATGAGGAG+AGG | - | chr2_3:10966955-10966974 | Msa0278070:CDS | 40.0% | |
| ! | TTTGGTGTGACATAAGATCC+AGG | + | chr2_3:10967131-10967150 | None:intergenic | 40.0% |
| TATGCAAAAGCTTGAAGCAG+AGG | - | chr2_3:10967247-10967266 | Msa0278070:CDS | 40.0% | |
| AGCTAATGGGATTCCATTGT+TGG | - | chr2_3:10966112-10966131 | Msa0278070:CDS | 40.0% | |
| ! | GCTCTTAGAATGCTGTTTGT+TGG | + | chr2_3:10966201-10966220 | None:intergenic | 40.0% |
| TTCCAACACCACTTCAAAAC+TGG | - | chr2_3:10966226-10966245 | Msa0278070:CDS | 40.0% | |
| GAACCATCAACAACATTAGC+TGG | - | chr2_3:10966290-10966309 | Msa0278070:CDS | 40.0% | |
| ACATTAGCTGGAATACAAGG+AGG | - | chr2_3:10966302-10966321 | Msa0278070:CDS | 40.0% | |
| CATTAGCTGGAATACAAGGA+GGG | - | chr2_3:10966303-10966322 | Msa0278070:CDS | 40.0% | |
| ! | CTCAGGAAAATGCCAACTTT+TGG | + | chr2_3:10966360-10966379 | None:intergenic | 40.0% |
| AGAGAGTCAACAATATGCTC+AGG | + | chr2_3:10966377-10966396 | None:intergenic | 40.0% | |
| ! | TAGGAGTTTTCACACAGTTG+AGG | - | chr2_3:10966463-10966482 | Msa0278070:CDS | 40.0% |
| ATTCAGATACCTGATCCTGA+AGG | + | chr2_3:10966595-10966614 | None:intergenic | 40.0% | |
| CTTGGAACCAACCATAAACA+CGG | + | chr2_3:10966696-10966715 | None:intergenic | 40.0% | |
| ! | GTGTTTATGGTTGGTTCCAA+GGG | - | chr2_3:10966695-10966714 | Msa0278070:intron | 40.0% |
| ! | GGACGTAGTTTAAAATCCCT+CGG | + | chr2_3:10966810-10966829 | None:intergenic | 40.0% |
| !! | CACTGGTTGCATTTTCTTGA+TGG | + | chr2_3:10966934-10966953 | None:intergenic | 40.0% |
| CATCAAGAAAATGCAACCAG+TGG | - | chr2_3:10966932-10966951 | Msa0278070:CDS | 40.0% | |
| ! | TCATTCTTGTTTAAGCCCAC+TGG | + | chr2_3:10966951-10966970 | None:intergenic | 40.0% |
| ! | AGTGGGCTTAAACAAGAATG+AGG | - | chr2_3:10966950-10966969 | Msa0278070:CDS | 40.0% |
| GCTTAAACAAGAATGAGGAG+AGG | - | chr2_3:10966955-10966974 | Msa0278070:CDS | 40.0% | |
| ! | TTTGGTGTGACATAAGATCC+AGG | + | chr2_3:10967131-10967150 | None:intergenic | 40.0% |
| TATGCAAAAGCTTGAAGCAG+AGG | - | chr2_3:10967247-10967266 | Msa0278070:CDS | 40.0% | |
| !!! | AGCCAGTTTTGAAGTGGTGT+TGG | + | chr2_3:10966231-10966250 | None:intergenic | 45.0% |
| CAAAATGGACCTTCAGGATC+AGG | - | chr2_3:10966583-10966602 | Msa0278070:intron | 45.0% | |
| ! | CGTGTTTATGGTTGGTTCCA+AGG | - | chr2_3:10966694-10966713 | Msa0278070:intron | 45.0% |
| ATCGCTGAGCTGACAATTCA+AGG | - | chr2_3:10966760-10966779 | Msa0278070:intron | 45.0% | |
| TGAGCTGACAATTCAAGGAC+AGG | - | chr2_3:10966765-10966784 | Msa0278070:intron | 45.0% | |
| CAAGGACAGGTAGTTGAGTT+TGG | - | chr2_3:10966778-10966797 | Msa0278070:intron | 45.0% | |
| TTGAGTTTGGTTGTCTCCGA+GGG | - | chr2_3:10966791-10966810 | Msa0278070:intron | 45.0% | |
| TCAGACACTTGTACATGCGT+CGG | + | chr2_3:10966867-10966886 | None:intergenic | 45.0% | |
| ! | GGAGAGTATATTCCATCTGC+AGG | + | chr2_3:10967110-10967129 | None:intergenic | 45.0% |
| GCAGATGGAATATACTCTCC+TGG | - | chr2_3:10967110-10967129 | Msa0278070:CDS | 45.0% | |
| CAAAGGCAGATACCAACTCT+GGG | + | chr2_3:10967220-10967239 | None:intergenic | 45.0% | |
