AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1343430


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1343430 MtrunA17_Chr4g0054351 97.269 659 12 3 1 654 1 658 0.0 1335
Msa1343430 MtrunA17_Chr3g0135161 53.499 686 257 23 1 653 1 657 0.0 565
Msa1343430 MtrunA17_Chr1g0152161 51.603 686 274 21 1 654 1 660 0.0 544
Msa1343430 MtrunA17_Chr5g0400871 48.099 684 185 29 1 654 1 544 5.77e-167 488
Msa1343430 MtrunA17_Chr8g0343851 47.251 491 181 10 18 492 3 431 1.18e-128 391
Msa1343430 MtrunA17_Chr4g0032631 57.862 318 105 7 248 558 121 416 1.62e-111 346
Msa1343430 MtrunA17_Chr4g0072291 72.018 218 58 1 293 507 143 360 3.42e-111 344
Msa1343430 MtrunA17_Chr2g0328971 67.073 246 74 3 300 539 158 402 3.13e-108 337
Msa1343430 MtrunA17_Chr7g0249621 66.797 256 69 5 298 539 248 501 2.63e-107 339
Msa1343430 MtrunA17_Chr5g0412151 80.108 186 34 1 300 482 215 400 5.63e-95 302
Msa1343430 MtrunA17_Chr4g0073521 71.084 166 48 0 308 473 46 211 3.29e-82 263
Msa1343430 MtrunA17_Chr7g0216601 62.366 186 66 2 291 473 48 232 4.05e-75 246
Msa1343430 MtrunA17_Chr8g0355191 63.636 176 63 1 308 483 54 228 8.25e-74 243
Msa1343430 MtrunA17_Chr6g0452911 61.340 194 65 1 290 473 42 235 1.38e-73 241
Msa1343430 MtrunA17_Chr4g0002011 68.639 169 50 1 308 473 35 203 3.95e-71 233
Msa1343430 MtrunA17_Chr8g0355181 50.612 245 114 3 308 552 55 292 9.46e-70 231
Msa1343430 MtrunA17_Chr8g0362541 49.612 258 114 3 262 505 23 278 2.81e-69 231
Msa1343430 MtrunA17_Chr8g0367311 70.548 146 43 0 346 491 22 167 5.18e-69 225
Msa1343430 MtrunA17_Chr2g0305821 58.333 144 48 2 278 419 24 157 2.32e-44 155
Msa1343430 MtrunA17_Chr4g0053181 53.333 165 69 3 312 476 176 332 4.58e-41 157
Msa1343430 MtrunA17_Chr7g0257361 63.077 130 40 2 307 433 55 179 6.03e-41 154
Msa1343430 MtrunA17_Chr5g0401891 53.333 165 69 3 312 476 152 308 1.89e-40 155
Msa1343430 MtrunA17_Chr4g0030191 49.419 172 79 3 312 483 131 294 1.01e-38 149
Msa1343430 MtrunA17_Chr7g0263581 50.303 165 74 3 312 476 139 295 1.21e-38 149
Msa1343430 MtrunA17_Chr2g0325911 46.667 165 65 4 312 476 134 275 4.08e-30 124
Msa1343430 MtrunA17_Chr2g0305831 73.684 57 15 0 417 473 3 59 2.44e-23 98.6
Msa1343430 MtrunA17_Chr3g0126151 47.368 95 49 1 357 451 47 140 4.52e-22 92.8
Msa1343430 MtrunA17_Chr8g0367321 48.214 112 43 4 240 347 93 193 3.00e-21 92.4
Msa1343430 MtrunA17_Chr1g0170761 39.007 141 78 3 288 428 113 245 7.39e-16 80.1
Msa1343430 MtrunA17_Chr4g0044901 36.449 107 63 3 412 515 96 200 1.41e-11 64.7
Msa1343430 MtrunA17_Chr1g0158971 49.315 73 36 1 396 468 99 170 1.50e-11 66.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1343430 AT4G37750.1 51.978 556 171 19 1 522 1 494 5.99e-157 464
Msa1343430 AT1G72570.1 71.721 244 63 3 252 491 164 405 4.26e-119 361
Msa1343430 AT5G57390.2 82.979 188 28 2 300 484 73 259 2.49e-110 340
Msa1343430 AT1G51190.1 66.535 254 77 4 248 496 128 378 4.06e-110 343
Msa1343430 AT3G20840.1 65.399 263 59 5 248 496 125 369 2.10e-109 342
Msa1343430 AT5G57390.1 82.979 188 28 2 300 484 191 377 3.00e-109 341
Msa1343430 AT5G17430.2 63.235 272 92 3 300 568 136 402 3.95e-107 334
Msa1343430 AT5G17430.1 63.235 272 92 3 300 568 198 464 1.14e-106 335
Msa1343430 AT5G10510.2 73.737 198 52 0 285 482 203 400 5.34e-92 295
Msa1343430 AT5G65510.4 69.014 213 63 1 285 494 146 358 6.73e-91 289
Msa1343430 AT5G65510.2 69.014 213 63 1 285 494 204 416 8.05e-91 291
Msa1343430 AT5G65510.1 69.014 213 63 1 285 494 204 416 8.05e-91 291
Msa1343430 AT5G10510.7 72.637 201 52 1 285 482 203 403 4.96e-90 290
Msa1343430 AT5G10510.5 72.637 201 52 1 285 482 203 403 4.96e-90 290
Msa1343430 AT5G10510.6 72.637 201 52 1 285 482 241 441 8.94e-90 291
Msa1343430 AT5G10510.4 72.637 201 52 1 285 482 241 441 8.94e-90 291
Msa1343430 AT5G10510.1 72.637 201 52 1 285 482 226 426 8.97e-90 290
Msa1343430 AT5G10510.3 65.611 221 53 1 285 482 241 461 1.89e-85 280
Msa1343430 AT5G65510.3 71.429 161 43 1 285 442 146 306 7.04e-79 253
Msa1343430 AT3G54320.3 68.047 169 51 1 308 473 61 229 1.49e-68 230
Msa1343430 AT3G54320.1 68.047 169 51 1 308 473 61 229 2.02e-68 230
Msa1343430 AT1G79700.2 67.456 169 52 1 308 473 48 216 1.60e-62 210
Msa1343430 AT1G16060.1 66.474 173 55 1 304 473 50 222 4.78e-61 207
Msa1343430 AT1G79700.1 63.314 169 49 2 308 473 48 206 8.72e-55 189
Msa1343430 AT3G54320.4 70.312 128 38 0 346 473 36 163 5.50e-51 181
Msa1343430 AT3G54320.5 70.312 128 38 0 346 473 36 163 5.50e-51 181
Msa1343430 AT1G79700.4 67.969 128 41 0 346 473 7 134 3.61e-43 155
Msa1343430 AT1G79700.3 67.969 128 41 0 346 473 13 140 3.65e-43 155
