AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0167520

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0167520 MtrunA17_Chr1g0183311 93.205 883 59 1 1 883 1 882 0.0 1638
Msa0167520 MtrunA17_Chr1g0211711 79.328 774 113 6 120 883 315 1051 0.0 1260
Msa0167520 MtrunA17_Chr5g0426961 67.799 795 187 7 100 882 97 834 0.0 1064
Msa0167520 MtrunA17_Chr1g0211691 68.541 747 176 8 44 771 239 945 0.0 998
Msa0167520 MtrunA17_Chr1g0211661 69.120 693 169 5 131 823 218 865 0.0 973
Msa0167520 MtrunA17_Chr5g0420361 68.835 661 183 8 208 864 138 779 0.0 910
Msa0167520 MtrunA17_Chr6g0472441 64.296 689 193 12 208 890 80 721 0.0 857
Msa0167520 MtrunA17_Chr7g0275771 43.277 885 399 24 92 888 61 930 0.0 665
Msa0167520 MtrunA17_Chr5g0448301 59.893 561 166 4 234 793 129 631 0.0 649
Msa0167520 MtrunA17_Chr4g0075261 47.122 747 334 15 145 880 168 864 0.0 640
Msa0167520 MtrunA17_Chr2g0289121 47.568 740 310 13 144 880 155 819 0.0 622
Msa0167520 MtrunA17_Chr1g0192011 37.698 756 397 20 145 884 267 964 6.62e-147 463
Msa0167520 MtrunA17_Chr2g0289031 51.508 431 162 3 452 880 8 393 1.25e-140 427
Msa0167520 MtrunA17_Chr1g0147021 45.506 534 254 11 141 670 866 1366 9.17e-131 434
Msa0167520 MtrunA17_Chr1g0147021 65.605 157 51 1 736 889 1551 1707 3.35e-58 219
Msa0167520 MtrunA17_Chr2g0281051 34.839 775 441 16 145 881 207 955 4.50e-129 415
Msa0167520 MtrunA17_Chr2g0289091 47.368 399 130 10 526 845 23 420 1.21e-99 320
Msa0167520 MtrunA17_Chr4g0048531 37.077 561 296 14 368 881 727 1277 1.85e-96 332
Msa0167520 MtrunA17_Chr4g0048531 33.971 209 120 6 140 339 255 454 2.18e-27 120
Msa0167520 MtrunA17_Chr8g0364421 50.195 257 96 4 255 511 5 229 9.51e-70 232
Msa0167520 MtrunA17_Chr1g0211701 64.238 151 54 0 769 919 4 154 1.08e-62 209
Msa0167520 MtrunA17_Chr8g0340381 69.822 169 32 3 547 715 36 185 8.95e-61 205
Msa0167520 MtrunA17_Chr7g0231061 61.585 164 63 0 513 676 12 175 3.79e-59 201
Msa0167520 MtrunA17_Chr8g0361381 51.337 187 87 1 448 634 26 208 6.84e-58 198
Msa0167520 MtrunA17_Chr2g0289041 41.038 212 115 4 167 377 2 204 8.39e-43 155
Msa0167520 MtrunA17_Chr8g0361391 77.528 89 19 1 735 823 50 137 1.53e-42 152
Msa0167520 MtrunA17_Chr8g0364411 50.350 143 65 2 114 256 8 144 3.49e-37 137
Msa0167520 MtrunA17_Chr1g0211671 77.778 63 14 0 822 884 15 77 7.67e-28 109
Msa0167520 MtrunA17_Chr3g0119761 62.338 77 29 0 620 696 55 131 4.59e-22 93.2
Msa0167520 MtrunA17_Chr2g0289101 38.095 147 81 5 277 419 8 148 3.52e-16 77.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0167520 AT3G07610.1 43.833 908 388 11 28 872 35 883 0.0 714
Msa0167520 AT3G07610.3 42.611 927 394 12 28 872 35 905 0.0 692
Msa0167520 AT1G11950.1 48.725 745 312 13 145 884 193 872 0.0 687
Msa0167520 AT1G11950.3 48.725 745 312 13 145 884 193 872 0.0 687
Msa0167520 AT1G62310.1 49.108 729 313 11 145 869 209 883 0.0 681
Msa0167520 AT4G00990.1 43.974 780 367 16 143 880 78 829 0.0 604
Msa0167520 AT1G11950.2 46.588 674 290 13 145 813 193 801 0.0 583
Msa0167520 AT4G00990.3 42.798 729 347 16 143 829 78 778 1.62e-177 537
Msa0167520 AT4G00990.2 43.135 721 340 16 143 821 78 770 1.94e-176 534
Msa0167520 AT3G07610.2 40.237 676 321 9 28 640 35 690 5.34e-152 470
Msa0167520 AT1G09060.2 32.372 763 419 18 145 884 206 894 5.61e-115 377
Msa0167520 AT1G09060.1 32.372 763 419 18 145 884 206 894 5.61e-115 377
Msa0167520 AT1G09060.4 32.372 763 419 18 145 884 220 908 1.07e-114 377
Msa0167520 AT1G09060.3 32.372 763 419 18 145 884 220 908 1.07e-114 377
Msa0167520 AT4G21430.1 30.615 748 455 12 141 881 223 913 4.35e-98 331

Find 237 sgRNAs with CRISPR-Local

Find 807 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCATGGTCATTGTTGGTTTC+TGG 0.066287 1_4:-49430282 None:intergenic
TTTAAATATTCTTCCAATTT+AGG 0.124269 1_4:-49433556 None:intergenic
GACACAATTAATGAAAATTT+TGG 0.148879 1_4:+49441266 Msa0167520:CDS
AGTACATTGCTGACAATTAT+AGG 0.182829 1_4:-49431427 None:intergenic
TGATAAAGAAAATAGTTTAT+TGG 0.211724 1_4:+49433477 Msa0167520:CDS
ATGTCTGTCATTCAATTTAC+AGG 0.214834 1_4:+49435976 Msa0167520:CDS
TTGCTCGTATGAAGCCTTTA+TGG 0.217000 1_4:-49433380 None:intergenic
TCATACTCGTCTTTAATTTC+AGG 0.227847 1_4:+49428521 Msa0167520:five_prime_UTR
TCACAGCTTTAAACATAATA+AGG 0.229078 1_4:-49428559 None:intergenic
GCTATGGTTTCTTGATTATC+AGG 0.232645 1_4:-49428752 None:intergenic
AATTTGCACCAATTCTTTAC+TGG 0.236831 1_4:+49432374 Msa0167520:CDS
TGTTTGTAGTGTTTGAAAAT+TGG 0.263463 1_4:-49428632 None:intergenic
GAGAGAGGATGTACCTAAAT+TGG 0.270507 1_4:+49433543 Msa0167520:CDS
GTCCTTATTGGTCTGTAATA+AGG 0.273383 1_4:+49429205 Msa0167520:CDS
TCTGCAGACTTGTGATTTAC+TGG 0.286546 1_4:-49435178 None:intergenic
TTTCTGCCACGTTTCTTTGC+CGG 0.291268 1_4:-49428812 None:intergenic
AGTGTTCGATTTGTGGAAAA+TGG 0.293306 1_4:+49433406 Msa0167520:CDS
TGAAGTGAAGCTGGATTCTA+AGG 0.294563 1_4:+49433240 Msa0167520:CDS
ACAGCATCCTGGACATTTCT+TGG 0.294851 1_4:-49430113 None:intergenic
GATTGAAGATGTGTCCTTAT+TGG 0.294904 1_4:+49429193 Msa0167520:CDS
TCACAATCATCATCGGCTTT+TGG 0.295247 1_4:-49431115 None:intergenic
CTTCGTGGTGGGAAGCTTCT+AGG 0.295572 1_4:+49430917 Msa0167520:CDS
CTCGCCTGGACTGGCTTAAT+TGG 0.302310 1_4:+49432408 Msa0167520:CDS
AAAGTTTATAACGTTATTAT+CGG 0.305847 1_4:+49428478 Msa0167520:five_prime_UTR
AACTATTATGAACCGGAATA+TGG 0.307301 1_4:+49441106 Msa0167520:CDS
TGTTGCTGTTCAATGCATTC+AGG 0.310113 1_4:-49429049 None:intergenic
GCTGGAACTGAAGAAGATTA+AGG 0.321087 1_4:+49428946 Msa0167520:CDS
TATGTTATACCTTCAGATTT+CGG 0.328391 1_4:-49434657 None:intergenic
TAATTCATCTTCTTCCATAA+AGG 0.328727 1_4:+49433366 Msa0167520:CDS
GCAAAATAGTGTTCGATTTG+TGG 0.335906 1_4:+49433399 Msa0167520:CDS
AAGAAAATAGTTTATTGGTT+GGG 0.336358 1_4:+49433482 Msa0167520:CDS
TTTGTCTCTCCTGAAAATAT+TGG 0.339057 1_4:+49435118 Msa0167520:CDS
TCTGGCTGTAAAACATCTTT+AGG 0.339519 1_4:-49432578 None:intergenic
ATTATCAAGCATGTCAATCT+TGG 0.359732 1_4:-49433347 None:intergenic
AGAAGCATTTCAGAGAGTTC+AGG 0.360974 1_4:+49433578 Msa0167520:CDS
AACGGAGAAGGAAGCCGAAA+AGG 0.363667 1_4:+49428841 Msa0167520:CDS
TTATCAACTTCTTTGAGCTC+TGG 0.364253 1_4:-49433460 None:intergenic
CTTTCCTCAAATAAATTAGA+AGG 0.368022 1_4:-49432461 None:intergenic
GCATTGGGGTTACCATATTC+CGG 0.374805 1_4:-49441118 None:intergenic
TATTCCGGTTCATAATAGTT+TGG 0.377958 1_4:-49441103 None:intergenic
ACAAATACAAAATGTGGATA+TGG 0.378163 1_4:+49441295 Msa0167520:CDS
AAGAGGCTTAAGGAGGAGTA+TGG 0.382059 1_4:+49434462 Msa0167520:CDS
ATTCTTTAGACGGTGCTCTC+TGG 0.384591 1_4:+49433509 Msa0167520:CDS
AGAAAATAGTTTATTGGTTG+GGG 0.387608 1_4:+49433483 Msa0167520:CDS
TATGGATTTGCTCAGGAGCT+TGG 0.388333 1_4:+49432626 Msa0167520:CDS
GTGCTCTCTGGGATATCTTT+CGG 0.394357 1_4:+49433521 Msa0167520:CDS
TGTCATTCAATTTACAGGTC+TGG 0.397470 1_4:+49435981 Msa0167520:CDS
GGGAGCTACATGGTGATAAT+CGG 0.399614 1_4:+49433314 Msa0167520:CDS
GCCTCCTTCTAATTTATTTG+AGG 0.400880 1_4:+49432457 Msa0167520:CDS
ATTTGCTCAGGAGCTTGGGC+GGG 0.402390 1_4:+49432631 Msa0167520:CDS
GGTTAGTGATTGCAAACTTT+AGG 0.403523 1_4:+49435807 Msa0167520:CDS
CAAGTCTGCAGAGGACAAAT+TGG 0.404949 1_4:+49435189 Msa0167520:CDS
TGTGAAAACTATTGATTGCT+TGG 0.405542 1_4:+49431540 Msa0167520:CDS
ATACCTTCAGATTTCGGACT+TGG 0.410789 1_4:-49434651 None:intergenic
TTCAATGGCACTGGAGCAAA+GGG 0.413215 1_4:+49431401 Msa0167520:CDS
CTCAACCTCATGGTCATTGT+TGG 0.418130 1_4:-49430289 None:intergenic
TTTGCTCAGGAGCTTGGGCG+GGG 0.418489 1_4:+49432632 Msa0167520:CDS
ATGGATTTGCTCAGGAGCTT+GGG 0.418850 1_4:+49432627 Msa0167520:CDS
AACTAATGTGGAGGAGGAGC+TGG 0.421014 1_4:+49428928 Msa0167520:CDS
AATGTACTTGAATGTACATC+AGG 0.426491 1_4:+49431442 Msa0167520:CDS
GTCCTTATTACAGACCAATA+AGG 0.427034 1_4:-49429207 None:intergenic
TCATCCAATCGTCTTAAATA+CGG 0.427692 1_4:-49430342 None:intergenic
TGGGTACACAAAGGCTCGCC+TGG 0.428484 1_4:+49432394 Msa0167520:CDS
TCAAATAAAACGTCTGATCA+TGG 0.431981 1_4:-49434425 None:intergenic
TATGAACTCGGCACAATGAC+GGG 0.437450 1_4:-49432489 None:intergenic
TTTGAAAATTGGAATGTAAA+CGG 0.438366 1_4:-49428621 None:intergenic
GATTGCAAACTTTAGGCCTA+TGG 0.439234 1_4:+49435814 Msa0167520:CDS
AACAACACAGTTGCTTTCAC+AGG 0.439858 1_4:+49428716 Msa0167520:CDS
CTGGAACTGAAGAAGATTAA+GGG 0.442023 1_4:+49428947 Msa0167520:CDS
TTCTTTAGACGGTGCTCTCT+GGG 0.443773 1_4:+49433510 Msa0167520:CDS