| TCAAAGGCAGATACCAACTC+TGG | + | chr2_3:10967221-10967240 | None:intergenic | 45.0% | |
| !!! | AGCCAGTTTTGAAGTGGTGT+TGG | + | chr2_3:10966231-10966250 | None:intergenic | 45.0% |
| CAAAATGGACCTTCAGGATC+AGG | - | chr2_3:10966583-10966602 | Msa0278070:intron | 45.0% | |
| ! | CGTGTTTATGGTTGGTTCCA+AGG | - | chr2_3:10966694-10966713 | Msa0278070:intron | 45.0% |
| ATCGCTGAGCTGACAATTCA+AGG | - | chr2_3:10966760-10966779 | Msa0278070:intron | 45.0% | |
| TGAGCTGACAATTCAAGGAC+AGG | - | chr2_3:10966765-10966784 | Msa0278070:intron | 45.0% | |
| CAAGGACAGGTAGTTGAGTT+TGG | - | chr2_3:10966778-10966797 | Msa0278070:intron | 45.0% | |
| TTGAGTTTGGTTGTCTCCGA+GGG | - | chr2_3:10966791-10966810 | Msa0278070:intron | 45.0% | |
| TCAGACACTTGTACATGCGT+CGG | + | chr2_3:10966867-10966886 | None:intergenic | 45.0% | |
| ! | GGAGAGTATATTCCATCTGC+AGG | + | chr2_3:10967110-10967129 | None:intergenic | 45.0% |
| GCAGATGGAATATACTCTCC+TGG | - | chr2_3:10967110-10967129 | Msa0278070:CDS | 45.0% | |
| CAAAGGCAGATACCAACTCT+GGG | + | chr2_3:10967220-10967239 | None:intergenic | 45.0% | |
| TCAAAGGCAGATACCAACTC+TGG | + | chr2_3:10967221-10967240 | None:intergenic | 45.0% | |
| !!! | TTTTAGTTTATTTTTTAAAT+TGG | - | chr2_3:10966625-10966644 | Msa0278070:intron | 5.0% |
| !!! | TTTTAGTTTATTTTTTAAAT+TGG | - | chr2_3:10966625-10966644 | Msa0278070:intron | 5.0% |
| !! | AGCAAGGTACTGGTCACTAG+TGG | + | chr2_3:10966153-10966172 | None:intergenic | 50.0% |
| TGCAGACAAGAGCAAGGTAC+TGG | + | chr2_3:10966163-10966182 | None:intergenic | 50.0% | |
| TTGCTGTGCAGACAAGAGCA+AGG | + | chr2_3:10966169-10966188 | None:intergenic | 50.0% | |
| GTTGAGTTTGGTTGTCTCCG+AGG | - | chr2_3:10966790-10966809 | Msa0278070:intron | 50.0% | |
| AGAGAATGGCTTCCTGCAGA+TGG | - | chr2_3:10967095-10967114 | Msa0278070:CDS | 50.0% | |
| !! | AGCAAGGTACTGGTCACTAG+TGG | + | chr2_3:10966153-10966172 | None:intergenic | 50.0% |
| TGCAGACAAGAGCAAGGTAC+TGG | + | chr2_3:10966163-10966182 | None:intergenic | 50.0% | |
| TTGCTGTGCAGACAAGAGCA+AGG | + | chr2_3:10966169-10966188 | None:intergenic | 50.0% | |
| GTTGAGTTTGGTTGTCTCCG+AGG | - | chr2_3:10966790-10966809 | Msa0278070:intron | 50.0% | |
| AGAGAATGGCTTCCTGCAGA+TGG | - | chr2_3:10967095-10967114 | Msa0278070:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_3 | gene | 10966104 | 10967331 | 10966104 | ID=Msa0278070;Name=Msa0278070 |
| chr2_3 | mRNA | 10966104 | 10967331 | 10966104 | ID=Msa0278070-mRNA-1;Parent=Msa0278070;Name=Msa0278070-mRNA-1;_AED=0.20;_eAED=0.20;_QI=0|1|0|1|1|1|2|0|304 |
| chr2_3 | exon | 10966831 | 10967331 | 10966831 | ID=Msa0278070-mRNA-1:exon:4860;Parent=Msa0278070-mRNA-1 |
| chr2_3 | exon | 10966104 | 10966517 | 10966104 | ID=Msa0278070-mRNA-1:exon:4859;Parent=Msa0278070-mRNA-1 |
| chr2_3 | CDS | 10966831 | 10967331 | 10966831 | ID=Msa0278070-mRNA-1:cds;Parent=Msa0278070-mRNA-1 |
| chr2_3 | CDS | 10966104 | 10966517 | 10966104 | ID=Msa0278070-mRNA-1:cds;Parent=Msa0278070-mRNA-1 |
| Gene Sequence |
| Protein sequence |