Msa1343430 AT1G16060.3 66.418 134 45 0 340 473 19 152 5.43e-42 154
Msa1343430 AT4G36920.1 42.449 245 112 5 236 476 68 287 2.50e-41 156
Msa1343430 AT4G36920.2 42.449 245 112 5 236 476 68 287 2.50e-41 156
Msa1343430 AT5G67180.3 48.851 174 81 3 312 485 96 261 1.06e-40 150
Msa1343430 AT2G41710.1 55.921 152 56 3 285 433 46 189 1.37e-40 154
Msa1343430 AT5G67180.2 49.143 175 81 3 312 486 96 262 1.79e-40 150
Msa1343430 AT2G41710.4 55.921 152 56 3 285 433 46 189 2.75e-40 154
Msa1343430 AT5G67180.1 49.143 175 81 3 312 486 96 262 4.44e-40 150
Msa1343430 AT2G41710.2 54.140 157 56 4 285 433 46 194 3.33e-38 147
Msa1343430 AT2G28550.3 49.697 165 75 3 312 476 153 309 3.08e-37 145
Msa1343430 AT2G41710.3 59.504 121 41 2 316 433 109 224 4.84e-34 135
Msa1343430 AT3G54320.2 72.727 88 24 0 386 473 1 88 7.22e-32 125
Msa1343430 AT1G16060.2 70.455 88 26 0 386 473 1 88 5.77e-31 120
Msa1343430 AT1G16060.4 70.455 88 26 0 386 473 1 88 5.77e-31 120
Msa1343430 AT1G16060.6 70.455 88 26 0 386 473 1 88 5.77e-31 120
Msa1343430 AT1G16060.5 70.455 88 26 0 386 473 1 88 5.77e-31 120
Msa1343430 AT2G28550.4 49.275 138 62 3 312 449 153 282 6.03e-31 124
Msa1343430 AT5G67180.4 48.252 143 66 3 312 454 96 230 3.67e-30 119
Msa1343430 AT2G28550.1 45.455 165 67 4 312 476 153 294 3.14e-29 121
Msa1343430 AT2G28550.2 49.194 124 55 3 312 435 153 268 2.44e-26 109
Msa1343430 AT2G28550.6 49.194 124 55 3 312 435 153 268 2.44e-26 109
Msa1343430 AT2G39250.2 42.202 109 56 2 313 421 109 210 4.65e-23 99.0
Msa1343430 AT2G39250.1 38.760 129 72 2 293 421 89 210 1.39e-22 99.8
Msa1343430 AT2G28550.5 45.038 131 56 2 346 476 14 128 4.59e-21 94.4
Msa1343430 AT5G60120.4 45.238 126 61 3 309 434 157 274 1.33e-19 92.0
Msa1343430 AT5G60120.3 45.238 126 61 3 309 434 157 274 1.33e-19 92.0
Msa1343430 AT5G60120.5 45.238 126 61 3 309 434 157 274 1.33e-19 92.0
Msa1343430 AT5G60120.6 39.873 158 72 5 309 466 157 291 2.12e-19 92.0
Msa1343430 AT5G60120.1 39.873 158 72 5 309 466 157 291 2.27e-19 92.0
Msa1343430 AT5G60120.2 39.873 158 72 5 309 466 157 291 3.01e-19 92.0
Msa1343430 AT3G54990.2 46.154 104 49 2 312 415 122 218 3.57e-18 85.1
Msa1343430 AT3G54990.1 46.154 104 49 2 312 415 122 218 1.96e-17 84.7
Msa1343430 AT1G16060.7 77.193 57 13 0 417 473 10 66 4.26e-16 77.4
Msa1343430 AT1G03800.1 53.226 62 28 1 412 473 53 113 7.71e-12 66.2
Msa1343430 AT5G65130.1 34.752 141 68 5 380 497 72 211 8.52e-11 63.9
Msa1343430 AT5G65130.2 34.752 141 68 5 380 497 74 213 9.20e-11 63.5

Find 127 sgRNAs with CRISPR-Local

Find 203 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTGCCTTGGTTAGTATATA+AGG 0.203049 tig0006422:+5742 Msa1343430:intergenic
TAAAGGATTGTAAAATGTTT+AGG 0.209265 tig0006422:+2080 Msa1343430:intergenic
CAAATAGTAATTTGAATTCT+TGG 0.209522 tig0006422:-2449 Msa1343430:CDS
TCTACAATACCATGTCTTAA+AGG 0.217384 tig0006422:+2063 Msa1343430:intergenic
CAAGAATTCAAATTACTATT+TGG 0.219550 tig0006422:+2450 Msa1343430:intergenic
AGTAACTATTGTTACTCTTA+TGG 0.248617 tig0006422:-5380 Msa1343430:CDS
AAAGGATTGTAAAATGTTTA+GGG 0.256300 tig0006422:+2081 Msa1343430:intergenic
ATCTATCTATAAACTCTCTT+TGG 0.262548 tig0006422:+5713 Msa1343430:intergenic
AGGAAATCTATTGATACTTT+TGG 0.282332 tig0006422:-4582 Msa1343430:CDS
TTCAACAGCTTCAAAACTAT+TGG 0.285703 tig0006422:-2484 Msa1343430:CDS
AATATTGGTTCAATGGCTTA+TGG 0.295832 tig0006422:-4762 Msa1343430:CDS
AATGCTAGGTCTTCATTCTA+TGG 0.296635 tig0006422:+5835 Msa1343430:intergenic
GGAGATATGAAGCTCATCTA+TGG 0.306792 tig0006422:-4411 Msa1343430:CDS
CTAAAATGTAGTTACTAAAA+AGG 0.307240 tig0006422:+2121 Msa1343430:intergenic
GGGACCCTTCACAACATCTT+AGG 0.319809 tig0006422:-2428 Msa1343430:CDS
ATAAGCCATTGAACCAATAT+TGG 0.320548 tig0006422:+4764 Msa1343430:intergenic
AATTTCAATGCAGAAGAATA+TGG 0.321865 tig0006422:-2751 Msa1343430:CDS
AACCATGAGTTGATGTTAGA+AGG 0.326730 tig0006422:-4960 Msa1343430:CDS
GTTCTTTCATTCTCAAATCT+TGG 0.331942 tig0006422:+2684 Msa1343430:intergenic
CTGTTGAAGTTGTTGATGTT+GGG 0.335268 tig0006422:+2713 Msa1343430:intergenic
TCTCCTCAAATGAATAATAT+TGG 0.338994 tig0006422:-5506 Msa1343430:CDS
ACATTAACAATGAAAATAAC+TGG 0.340271 tig0006422:-5544 Msa1343430:CDS
AAATAGTAATTTGAATTCTT+GGG 0.341154 tig0006422:-2448 Msa1343430:CDS
GACTTAGTGGTTTAAAGAAC+TGG 0.346259 tig0006422:-4875 Msa1343430:CDS
ATCAGATTTGAGAGGCATAA+TGG 0.354338 tig0006422:+5319 Msa1343430:intergenic
GATAGATTTCATTACATTGT+TGG 0.357911 tig0006422:-5697 Msa1343430:five_prime_UTR
TCAAGCAGCACTCAAGTATT+GGG 0.359648 tig0006422:-3875 Msa1343430:CDS
CTTGCCATCTTCCATGTTGA+TGG 0.372286 tig0006422:+3406 Msa1343430:intergenic