GGACTGGCTTAATTGGCCTC+AGG 0.444813 1_4:+49432415 Msa0167520:CDS
TTGCAATTGCAAAGCATGCT+TGG 0.446682 1_4:+49430141 Msa0167520:CDS
TTGTGTACCCAGTAAAGAAT+TGG 0.446939 1_4:-49432382 None:intergenic
ACAAATACAAGATGTGGATA+TGG 0.448219 1_4:+49441241 Msa0167520:CDS
TCTTGACCATTCACGAATCT+CGG 0.449180 1_4:-49431053 None:intergenic
AATGTACATCAGGTTTAAGC+TGG 0.453673 1_4:+49431452 Msa0167520:CDS
GACAAAATCAAGTGCAACCT+TGG 0.456526 1_4:-49435101 None:intergenic
TGAGAAGGAGTGAGCGTGCT+AGG 0.457513 1_4:+49428873 Msa0167520:CDS
ATGTCAGATGCATTCAAAAC+AGG 0.458193 1_4:-49431277 None:intergenic
AGGAAGAAGAAGGTGGCAAT+TGG 0.459943 1_4:+49428980 Msa0167520:CDS
TGAAATGCACGGAATGCAAC+CGG 0.461269 1_4:+49429273 Msa0167520:CDS
AAGGTATGCAAAATTTCTTC+CGG 0.461444 1_4:-49429292 None:intergenic
GAAGTATGCTTCTCAGTTCA+AGG 0.462341 1_4:-49431147 None:intergenic
ACACAAAGGCTCGCCTGGAC+TGG 0.464280 1_4:+49432399 Msa0167520:CDS
CTTTGTTGCTGCGAGCTTCG+TGG 0.465758 1_4:+49430902 Msa0167520:CDS
GCTTGATCTGGTCGAGAAGT+TGG 0.466266 1_4:+49435775 Msa0167520:CDS
ATTTGCACCAATTCTTTACT+GGG 0.468225 1_4:+49432375 Msa0167520:CDS
AAAGAAAATAGTTTATTGGT+TGG 0.470270 1_4:+49433481 Msa0167520:CDS
ATTCGTGAATGGTCAAGATC+TGG 0.470424 1_4:+49431058 Msa0167520:CDS
TGTTGATGCTGCCGCTCCTC+CGG 0.475825 1_4:+49428793 Msa0167520:CDS
ACATATACAAGATGTGGATA+TGG 0.475844 1_4:+49441348 Msa0167520:CDS
TGGAATATGTGATGAAAAGT+TGG 0.478264 1_4:+49433432 Msa0167520:CDS
TTATCAAGCATGTCAATCTT+GGG 0.478672 1_4:-49433346 None:intergenic
GCCGATGATGATTGTGATCA+TGG 0.480443 1_4:+49431121 Msa0167520:CDS
TCATATTGCTGAAGTGAAGC+TGG 0.481347 1_4:+49433231 Msa0167520:CDS
ATGTCCTCCTCTTTCAAGTC+AGG 0.481667 1_4:-49430088 None:intergenic
ACGATTGGATGAAGAACAAA+TGG 0.482210 1_4:+49430353 Msa0167520:CDS
ACGGAGAAGGAAGCCGAAAA+GGG 0.482416 1_4:+49428842 Msa0167520:CDS
AGCTTCATCAGGAGCAGCTA+TGG 0.485026 1_4:-49428768 None:intergenic
TGTGATTTACTGGAAGTTTG+CGG 0.485220 1_4:-49435168 None:intergenic
TATTGCTTATGGATTTGCTC+AGG 0.486399 1_4:+49432619 Msa0167520:CDS
GGTTTCTTGATTATCAGGAA+TGG 0.486545 1_4:-49428747 None:intergenic
TGAACCAAACTATTATGAAC+CGG 0.487355 1_4:+49441099 Msa0167520:CDS
CCATTCACGAATCTCGGGTT+GGG 0.489370 1_4:-49431047 None:intergenic
AAGATAAACTCAAACTCGAT+TGG 0.491141 1_4:-49430950 None:intergenic
GATTTGCTCAGGAGCTTGGG+CGG 0.493090 1_4:+49432630 Msa0167520:CDS
TATGTATGCTATGCTTGATC+TGG 0.494282 1_4:+49435763 Msa0167520:CDS
TGATGAAATCAATGCTGCTC+AGG 0.495231 1_4:+49429015 Msa0167520:CDS
TCTTCCGTATTTAAGACGAT+TGG 0.495391 1_4:+49430338 Msa0167520:CDS
CTTGACCATTCACGAATCTC+GGG 0.495468 1_4:-49431052 None:intergenic
GTAAAAGAAATGACAAGGGC+AGG 0.498499 1_4:+49429246 Msa0167520:CDS
AAACCCATCAGTATCTAGCT+AGG 0.502685 1_4:+49428584 Msa0167520:five_prime_UTR
CAGCTTCTGAACAAAAGTCC+AGG 0.502730 1_4:-49434593 None:intergenic
CCTTCAGATTTCGGACTTGG+TGG 0.506047 1_4:-49434648 None:intergenic
TGAAGAACAAATGGCTGAGA+AGG 0.507808 1_4:+49430362 Msa0167520:CDS
GCATCAACAGAAGCTTCATC+AGG 0.508288 1_4:-49428779 None:intergenic
GCATACCTTGTATTAACAGT+TGG 0.514852 1_4:+49429306 Msa0167520:CDS
GGAGCTACATGGTGATAATC+GGG 0.514858 1_4:+49433315 Msa0167520:CDS
TTTCAATGGCACTGGAGCAA+AGG 0.515097 1_4:+49431400 Msa0167520:CDS
ACCATTCACGAATCTCGGGT+TGG 0.516372 1_4:-49431048 None:intergenic
GCTCCCTCTTGTCTTGCTCA+AGG 0.519343 1_4:-49433297 None:intergenic
GACATTGCCAAGAAATGTCC+AGG 0.520062 1_4:+49430106 Msa0167520:CDS
ACTTGGTGGGGACAACCAGC+TGG 0.521593 1_4:-49434634 None:intergenic
AGATTAAGGGGAAACGTGGT+AGG 0.523807 1_4:+49428960 Msa0167520:CDS
TACAGTTTACATAGGAACCT+TGG 0.524108 1_4:-49436009 None:intergenic
AAACTATTGATTGCTTGGAT+TGG 0.524576 1_4:+49431545 Msa0167520:CDS
CTGTGGAGACTTCTGATAGT+AGG 0.527371 1_4:+49431239 Msa0167520:CDS
AGAACTTCTTATACTGTCCC+AGG 0.529232 1_4:+49431344 Msa0167520:CDS
GAATATACAGATCCTTTCAA+TGG 0.530031 1_4:+49432530 Msa0167520:CDS
GGACTCACCTGCACTTATCA+AGG 0.530918 1_4:+49430162 Msa0167520:CDS
CACTTTGGTCGCAGATAATG+TGG 0.533191 1_4:+49441193 Msa0167520:intron
CGATTTGTGGAAAATGGAAG+TGG 0.534768 1_4:+49433412 Msa0167520:CDS
ATAAAACGTCTGATCATGGA+TGG 0.535414 1_4:-49434421 None:intergenic
CCATTGCTCTCCTTTAAAGC+AGG 0.538406 1_4:+49433606 Msa0167520:CDS
TTCAGATTTCGGACTTGGTG+GGG 0.539205 1_4:-49434646 None:intergenic
GGATCTGTATATTCTTTGAA+CGG 0.541600 1_4:-49432521 None:intergenic
ATGACGTAGATTTACTGCCC+TGG 0.541910 1_4:-49431362 None:intergenic
TTGCAATTACCACAGCATCC+TGG 0.543302 1_4:-49430124 None:intergenic
CTGCCACGTTTCTTTGCCGG+AGG 0.549368 1_4:-49428809 None:intergenic
CGAGGGCGTGATTATCTGCA+TGG 0.550325 1_4:+49430974 Msa0167520:CDS
GACTTGTAGGAATTGAACCC+TGG 0.555009 1_4:+49434575 Msa0167520:intron
GCTTGGTATTACGTATCTGA+CGG 0.555671 1_4:-49431501 None:intergenic
GAACTGACCTTGATAAGTGC+AGG 0.556203 1_4:-49430169 None:intergenic
ACAACACAGTTGCTTTCACA+GGG 0.556589 1_4:+49428717 Msa0167520:CDS
CTTCAGATTTCGGACTTGGT+GGG 0.557725 1_4:-49434647 None:intergenic
TAAAACGTCTGATCATGGAT+GGG 0.558437 1_4:-49434420 None:intergenic
TGACGTAGATTTACTGCCCT+GGG 0.558873 1_4:-49431361 None:intergenic
AATGCACGCCACATGACAAA+CGG 0.559884 1_4:-49431478 None:intergenic
GAAATCAATGCTGCTCAGGA+GGG 0.560506 1_4:+49429019 Msa0167520:CDS
GCTGGGAACCGTTTGTCATG+TGG 0.563485 1_4:+49431470 Msa0167520:CDS
CTGGGATATCTTTCGGAGAG+AGG 0.564748 1_4:+49433528 Msa0167520:CDS
TTACTTAACTAATGTGGAGG+AGG 0.564991 1_4:+49428922 Msa0167520:CDS
AAATCAATGCTGCTCAGGAG+GGG 0.565311 1_4:+49429020 Msa0167520:CDS
CACGAAGCTCGCAGCAACAA+AGG 0.565525 1_4:-49430901 None:intergenic
AAACCCTAGCTAGATACTGA+TGG 0.565719 1_4:-49428588 None:intergenic
AGATGCACAAATACAAAATG+TGG 0.566806 1_4:+49441289 Msa0167520:CDS
AATTAAGCTTCAAGTTGCTG+TGG 0.566902 1_4:+49431222 Msa0167520:CDS
TGAAATCAATGCTGCTCAGG+AGG 0.567663 1_4:+49429018 Msa0167520:CDS
CGATGCACAAATACAAGATG+TGG 0.569405 1_4:+49441235 Msa0167520:CDS
GCACCTTGAGCAAGACAAGA+GGG 0.570458 1_4:+49433294 Msa0167520:CDS
ACAGTATAAGAAGTTCTCAC+TGG 0.571064 1_4:-49431338 None:intergenic
GAGGCCAATTAAGCCAGTCC+AGG 0.578924 1_4:-49432412 None:intergenic
AATCAATGCTGCTCAGGAGG+GGG 0.580226 1_4:+49429021 Msa0167520:CDS
TGAGGATTACTTAACTAATG+TGG 0.581603 1_4:+49428916 Msa0167520:CDS
GAATAGTAGATCGTTGAATG+AGG 0.582028 1_4:+49428898 Msa0167520:CDS
TGTATATTCTTTGAACGGCA+AGG 0.583089 1_4:-49432516 None:intergenic
CCTGCTTTAAAGGAGAGCAA+TGG 0.584616 1_4:-49433606 None:intergenic
GAGTTTGAGTTTATCTTCCG+AGG 0.584896 1_4:+49430956 Msa0167520:CDS
TGGAACTGAAGAAGATTAAG+GGG 0.585226 1_4:+49428948 Msa0167520:CDS
GAAAATAGTTTATTGGTTGG+GGG 0.586081 1_4:+49433484 Msa0167520:CDS
GTTGCTGCGAGCTTCGTGGT+GGG 0.586137 1_4:+49430906 Msa0167520:CDS
GAAACGTGGTAGGAAGAAGA+AGG 0.586757 1_4:+49428970 Msa0167520:CDS
ATATGAACTCGGCACAATGA+CGG 0.586817 1_4:-49432490 None:intergenic
AAGGTATCCTGACTTGAAAG+AGG 0.587569 1_4:+49430081 Msa0167520:intron
AGGTTTAGAACACCATTGAA+AGG 0.588651 1_4:-49432542 None:intergenic
AACCCTAGCTAGATACTGAT+GGG 0.588680 1_4:-49428587 None:intergenic
AACCCATCAGTATCTAGCTA+GGG 0.590250 1_4:+49428585 Msa0167520:five_prime_UTR
CAAGACAAGAGGGAGCTACA+TGG 0.591607 1_4:+49433304 Msa0167520:CDS
GTCTGCAGAGGACAAATTGG+AGG 0.593405 1_4:+49435192 Msa0167520:CDS
AGATGCACATATACAAGATG+TGG 0.594273 1_4:+49441342 Msa0167520:CDS
TGTTGCTGCGAGCTTCGTGG+TGG 0.594415 1_4:+49430905 Msa0167520:CDS
TGATCTGGTCGAGAAGTTGG+AGG 0.595507 1_4:+49435778 Msa0167520:CDS
TGATTGCTTGGATTGGTGTG+AGG 0.595645 1_4:+49431552 Msa0167520:CDS
ACTTGGAGAGCTCAACCTCA+TGG 0.596456 1_4:-49430299 None:intergenic
AAAACGTCTGATCATGGATG+GGG 0.596952 1_4:-49434419 None:intergenic
CCCAACCCGAGATTCGTGAA+TGG 0.597529 1_4:+49431047 Msa0167520:CDS
ACGTTTCTTTGCCGGAGGAG+CGG 0.599042 1_4:-49428804 None:intergenic
CTTTAGGCAACTTCACAGCA+AGG 0.600321 1_4:-49432562 None:intergenic
AAGAAGGTGGCAATTGGTGT+CGG 0.600696 1_4:+49428986 Msa0167520:CDS
ATGTACATCAGGTTTAAGCT+GGG 0.604955 1_4:+49431453 Msa0167520:CDS
ACCATGATCACAATCATCAT+CGG 0.605104 1_4:-49431122 None:intergenic
CGAGTGCTTTCGTTTGACAG+AGG 0.605461 1_4:+49435141 Msa0167520:CDS
GGCAGTAAATCTACGTCATG+AGG 0.606103 1_4:+49431366 Msa0167520:CDS
TAAAAGAAATGACAAGGGCA+GGG 0.606870 1_4:+49429247 Msa0167520:CDS
TCCTCAAATAAATTAGAAGG+AGG 0.607054 1_4:-49432458 None:intergenic
AGTTTGAGTTTATCTTCCGA+GGG 0.609136 1_4:+49430957 Msa0167520:CDS
