AlfalfaGEDB | Msa0281350

M. sativa cultivar zhongmu-4 / Msa0281350

KEGG: -
GO: -
PFAM: PF00403.29

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0281350	XP_013463255.1	90.667	300	16	3	1	293	1	295	6.60e-168	477

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0281350	sp\|Q84J88\|HIP36_ARATH	51.613	93	41	1	10	98	25	117	1.44e-27	112

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0002580	Msa0281350	0.803338	3.656473e-49	-8.615850e-47
Msa0005890	Msa0281350	0.812487	4.136535e-51	-8.615850e-47
Msa0018160	Msa0281350	0.803894	2.803288e-49	-8.615850e-47
Msa0028420	Msa0281350	0.811531	6.682866e-51	-8.615850e-47
Msa0052260	Msa0281350	0.818784	1.635970e-52	-8.615850e-47
Msa0071880	Msa0281350	0.803061	4.173164e-49	-8.615850e-47
Msa0090400	Msa0281350	0.820067	8.344421e-53	-8.615850e-47
Msa0117480	Msa0281350	0.802840	4.635871e-49	-8.615850e-47
Msa0124280	Msa0281350	0.815265	1.010055e-51	-8.615850e-47
Msa0137880	Msa0281350	0.822338	2.499261e-53	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0281350	MtrunA17_Chr2g0296001	90.667	300	16	3	1	293	59	353	2.56e-171	478
Msa0281350	MtrunA17_Chr4g0067291	52.322	323	96	15	1	293	64	358	1.55e-85	260
Msa0281350	MtrunA17_Chr7g0269081	43.902	123	65	1	2	120	9	131	6.89e-23	95.9
Msa0281350	MtrunA17_Chr1g0208301	58.824	68	24	1	12	75	10	77	1.90e-21	92.8
Msa0281350	MtrunA17_Chr2g0287751	55.714	70	27	1	10	75	5	74	6.77e-20	89.4
Msa0281350	MtrunA17_Chr4g0065651	55.714	70	27	1	10	75	5	74	2.02e-19	88.2
Msa0281350	MtrunA17_Chr0c22g0493881	55.714	70	27	1	10	75	5	74	2.10e-19	87.0
Msa0281350	MtrunA17_Chr4g0065621	55.714	70	27	1	10	75	5	74	1.68e-18	84.7
Msa0281350	MtrunA17_Chr1g0191671	52.941	68	28	1	12	75	7	74	2.97e-17	81.6
Msa0281350	MtrunA17_Chr1g0192131	48.780	82	37	2	1	77	1	82	4.42e-17	80.9

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0281350	AT5G27690.1	51.613	93	41	1	10	98	25	117	1.46e-28	112
Msa0281350	AT1G56210.1	30.931	333	170	9	14	293	39	364	4.85e-21	92.0
Msa0281350	AT3G06130.2	58.571	70	25	1	10	75	5	74	2.71e-20	89.7
Msa0281350	AT1G23000.1	57.746	71	26	1	12	78	10	80	3.34e-20	89.7
Msa0281350	AT3G06130.1	58.571	70	25	1	10	75	5	74	3.97e-20	90.5
Msa0281350	AT1G23000.2	54.217	83	31	2	3	78	58	140	6.44e-20	89.4
Msa0281350	AT5G19090.2	57.143	70	26	1	10	75	5	74	9.08e-20	89.4
Msa0281350	AT5G19090.3	57.143	70	26	1	10	75	5	74	9.08e-20	89.4
Msa0281350	AT5G19090.5	57.143	70	26	1	10	75	5	74	1.35e-19	89.4
Msa0281350	AT5G19090.4	57.143	70	26	1	10	75	5	74	1.35e-19	89.4

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Find 84 sgRNAs with CRISPR-Local