GGTAATAAAGATCTATATCT+TGG 0.375013 tig0006422:-3363 Msa1343430:CDS
AAAGAAGGCCAAAGCAGAAA+AGG 0.375414 tig0006422:-4373 Msa1343430:CDS
TGTATCAAATGCTTCTTCAT+TGG 0.379502 tig0006422:-2580 Msa1343430:CDS
TGATGGATCTCTTTATGAAA+TGG 0.383299 tig0006422:-5300 Msa1343430:CDS
GAAGACCTAGCATTGCTTGC+TGG 0.391924 tig0006422:-5826 Msa1343430:five_prime_UTR
TCTGTTGAAGTTGTTGATGT+TGG 0.394185 tig0006422:+2712 Msa1343430:intergenic
GTTGGTTAGATACTTAGATA+TGG 0.394209 tig0006422:-5679 Msa1343430:five_prime_UTR
AGCAGAAGCAAATTGTTCAT+AGG 0.397213 tig0006422:-4602 Msa1343430:CDS
AACAATGAAAATAACTGGTT+AGG 0.421756 tig0006422:-5539 Msa1343430:CDS
TGGATCCAATATTGGTTCAA+TGG 0.423285 tig0006422:-4769 Msa1343430:CDS
GGTGAAGATCATGGACTTAG+TGG 0.425302 tig0006422:-4888 Msa1343430:CDS
AAGGGTATATGTATATCTAA+AGG 0.426431 tig0006422:+5761 Msa1343430:intergenic
AGGGTATATGTATATCTAAA+GGG 0.435527 tig0006422:+5762 Msa1343430:intergenic
TCAGATTTGAGAGGCATAAT+GGG 0.436788 tig0006422:+5320 Msa1343430:intergenic
TTTATTAGGCATAGGTGGAC+TGG 0.438736 tig0006422:-4433 Msa1343430:intron
ATCAAGCAGCACTCAAGTAT+TGG 0.444500 tig0006422:-3876 Msa1343430:CDS
GTGCCTTGGTTAGTATATAA+GGG 0.446634 tig0006422:+5743 Msa1343430:intergenic
ACACCAATATTATTCATTTG+AGG 0.447211 tig0006422:+5503 Msa1343430:intergenic
TATAATATGACAACTGTTGT+TGG 0.447627 tig0006422:+4997 Msa1343430:intergenic
TCAACATTGAACAAGCTAGA+AGG 0.451377 tig0006422:-2863 Msa1343430:CDS
GGTGAATGTGGATCCAATAT+TGG 0.454709 tig0006422:-4777 Msa1343430:CDS
GAGGGACAATATGTAAGAAA+TGG 0.454968 tig0006422:-2275 Msa1343430:three_prime_UTR
GATGGGAGATAGTAAAATTG+AGG 0.459317 tig0006422:-2251 Msa1343430:three_prime_UTR
GGAAGATGGCAAGCTCGAAT+TGG 0.460222 tig0006422:-3396 Msa1343430:CDS
CCTTGTTACTCCTCTGTACA+TGG 0.462036 tig0006422:+3546 Msa1343430:intergenic
ACAAGCTTGCAAAATCTCTC+TGG 0.463000 tig0006422:-2516 Msa1343430:CDS
TGTTGAAAATTCTGTTGCTA+TGG 0.468546 tig0006422:-4655 Msa1343430:CDS
ATGCTAGGTCTTCATTCTAT+GGG 0.475763 tig0006422:+5836 Msa1343430:intergenic
TGTGATAGAGAACAAAAGAA+AGG 0.478820 tig0006422:+2349 Msa1343430:intergenic
TCAAACATGGGTGAAGATCA+TGG 0.480026 tig0006422:-4897 Msa1343430:CDS
CAAAGAACATCTCAATATAG+AGG 0.486736 tig0006422:-4558 Msa1343430:CDS
ATGAAATGGAAGCTCTTAGC+AGG 0.491080 tig0006422:-5286 Msa1343430:CDS
AATATGTTGCTCATTTAAGA+AGG 0.492255 tig0006422:-3671 Msa1343430:intron
CAAAGCAGAAAAGGAAGACA+AGG 0.499730 tig0006422:-4364 Msa1343430:intron
CTGGCATCTGAGGCAAAGAA+AGG 0.499839 tig0006422:+2400 Msa1343430:intergenic
GCTCGAATTGGTAGAGTAGC+TGG 0.499873 tig0006422:-3384 Msa1343430:CDS
GAGTAACAATAGTTACTAAG+AGG 0.502157 tig0006422:+5386 Msa1343430:intergenic
TTGTGTCAAAGCATGTTTCG+AGG 0.505861 tig0006422:-2162 Msa1343430:three_prime_UTR
TGATCATGTCCATGACTAGC+TGG 0.509563 tig0006422:+4837 Msa1343430:intergenic
ATGGGAGATAGTAAAATTGA+GGG 0.510372 tig0006422:-2250 Msa1343430:three_prime_UTR
GGACTTGAACATGAAAATGC+TGG 0.514334 tig0006422:-5359 Msa1343430:CDS
GTGATAGAGAACAAAAGAAA+GGG 0.521763 tig0006422:+2350 Msa1343430:intergenic
TTGTTGTCATATGCAGAAGA+AGG 0.522088 tig0006422:+2789 Msa1343430:intergenic
TAGCTTGTTCAATGTTGAGA+AGG 0.523772 tig0006422:+2868 Msa1343430:intergenic
AATGAAGAATATGACAAGAC+AGG 0.524291 tig0006422:-3694 Msa1343430:CDS
TTATTAGGCATAGGTGGACT+GGG 0.524849 tig0006422:-4432 Msa1343430:intron
TGGTAAAAGCTTGCTTGAAG+TGG 0.527376 tig0006422:+5416 Msa1343430:intergenic
GCAGAAGCAGAAGCAGAAGA+AGG 0.529348 tig0006422:+5452 Msa1343430:intergenic
GTACTACTACATGCATAATG+AGG 0.531601 tig0006422:+5089 Msa1343430:intergenic
ATTATGCCTCTCAAATCTGA+TGG 0.532902 tig0006422:-5317 Msa1343430:CDS
AAGCAAAGTCAAACTTCAAG+TGG 0.535525 tig0006422:-4933 Msa1343430:CDS
GACACCATCAACATGGAAGA+TGG 0.537820 tig0006422:-3410 Msa1343430:CDS
ACCCTTCTAACATCAACTCA+TGG 0.539230 tig0006422:+4958 Msa1343430:intergenic
ACCATGAGTTGATGTTAGAA+GGG 0.549490 tig0006422:-4959 Msa1343430:CDS
TACTACTACATGCATAATGA+GGG 0.551148 tig0006422:+5090 Msa1343430:intergenic
GCTATGGATACAAAGAAAAG+AGG 0.553448 tig0006422:-4639 Msa1343430:CDS
AATTGTTTATTAGGCATAGG+TGG 0.555057 tig0006422:-4438 Msa1343430:intron
TGGCATCTGAGGCAAAGAAA+GGG 0.555089 tig0006422:+2401 Msa1343430:intergenic
GATGATTGTTCCTGTTGTAG+AGG 0.558499 tig0006422:-4808 Msa1343430:CDS
TTGAAGTTGTTGATGTTGGG+AGG 0.565145 tig0006422:+2716 Msa1343430:intergenic
ACTTAGTGGTTTAAAGAACT+GGG 0.566240 tig0006422:-4874 Msa1343430:CDS
GACAACAGTTGCAAGAAAGA+AGG 0.566962 tig0006422:-4388 Msa1343430:CDS
CAATATGTAAGAAATGGTGA+TGG 0.568192 tig0006422:-2269 Msa1343430:three_prime_UTR