TCTTTCAGTTTCAAAACCTG+AGG 0.609559 1_4:-49432431 None:intergenic
ACATACCAACTGTTAATACA+AGG 0.617370 1_4:-49429311 None:intergenic
AGCTTCTGAACAAAAGTCCA+GGG 0.617796 1_4:-49434592 None:intergenic
AGCACCTTGAGCAAGACAAG+AGG 0.618569 1_4:+49433293 Msa0167520:CDS
GAGATAGAAGCAAAGAGACA+AGG 0.619116 1_4:+49430384 Msa0167520:CDS
TCGGGTTGGGCAGCAGCACG+AGG 0.619296 1_4:-49431034 None:intergenic
ATGCATTGAACAGCAACAGA+TGG 0.621495 1_4:+49429054 Msa0167520:CDS
CGGCAAGGAAGATATGAACT+CGG 0.631163 1_4:-49432501 None:intergenic
TCGAGAAGTTGGAGGAAGCA+AGG 0.632086 1_4:+49435786 Msa0167520:CDS
TATACAAGATGTGGATATGG+AGG 0.634526 1_4:+49441351 Msa0167520:CDS
CATACACAATAGCACAAGGA+AGG 0.637072 1_4:+49431297 Msa0167520:CDS
GCTCCTCCGGCAAAGAAACG+TGG 0.637351 1_4:+49428806 Msa0167520:CDS
CATGCAGATAATCACGCCCT+CGG 0.639805 1_4:-49430973 None:intergenic
TTACAGGTCTGGAGAAACCA+AGG 0.639931 1_4:+49435992 Msa0167520:CDS
AGATGCACAAATGCAAGATG+TGG 0.641138 1_4:+49441396 Msa0167520:CDS
CCACCAAGTCCGAAATCTGA+AGG 0.644909 1_4:+49434648 Msa0167520:CDS
GAAGTGAAGCTGGATTCTAA+GGG 0.652860 1_4:+49433241 Msa0167520:CDS
AAAAGGGCGAAAGTGTGAGA+AGG 0.653518 1_4:+49428858 Msa0167520:CDS
CTGACATACACAATAGCACA+AGG 0.658068 1_4:+49431293 Msa0167520:CDS
GGGCAGGGTTGTGAAATGCA+CGG 0.660572 1_4:+49429262 Msa0167520:CDS
GGATGGCTTGCAGACAGTGA+TGG 0.662046 1_4:+49431079 Msa0167520:CDS
ATTCTTTACTGGGTACACAA+AGG 0.662591 1_4:+49432385 Msa0167520:CDS
ATGAACTCGGCACAATGACG+GGG 0.667242 1_4:-49432488 None:intergenic
GTATCCTGACTTGAAAGAGG+AGG 0.668706 1_4:+49430084 Msa0167520:CDS
TCAATGTAAAAGAAATGACA+AGG 0.668906 1_4:+49429241 Msa0167520:CDS
CGTGGTGGGAAGCTTCTAGG+TGG 0.669451 1_4:+49430920 Msa0167520:CDS
CTACATGGTGATAATCGGGA+CGG 0.669945 1_4:+49433319 Msa0167520:CDS
GTGAATGGTCAAGATCTGGA+TGG 0.677090 1_4:+49431062 Msa0167520:CDS
AGTAAATCACAAGTCTGCAG+AGG 0.679551 1_4:+49435180 Msa0167520:CDS
GGATTACTTAACTAATGTGG+AGG 0.684192 1_4:+49428919 Msa0167520:CDS
AAGAAATGTCCAGGATGCTG+TGG 0.691596 1_4:+49430115 Msa0167520:CDS
GAACTTCTTATACTGTCCCA+GGG 0.693482 1_4:+49431345 Msa0167520:CDS
GGGCGTGATTATCTGCATGG+TGG 0.701277 1_4:+49430977 Msa0167520:CDS
CTGCATCTGACATATCACAA+TGG 0.702155 1_4:-49432673 None:intergenic
ACGTGGTAGGAAGAAGAAGG+TGG 0.709702 1_4:+49428973 Msa0167520:CDS
AAGAAGATTAAGGGGAAACG+TGG 0.711553 1_4:+49428956 Msa0167520:CDS
CAATGTAAAAGAAATGACAA+GGG 0.715489 1_4:+49429242 Msa0167520:CDS
GAAAATTGGAATGTAAACGG+CGG 0.717466 1_4:-49428618 None:intergenic
AGAAACCAACAATGACCATG+AGG 0.730663 1_4:+49430284 Msa0167520:CDS
TCAATGGCACTGGAGCAAAG+GGG 0.769506 1_4:+49431402 Msa0167520:CDS
CAACACAGTTGCTTTCACAG+GGG 0.779411 1_4:+49428718 Msa0167520:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAAAAAAAATATTTATTAT+CGG + chr1_4:49430005-49430024 Msa0167520:intron 0.0%
!!! TTTTTTTTTTTTTTTGTCTT+TGG + chr1_4:49430653-49430672 Msa0167520:intron 10.0%
!!! TTTTTTTTTTTTTTGTCTTT+GGG + chr1_4:49430654-49430673 Msa0167520:intron 10.0%
!!! ACTATAATTTTACTTTATTT+AGG + chr1_4:49431664-49431683 Msa0167520:intron 10.0%
!!! CTATAATTTTACTTTATTTA+GGG + chr1_4:49431665-49431684 Msa0167520:intron 10.0%
!!! ATTTTTCAAAAGAAAAAATT+GGG - chr1_4:49433906-49433925 None:intergenic 10.0%
!!! TATTTTTCAAAAGAAAAAAT+TGG - chr1_4:49433907-49433926 None:intergenic 10.0%
!!! TTCTTTTGAAAAATAATTTT+TGG + chr1_4:49433912-49433931 Msa0167520:intron 10.0%
!! AAAAAAGATATAAAGAAAAT+TGG - chr1_4:49437695-49437714 None:intergenic 10.0%
!!! TCAATATAATATTAGTTTAT+AGG + chr1_4:49437873-49437892 Msa0167520:intron 10.0%
!! TTATTTGTATTCAAAATTAA+AGG - chr1_4:49439329-49439348 None:intergenic 10.0%
!! TTAATAATTAAAAAAAACCA+CGG - chr1_4:49439954-49439973 None:intergenic 10.0%
!! AATCATTATTTGTTTAATAA+AGG + chr1_4:49439977-49439996 Msa0167520:intron 10.0%
!!! TTAATTTTTTTAACAAAAGA+AGG - chr1_4:49440433-49440452 None:intergenic 10.0%
!! AAAAAAATTAAATATATGCA+TGG + chr1_4:49440442-49440461 Msa0167520:intron 10.0%
!!! TATTAATCTTTTAATTTTGA+CGG + chr1_4:49440532-49440551 Msa0167520:intron 10.0%
!! AAAGTTTATAACGTTATTAT+CGG + chr1_4:49428478-49428497 Msa0167520:five_prime_UTR 15.0%
!!! AAAAATATTTATTATCGGTT+TGG + chr1_4:49430010-49430029 Msa0167520:intron 15.0%
!! TGATAAAGAAAATAGTTTAT+TGG + chr1_4:49433477-49433496 Msa0167520:CDS 15.0%
!! TTTAAATATTCTTCCAATTT+AGG - chr1_4:49433559-49433578 None:intergenic 15.0%
!!! ATTTAAAATAGATGATCAAA+AGG + chr1_4:49434868-49434887 Msa0167520:intron 15.0%
!! TACAATTAAAGAATAAAACA+TGG + chr1_4:49436557-49436576 Msa0167520:intron 15.0%
!! AAAGTATAATAAGAATTTCT+TGG + chr1_4:49436816-49436835 Msa0167520:intron 15.0%
!!! ATTAAAATGTCTTTAGTTTT+TGG + chr1_4:49437083-49437102 Msa0167520:intron 15.0%
!!! ATTAAAATGTCTTTAGTTTT+TGG - chr1_4:49437083-49437102 None:intergenic 15.0%
!!! TCTTTATATCTTTTTTTTTG+TGG + chr1_4:49437699-49437718 Msa0167520:intron 15.0%
!! TACTAATTTACTTTATATGT+TGG - chr1_4:49437801-49437820 None:intergenic 15.0%
!! ACATAGAAAAATACTATTAT+TGG + chr1_4:49437971-49437990 Msa0167520:intron 15.0%
!! TTAAATAAAGTAAGTTTGAA+TGG - chr1_4:49438727-49438746 None:intergenic 15.0%
!!! ATGTTTTTCTTTTAATTACT+AGG + chr1_4:49438915-49438934 Msa0167520:intron 15.0%
!!! ATTTAAAGTACAATTTTTAG+AGG - chr1_4:49439513-49439532 None:intergenic 15.0%
!!! GTTACTAATATTTTTTTTAG+AGG - chr1_4:49439536-49439555 None:intergenic 15.0%
!! CAAAAAATATTGTTAAAGAT+TGG + chr1_4:49439565-49439584 Msa0167520:intron 15.0%
!! CAAAAAATAATGTTAAAGAT+TGG + chr1_4:49439627-49439646 Msa0167520:intron 15.0%
!! GTTAAGATTAAATAAAATGT+GGG - chr1_4:49440266-49440285 None:intergenic 15.0%
!!! TTTTCGTTTTTTGTTTTAAA+GGG - chr1_4:49440495-49440514 None:intergenic 15.0%
!!! ATTTTCGTTTTTTGTTTTAA+AGG - chr1_4:49440496-49440515 None:intergenic 15.0%
!! CATAAATTATAATATCACTT+TGG + chr1_4:49441178-49441197 Msa0167520:intron 15.0%
!! TTTGAAAATTGGAATGTAAA+CGG - chr1_4:49428624-49428643 None:intergenic 20.0%
!! TGTAGATTTATGTTTGAATT+TGG + chr1_4:49429117-49429136 Msa0167520:intron 20.0%
!! ACAGAATAAAACATAAGTTA+AGG - chr1_4:49429350-49429369 None:intergenic 20.0%
!! TACATTGTTTATAAAAGTGA+AGG - chr1_4:49429857-49429876 None:intergenic 20.0%
!!! GTGAAAAACATGATATTTTA+GGG + chr1_4:49429948-49429967 Msa0167520:intron 20.0%
!!! CTAAATTTGTTGATAATGTT+GGG - chr1_4:49432006-49432025 None:intergenic 20.0%
!!! TCTAAATTTGTTGATAATGT+TGG - chr1_4:49432007-49432026 None:intergenic 20.0%
!! AAAGAAAATGAATACAACTA+GGG - chr1_4:49432212-49432231 None:intergenic 20.0%
!! ATAAAAATTGCAGAAATTAC+TGG - chr1_4:49432324-49432343 None:intergenic 20.0%
!!! CATAAGCAATATATGTTTTT+GGG - chr1_4:49432610-49432629 None:intergenic 20.0%
!! TAAAATATCATAAGACATTG+TGG - chr1_4:49432736-49432755 None:intergenic 20.0%
!! TAATTGAGTATCATATTGAA+AGG + chr1_4:49432779-49432798 Msa0167520:intron 20.0%
!!! TCATTTTATAAGGTATCTTT+TGG + chr1_4:49433034-49433053 Msa0167520:intron 20.0%
!! AAAGAAAATAGTTTATTGGT+TGG + chr1_4:49433481-49433500 Msa0167520:CDS 20.0%
!!! AAGAAAATAGTTTATTGGTT+GGG + chr1_4:49433482-49433501 Msa0167520:CDS 20.0%
!!! ACAATTTTCTATTATCTGTT+GGG + chr1_4:49433643-49433662 Msa0167520:intron 20.0%
!! TTAATGACTCAAGTTAAAAT+GGG - chr1_4:49433673-49433692 None:intergenic 20.0%
!!! AATAATTTTTGGTACATACT+TGG + chr1_4:49433923-49433942 Msa0167520:intron 20.0%
!! ATTAAGATTATCAACTCAAT+GGG - chr1_4:49434258-49434277 None:intergenic 20.0%
!! TATTAAGATTATCAACTCAA+TGG - chr1_4:49434259-49434278 None:intergenic 20.0%
!! GAAATTAAATACAAATAGAG+TGG - chr1_4:49434363-49434382 None:intergenic 20.0%
!! GGTATAACATACATATATTA+TGG + chr1_4:49434669-49434688 Msa0167520:intron 20.0%
!! CAAAAAAAAACTTTCTTGAA+TGG + chr1_4:49434918-49434937 Msa0167520:intron 20.0%
!!! TACATAACTTTTGTTTCTTT+AGG + chr1_4:49435921-49435940 Msa0167520:intron 20.0%
!!! AAACAATATATGACTTGTAA+TGG + chr1_4:49436178-49436197 Msa0167520:intron 20.0%
!! ATTAAAGAATAAAACATGGT+TGG + chr1_4:49436561-49436580 Msa0167520:intron 20.0%
!! AACATACCTTAAAAAACAAA+CGG - chr1_4:49436630-49436649 None:intergenic 20.0%
!!! ACTACTTTTATGATAACTTA+TGG + chr1_4:49436659-49436678 Msa0167520:intron 20.0%
!!! CTACTTTTATGATAACTTAT+GGG + chr1_4:49436660-49436679 Msa0167520:intron 20.0%
!!! CCATATTTTAATAGTGTTTT+TGG - chr1_4:49437031-49437050 None:intergenic 20.0%
!! CCAAAAACACTATTAAAATA+TGG + chr1_4:49437028-49437047 Msa0167520:intron 20.0%