Find 210 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATGCCAAGAATGTACTT+GGG	0.667143	2_3:+16742079	None:intergenic
AAAGATGGGTGTAGTGGAAA+TGG	0.408222	2_3:-16741224	Msa0281350:CDS
AAAGCTAGGAGGACACGTGT+AGG	0.607435	2_3:+16740944	None:intergenic
AAAGTACGCTGAGATTTGGC+CGG	0.585267	2_3:-16741501	Msa0281350:CDS
AAAGTTTCTATCCACTGTGA+AGG	0.572186	2_3:-16741771	Msa0281350:CDS
AAATAGAGAGTGAGTGAATG+TGG	0.492826	2_3:+16742034	None:intergenic
AACCATGTTCCTCCGGTGAG+TGG	0.571405	2_3:-16741284	Msa0281350:CDS
AACTGACGCCGGAGAGTCGC+CGG	0.475090	2_3:-16741324	Msa0281350:CDS
AACTGGTTGTTACCCTTCAA+TGG	0.433910	2_3:-16741045	Msa0281350:CDS
AAGAGTGGACCAGCACACAG+TGG	0.728445	2_3:-16741155	Msa0281350:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAATGCCAAGAATGTACTT+GGG	+	chr2_3:16740851-16740870	None:intergenic	30.0%
ATTAGTACCTGATACTTGAA+AGG	+	chr2_3:16741001-16741020	None:intergenic	30.0%
GTGTGTGTAACATTTCATAA+GGG	+	chr2_3:16741046-16741065	None:intergenic	30.0%
TGTGTGTGTAACATTTCATA+AGG	+	chr2_3:16741047-16741066	None:intergenic	30.0%
CACACATTTATGCTTTATAG+TGG	-	chr2_3:16741061-16741080	Msa0281350:CDS	30.0%
TTTACCATGCATAACTATGA+AGG	-	chr2_3:16741308-16741327	Msa0281350:CDS	30.0%
CAACAAAAAGTAACAGTAAC+TGG	-	chr2_3:16741359-16741378	Msa0281350:CDS	30.0%
CAAAGAGAAGAAAAAGAAGA+AGG	-	chr2_3:16741480-16741499	Msa0281350:CDS	30.0%
GTTACCAAGTATGAAAATGA+AGG	-	chr2_3:16741556-16741575	Msa0281350:intron	30.0%
GATGACATATAAACCATTGA+AGG	+	chr2_3:16741898-16741917	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_3	gene	16740848	16742101	16740848	ID=Msa0281350;Name=Msa0281350
chr2_3	mRNA	16740848	16742101	16740848	ID=Msa0281350-mRNA-1;Parent=Msa0281350;Name=Msa0281350-mRNA-1;_AED=0.16;_eAED=0.16;_QI=120\|0.66\|0.5\|1\|0.33\|0.5\|4\|0\|293
chr2_3	exon	16740848	16741552	16740848	ID=Msa0281350-mRNA-1:exon:6929;Parent=Msa0281350-mRNA-1
chr2_3	exon	16741564	16741619	16741564	ID=Msa0281350-mRNA-1:exon:6928;Parent=Msa0281350-mRNA-1
chr2_3	exon	16741730	16741805	16741730	ID=Msa0281350-mRNA-1:exon:6927;Parent=Msa0281350-mRNA-1
chr2_3	exon	16741937	16742101	16741937	ID=Msa0281350-mRNA-1:exon:6926;Parent=Msa0281350-mRNA-1
chr2_3	five_prime_UTR	16741982	16742101	16741982	ID=Msa0281350-mRNA-1:five_prime_utr;Parent=Msa0281350-mRNA-1
chr2_3	CDS	16741937	16741981	16741937	ID=Msa0281350-mRNA-1:cds;Parent=Msa0281350-mRNA-1
chr2_3	CDS	16741730	16741805	16741730	ID=Msa0281350-mRNA-1:cds;Parent=Msa0281350-mRNA-1
chr2_3	CDS	16741564	16741619	16741564	ID=Msa0281350-mRNA-1:cds;Parent=Msa0281350-mRNA-1
chr2_3	CDS	16740848	16741552	16740848	ID=Msa0281350-mRNA-1:cds;Parent=Msa0281350-mRNA-1

Gene Sequence

>Msa0281350

ATGGATGCAAAAGCAAAACCCTCTTCAGAACCTTTCAAGTATCAGACATGGTTCTTGAAAGTTTCTATCCACTGTGAAGGTTGCAGAAAGAAAGTAAAGAAAGTTTTGAAGCGCATTGATGGTGTTTTCACTGCAACAATTGATTCACAACAACAAAAAGTAACAGTAACTGGAAATACCCTTTTAAGGAAGCTGGTCAAAGCTGGAAAGTACGCTGAGATTTGGCCGGAGAATCTTGACGGGAAGGGAAAAAACTCCGGCAAAGAGAAGAAAAAGAAGAAGGATCAGAATGAACCAAAAGAAGCACAAAGCTTGCAAAACAAGGGAACTGAAAGTGTTACCAAGTATGAAAATGAAGGTAAAAACAAGAACAAAAAGTCAAAAACTGACGCCGGAGAGTCGCCGGAAAAGTCACCGGACGGTAACCATGTTCCTCCGGTGAGTGGTGGAGGTGGTTCTGATAATAATAAGAAGAAGAAAAAGAAAGATGGGTGTAGTGGAAATGGAAATGGAAATGGAAATGATGGAAGTGATGGTTTGACTACAGTAGCTAAGAGTGGACCAGCACACAGTGGATTCCAATTTCAGAATCTTGGTCAGACTATGGCCCACCAAGTGAATCTCAGCCCTACACGTCAGCAATCAATCTTGTATCCATCAGAAACTGGTTGTTACCCTTCAATGGTTTATATGTCATCAGCTTACAATAGATTGTATCCTATGGGAAGAGTTGGTGATCCTTCTTATCATGTTCCATCTTCACCCTACACGTGTCCTCCTAGCTTTGTTGATCAATATGGTACTTATCAGGTTCAATCTGGACCGTTGGTTCCTTTTGAGCTATTTAGTGATGAAAATGCTAATGGATGTTCCATTATGTGA

Protein sequence

>Msa0281350

MDAKAKPSSEPFKYQTWFLKVSIHCEGCRKKVKKVLKRIDGVFTATIDSQQQKVTVTGNTLLRKLVKAGKYAEIWPENLDGKGKNSGKEKKKKKDQNEPKEAQSLQNKGTESVTKYENEGKNKNKKSKTDAGESPEKSPDGNHVPPVSGGGGSDNNKKKKKKDGCSGNGNGNGNDGSDGLTTVAKSGPAHSGFQFQNLGQTMAHQVNLSPTRQQSILYPSETGCYPSMVYMSSAYNRLYPMGRVGDPSYHVPSSPYTCPPSFVDQYGTYQVQSGPLVPFELFSDENANGCSIM*