GTATTCCAGCAAGCAATGCT+AGG 0.570286 tig0006422:+5821 Msa1343430:intergenic
GGGAAGTTTATGTGAGTGGA+TGG 0.574919 tig0006422:+3850 Msa1343430:intergenic
AACAGGGAAGTTTATGTGAG+TGG 0.577161 tig0006422:+3846 Msa1343430:intergenic
ACACAGCTAGACTGAGAGCT+AGG 0.578119 tig0006422:+4708 Msa1343430:intergenic
GAGATATGAAGCTCATCTAT+GGG 0.580404 tig0006422:-4410 Msa1343430:CDS
AATATGTAAGAAATGGTGAT+GGG 0.581590 tig0006422:-2268 Msa1343430:three_prime_UTR
AGTTTGAGCAGTTCAAGAGA+AGG 0.582795 tig0006422:-2552 Msa1343430:CDS
GAAGGCCTAAGATGTTGTGA+AGG 0.585697 tig0006422:+2423 Msa1343430:intergenic
GAGGAAAATGAAGGTGAATG+TGG 0.588553 tig0006422:-4789 Msa1343430:CDS
AAAAGCAGTGGATTCTCAAG+AGG 0.594604 tig0006422:-3574 Msa1343430:CDS
AAAGCAGTGGATTCTCAAGA+GGG 0.594710 tig0006422:-3573 Msa1343430:CDS
CTCAATATAGAGGTGTAACA+AGG 0.612520 tig0006422:-4548 Msa1343430:intron
GTTTCATCAAGAAGTAGTTG+AGG 0.620030 tig0006422:-2625 Msa1343430:CDS
AACATGCTGTCTAAGCTCAA+AGG 0.623476 tig0006422:+5050 Msa1343430:intergenic
GTGAAGGTCTTTCTCATACA+CGG 0.626154 tig0006422:-5862 Msa1343430:five_prime_UTR
AAATTATCAAAATCAACTTG+AGG 0.631469 tig0006422:-3718 Msa1343430:CDS
GGTAGCAGACACCATCAACA+TGG 0.639807 tig0006422:-3417 Msa1343430:intron
CCATGTACAGAGGAGTAACA+AGG 0.640756 tig0006422:-3546 Msa1343430:intron
GTAGAATAAAGCAAAAGTGA+AGG 0.641419 tig0006422:-5878 None:intergenic
ATTGCAGCTATAAAATTCAG+AGG 0.642745 tig0006422:-2957 Msa1343430:CDS
ATCTGAGGCAAAGAAAGGGA+AGG 0.647053 tig0006422:+2405 Msa1343430:intergenic
AGTTACTAAGAGGAGAAGAG+TGG 0.647916 tig0006422:+5396 Msa1343430:intergenic
ATACCCTTATATACTAACCA+AGG 0.651399 tig0006422:-5746 Msa1343430:five_prime_UTR
AAGGCCTAAGATGTTGTGAA+GGG 0.651408 tig0006422:+2424 Msa1343430:intergenic
CCTGTTGTAGAGGAAAATGA+AGG 0.654487 tig0006422:-4798 Msa1343430:CDS
CAAGCAGCACTCAAGTATTG+GGG 0.655625 tig0006422:-3874 Msa1343430:CDS
AGAGATCCATCAGATTTGAG+AGG 0.660630 tig0006422:+5311 Msa1343430:intergenic
CTTAGCAGGTCACAAACACA+AGG 0.664909 tig0006422:-5272 Msa1343430:intron
TGCTAGGTCTTCATTCTATG+GGG 0.667132 tig0006422:+5837 Msa1343430:intergenic
AGCTAGAAGGAACAAAGAGG+TGG 0.670383 tig0006422:-2850 Msa1343430:CDS
AAGCAGTGGATTCTCAAGAG+GGG 0.699895 tig0006422:-3572 Msa1343430:CDS
AGAGGGGCTTCCATGTACAG+AGG 0.703240 tig0006422:-3556 Msa1343430:CDS
AGCAGATGACATATTCTGTG+AGG 0.705618 tig0006422:+4680 Msa1343430:intergenic
ACTACTACATGCATAATGAG+GGG 0.710323 tig0006422:+5091 Msa1343430:intergenic
ACAAGCTAGAAGGAACAAAG+AGG 0.715606 tig0006422:-2853 Msa1343430:CDS
CATGTTATCCAAAGACACTG+AGG 0.754091 tig0006422:+2647 Msa1343420:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTATTAATTATATTTTAA+TGG + tig0006422:4433-4452 Msa1343430:intergenic 0.0%
!!! ATATTTTATTATATCAAAGT+TGG + tig0006422:5004-5023 Msa1343430:intergenic 10.0%
!!! ATTCTTTTTGTTTAGTTTAA+AGG - tig0006422:2123-2142 Msa1343430:three_prime_UTR 15.0%
!!! TATGTTTTGAATTGTTTATT+AGG - tig0006422:3474-3493 Msa1343430:intron 15.0%
!!! TTTTGACAAAAACTATATTT+TGG + tig0006422:3636-3655 Msa1343430:intergenic 15.0%
!! AACAAAATAAAAAATGAGAA+TGG + tig0006422:3788-3807 Msa1343430:intergenic 15.0%
!!! ATTCCAAAATTTTGATTTTA+GGG - tig0006422:3985-4004 Msa1343430:intron 15.0%
!! CAATTAATAAACCTTATAAA+TGG + tig0006422:4146-4165 Msa1343430:intergenic 15.0%
!! AGTACATTACAATATTAAAT+TGG + tig0006422:4641-4660 Msa1343430:intergenic 15.0%
!! AAATAGTAATTTGAATTCTT+GGG - tig0006422:5473-5492 Msa1343430:CDS 15.0%
!! ACATTAACAATGAAAATAAC+TGG - tig0006422:2377-2396 Msa1343430:CDS 20.0%
!! ATTATGTGTGTATTAATGTA+TGG - tig0006422:2694-2713 Msa1343430:CDS 20.0%
!! CACAAAAATAGATAAAAAGT+GGG + tig0006422:2747-2766 Msa1343430:intergenic 20.0%
!! TCACAAAAATAGATAAAAAG+TGG + tig0006422:2748-2767 Msa1343430:intergenic 20.0%
!!! TTTTTTAGGTAATGAAACTA+TGG - tig0006422:2804-2823 Msa1343430:CDS 20.0%
!!! TTTTTAGGTAATGAAACTAT+GGG - tig0006422:2805-2824 Msa1343430:CDS 20.0%
!!! TGTTTTGTTGAATTTGATTT+TGG + tig0006422:2897-2916 Msa1343430:intergenic 20.0%
!!! AAATTTTCATCAATCAAACA+TGG - tig0006422:3011-3030 Msa1343430:intron 20.0%
!!! AATTTTCATCAATCAAACAT+GGG - tig0006422:3012-3031 Msa1343430:intron 20.0%
!!! CATTCCAAAATTTTGATTTT+AGG - tig0006422:3984-4003 Msa1343430:intron 20.0%
!!! TTCCAAAATTTTGATTTTAG+GGG - tig0006422:3986-4005 Msa1343430:intron 20.0%
!!! AATGATTGTTATTACTAACA+GGG + tig0006422:4094-4113 Msa1343430:intergenic 20.0%
!!! TAATGATTGTTATTACTAAC+AGG + tig0006422:4095-4114 Msa1343430:intergenic 20.0%
!! TTGTTTCAATTCCATTTATA+AGG - tig0006422:4132-4151 Msa1343430:intron 20.0%
!! AAATTATCAAAATCAACTTG+AGG - tig0006422:4203-4222 Msa1343430:intron 20.0%