!!! TTTAGTTTTTGGATATACAA+TGG + chr1_4:49437094-49437113 Msa0167520:intron 20.0%
!!! TTTAGTTTTTGGATATACAA+TGG - chr1_4:49437094-49437113 None:intergenic 20.0%
!! TTCCTTTAATTAAAAACCAA+AGG + chr1_4:49437733-49437752 Msa0167520:intron 20.0%
!! TTACTTTATATGTTGGAAAA+TGG - chr1_4:49437794-49437813 None:intergenic 20.0%
!! CAATATCTACATTTCTTTAT+GGG - chr1_4:49438079-49438098 None:intergenic 20.0%
!! TCAATATCTACATTTCTTTA+TGG - chr1_4:49438080-49438099 None:intergenic 20.0%
!!! CATTTTTTTCTCTATTGTTT+TGG - chr1_4:49438111-49438130 None:intergenic 20.0%
!!! TATCTATCCTCATTTTTTTT+GGG + chr1_4:49438341-49438360 Msa0167520:intron 20.0%
!! CAAAAAATAATGGTAAAGAT+TGG + chr1_4:49439414-49439433 Msa0167520:intron 20.0%
!!! GTTAGTAATCTTTTGTTTAT+AGG - chr1_4:49439449-49439468 None:intergenic 20.0%
!! TTGAGAAAAATTAAACAATG+CGG - chr1_4:49439768-49439787 None:intergenic 20.0%
!!! ATCAAAGTCGATTAATTTTA+TGG + chr1_4:49439855-49439874 Msa0167520:intron 20.0%
!! TAACTAAAAAAAACTTGAGT+GGG - chr1_4:49440101-49440120 None:intergenic 20.0%
!! CGTTAAGATTAAATAAAATG+TGG - chr1_4:49440267-49440286 None:intergenic 20.0%
!!! CTTAACGCTTAAATTTATTT+TGG + chr1_4:49440280-49440299 Msa0167520:intron 20.0%
!!! TTTCGTTTTTTGTTTTAAAG+GGG - chr1_4:49440494-49440513 None:intergenic 20.0%
!!! TTACACTTTTTTTCTTTTTG+AGG + chr1_4:49440910-49440929 Msa0167520:intron 20.0%
!!! ATATATTCTACAAAAGCATT+GGG - chr1_4:49441136-49441155 None:intergenic 20.0%
!!! GACACAATTAATGAAAATTT+TGG + chr1_4:49441266-49441285 Msa0167520:CDS 20.0%
!!! TCACAGCTTTAAACATAATA+AGG - chr1_4:49428562-49428581 None:intergenic 25.0%
! TGTTTGTAGTGTTTGAAAAT+TGG - chr1_4:49428635-49428654 None:intergenic 25.0%
! TTACATGTTGTATGTAATTG+TGG + chr1_4:49429142-49429161 Msa0167520:intron 25.0%
!! TTACTGTTTCTCAATAAACA+GGG + chr1_4:49429170-49429189 Msa0167520:intron 25.0%
!!! TGTCATTTCTTTTACATTGA+TGG - chr1_4:49429241-49429260 None:intergenic 25.0%
! TCAATGTAAAAGAAATGACA+AGG + chr1_4:49429241-49429260 Msa0167520:CDS 25.0%
! CAATGTAAAAGAAATGACAA+GGG + chr1_4:49429242-49429261 Msa0167520:CDS 25.0%
! TGTTTATAAAAGTGAAGGTT+GGG - chr1_4:49429852-49429871 None:intergenic 25.0%
! TTGTTTATAAAAGTGAAGGT+TGG - chr1_4:49429853-49429872 None:intergenic 25.0%
!! GGTGAAAAACATGATATTTT+AGG + chr1_4:49429947-49429966 Msa0167520:intron 25.0%
!!! CATGATATTTTAGGGATATT+TGG + chr1_4:49429956-49429975 Msa0167520:intron 25.0%
!!! TTTATTATCGGTTTGGATTT+TGG + chr1_4:49430017-49430036 Msa0167520:intron 25.0%
! AGGAATAGTTAATCTATAAG+GGG - chr1_4:49430197-49430216 None:intergenic 25.0%
! CAGGAATAGTTAATCTATAA+GGG - chr1_4:49430198-49430217 None:intergenic 25.0%
! ACAGGAATAGTTAATCTATA+AGG - chr1_4:49430199-49430218 None:intergenic 25.0%
!! ACATTTGAAATGTGATAATC+TGG + chr1_4:49430234-49430253 Msa0167520:intron 25.0%
!! AAGTATTTTCAGCATATACT+TGG - chr1_4:49430319-49430338 None:intergenic 25.0%
! AAGCAACACACATTAATAAA+AGG - chr1_4:49430470-49430489 None:intergenic 25.0%
!! TTTTGCTTTACATACTAACT+CGG - chr1_4:49431188-49431207 None:intergenic 25.0%
!!! AGGATTTAAGACATTTTCAA+TGG + chr1_4:49431386-49431405 Msa0167520:CDS 25.0%
! TTGTGATCTTTGCTAAAATT+TGG + chr1_4:49431636-49431655 Msa0167520:intron 25.0%
!! TCATACATGTTTTCTGAATT+TGG + chr1_4:49431723-49431742 Msa0167520:intron 25.0%
!! CATACATGTTTTCTGAATTT+GGG + chr1_4:49431724-49431743 Msa0167520:intron 25.0%
!! TTACTGTTCCAACTAATTTT+TGG + chr1_4:49431860-49431879 Msa0167520:intron 25.0%
! GATGAGAGAAGTTATAATTA+AGG - chr1_4:49432053-49432072 None:intergenic 25.0%
! AAGAAAATGAATACAACTAG+GGG - chr1_4:49432211-49432230 None:intergenic 25.0%
! GAAAGAAAATGAATACAACT+AGG - chr1_4:49432213-49432232 None:intergenic 25.0%
! CTTTCCTCAAATAAATTAGA+AGG - chr1_4:49432464-49432483 None:intergenic 25.0%
!! CCATAAGCAATATATGTTTT+TGG - chr1_4:49432611-49432630 None:intergenic 25.0%
! CCAAAAACATATATTGCTTA+TGG + chr1_4:49432608-49432627 Msa0167520:CDS 25.0%
!! AGTATTTTCAAAGAACACTA+CGG - chr1_4:49432907-49432926 None:intergenic 25.0%
!! ATTAGCTGCATCATTTTATA+AGG + chr1_4:49433024-49433043 Msa0167520:intron 25.0%
!!! TCTGTGCTTCATTTTTTTTT+TGG + chr1_4:49433122-49433141 Msa0167520:intron 25.0%
!! AACATGTTTCTTGTTTAATC+TGG + chr1_4:49433186-49433205 Msa0167520:intron 25.0%
!!! CTTTTGTGTCAGTTTTTTAA+TGG - chr1_4:49433275-49433294 None:intergenic 25.0%
! TAATTCATCTTCTTCCATAA+AGG + chr1_4:49433366-49433385 Msa0167520:CDS 25.0%
!! AGAAAATAGTTTATTGGTTG+GGG + chr1_4:49433483-49433502 Msa0167520:CDS 25.0%
!! ACTAATTTTACCTGCTTTAA+AGG - chr1_4:49433619-49433638 None:intergenic 25.0%
!! GACAATTTTCTATTATCTGT+TGG + chr1_4:49433642-49433661 Msa0167520:intron 25.0%
! TAATGACTCAAGTTAAAATG+GGG - chr1_4:49433672-49433691 None:intergenic 25.0%
! GTTAATGACTCAAGTTAAAA+TGG - chr1_4:49433674-49433693 None:intergenic 25.0%
! TACTGAAAGTAAAACTAACT+GGG - chr1_4:49433711-49433730 None:intergenic 25.0%
! TTACTGAAAGTAAAACTAAC+TGG - chr1_4:49433712-49433731 None:intergenic 25.0%
! GTCACTGTATATGTAATATT+AGG + chr1_4:49433746-49433765 Msa0167520:intron 25.0%
!! AGATAGCATCAATTTTATCA+TGG - chr1_4:49433780-49433799 None:intergenic 25.0%
!! ACACAATTAATCAAAAGTGT+CGG + chr1_4:49433817-49433836 Msa0167520:intron 25.0%
! AAAAAATTGGGTACTTTGTT+TGG - chr1_4:49433894-49433913 None:intergenic 25.0%
! TATTGAAACATATGATATGC+AGG + chr1_4:49434216-49434235 Msa0167520:intron 25.0%
! TATGTTATACCTTCAGATTT+CGG - chr1_4:49434660-49434679 None:intergenic 25.0%
! AAAGGAATAACTTTCTTGAA+TGG + chr1_4:49434886-49434905 Msa0167520:intron 25.0%
!!! TTTGTTGCTTTTCTTTCTAA+TGG + chr1_4:49435021-49435040 Msa0167520:intron 25.0%
! GATATGCAATATCTCAATAT+TGG - chr1_4:49435268-49435287 None:intergenic 25.0%
! AAAGAAGCTAATAACAAAAC+AGG - chr1_4:49435290-49435309 None:intergenic 25.0%
! CTTTCAACTAGATTTCATTA+TGG + chr1_4:49435306-49435325 Msa0167520:intron 25.0%
! ATTCAACAAGTAAAAACAGT+TGG - chr1_4:49435594-49435613 None:intergenic 25.0%
!! TAACAATCTTTTGATATGAC+AGG - chr1_4:49435674-49435693 None:intergenic 25.0%
!! ATATCCTGTGTACTAATTTT+CGG + chr1_4:49436226-49436245 Msa0167520:intron 25.0%
!! ATGTGAACTTTTCATATGTT+GGG + chr1_4:49436502-49436521 Msa0167520:intron 25.0%
! TCCAAAAATTTCAATAAGTG+TGG + chr1_4:49436945-49436964 Msa0167520:intron 25.0%
! CCAAAAATTTCAATAAGTGT+GGG + chr1_4:49436946-49436965 Msa0167520:intron 25.0%
! TAAAATATGGAGTTACGAAT+AGG + chr1_4:49437041-49437060 Msa0167520:intron 25.0%
!!! TCCATATTTTGATAGTGTTT+AGG + chr1_4:49437290-49437309 Msa0167520:intron 25.0%
! TCCTAAACACTATCAAAATA+TGG - chr1_4:49437294-49437313 None:intergenic 25.0%
!!! GACCTTTGGTTTTTAATTAA+AGG - chr1_4:49437738-49437757 None:intergenic 25.0%
!! TATTATTGGTTGAAAAAGCT+AGG + chr1_4:49437985-49438004 Msa0167520:intron 25.0%
!! TTTTCTACGGATAGAAAATT+TGG - chr1_4:49438286-49438305 None:intergenic 25.0%
! TACAATTTACAGGTTACATA+GGG - chr1_4:49438323-49438342 None:intergenic 25.0%
! ATACAATTTACAGGTTACAT+AGG - chr1_4:49438324-49438343 None:intergenic 25.0%
!!! GTATCTATCCTCATTTTTTT+TGG + chr1_4:49438340-49438359 Msa0167520:intron 25.0%
! TGTACTAATTGTAAATGAGA+GGG + chr1_4:49438684-49438703 Msa0167520:intron 25.0%
! ATTCTGGTAAAAGAATGAAA+TGG - chr1_4:49438832-49438851 None:intergenic 25.0%
! CTTTGTAGTTATATACATTC+TGG - chr1_4:49438848-49438867 None:intergenic 25.0%
! CAGAATGTATATAACTACAA+AGG + chr1_4:49438846-49438865 Msa0167520:intron 25.0%
! AATCTCAATTAAACAAACGT+TGG - chr1_4:49438886-49438905 None:intergenic 25.0%
!!! GAGTCATAATCTTTTTTTAG+AGG - chr1_4:49439662-49439681 None:intergenic 25.0%
! TGAGAAAAATTAAACAATGC+GGG - chr1_4:49439767-49439786 None:intergenic 25.0%
!! TATGGATTATTTGACTTTGT+TGG + chr1_4:49439873-49439892 Msa0167520:intron 25.0%
! AACTAAAAAAAACTTGAGTG+GGG - chr1_4:49440100-49440119 None:intergenic 25.0%
! CTAACTAAAAAAAACTTGAG+TGG - chr1_4:49440102-49440121 None:intergenic 25.0%
! ACGGTTCTTATTAGAAAAAT+GGG + chr1_4:49440551-49440570 Msa0167520:intron 25.0%
! AAGGAAAAGAAAACAGAAAA+TGG + chr1_4:49440631-49440650 Msa0167520:intron 25.0%
! ATAGCTGTGAAAATTTGATT+GGG - chr1_4:49440778-49440797 None:intergenic 25.0%
!! TTTTCAAATACACACTTTCA+AGG + chr1_4:49440802-49440821 Msa0167520:intron 25.0%
!! AATAATGCATCAACTTTTCA+AGG + chr1_4:49441049-49441068 Msa0167520:CDS 25.0%
!!! TATATTCTACAAAAGCATTG+GGG - chr1_4:49441135-49441154 None:intergenic 25.0%
!! GATATATTCTACAAAAGCAT+TGG - chr1_4:49441137-49441156 None:intergenic 25.0%
! ACAAATACAAAATGTGGATA+TGG + chr1_4:49441295-49441314 Msa0167520:CDS 25.0%
! TCATACTCGTCTTTAATTTC+AGG + chr1_4:49428521-49428540 Msa0167520:five_prime_UTR 30.0%
! TCTCCATTTGAATTTTTCCA+TGG + chr1_4:49428670-49428689 Msa0167520:exon 30.0%
TGAGGATTACTTAACTAATG+TGG + chr1_4:49428916-49428935 Msa0167520:CDS 30.0%
! GTTACTGTTTCTCAATAAAC+AGG + chr1_4:49429169-49429188 Msa0167520:intron 30.0%
! TACTGTTTCTCAATAAACAG+GGG + chr1_4:49429171-49429190 Msa0167520:intron 30.0%
AAGGTATGCAAAATTTCTTC+CGG - chr1_4:49429295-49429314 None:intergenic 30.0%
ACATACCAACTGTTAATACA+AGG - chr1_4:49429314-49429333 None:intergenic 30.0%
!! TTAACTTGCTTCCTATTTGT+TGG + chr1_4:49429370-49429389 Msa0167520:intron 30.0%
ACACAAGATAACCAACAAAT+AGG - chr1_4:49429384-49429403 None:intergenic 30.0%
! TATTTGTTGGTTATCTTGTG+TGG + chr1_4:49429383-49429402 Msa0167520:intron 30.0%
! ATTTGTTGGTTATCTTGTGT+GGG + chr1_4:49429384-49429403 Msa0167520:intron 30.0%
ATTGATAAACTCACACTTGA+GGG - chr1_4:49429544-49429563 None:intergenic 30.0%
AATTGATAAACTCACACTTG+AGG - chr1_4:49429545-49429564 None:intergenic 30.0%
!!! TAAGGTTTTAGGTTACAATG+TGG - chr1_4:49429796-49429815 None:intergenic 30.0%
CATTGTAACCTAAAACCTTA+AGG + chr1_4:49429796-49429815 Msa0167520:intron 30.0%
!! ATGTTTTTGCTGTCTTATGA+AGG + chr1_4:49430062-49430081 Msa0167520:intron 30.0%
GGAATAGTTAATCTATAAGG+GGG - chr1_4:49430196-49430215 None:intergenic 30.0%
TGTAGAATACAACAAATCAC+AGG - chr1_4:49430217-49430236 None:intergenic 30.0%
TCATCCAATCGTCTTAAATA+CGG - chr1_4:49430345-49430364 None:intergenic 30.0%
AATCCAAAAGAAAGAAGAAG+AGG - chr1_4:49430548-49430567 None:intergenic 30.0%
ATATAAGTATAGTGTGAAGC+AGG - chr1_4:49430588-49430607 None:intergenic 30.0%
AAGATAAACTCAAACTCGAT+TGG - chr1_4:49430953-49430972 None:intergenic 30.0%
AGTACATTGCTGACAATTAT+AGG - chr1_4:49431430-49431449 None:intergenic 30.0%
AATGTACTTGAATGTACATC+AGG + chr1_4:49431442-49431461 Msa0167520:CDS 30.0%
! TACCAAGCAAAAAACACTTT+TGG + chr1_4:49431516-49431535 Msa0167520:CDS 30.0%
!!! ATCCAAAAGTGTTTTTTGCT+TGG - chr1_4:49431521-49431540 None:intergenic 30.0%
! TGTGAAAACTATTGATTGCT+TGG + chr1_4:49431540-49431559 Msa0167520:CDS 30.0%
! AAACTATTGATTGCTTGGAT+TGG + chr1_4:49431545-49431564 Msa0167520:CDS 30.0%
AAGTTTCTCTTAATCCCAAA+AGG - chr1_4:49431759-49431778 None:intergenic 30.0%
ATGAAGTATGACTTGAGTAA+TGG - chr1_4:49431800-49431819 None:intergenic 30.0%
TGAATGTCTTGAAAAGATGT+TGG + chr1_4:49431828-49431847 Msa0167520:intron 30.0%
AATTAGTTGGAACAGTAACT+TGG - chr1_4:49431858-49431877 None:intergenic 30.0%
TAGATCAAGCAAAAAGAACA+GGG - chr1_4:49432161-49432180 None:intergenic 30.0%
GTGTGACAAACTATATAGAA+AGG - chr1_4:49432235-49432254 None:intergenic 30.0%
AATTTGCACCAATTCTTTAC+TGG + chr1_4:49432374-49432393 Msa0167520:CDS 30.0%
ATTTGCACCAATTCTTTACT+GGG + chr1_4:49432375-49432394 Msa0167520:CDS 30.0%
!!! AGGTTTTGAAACTGAAAGAT+TGG + chr1_4:49432435-49432454 Msa0167520:CDS 30.0%
TCCTCAAATAAATTAGAAGG+AGG - chr1_4:49432461-49432480 None:intergenic 30.0%
GGATCTGTATATTCTTTGAA+CGG - chr1_4:49432524-49432543 None:intergenic 30.0%
GAATATACAGATCCTTTCAA+TGG + chr1_4:49432530-49432549 Msa0167520:CDS 30.0%
! ATTCATAGTCTTTCTAGCAT+TGG + chr1_4:49432705-49432724 Msa0167520:intron 30.0%
!! TTGAAAGGTGCATAGTTTTT+AGG + chr1_4:49432794-49432813 Msa0167520:intron 30.0%
!!! GTGTTACTTACCTTTTGTTT+TGG + chr1_4:49432964-49432983 Msa0167520:intron 30.0%
TTAGCAGTAACCAAAACAAA+AGG - chr1_4:49432977-49432996 None:intergenic 30.0%
ATGGATCTGCTAATAAGTAT+AGG - chr1_4:49433079-49433098 None:intergenic 30.0%
TGAATGCATACTCTATTATG+AGG + chr1_4:49433156-49433175 Msa0167520:intron 30.0%
!!! CTTGTTTAATCTGGCTTTTT+AGG + chr1_4:49433195-49433214 Msa0167520:intron 30.0%
TTATCAAGCATGTCAATCTT+GGG - chr1_4:49433349-49433368 None:intergenic 30.0%
ATTATCAAGCATGTCAATCT+TGG - chr1_4:49433350-49433369 None:intergenic 30.0%
TGGAATATGTGATGAAAAGT+TGG + chr1_4:49433432-49433451 Msa0167520:CDS 30.0%
! GAAAATAGTTTATTGGTTGG+GGG + chr1_4:49433484-49433503 Msa0167520:CDS 30.0%
TGTATAACAATAAACTGAGC+TGG - chr1_4:49434035-49434054 None:intergenic 30.0%
TTGTTATACATGACAGTCTT+TGG + chr1_4:49434045-49434064 Msa0167520:intron 30.0%
TGTTATACATGACAGTCTTT+GGG + chr1_4:49434046-49434065 Msa0167520:intron 30.0%
ATTCCTTATTCATGTCATGA+CGG - chr1_4:49434176-49434195 None:intergenic 30.0%
AACACCTTCTTTGATATTGT+AGG + chr1_4:49434389-49434408 Msa0167520:intron 30.0%
ACAACCTACAATATCAAAGA+AGG - chr1_4:49434396-49434415 None:intergenic 30.0%
TCAAATAAAACGTCTGATCA+TGG - chr1_4:49434428-49434447 None:intergenic 30.0%
!! ACAATTCAACATTGACTTGT+AGG + chr1_4:49434562-49434581 Msa0167520:intron 30.0%
AGAAGAGAGAGAATACATAT+AGG + chr1_4:49434774-49434793 Msa0167520:intron 30.0%
ATTCCCATCAGTATATTCAT+GGG + chr1_4:49434815-49434834 Msa0167520:intron 30.0%
! GTAGTGAAGATTTTCTTTCA+CGG - chr1_4:49434950-49434969 None:intergenic 30.0%
GAGCTAGTGATAGATAATTT+AGG - chr1_4:49434989-49435008 None:intergenic 30.0%
TTTGTCTCTCCTGAAAATAT+TGG + chr1_4:49435118-49435137 Msa0167520:CDS 30.0%
TCAAATCAACAAATGTAGCA+TGG - chr1_4:49435224-49435243 None:intergenic 30.0%
!! CAGATTCTAAAACAGCTATT+GGG - chr1_4:49435332-49435351 None:intergenic 30.0%
!!! CAATAGCTGTTTTAGAATCT+GGG + chr1_4:49435331-49435350 Msa0167520:intron 30.0%
!! AGTAACATAGGTTCTGAAAT+AGG - chr1_4:49435638-49435657 None:intergenic 30.0%
CAAGTATGATACAGTAACAT+AGG - chr1_4:49435650-49435669 None:intergenic 30.0%
TATCACAAATCCATAACCAT+AGG - chr1_4:49435833-49435852 None:intergenic 30.0%
ATGTCTGTCATTCAATTTAC+AGG + chr1_4:49435976-49435995 Msa0167520:CDS 30.0%
GATACATCTACAGTTTACAT+AGG - chr1_4:49436020-49436039 None:intergenic 30.0%
!! AGTCCATATTTTGTTATGTC+TGG + chr1_4:49436132-49436151 Msa0167520:intron 30.0%
GTTTAAAAAATGCTTCCTCA+AGG - chr1_4:49436162-49436181 None:intergenic 30.0%
! TATCCTGTGTACTAATTTTC+GGG + chr1_4:49436227-49436246 Msa0167520:intron 30.0%
CAAAAACAATCAAGGTCATT+AGG - chr1_4:49436449-49436468 None:intergenic 30.0%
! CATGTGAACTTTTCATATGT+TGG + chr1_4:49436501-49436520 Msa0167520:intron 30.0%
!!! GAACATCCGTTTGTTTTTTA+AGG + chr1_4:49436621-49436640 Msa0167520:intron 30.0%
! TTTTCATAACTAGAACCTCA+GGG - chr1_4:49436784-49436803 None:intergenic 30.0%
! TTTTTCATAACTAGAACCTC+AGG - chr1_4:49436785-49436804 None:intergenic 30.0%
! CCCACACTTATTGAAATTTT+TGG - chr1_4:49436949-49436968 None:intergenic 30.0%
! GCAATGTTTTGCTTAGTAAT+TGG + chr1_4:49437134-49437153 Msa0167520:intron 30.0%
CAAAATATGGAGTTACGAAT+AGG - chr1_4:49437281-49437300 None:intergenic 30.0%
CAAAAAACTCATCTTGCATA+CGG + chr1_4:49437384-49437403 Msa0167520:intron 30.0%
AAACAATTCAATACTCACCA+TGG + chr1_4:49437480-49437499 Msa0167520:intron 30.0%
!!! CTTGCATCATTTTTAAGTTG+AGG - chr1_4:49437557-49437576 None:intergenic 30.0%
AAGTCACAATCTAAATCTCA+AGG - chr1_4:49437603-49437622 None:intergenic 30.0%
TTGAGATTTAGATTGTGACT+TGG + chr1_4:49437602-49437621 Msa0167520:intron 30.0%
AATTGGTATTCATTGTCTAG+TGG - chr1_4:49437678-49437697 None:intergenic 30.0%
AAAACCAAAGGTCAAGTTAA+AGG + chr1_4:49437745-49437764 Msa0167520:intron 30.0%
TGAGTTATGTCATTATGTGT+GGG + chr1_4:49437923-49437942 Msa0167520:intron 30.0%
GGCAAGATAATAGTTAAAGT+GGG + chr1_4:49437944-49437963 Msa0167520:intron 30.0%
GCAAGATAATAGTTAAAGTG+GGG + chr1_4:49437945-49437964 Msa0167520:intron 30.0%
TGAGGATAGATACAATTTAC+AGG - chr1_4:49438333-49438352 None:intergenic 30.0%
CTTGTAGATGACATAAATAG+AGG + chr1_4:49438630-49438649 Msa0167520:intron 30.0%
GTGTACTAATTGTAAATGAG+AGG + chr1_4:49438683-49438702 Msa0167520:intron 30.0%
AGTTTCTCTCTCTTAATGAA+TGG + chr1_4:49438757-49438776 Msa0167520:intron 30.0%
AAGTGTAAATTACACATGAG+AGG + chr1_4:49438804-49438823 Msa0167520:intron 30.0%
TTTGTTGCTAAAACTGAAGA+TGG - chr1_4:49439109-49439128 None:intergenic 30.0%
! ATTATCCCTTTCAACACTTT+TGG + chr1_4:49439277-49439296 Msa0167520:intron 30.0%
! TTATCCCTTTCAACACTTTT+GGG + chr1_4:49439278-49439297 Msa0167520:intron 30.0%
CAAACGTGAGCAAAAAATAA+TGG + chr1_4:49439404-49439423 Msa0167520:intron 30.0%
! TTTTAATACAAAGAGAACCG+TGG + chr1_4:49439934-49439953 Msa0167520:intron 30.0%
! AGATCACATAGAAAGCATAA+AGG - chr1_4:49440071-49440090 None:intergenic 30.0%