!!! CTTGGATTATATTTTTACTT+GGG + tig0006422:4859-4878 Msa1343430:intergenic 20.0%
!! ATATGATGTTGAAAAAATCA+TGG - tig0006422:5020-5039 Msa1343430:CDS 20.0%
!! CAAGAATTCAAATTACTATT+TGG + tig0006422:5474-5493 Msa1343430:intergenic 20.0%
!! CAAATAGTAATTTGAATTCT+TGG - tig0006422:5472-5491 Msa1343430:CDS 20.0%
!! CTAAAATGTAGTTACTAAAA+AGG + tig0006422:5803-5822 Msa1343430:intergenic 20.0%
!! AAAGGATTGTAAAATGTTTA+GGG + tig0006422:5843-5862 Msa1343430:intergenic 20.0%
!! TAAAGGATTGTAAAATGTTT+AGG + tig0006422:5844-5863 Msa1343430:intergenic 20.0%
! AGGGTATATGTATATCTAAA+GGG + tig0006422:2162-2181 Msa1343430:intergenic 25.0%
!! AAGGGTATATGTATATCTAA+AGG + tig0006422:2163-2182 Msa1343430:intergenic 25.0%
! ATCTATCTATAAACTCTCTT+TGG + tig0006422:2211-2230 Msa1343430:intergenic 25.0%
! GATAGATTTCATTACATTGT+TGG - tig0006422:2224-2243 Msa1343430:three_prime_UTR 25.0%
! AGACAAAAATATGAAGAGAA+TGG - tig0006422:2333-2352 Msa1343430:three_prime_UTR 25.0%
! AACAATGAAAATAACTGGTT+AGG - tig0006422:2382-2401 Msa1343430:CDS 25.0%
! TCTCCTCAAATGAATAATAT+TGG - tig0006422:2415-2434 Msa1343430:CDS 25.0%
! ACACCAATATTATTCATTTG+AGG + tig0006422:2421-2440 Msa1343430:intergenic 25.0%
! AGTAACTATTGTTACTCTTA+TGG - tig0006422:2541-2560 Msa1343430:CDS 25.0%
!!! CCTAAAAAATTCTCTAGTTT+TGG + tig0006422:2793-2812 Msa1343430:intergenic 25.0%
!!! CCAAAACTAGAGAATTTTTT+AGG - tig0006422:2790-2809 Msa1343430:CDS 25.0%
!!! TTTTAGGTAATGAAACTATG+GGG - tig0006422:2806-2825 Msa1343430:CDS 25.0%
! TATAATATGACAACTGTTGT+TGG + tig0006422:2927-2946 Msa1343430:intergenic 25.0%
!! AGGAAATCTATTGATACTTT+TGG - tig0006422:3339-3358 Msa1343430:intron 25.0%
! TTGAATTGTTTATTAGGCAT+AGG - tig0006422:3480-3499 Msa1343430:intron 25.0%
! AATGATACTATGTGAACATT+TGG - tig0006422:3584-3603 Msa1343430:intron 25.0%
!!! TTTGTTATTAGATTCTGTCT+TGG - tig0006422:3910-3929 Msa1343430:CDS 25.0%
!!! TTGCTTATGTTTTTAACATG+AGG - tig0006422:3940-3959 Msa1343430:intron 25.0%
!!! TCCAAAATTTTGATTTTAGG+GGG - tig0006422:3987-4006 Msa1343430:intron 25.0%
! TTTCATTCTCTTATAACAGT+TGG - tig0006422:4179-4198 Msa1343430:intron 25.0%
! AATATGTTGCTCATTTAAGA+AGG - tig0006422:4250-4269 Msa1343430:intron 25.0%
! GGTAATAAAGATCTATATCT+TGG - tig0006422:4558-4577 Msa1343430:CDS 25.0%
! TTAAATTGGTACATGATCAA+TGG + tig0006422:4627-4646 Msa1343430:intergenic 25.0%
!!! CCTTGGATTATATTTTTACT+TGG + tig0006422:4860-4879 Msa1343430:intergenic 25.0%
! CCAAGTAAAAATATAATCCA+AGG - tig0006422:4857-4876 Msa1343430:CDS 25.0%
!! CTCATTGAAATGAAACTTTT+AGG - tig0006422:4910-4929 Msa1343430:CDS 25.0%
! AATTTCAATGCAGAAGAATA+TGG - tig0006422:5170-5189 Msa1343430:intron 25.0%
!!! TCTTTCTTTTACTTTTTGCA+TGG - tig0006422:5624-5643 Msa1343430:five_prime_UTR 25.0%
! AATATGTAAGAAATGGTGAT+GGG - tig0006422:5653-5672 Msa1343430:five_prime_UTR 25.0%
!!! TTTTACAATCCTTTAAGACA+TGG - tig0006422:5849-5868 Msa1343430:five_prime_UTR 25.0%
ATACCCTTATATACTAACCA+AGG - tig0006422:2175-2194 Msa1343430:three_prime_UTR 30.0%
GTTGGTTAGATACTTAGATA+TGG - tig0006422:2242-2261 Msa1343430:three_prime_UTR 30.0%
GAGTAACAATAGTTACTAAG+AGG + tig0006422:2538-2557 Msa1343430:intergenic 30.0%
! TGATGGATCTCTTTATGAAA+TGG - tig0006422:2621-2640 Msa1343430:CDS 30.0%
TACTACTACATGCATAATGA+GGG + tig0006422:2834-2853 Msa1343430:intergenic 30.0%
ACTTAGTGGTTTAAAGAACT+GGG - tig0006422:3047-3066 Msa1343430:intron 30.0%
! GTTTAAAGAACTGGGTTTTA+AGG - tig0006422:3055-3074 Msa1343430:intron 30.0%
ATAAGCCATTGAACCAATAT+TGG + tig0006422:3160-3179 Msa1343430:intergenic 30.0%
!! AATATTGGTTCAATGGCTTA+TGG - tig0006422:3159-3178 Msa1343430:intron 30.0%
TGTTGAAAATTCTGTTGCTA+TGG - tig0006422:3266-3285 Msa1343430:intron 30.0%
CAAAGAACATCTCAATATAG+AGG - tig0006422:3363-3382 Msa1343430:CDS 30.0%
AATTGTTTATTAGGCATAGG+TGG - tig0006422:3483-3502 Msa1343430:intron 30.0%
!!! TGTTTTTTGCTTTCTTTGCT+TGG - tig0006422:3804-3823 Msa1343430:intron 30.0%
! ACCCCCTAAAATCAAAATTT+TGG + tig0006422:3991-4010 Msa1343430:intergenic 30.0%
TGGAATTGAAACAAAAGACA+TGG + tig0006422:4126-4145 Msa1343430:intergenic 30.0%
AATGAAGAATATGACAAGAC+AGG - tig0006422:4227-4246 Msa1343430:intron 30.0%
CTTTCAAAATCTTGTTCACT+TGG - tig0006422:4483-4502 Msa1343430:intron 30.0%
! TTTAACTTTCATGCTAACCT+TGG + tig0006422:4877-4896 Msa1343430:intergenic 30.0%
! TTTTATAGCTGCAATGTCAT+AGG + tig0006422:4959-4978 Msa1343430:intergenic 30.0%
ATTGCAGCTATAAAATTCAG+AGG - tig0006422:4964-4983 Msa1343430:CDS 30.0%
GTTCTTTCATTCTCAAATCT+TGG + tig0006422:5240-5259 Msa1343430:intergenic 30.0%