! TTAGTTAGTTTAGTCAGCAA+TGG + chr1_4:49440114-49440133 Msa0167520:intron 30.0%
GACGGTTCTTATTAGAAAAA+TGG + chr1_4:49440550-49440569 Msa0167520:intron 30.0%
AAGTAACGACAAATTGTGAA+AGG + chr1_4:49440612-49440631 Msa0167520:intron 30.0%
CGACGAAAAGAAAAAGAAAA+AGG + chr1_4:49440703-49440722 Msa0167520:intron 30.0%
AAAATTTGATTGGGAACGTT+TGG - chr1_4:49440769-49440788 None:intergenic 30.0%
CATAGCTGTGAAAATTTGAT+TGG - chr1_4:49440779-49440798 None:intergenic 30.0%
TGTTGGGTCATTAATATGTA+TGG - chr1_4:49440857-49440876 None:intergenic 30.0%
GTTGATGCATTATTAAGATC+TGG - chr1_4:49441043-49441062 None:intergenic 30.0%
TGAACCAAACTATTATGAAC+CGG + chr1_4:49441099-49441118 Msa0167520:CDS 30.0%
TATTCCGGTTCATAATAGTT+TGG - chr1_4:49441106-49441125 None:intergenic 30.0%
AACTATTATGAACCGGAATA+TGG + chr1_4:49441106-49441125 Msa0167520:CDS 30.0%
ACAAATACAAGATGTGGATA+TGG + chr1_4:49441241-49441260 Msa0167520:CDS 30.0%
AGATGCACAAATACAAAATG+TGG + chr1_4:49441289-49441308 Msa0167520:CDS 30.0%
ACATATACAAGATGTGGATA+TGG + chr1_4:49441348-49441367 Msa0167520:CDS 30.0%
GAAAATTGGAATGTAAACGG+CGG - chr1_4:49428621-49428640 None:intergenic 35.0%
! CCATTTGAATTTTTCCATGG+CGG + chr1_4:49428673-49428692 Msa0167520:exon 35.0%
! CATTTGAATTTTTCCATGGC+GGG + chr1_4:49428674-49428693 Msa0167520:exon 35.0%
! ATTTGAATTTTTCCATGGCG+GGG + chr1_4:49428675-49428694 Msa0167520:exon 35.0%
GGTTTCTTGATTATCAGGAA+TGG - chr1_4:49428750-49428769 None:intergenic 35.0%
GCTATGGTTTCTTGATTATC+AGG - chr1_4:49428755-49428774 None:intergenic 35.0%
GAATAGTAGATCGTTGAATG+AGG + chr1_4:49428898-49428917 Msa0167520:CDS 35.0%
GGATTACTTAACTAATGTGG+AGG + chr1_4:49428919-49428938 Msa0167520:CDS 35.0%
TTACTTAACTAATGTGGAGG+AGG + chr1_4:49428922-49428941 Msa0167520:CDS 35.0%
CTGGAACTGAAGAAGATTAA+GGG + chr1_4:49428947-49428966 Msa0167520:CDS 35.0%
TGGAACTGAAGAAGATTAAG+GGG + chr1_4:49428948-49428967 Msa0167520:CDS 35.0%
GATTGAAGATGTGTCCTTAT+TGG + chr1_4:49429193-49429212 Msa0167520:CDS 35.0%
! GTCCTTATTGGTCTGTAATA+AGG + chr1_4:49429205-49429224 Msa0167520:CDS 35.0%
GTCCTTATTACAGACCAATA+AGG - chr1_4:49429210-49429229 None:intergenic 35.0%
TAAAAGAAATGACAAGGGCA+GGG + chr1_4:49429247-49429266 Msa0167520:CDS 35.0%
GCATACCTTGTATTAACAGT+TGG + chr1_4:49429306-49429325 Msa0167520:CDS 35.0%
! TTTGTTGGTTATCTTGTGTG+GGG + chr1_4:49429385-49429404 Msa0167520:intron 35.0%
CACTTTAACCCAAAACCTTA+AGG + chr1_4:49429476-49429495 Msa0167520:intron 35.0%
TTGATAAACTCACACTTGAG+GGG - chr1_4:49429543-49429562 None:intergenic 35.0%
ATGAAAGAACTTCCACTTGA+GGG - chr1_4:49429580-49429599 None:intergenic 35.0%
AGTATAAGTGCAAGTGTATG+TGG - chr1_4:49429603-49429622 None:intergenic 35.0%
ATATCGAAAGTTCAGGTCAT+GGG - chr1_4:49429657-49429676 None:intergenic 35.0%
TATATCGAAAGTTCAGGTCA+TGG - chr1_4:49429658-49429677 None:intergenic 35.0%
TGACCTGAACTTTCGATATA+AGG + chr1_4:49429658-49429677 Msa0167520:intron 35.0%
AACCTAAAACCTTAAGGCAA+TGG + chr1_4:49429802-49429821 Msa0167520:intron 35.0%
ACCTAAAACCTTAAGGCAAT+GGG + chr1_4:49429803-49429822 Msa0167520:intron 35.0%
TTCAATAACAAGACGTTGTG+TGG - chr1_4:49429903-49429922 None:intergenic 35.0%
!! GTCTTGTTATTGAATGAGAC+TGG + chr1_4:49429909-49429928 Msa0167520:intron 35.0%
AAGACAGCAAAAACATACAC+TGG - chr1_4:49430058-49430077 None:intergenic 35.0%
! TCTTCCGTATTTAAGACGAT+TGG + chr1_4:49430338-49430357 Msa0167520:CDS 35.0%
ACGATTGGATGAAGAACAAA+TGG + chr1_4:49430353-49430372 Msa0167520:CDS 35.0%
! ACTCCTCTTCTTCTTTCTTT+TGG + chr1_4:49430542-49430561 Msa0167520:intron 35.0%
!!! CTCTTTTTTAGGGATATCTG+CGG - chr1_4:49430723-49430742 None:intergenic 35.0%
!!! AGTACACACGCTCTTTTTTA+GGG - chr1_4:49430733-49430752 None:intergenic 35.0%
! AGTTTGAGTTTATCTTCCGA+GGG + chr1_4:49430957-49430976 Msa0167520:CDS 35.0%
ACCATGATCACAATCATCAT+CGG - chr1_4:49431125-49431144 None:intergenic 35.0%
!! AATTAAGCTTCAAGTTGCTG+TGG + chr1_4:49431222-49431241 Msa0167520:CDS 35.0%
ATGTCAGATGCATTCAAAAC+AGG - chr1_4:49431280-49431299 None:intergenic 35.0%
ACAGTATAAGAAGTTCTCAC+TGG - chr1_4:49431341-49431360 None:intergenic 35.0%
! TAAGACATTTTCAATGGCAC+TGG + chr1_4:49431392-49431411 Msa0167520:CDS 35.0%
AATGTACATCAGGTTTAAGC+TGG + chr1_4:49431452-49431471 Msa0167520:CDS 35.0%
ATGTACATCAGGTTTAAGCT+GGG + chr1_4:49431453-49431472 Msa0167520:CDS 35.0%
CACAATACAAGCTCAAGATA+TGG - chr1_4:49431621-49431640 None:intergenic 35.0%
! TTTGGGTATTTCCATCCTTT+TGG + chr1_4:49431741-49431760 Msa0167520:intron 35.0%
! TTGGGTATTTCCATCCTTTT+GGG + chr1_4:49431742-49431761 Msa0167520:intron 35.0%
TTCTCTTAATCCCAAAAGGA+TGG - chr1_4:49431755-49431774 None:intergenic 35.0%
!! CTGTTCCAACTAATTTTTGG+CGG + chr1_4:49431863-49431882 Msa0167520:intron 35.0%
AAAAACGTGTCTAGACTAGA+TGG + chr1_4:49431901-49431920 Msa0167520:intron 35.0%
ATAGAACTTTAACCTTGTGC+TGG - chr1_4:49431953-49431972 None:intergenic 35.0%
CTCATCTTTCTCTTAGTCAT+AGG + chr1_4:49432067-49432086 Msa0167520:intron 35.0%
GTAGATCAAGCAAAAAGAAC+AGG - chr1_4:49432162-49432181 None:intergenic 35.0%
!! AAGGGCAACAAAAAGTACTT+CGG - chr1_4:49432184-49432203 None:intergenic 35.0%
CAGATAGACATGTCATGTAA+AGG - chr1_4:49432298-49432317 None:intergenic 35.0%
TTGTGTACCCAGTAAAGAAT+TGG - chr1_4:49432385-49432404 None:intergenic 35.0%
ATTCTTTACTGGGTACACAA+AGG + chr1_4:49432385-49432404 Msa0167520:CDS 35.0%
TCTTTCAGTTTCAAAACCTG+AGG - chr1_4:49432434-49432453 None:intergenic 35.0%
GCCTCCTTCTAATTTATTTG+AGG + chr1_4:49432457-49432476 Msa0167520:CDS 35.0%
TGTATATTCTTTGAACGGCA+AGG - chr1_4:49432519-49432538 None:intergenic 35.0%
! AGGTTTAGAACACCATTGAA+AGG - chr1_4:49432545-49432564 None:intergenic 35.0%
TCTGGCTGTAAAACATCTTT+AGG - chr1_4:49432581-49432600 None:intergenic 35.0%
! TATTGCTTATGGATTTGCTC+AGG + chr1_4:49432619-49432638 Msa0167520:CDS 35.0%
GTGCAACAAGCAAAAAAGTA+AGG - chr1_4:49432885-49432904 None:intergenic 35.0%
! GCAAAATAGTGTTCGATTTG+TGG + chr1_4:49433399-49433418 Msa0167520:CDS 35.0%
! AGTGTTCGATTTGTGGAAAA+TGG + chr1_4:49433406-49433425 Msa0167520:CDS 35.0%
GATACACATGAGTACTTCTT+GGG - chr1_4:49433872-49433891 None:intergenic 35.0%
TTTGGGTACATCTTGAATGT+TGG + chr1_4:49433967-49433986 Msa0167520:intron 35.0%
TAAAACGTCTGATCATGGAT+GGG - chr1_4:49434423-49434442 None:intergenic 35.0%
ATAAAACGTCTGATCATGGA+TGG - chr1_4:49434424-49434443 None:intergenic 35.0%
TGACTATCGAGCATAAAAAG+AGG + chr1_4:49434445-49434464 Msa0167520:CDS 35.0%
TATACACTTTGTGGCAAACA+AGG - chr1_4:49434724-49434743 None:intergenic 35.0%
GATTCCCATCAGTATATTCA+TGG + chr1_4:49434814-49434833 Msa0167520:intron 35.0%
TTCCCATCAGTATATTCATG+GGG + chr1_4:49434816-49434835 Msa0167520:intron 35.0%
GGAATAACTTTCTTGAATGG+TGG + chr1_4:49434889-49434908 Msa0167520:intron 35.0%
! TGAAGATTTTCTTTCACGGT+TGG - chr1_4:49434946-49434965 None:intergenic 35.0%
TGTGATTTACTGGAAGTTTG+CGG - chr1_4:49435171-49435190 None:intergenic 35.0%
!! CCAGATTCTAAAACAGCTAT+TGG - chr1_4:49435333-49435352 None:intergenic 35.0%
!!! CCAATAGCTGTTTTAGAATC+TGG + chr1_4:49435330-49435349 Msa0167520:intron 35.0%
CTTGGCTTATTGGAACAATT+TGG + chr1_4:49435354-49435373 Msa0167520:intron 35.0%
AACCTATTAGTGTTTGGATC+TGG - chr1_4:49435434-49435453 None:intergenic 35.0%
CAGTTCAACCTATTAGTGTT+TGG - chr1_4:49435440-49435459 None:intergenic 35.0%
! CAAACACTAATAGGTTGAAC+TGG + chr1_4:49435438-49435457 Msa0167520:intron 35.0%
!! TATCTGATTGCTGCTTCTTT+TGG + chr1_4:49435720-49435739 Msa0167520:intron 35.0%
!! TTGCTGCTTCTTTTGGTAAA+AGG + chr1_4:49435727-49435746 Msa0167520:intron 35.0%
TATGTATGCTATGCTTGATC+TGG + chr1_4:49435763-49435782 Msa0167520:CDS 35.0%
GGTTAGTGATTGCAAACTTT+AGG + chr1_4:49435807-49435826 Msa0167520:CDS 35.0%
AAACTTTAGGCCTATGGTTA+TGG + chr1_4:49435820-49435839 Msa0167520:intron 35.0%
!! CTTTTGTTTCTTTAGGCTCA+CGG + chr1_4:49435928-49435947 Msa0167520:intron 35.0%
TGTCATTCAATTTACAGGTC+TGG + chr1_4:49435981-49436000 Msa0167520:CDS 35.0%
TACAGTTTACATAGGAACCT+TGG - chr1_4:49436012-49436031 None:intergenic 35.0%
TGTATCTCAGAGATTGAATC+TGG + chr1_4:49436034-49436053 Msa0167520:intron 35.0%
TCAGAGATTGAATCTGGATA+GGG + chr1_4:49436040-49436059 Msa0167520:intron 35.0%
TAAATTTGAGTCGCGTAGTT+AGG + chr1_4:49436066-49436085 Msa0167520:intron 35.0%
TCTTTGTATTGCAACTGTAG+AGG + chr1_4:49436105-49436124 Msa0167520:intron 35.0%