TGTATCAAATGCTTCTTCAT+TGG - tig0006422:5341-5360 Msa1343430:CDS 30.0%
!!! AATAGTTTTGAAGCTGTTGA+AGG + tig0006422:5438-5457 Msa1343430:intergenic 30.0%
TTCAACAGCTTCAAAACTAT+TGG - tig0006422:5437-5456 Msa1343430:CDS 30.0%
GTGATAGAGAACAAAAGAAA+GGG + tig0006422:5574-5593 Msa1343430:intergenic 30.0%
TGTGATAGAGAACAAAAGAA+AGG + tig0006422:5575-5594 Msa1343430:intergenic 30.0%
!!! TTCTTTTACTTTTTGCATGG+AGG - tig0006422:5627-5646 Msa1343430:five_prime_UTR 30.0%
!!! TCTTTTACTTTTTGCATGGA+GGG - tig0006422:5628-5647 Msa1343430:five_prime_UTR 30.0%
CAATATGTAAGAAATGGTGA+TGG - tig0006422:5652-5671 Msa1343430:five_prime_UTR 30.0%
ATGGGAGATAGTAAAATTGA+GGG - tig0006422:5671-5690 Msa1343430:five_prime_UTR 30.0%
TCTACAATACCATGTCTTAA+AGG + tig0006422:5861-5880 Msa1343430:intergenic 30.0%
ATGCTAGGTCTTCATTCTAT+GGG + tig0006422:2088-2107 Msa1343430:intergenic 35.0%
AATGCTAGGTCTTCATTCTA+TGG + tig0006422:2089-2108 Msa1343430:intergenic 35.0%
GTGCCTTGGTTAGTATATAA+GGG + tig0006422:2181-2200 Msa1343430:intergenic 35.0%
TGTGCCTTGGTTAGTATATA+AGG + tig0006422:2182-2201 Msa1343430:intergenic 35.0%
! TCAGATTTGAGAGGCATAAT+GGG + tig0006422:2604-2623 Msa1343430:intergenic 35.0%
! ATCAGATTTGAGAGGCATAA+TGG + tig0006422:2605-2624 Msa1343430:intergenic 35.0%
ATTATGCCTCTCAAATCTGA+TGG - tig0006422:2604-2623 Msa1343430:CDS 35.0%
ACTACTACATGCATAATGAG+GGG + tig0006422:2833-2852 Msa1343430:intergenic 35.0%
GTACTACTACATGCATAATG+AGG + tig0006422:2835-2854 Msa1343430:intergenic 35.0%
!! AACCATGAGTTGATGTTAGA+AGG - tig0006422:2961-2980 Msa1343430:CDS 35.0%
!! ACCATGAGTTGATGTTAGAA+GGG - tig0006422:2962-2981 Msa1343430:CDS 35.0%
AAGCAAAGTCAAACTTCAAG+TGG - tig0006422:2988-3007 Msa1343430:CDS 35.0%
GACTTAGTGGTTTAAAGAAC+TGG - tig0006422:3046-3065 Msa1343430:intron 35.0%
!! TGGATCCAATATTGGTTCAA+TGG - tig0006422:3152-3171 Msa1343430:intron 35.0%
GCTATGGATACAAAGAAAAG+AGG - tig0006422:3282-3301 Msa1343430:intron 35.0%
AGCAGAAGCAAATTGTTCAT+AGG - tig0006422:3319-3338 Msa1343430:intron 35.0%
! CTCAATATAGAGGTGTAACA+AGG - tig0006422:3373-3392 Msa1343430:CDS 35.0%
GAGATATGAAGCTCATCTAT+GGG - tig0006422:3511-3530 Msa1343430:intron 35.0%
! TTTTTGCTTTCTTTGCTTGG+CGG - tig0006422:3807-3826 Msa1343430:intron 35.0%
TGATGAGACACAGTTTATCT+TGG - tig0006422:3855-3874 Msa1343430:CDS 35.0%
!! GATTTTAGGGGGTTATGATA+TGG - tig0006422:3998-4017 Msa1343430:intron 35.0%
GATCTTATCAGAAAAAGCAG+TGG - tig0006422:4335-4354 Msa1343430:intron 35.0%
GTGAGTTCTTTCATACTCTT+TGG - tig0006422:4589-4608 Msa1343430:CDS 35.0%
TGTAATGTACTAGACACATG+TGG - tig0006422:4650-4669 Msa1343430:CDS 35.0%
ATGTTCTGTTCCAATGTTTG+TGG - tig0006422:4822-4841 Msa1343430:CDS 35.0%
TGTTCTGTTCCAATGTTTGT+GGG - tig0006422:4823-4842 Msa1343430:CDS 35.0%
!! AATTTTGACCCCACAAACAT+TGG + tig0006422:4835-4854 Msa1343430:intergenic 35.0%
!! GAAACTTTTAGGTACTCAAG+AGG - tig0006422:4921-4940 Msa1343430:CDS 35.0%
!! TAGCTTGTTCAATGTTGAGA+AGG + tig0006422:5056-5075 Msa1343430:intergenic 35.0%
TCAACATTGAACAAGCTAGA+AGG - tig0006422:5058-5077 Msa1343430:CDS 35.0%
TTGTTGTCATATGCAGAAGA+AGG + tig0006422:5135-5154 Msa1343430:intergenic 35.0%
CTGTTGAAGTTGTTGATGTT+GGG + tig0006422:5211-5230 Msa1343430:intergenic 35.0%
TCTGTTGAAGTTGTTGATGT+TGG + tig0006422:5212-5231 Msa1343430:intergenic 35.0%
!! AACTTTTTCCTCAGTGTCTT+TGG - tig0006422:5266-5285 Msa1343430:intron 35.0%
GTTTCATCAAGAAGTAGTTG+AGG - tig0006422:5296-5315 Msa1343430:CDS 35.0%
!! TTTTGCAAGCTTGTTCTATC+TGG + tig0006422:5399-5418 Msa1343430:intergenic 35.0%
GAGGGACAATATGTAAGAAA+TGG - tig0006422:5646-5665 Msa1343430:five_prime_UTR 35.0%
GATGGGAGATAGTAAAATTG+AGG - tig0006422:5670-5689 Msa1343430:five_prime_UTR 35.0%
GTGAAGGTCTTTCTCATACA+CGG - tig0006422:2059-2078 Msa1343430:three_prime_UTR 40.0%
TGCTAGGTCTTCATTCTATG+GGG + tig0006422:2087-2106 Msa1343430:intergenic 40.0%
!!! TCTTTGGTTTTTGTGTGCCT+TGG + tig0006422:2195-2214 Msa1343430:intergenic 40.0%
! TGGTAAAAGCTTGCTTGAAG+TGG + tig0006422:2508-2527 Msa1343430:intergenic 40.0%
AGTTACTAAGAGGAGAAGAG+TGG + tig0006422:2528-2547 Msa1343430:intergenic 40.0%
GGACTTGAACATGAAAATGC+TGG - tig0006422:2562-2581 Msa1343430:CDS 40.0%
AGAGATCCATCAGATTTGAG+AGG + tig0006422:2613-2632 Msa1343430:intergenic 40.0%
ATGAAATGGAAGCTCTTAGC+AGG - tig0006422:2635-2654 Msa1343430:CDS 40.0%
AACATGCTGTCTAAGCTCAA+AGG + tig0006422:2874-2893 Msa1343430:intergenic 40.0%
ACCCTTCTAACATCAACTCA+TGG + tig0006422:2966-2985 Msa1343430:intergenic 40.0%
TCAAACATGGGTGAAGATCA+TGG - tig0006422:3024-3043 Msa1343430:intron 40.0%
! AGGAATTTTCCAGCTAGTCA+TGG - tig0006422:3075-3094 Msa1343430:intron 40.0%
GATGATTGTTCCTGTTGTAG+AGG - tig0006422:3113-3132 Msa1343430:intron 40.0%
! CCTTCATTTTCCTCTACAAC+AGG + tig0006422:3126-3145 Msa1343430:intergenic 40.0%
CCTGTTGTAGAGGAAAATGA+AGG - tig0006422:3123-3142 Msa1343430:intron 40.0%
GAGGAAAATGAAGGTGAATG+TGG - tig0006422:3132-3151 Msa1343430:intron 40.0%
GGTGAATGTGGATCCAATAT+TGG - tig0006422:3144-3163 Msa1343430:intron 40.0%
AGCAGATGACATATTCTGTG+AGG + tig0006422:3244-3263 Msa1343430:intergenic 40.0%
TTTATTAGGCATAGGTGGAC+TGG - tig0006422:3488-3507 Msa1343430:intron 40.0%
! TTATTAGGCATAGGTGGACT+GGG - tig0006422:3489-3508 Msa1343430:intron 40.0%
GGAGATATGAAGCTCATCTA+TGG - tig0006422:3510-3529 Msa1343430:intron 40.0%
GACAACAGTTGCAAGAAAGA+AGG - tig0006422:3533-3552 Msa1343430:intron 40.0%
AAAGAAGGCCAAAGCAGAAA+AGG - tig0006422:3548-3567 Msa1343430:CDS 40.0%
! CTTGTCTTCCTTTTCTGCTT+TGG + tig0006422:3559-3578 Msa1343430:intergenic 40.0%
CAAAGCAGAAAAGGAAGACA+AGG - tig0006422:3557-3576 Msa1343430:CDS 40.0%
! GGATTCACACGATGATTTTG+CGG - tig0006422:3605-3624 Msa1343430:intron 40.0%
! TTTTGCTTTCTTTGCTTGGC+GGG - tig0006422:3808-3827 Msa1343430:intron 40.0%
ATCAAGCAGCACTCAAGTAT+TGG - tig0006422:4045-4064 Msa1343430:intron 40.0%
TCAAGCAGCACTCAAGTATT+GGG - tig0006422:4046-4065 Msa1343430:intron 40.0%
AACAGGGAAGTTTATGTGAG+TGG + tig0006422:4078-4097 Msa1343430:intergenic 40.0%
! AAAAGCAGTGGATTCTCAAG+AGG - tig0006422:4347-4366 Msa1343430:intron 40.0%
! AAAGCAGTGGATTCTCAAGA+GGG - tig0006422:4348-4367 Msa1343430:intron 40.0%
! GAGGAGTAACAAGGTCTTAT+AGG - tig0006422:4384-4403 Msa1343430:CDS 40.0%
CATTAGACATGACACTGACA+CGG + tig0006422:4713-4732 Msa1343430:intergenic 40.0%
GTTCTGTTCCAATGTTTGTG+GGG - tig0006422:4824-4843 Msa1343430:CDS 40.0%
ACAAGCTAGAAGGAACAAAG+AGG - tig0006422:5068-5087 Msa1343430:CDS 40.0%
TTGAAGTTGTTGATGTTGGG+AGG + tig0006422:5208-5227 Msa1343430:intergenic 40.0%
CATGTTATCCAAAGACACTG+AGG + tig0006422:5277-5296 Msa1343430:intergenic 40.0%
AGTTTGAGCAGTTCAAGAGA+AGG - tig0006422:5369-5388 Msa1343430:CDS 40.0%
ACAAGCTTGCAAAATCTCTC+TGG - tig0006422:5405-5424 Msa1343430:CDS 40.0%
AAGGCCTAAGATGTTGTGAA+GGG + tig0006422:5500-5519 Msa1343430:intergenic 40.0%
TTGTGTCAAAGCATGTTTCG+AGG - tig0006422:5759-5778 Msa1343430:five_prime_UTR 40.0%
GTATTCCAGCAAGCAATGCT+AGG + tig0006422:2103-2122 Msa1343430:intergenic 45.0%
CTTAGCAGGTCACAAACACA+AGG - tig0006422:2649-2668 Msa1343430:CDS 45.0%
GGTGAAGATCATGGACTTAG+TGG - tig0006422:3033-3052 Msa1343430:intron 45.0%
TGATCATGTCCATGACTAGC+TGG + tig0006422:3087-3106 Msa1343430:intergenic 45.0%
! TCACACGATGATTTTGCGGA+CGG - tig0006422:3609-3628 Msa1343430:intron 45.0%
TTTGCTTTCTTTGCTTGGCG+GGG - tig0006422:3809-3828 Msa1343430:intron 45.0%
! CAAGCAGCACTCAAGTATTG+GGG - tig0006422:4047-4066 Msa1343430:intron 45.0%
GGGAAGTTTATGTGAGTGGA+TGG + tig0006422:4074-4093 Msa1343430:intergenic 45.0%
! AAGCAGTGGATTCTCAAGAG+GGG - tig0006422:4349-4368 Msa1343430:intron 45.0%
CCTTGTTACTCCTCTGTACA+TGG + tig0006422:4378-4397 Msa1343430:intergenic 45.0%
CCATGTACAGAGGAGTAACA+AGG - tig0006422:4375-4394 Msa1343430:CDS 45.0%
GACACCATCAACATGGAAGA+TGG - tig0006422:4511-4530 Msa1343430:intron 45.0%
CTTGCCATCTTCCATGTTGA+TGG + tig0006422:4518-4537 Msa1343430:intergenic 45.0%
TATACGCGCACAACTACTAG+CGG + tig0006422:4778-4797 Msa1343430:intergenic 45.0%
AGCTAGAAGGAACAAAGAGG+TGG - tig0006422:5071-5090 Msa1343430:CDS 45.0%
GAAGGCCTAAGATGTTGTGA+AGG + tig0006422:5501-5520 Msa1343430:intergenic 45.0%
! ATCTGAGGCAAAGAAAGGGA+AGG + tig0006422:5519-5538 Msa1343430:intergenic 45.0%
! TGGCATCTGAGGCAAAGAAA+GGG + tig0006422:5523-5542 Msa1343430:intergenic 45.0%
! AGATGCCAGTTTTTGCAGCA+TGG - tig0006422:5535-5554 Msa1343430:CDS 45.0%
TCTGTCCATGCTGCAAAAAC+TGG + tig0006422:5543-5562 Msa1343430:intergenic 45.0%
GAAGACCTAGCATTGCTTGC+TGG - tig0006422:2095-2114 Msa1343430:three_prime_UTR 50.0%
GCAGAAGCAGAAGCAGAAGA+AGG + tig0006422:2472-2491 Msa1343430:intergenic 50.0%
ACACAGCTAGACTGAGAGCT+AGG + tig0006422:3216-3235 Msa1343430:intergenic 50.0%
GGTAGCAGACACCATCAACA+TGG - tig0006422:4504-4523 Msa1343430:intron 50.0%
GGAAGATGGCAAGCTCGAAT+TGG - tig0006422:4525-4544 Msa1343430:intron 50.0%
GCTCGAATTGGTAGAGTAGC+TGG - tig0006422:4537-4556 Msa1343430:intron 50.0%
GGGACCCTTCACAACATCTT+AGG - tig0006422:5493-5512 Msa1343430:CDS 50.0%
! CTGGCATCTGAGGCAAAGAA+AGG + tig0006422:5524-5543 Msa1343430:intergenic 50.0%
GCTGCAAAAACTGGCATCTG+AGG + tig0006422:5534-5553 Msa1343430:intergenic 50.0%
AGAGGGGCTTCCATGTACAG+AGG - tig0006422:4365-4384 Msa1343430:CDS 55.0%
Chromosome Type Strat End Strand Name