GTGCCAGACATAACAAAATA+TGG - chr1_4:49436138-49436157 None:intergenic 35.0%
CTTGTAATGGTGTTCTTACA+AGG + chr1_4:49436191-49436210 Msa0167520:intron 35.0%
TAGTACACAGGATATACAAG+TGG - chr1_4:49436221-49436240 None:intergenic 35.0%
AAACCCGAAAATTAGTACAC+AGG - chr1_4:49436233-49436252 None:intergenic 35.0%
!!! TACTAATTTTCGGGTTTGTC+TGG + chr1_4:49436236-49436255 Msa0167520:intron 35.0%
! AACTACAGCATTTTGCATCA+AGG - chr1_4:49436339-49436358 None:intergenic 35.0%
TGTAGTGACAAAAACAATCG+AGG - chr1_4:49436380-49436399 None:intergenic 35.0%
TTTAGCGGCAAAAACAATCA+AGG - chr1_4:49436457-49436476 None:intergenic 35.0%
!!! TGATTGTTTTTGCCGCTAAA+AGG + chr1_4:49436457-49436476 Msa0167520:intron 35.0%
! TTACCAGTACTACCTTTTAG+CGG - chr1_4:49436472-49436491 None:intergenic 35.0%
TTTCATAACTAGAACCTCAG+GGG - chr1_4:49436783-49436802 None:intergenic 35.0%
! TTTTCTTAACTAGTGTCCCA+TGG + chr1_4:49436910-49436929 Msa0167520:intron 35.0%
GCTTAACAACAGATTTACCA+TGG - chr1_4:49437500-49437519 None:intergenic 35.0%
AATCTGTTGTTAAGCTCTTG+AGG + chr1_4:49437505-49437524 Msa0167520:intron 35.0%
CTCAAGGCATAAACTAGAAA+AGG - chr1_4:49437587-49437606 None:intergenic 35.0%
!! TTGTGACTTGGTATTGTAAG+TGG + chr1_4:49437614-49437633 Msa0167520:intron 35.0%
!! TGTGACTTGGTATTGTAAGT+GGG + chr1_4:49437615-49437634 Msa0167520:intron 35.0%
!! TAAGCCTTTAACTTGACCTT+TGG - chr1_4:49437752-49437771 None:intergenic 35.0%
CTGAGTTATGTCATTATGTG+TGG + chr1_4:49437922-49437941 Msa0167520:intron 35.0%
GGGCAAGATAATAGTTAAAG+TGG + chr1_4:49437943-49437962 Msa0167520:intron 35.0%
! ACTCTAGGTACTCTTTTCTA+CGG - chr1_4:49438299-49438318 None:intergenic 35.0%
GGTCTAACCCAAAAAAAATG+AGG - chr1_4:49438351-49438370 None:intergenic 35.0%
TTCCCTCTAACTAGATGTAA+TGG + chr1_4:49438523-49438542 Msa0167520:intron 35.0%
TCCCTCTAACTAGATGTAAT+GGG + chr1_4:49438524-49438543 Msa0167520:intron 35.0%
ACCATTCATGTTCATTGCAA+CGG - chr1_4:49438583-49438602 None:intergenic 35.0%
AGTAGGATTCTCATAGTTCA+TGG + chr1_4:49439735-49439754 Msa0167520:intron 35.0%
AATTCTGAATTCTGATGCAG+AGG - chr1_4:49439802-49439821 None:intergenic 35.0%
GCTTATACAAACTAATAGCG+TGG + chr1_4:49439905-49439924 Msa0167520:intron 35.0%
TTCAGCAACATATGTAACGT+CGG + chr1_4:49440009-49440028 Msa0167520:intron 35.0%
TAAAGGAGTTGAGTGATAGA+GGG - chr1_4:49440054-49440073 None:intergenic 35.0%
ATAAAGGAGTTGAGTGATAG+AGG - chr1_4:49440055-49440074 None:intergenic 35.0%
ATATTGGAGGTCCTTATCAA+TGG - chr1_4:49440173-49440192 None:intergenic 35.0%
! GGACCTCCAATATTTTCAAA+TGG + chr1_4:49440180-49440199 Msa0167520:intron 35.0%
AGGCCATTTGAAAATATTGG+AGG - chr1_4:49440186-49440205 None:intergenic 35.0%
CGAAGGCCATTTGAAAATAT+TGG - chr1_4:49440189-49440208 None:intergenic 35.0%
ATGTAAATGTGAGATTGCTC+CGG - chr1_4:49440238-49440257 None:intergenic 35.0%
ACACATCTATGGCTTGAAAT+TGG + chr1_4:49440312-49440331 Msa0167520:intron 35.0%
CACATCTATGGCTTGAAATT+GGG + chr1_4:49440313-49440332 Msa0167520:intron 35.0%
ACACCTAAATTGAGCAATGA+TGG + chr1_4:49440346-49440365 Msa0167520:intron 35.0%
CATCCATCATTGCTCAATTT+AGG - chr1_4:49440352-49440371 None:intergenic 35.0%
!! CAATGATGGATGTTGCTATT+TGG + chr1_4:49440360-49440379 Msa0167520:intron 35.0%
ATAGCAAAAGTCAACTATCG+AGG + chr1_4:49440576-49440595 Msa0167520:intron 35.0%
TAGCAAAAGTCAACTATCGA+GGG + chr1_4:49440577-49440596 Msa0167520:intron 35.0%
TGATTCTGCTTAGTTGACAT+GGG - chr1_4:49440830-49440849 None:intergenic 35.0%
TTGATTCTGCTTAGTTGACA+TGG - chr1_4:49440831-49440850 None:intergenic 35.0%
CATATTAATGACCCAACACT+TGG + chr1_4:49440859-49440878 Msa0167520:intron 35.0%
AGATGCACATATACAAGATG+TGG + chr1_4:49441342-49441361 Msa0167520:CDS 35.0%
TATACAAGATGTGGATATGG+AGG + chr1_4:49441351-49441370 Msa0167520:CDS 35.0%
AAACCCATCAGTATCTAGCT+AGG + chr1_4:49428584-49428603 Msa0167520:five_prime_UTR 40.0%
AACCCATCAGTATCTAGCTA+GGG + chr1_4:49428585-49428604 Msa0167520:five_prime_UTR 40.0%
AACCCTAGCTAGATACTGAT+GGG - chr1_4:49428590-49428609 None:intergenic 40.0%
AAACCCTAGCTAGATACTGA+TGG - chr1_4:49428591-49428610 None:intergenic 40.0%
CCGCCATGGAAAAATTCAAA+TGG - chr1_4:49428676-49428695 None:intergenic 40.0%
! TTTGAATTTTTCCATGGCGG+GGG + chr1_4:49428676-49428695 Msa0167520:exon 40.0%
! AACAACACAGTTGCTTTCAC+AGG + chr1_4:49428716-49428735 Msa0167520:CDS 40.0%
! ACAACACAGTTGCTTTCACA+GGG + chr1_4:49428717-49428736 Msa0167520:CDS 40.0%
ACGTGGCAGAAAGAGAAAAA+CGG + chr1_4:49428823-49428842 Msa0167520:CDS 40.0%
CAGAAAGAGAAAAACGGAGA+AGG + chr1_4:49428829-49428848 Msa0167520:CDS 40.0%
GCTGGAACTGAAGAAGATTA+AGG + chr1_4:49428946-49428965 Msa0167520:CDS 40.0%
AAGAAGATTAAGGGGAAACG+TGG + chr1_4:49428956-49428975 Msa0167520:CDS 40.0%
TGATGAAATCAATGCTGCTC+AGG + chr1_4:49429015-49429034 Msa0167520:CDS 40.0%
! TGTTGCTGTTCAATGCATTC+AGG - chr1_4:49429052-49429071 None:intergenic 40.0%
ATGCATTGAACAGCAACAGA+TGG + chr1_4:49429054-49429073 Msa0167520:CDS 40.0%
GTAAAAGAAATGACAAGGGC+AGG + chr1_4:49429246-49429265 Msa0167520:CDS 40.0%
AGCAACTAGACAAGTGAGTT+TGG + chr1_4:49429447-49429466 Msa0167520:intron 40.0%
AACCCAAAACCTTAAGGCAT+TGG + chr1_4:49429482-49429501 Msa0167520:intron 40.0%
! ACCCAAAACCTTAAGGCATT+GGG + chr1_4:49429483-49429502 Msa0167520:intron 40.0%
! ACCCAATGCCTTAAGGTTTT+GGG - chr1_4:49429487-49429506 None:intergenic 40.0%
! AACCCAATGCCTTAAGGTTT+TGG - chr1_4:49429488-49429507 None:intergenic 40.0%
!! ACCTTAAGGCATTGGGTTTA+AGG + chr1_4:49429490-49429509 Msa0167520:intron 40.0%
!! CCTTAAGGCATTGGGTTTAA+GGG + chr1_4:49429491-49429510 Msa0167520:intron 40.0%
ATTGTTCTGTAGCAAGTGAG+AGG - chr1_4:49429518-49429537 None:intergenic 40.0%
TGAAAGAACTTCCACTTGAG+GGG - chr1_4:49429579-49429598 None:intergenic 40.0%
GATGAAAGAACTTCCACTTG+AGG - chr1_4:49429581-49429600 None:intergenic 40.0%
GCTCCTTATATCGAAAGTTC+AGG - chr1_4:49429664-49429683 None:intergenic 40.0%
GAACTTTCGATATAAGGAGC+CGG + chr1_4:49429664-49429683 Msa0167520:intron 40.0%
! ACCCATTGCCTTAAGGTTTT+AGG - chr1_4:49429807-49429826 None:intergenic 40.0%
! ACCTTAAGGCAATGGGTTTA+TGG + chr1_4:49429810-49429829 Msa0167520:intron 40.0%
TCCATAAACCCATTGCCTTA+AGG - chr1_4:49429814-49429833 None:intergenic 40.0%
! AAGGTATCCTGACTTGAAAG+AGG + chr1_4:49430081-49430100 Msa0167520:intron 40.0%
TTGCAATTGCAAAGCATGCT+TGG + chr1_4:49430141-49430160 Msa0167520:CDS 40.0%
! GTGATAATCTGGTTCACTAC+AGG + chr1_4:49430245-49430264 Msa0167520:intron 40.0%
!! TCATGGTCATTGTTGGTTTC+TGG - chr1_4:49430285-49430304 None:intergenic 40.0%
AGAAACCAACAATGACCATG+AGG + chr1_4:49430284-49430303 Msa0167520:CDS 40.0%
TGAAGAACAAATGGCTGAGA+AGG + chr1_4:49430362-49430381 Msa0167520:CDS 40.0%
GAGATAGAAGCAAAGAGACA+AGG + chr1_4:49430384-49430403 Msa0167520:CDS 40.0%
ATTGCAAGAAGTGAGACTCT+TGG - chr1_4:49430420-49430439 None:intergenic 40.0%
!!! GTTGCTTTTCTCATGCTTCA+TGG + chr1_4:49430483-49430502 Msa0167520:intron 40.0%
!! TCTTTGGGATGAACATTGCA+GGG + chr1_4:49430669-49430688 Msa0167520:intron 40.0%
!!! CAGTACACACGCTCTTTTTT+AGG - chr1_4:49430734-49430753 None:intergenic 40.0%
! CTAAAAAAGAGCGTGTGTAC+TGG + chr1_4:49430732-49430751 Msa0167520:CDS 40.0%
! AGCATTTTGTACAGCTTCTG+TGG - chr1_4:49430865-49430884 None:intergenic 40.0%
! GAGTTTGAGTTTATCTTCCG+AGG + chr1_4:49430956-49430975 Msa0167520:CDS 40.0%
TCTTGACCATTCACGAATCT+CGG - chr1_4:49431056-49431075 None:intergenic 40.0%
ATTCGTGAATGGTCAAGATC+TGG + chr1_4:49431058-49431077 Msa0167520:CDS 40.0%
!!! TCACAATCATCATCGGCTTT+TGG - chr1_4:49431118-49431137 None:intergenic 40.0%
GAAGTATGCTTCTCAGTTCA+AGG - chr1_4:49431150-49431169 None:intergenic 40.0%
! AACTCGGAGATGCAATTTTG+TGG - chr1_4:49431172-49431191 None:intergenic 40.0%
CTGACATACACAATAGCACA+AGG + chr1_4:49431293-49431312 Msa0167520:CDS 40.0%
CATACACAATAGCACAAGGA+AGG + chr1_4:49431297-49431316 Msa0167520:CDS 40.0%
AGAACTTCTTATACTGTCCC+AGG + chr1_4:49431344-49431363 Msa0167520:CDS 40.0%
GAACTTCTTATACTGTCCCA+GGG + chr1_4:49431345-49431364 Msa0167520:CDS 40.0%
GCTTGGTATTACGTATCTGA+CGG - chr1_4:49431504-49431523 None:intergenic 40.0%
ACTGTCCGCCAAAAATTAGT+TGG - chr1_4:49431871-49431890 None:intergenic 40.0%
TGAGAAATTGAGAGACACTG+AGG - chr1_4:49432093-49432112 None:intergenic 40.0%
AATACAACTAGGGGATGCAA+GGG - chr1_4:49432202-49432221 None:intergenic 40.0%