tig0006422 gene 2052 5891 2052 ID=Msa1343430;Name=Msa1343430
tig0006422 mRNA 2052 5891 2052 ID=Msa1343430-mRNA-1;Parent=Msa1343430;Name=Msa1343430-mRNA-1;_AED=0.12;_eAED=0.12;_QI=291|0.85|1|1|1|1|8|322|654
tig0006422 exon 2052 3011 2052 ID=Msa1343430-mRNA-1:exon:4149;Parent=Msa1343430-mRNA-1
tig0006422 exon 3355 3431 3355 ID=Msa1343430-mRNA-1:exon:4148;Parent=Msa1343430-mRNA-1
tig0006422 exon 3547 3597 3547 ID=Msa1343430-mRNA-1:exon:4147;Parent=Msa1343430-mRNA-1
tig0006422 exon 3672 3745 3672 ID=Msa1343430-mRNA-1:exon:4146;Parent=Msa1343430-mRNA-1
tig0006422 exon 3849 3937 3849 ID=Msa1343430-mRNA-1:exon:4145;Parent=Msa1343430-mRNA-1
tig0006422 exon 4365 4447 4365 ID=Msa1343430-mRNA-1:exon:4144;Parent=Msa1343430-mRNA-1
tig0006422 exon 4549 5173 4549 ID=Msa1343430-mRNA-1:exon:4143;Parent=Msa1343430-mRNA-1
tig0006422 exon 5273 5891 5273 ID=Msa1343430-mRNA-1:exon:4142;Parent=Msa1343430-mRNA-1
tig0006422 five_prime_UTR 5601 5891 5601 ID=Msa1343430-mRNA-1:five_prime_utr;Parent=Msa1343430-mRNA-1
tig0006422 CDS 5273 5600 5273 ID=Msa1343430-mRNA-1:cds;Parent=Msa1343430-mRNA-1
tig0006422 CDS 4549 5173 4549 ID=Msa1343430-mRNA-1:cds;Parent=Msa1343430-mRNA-1
tig0006422 CDS 4365 4447 4365 ID=Msa1343430-mRNA-1:cds;Parent=Msa1343430-mRNA-1
tig0006422 CDS 3849 3937 3849 ID=Msa1343430-mRNA-1:cds;Parent=Msa1343430-mRNA-1
tig0006422 CDS 3672 3745 3672 ID=Msa1343430-mRNA-1:cds;Parent=Msa1343430-mRNA-1
tig0006422 CDS 3547 3597 3547 ID=Msa1343430-mRNA-1:cds;Parent=Msa1343430-mRNA-1
tig0006422 CDS 3355 3431 3355 ID=Msa1343430-mRNA-1:cds;Parent=Msa1343430-mRNA-1
tig0006422 CDS 2374 3011 2374 ID=Msa1343430-mRNA-1:cds;Parent=Msa1343430-mRNA-1
tig0006422 three_prime_UTR 2052 2373 2052 ID=Msa1343430-mRNA-1:three_prime_utr;Parent=Msa1343430-mRNA-1
Gene Sequence

>Msa1343430

ATGAAGAGAATGGAAAACAATGATGATAGTGTTGACATTAACAATGAAAATAACTGGTTAGGTTTTTCACTCTCTCCTCAAATGAATAATATTGGTGTTACTTCACACACTCATCATCATTCACTGCCTTCTTCTGCTTCTGCTTCTGCTTCTGAAGTAGTTCCACTTCAAGCAAGCTTTTACCACTCTTCTCCTCTTAGTAACTATTGTTACTCTTATGGACTTGAACATGAAAATGCTGGCTTGTATTCATTACTTCCCATTATGCCTCTCAAATCTGATGGATCTCTTTATGAAATGGAAGCTCTTAGCAGGTCACAAACACAAGCAATGAGTACTACTTCAGCACCAAAACTAGAGAATTTTTTAGGTAATGAAACTATGGGGACCCCTCATTATGCATGTAGTAGTACTGTCACAGAAACAATGCCTTTGAGCTTAGACAGCATGTTCCAAAATCAAATTCAACAAAACATGAACAACCAACAACAGTTGTCATATTATAACTCAACTATGAGAAACCATGAGTTGATGTTAGAAGGGTCAAAGCAAAGTCAAACTTCAAGTGGAAATTTTCATCAATCAAACATGGGTGAAGATCATGGACTTAGTGGTTTAAAGAACTGGGTTTTAAGGAATTTTCCAGCTAGTCATGGACATGATCAGTCAAAGATGATTGTTCCTGTTGTAGAGGAAAATGAAGGTGAATGTGGATCCAATATTGGTTCAATGGCTTATGGAGATTTGCATTCTTTGAGTTTGTCAATGAGTCCTAGCTCTCAGTCTAGCTGTGTTACAACCTCACAGAATATGTCATCTGCTGTTGTTGAAAATTCTGTTGCTATGGATACAAAGAAAAGAGGAAGTGAAAAATTTGAGCAGAAGCAAATTGTTCATAGGAAATCTATTGATACTTTTGGTCAAAGAACATCTCAATATAGAGGTGTAACAAGGCATAGGTGGACTGGGAGATATGAAGCTCATCTATGGGACAACAGTTGCAAGAAAGAAGGCCAAAGCAGAAAAGGAAGACAAGGGGGTTATGATATGGAAGAAAAAGCTGCTAGAGCTTATGATCAAGCAGCACTCAAGTATTGGGGACCATCCACTCACATAAACTTCCCTTTGGAAAATTATCAAAATCAACTTGAGGAAATGAAGAATATGACAAGACAGGAATATGTTGCTCATTTAAGAAGAAAAAGCAGTGGATTCTCAAGAGGGGCTTCCATGTACAGAGGAGTAACAAGACACCATCAACATGGAAGATGGCAAGCTCGAATTGGTAGAGTAGCTGGTAATAAAGATCTATATCTTGGAACTTTCAGTACTCAAGAGGAAGCAGCTGAAGCCTATGACATTGCAGCTATAAAATTCAGAGGAGCAAATGCAGTGACCAACTTTGATATAATAAAATATGATGTTGAAAAAATCATGGCTAGTAGTAACCTTCTCAACATTGAACAAGCTAGAAGGAACAAAGAGGTGGTAGATATTACTACAACTCAGTACATTGATCAAAACAAGCCTTCTTCTGCATATGACAACAATAGCACTCAAGAAGCAATTTCAATGCAGAAGAATATGGTTCTGTATCAATCCTCCCAACATCAACAACTTCAACAGAATCAACCAAGATTTGAGAATGAAAGAACTCATCAAACTTTTTCCTCAGTGTCTTTGGATAACATGTTTCATCAAGAAGTAGTTGAGGAAGCAAGTAAGATGAGAACACATGTATCAAATGCTTCTTCATTGGCTACAAGTTTGAGCAGTTCAAGAGAAGGTAGTCCAGATAGAACAAGCTTGCAAAATCTCTCTGGAATAATGCCTTCAACAGCTTCAAAACTATTGGTTACTTCTGCTCCAAATAGTAATTTGAATTCTTGGGACCCTTCACAACATCTTAGGCCTTCCCTTTCTTTGCCTCAGATGCCAGTTTTTGCAGCATGGACAGATGCTTAG

Protein sequence

>Msa1343430

MKRMENNDDSVDINNENNWLGFSLSPQMNNIGVTSHTHHHSLPSSASASASEVVPLQASFYHSSPLSNYCYSYGLEHENAGLYSLLPIMPLKSDGSLYEMEALSRSQTQAMSTTSAPKLENFLGNETMGTPHYACSSTVTETMPLSLDSMFQNQIQQNMNNQQQLSYYNSTMRNHELMLEGSKQSQTSSGNFHQSNMGEDHGLSGLKNWVLRNFPASHGHDQSKMIVPVVEENEGECGSNIGSMAYGDLHSLSLSMSPSSQSSCVTTSQNMSSAVVENSVAMDTKKRGSEKFEQKQIVHRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQSRKGRQGGYDMEEKAARAYDQAALKYWGPSTHINFPLENYQNQLEEMKNMTRQEYVAHLRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGANAVTNFDIIKYDVEKIMASSNLLNIEQARRNKEVVDITTTQYIDQNKPSSAYDNNSTQEAISMQKNMVLYQSSQHQQLQQNQPRFENERTHQTFSSVSLDNMFHQEVVEEASKMRTHVSNASSLATSLSSSREGSPDRTSLQNLSGIMPSTASKLLVTSAPNSNLNSWDPSQHLRPSLSLPQMPVFAAWTDA*