! TCTGAGATGTTGATTGATGC+AGG + chr1_4:49432343-49432362 Msa0167520:intron 40.0%
! CTGAGATGTTGATTGATGCA+GGG + chr1_4:49432344-49432363 Msa0167520:intron 40.0%
ATATGAACTCGGCACAATGA+CGG - chr1_4:49432493-49432512 None:intergenic 40.0%
! AGATGTTTTACAGCCAGACA+TGG + chr1_4:49432583-49432602 Msa0167520:CDS 40.0%
! GATGTTTTACAGCCAGACAT+GGG + chr1_4:49432584-49432603 Msa0167520:CDS 40.0%
CTGCATCTGACATATCACAA+TGG - chr1_4:49432676-49432695 None:intergenic 40.0%
CATGGTGTAACAGCTTACAA+AGG - chr1_4:49432832-49432851 None:intergenic 40.0%
GGCATGTACTTGAAACTACA+AGG - chr1_4:49432864-49432883 None:intergenic 40.0%
ATGAAGCACAGACAAAGAAC+TGG - chr1_4:49433114-49433133 None:intergenic 40.0%
TCATATTGCTGAAGTGAAGC+TGG + chr1_4:49433231-49433250 Msa0167520:CDS 40.0%
TGAAGTGAAGCTGGATTCTA+AGG + chr1_4:49433240-49433259 Msa0167520:CDS 40.0%
GAAGTGAAGCTGGATTCTAA+GGG + chr1_4:49433241-49433260 Msa0167520:CDS 40.0%
TTGCTCGTATGAAGCCTTTA+TGG - chr1_4:49433383-49433402 None:intergenic 40.0%
CGATTTGTGGAAAATGGAAG+TGG + chr1_4:49433412-49433431 Msa0167520:CDS 40.0%
GTTGGGGGAAATTCTTTAGA+CGG + chr1_4:49433499-49433518 Msa0167520:CDS 40.0%
GAGAGAGGATGTACCTAAAT+TGG + chr1_4:49433543-49433562 Msa0167520:CDS 40.0%
!! AGAAGCATTTCAGAGAGTTC+AGG + chr1_4:49433578-49433597 Msa0167520:CDS 40.0%
TTGATGCTATCTCTCCTTGT+CGG + chr1_4:49433788-49433807 Msa0167520:intron 40.0%
GGATACACATGAGTACTTCT+TGG - chr1_4:49433873-49433892 None:intergenic 40.0%
ATTCAAGATGTACCCAAACC+CGG - chr1_4:49433965-49433984 None:intergenic 40.0%
GTACCGTCATGACATGAATA+AGG + chr1_4:49434170-49434189 Msa0167520:intron 40.0%
AAAACGTCTGATCATGGATG+GGG - chr1_4:49434422-49434441 None:intergenic 40.0%
CGAGCATAAAAAGAGGCTTA+AGG + chr1_4:49434452-49434471 Msa0167520:CDS 40.0%
GCATAAAAAGAGGCTTAAGG+AGG + chr1_4:49434455-49434474 Msa0167520:CDS 40.0%
AGCTTCTGAACAAAAGTCCA+GGG - chr1_4:49434595-49434614 None:intergenic 40.0%
! TGGACTTTTGTTCAGAAGCT+GGG + chr1_4:49434595-49434614 Msa0167520:CDS 40.0%
ATACCTTCAGATTTCGGACT+TGG - chr1_4:49434654-49434673 None:intergenic 40.0%
GCCACAAAGTGTATATGTTG+CGG + chr1_4:49434729-49434748 Msa0167520:intron 40.0%
ACCGCAACATATACACTTTG+TGG - chr1_4:49434733-49434752 None:intergenic 40.0%
! ATGTTGCGGTTGTGAGTTTT+AGG + chr1_4:49434743-49434762 Msa0167520:intron 40.0%
GTCCCCATGAATATACTGAT+GGG - chr1_4:49434821-49434840 None:intergenic 40.0%
AGTCCCCATGAATATACTGA+TGG - chr1_4:49434822-49434841 None:intergenic 40.0%
TTCATGGGGACTGATATTCT+TGG + chr1_4:49434830-49434849 Msa0167520:intron 40.0%
TCATGGGGACTGATATTCTT+GGG + chr1_4:49434831-49434850 Msa0167520:intron 40.0%
GACAAAATCAAGTGCAACCT+TGG - chr1_4:49435104-49435123 None:intergenic 40.0%
! AAGCACTCGCCAATATTTTC+AGG - chr1_4:49435130-49435149 None:intergenic 40.0%
TCTGCAGACTTGTGATTTAC+TGG - chr1_4:49435181-49435200 None:intergenic 40.0%
AGTAAATCACAAGTCTGCAG+AGG + chr1_4:49435180-49435199 Msa0167520:CDS 40.0%
AACATGACAGTGACATCACT+AGG - chr1_4:49435403-49435422 None:intergenic 40.0%
GTCCAGATCCAAACACTAAT+AGG + chr1_4:49435429-49435448 Msa0167520:intron 40.0%
CGTCTTGATTCTAAACCACA+AGG + chr1_4:49435519-49435538 Msa0167520:intron 40.0%
GATTGCAAACTTTAGGCCTA+TGG + chr1_4:49435814-49435833 Msa0167520:CDS 40.0%
CTCAGAGATTGAATCTGGAT+AGG + chr1_4:49436039-49436058 Msa0167520:intron 40.0%
!! GCTAAAAGGTAGTACTGGTA+AGG + chr1_4:49436471-49436490 Msa0167520:intron 40.0%
AAAATGGCTCACTACTCGTT+AGG - chr1_4:49437778-49437797 None:intergenic 40.0%
GTGACTCTACTACTACTTGA+CGG - chr1_4:49438372-49438391 None:intergenic 40.0%
GTAGTAGTAGAGTCACACAA+AGG + chr1_4:49438376-49438395 Msa0167520:intron 40.0%
CCCCATTACATCTAGTTAGA+GGG - chr1_4:49438528-49438547 None:intergenic 40.0%
CCCTCTAACTAGATGTAATG+GGG + chr1_4:49438525-49438544 Msa0167520:intron 40.0%
ACCCCATTACATCTAGTTAG+AGG - chr1_4:49438529-49438548 None:intergenic 40.0%
CCATTCATGTTCATTGCAAC+GGG - chr1_4:49438582-49438601 None:intergenic 40.0%
ATTAATAGTGCTCCAGCCAT+CGG - chr1_4:49438608-49438627 None:intergenic 40.0%
CCTCATAGTTTCTGCTCATA+AGG - chr1_4:49438968-49438987 None:intergenic 40.0%
CCTTATGAGCAGAAACTATG+AGG + chr1_4:49438965-49438984 Msa0167520:intron 40.0%
GACGTGAAGGATCAAATCAT+CGG - chr1_4:49439004-49439023 None:intergenic 40.0%
!! CCAACCCAAAAGTGTTGAAA+GGG - chr1_4:49439285-49439304 None:intergenic 40.0%
!! TCCAACCCAAAAGTGTTGAA+AGG - chr1_4:49439286-49439305 None:intergenic 40.0%
AGAGGGTTCAATGTCATCAT+CGG - chr1_4:49440037-49440056 None:intergenic 40.0%
TGTAAATGTGAGATTGCTCC+GGG - chr1_4:49440237-49440256 None:intergenic 40.0%
GTCATCACTAACCAAGTGTT+GGG - chr1_4:49440873-49440892 None:intergenic 40.0%
TGTCATCACTAACCAAGTGT+TGG - chr1_4:49440874-49440893 None:intergenic 40.0%
CGATGCACAAATACAAGATG+TGG + chr1_4:49441235-49441254 Msa0167520:CDS 40.0%
AGATGCACAAATGCAAGATG+TGG + chr1_4:49441396-49441415 Msa0167520:CDS 40.0%
! CAACACAGTTGCTTTCACAG+GGG + chr1_4:49428718-49428737 Msa0167520:CDS 45.0%
GCATCAACAGAAGCTTCATC+AGG - chr1_4:49428782-49428801 None:intergenic 45.0%
TTTCTGCCACGTTTCTTTGC+CGG - chr1_4:49428815-49428834 None:intergenic 45.0%
! TCTCACACTTTCGCCCTTTT+CGG - chr1_4:49428858-49428877 None:intergenic 45.0%
! AAAAGGGCGAAAGTGTGAGA+AGG + chr1_4:49428858-49428877 Msa0167520:CDS 45.0%
AGATTAAGGGGAAACGTGGT+AGG + chr1_4:49428960-49428979 Msa0167520:CDS 45.0%
GAAACGTGGTAGGAAGAAGA+AGG + chr1_4:49428970-49428989 Msa0167520:CDS 45.0%
AGGAAGAAGAAGGTGGCAAT+TGG + chr1_4:49428980-49428999 Msa0167520:CDS 45.0%
AAGAAGGTGGCAATTGGTGT+CGG + chr1_4:49428986-49429005 Msa0167520:CDS 45.0%
TGAAATCAATGCTGCTCAGG+AGG + chr1_4:49429018-49429037 Msa0167520:CDS 45.0%
GAAATCAATGCTGCTCAGGA+GGG + chr1_4:49429019-49429038 Msa0167520:CDS 45.0%
AAATCAATGCTGCTCAGGAG+GGG + chr1_4:49429020-49429039 Msa0167520:CDS 45.0%
TGAAATGCACGGAATGCAAC+CGG + chr1_4:49429273-49429292 Msa0167520:CDS 45.0%
CCCTTAAACCCAATGCCTTA+AGG - chr1_4:49429494-49429513 None:intergenic 45.0%
AAAGAACTTCCACTTGAGGG+GGG - chr1_4:49429577-49429596 None:intergenic 45.0%
GAAAGAACTTCCACTTGAGG+GGG - chr1_4:49429578-49429597 None:intergenic 45.0%
AACGGTGACTTTGACAATGG+CGG - chr1_4:49429630-49429649 None:intergenic 45.0%
TCCAACGGTGACTTTGACAA+TGG - chr1_4:49429633-49429652 None:intergenic 45.0%
CGACAATGGTATCAGAGTCA+GGG - chr1_4:49429706-49429725 None:intergenic 45.0%
CCTGACTCTGATACCATTGT+CGG + chr1_4:49429704-49429723 Msa0167520:intron 45.0%
CTGACTCTGATACCATTGTC+GGG + chr1_4:49429705-49429724 Msa0167520:intron 45.0%
AGTCTGGGGATTGTCTACAT+TGG + chr1_4:49429738-49429757 Msa0167520:intron 45.0%
GTCTGGGGATTGTCTACATT+GGG + chr1_4:49429739-49429758 Msa0167520:intron 45.0%
AGCAACCACACAAGTGAGTT+TGG + chr1_4:49429767-49429786 Msa0167520:intron 45.0%
GGTATCCAAACTCACTTGTG+TGG - chr1_4:49429775-49429794 None:intergenic 45.0%
! GTATCCTGACTTGAAAGAGG+AGG + chr1_4:49430084-49430103 Msa0167520:CDS 45.0%
! ATGTCCTCCTCTTTCAAGTC+AGG - chr1_4:49430091-49430110 None:intergenic 45.0%
GACATTGCCAAGAAATGTCC+AGG + chr1_4:49430106-49430125 Msa0167520:CDS 45.0%
ACAGCATCCTGGACATTTCT+TGG - chr1_4:49430116-49430135 None:intergenic 45.0%
AAGAAATGTCCAGGATGCTG+TGG + chr1_4:49430115-49430134 Msa0167520:CDS 45.0%
TTGCAATTACCACAGCATCC+TGG - chr1_4:49430127-49430146 None:intergenic 45.0%
GAACTGACCTTGATAAGTGC+AGG - chr1_4:49430172-49430191 None:intergenic 45.0%
CTCAACCTCATGGTCATTGT+TGG - chr1_4:49430292-49430311 None:intergenic 45.0%
!! GTCTTTGGGATGAACATTGC+AGG + chr1_4:49430668-49430687 Msa0167520:intron 45.0%
! AAAAGAGCGTGTGTACTGGT+AGG + chr1_4:49430736-49430755 Msa0167520:intron 45.0%
! AAAGAGCGTGTGTACTGGTA+GGG + chr1_4:49430737-49430756 Msa0167520:intron 45.0%
CTTGACCATTCACGAATCTC+GGG - chr1_4:49431055-49431074 None:intergenic 45.0%
GTGAATGGTCAAGATCTGGA+TGG + chr1_4:49431062-49431081 Msa0167520:CDS 45.0%
!!! TCATCATCGGCTTTTGGACA+GGG - chr1_4:49431112-49431131 None:intergenic 45.0%
!!! ATCATCATCGGCTTTTGGAC+AGG - chr1_4:49431113-49431132 None:intergenic 45.0%
GCCGATGATGATTGTGATCA+TGG + chr1_4:49431121-49431140 Msa0167520:CDS 45.0%
CTGTGGAGACTTCTGATAGT+AGG + chr1_4:49431239-49431258 Msa0167520:CDS 45.0%
TGACGTAGATTTACTGCCCT+GGG - chr1_4:49431364-49431383 None:intergenic 45.0%
ATGACGTAGATTTACTGCCC+TGG - chr1_4:49431365-49431384 None:intergenic 45.0%
GGCAGTAAATCTACGTCATG+AGG + chr1_4:49431366-49431385 Msa0167520:CDS 45.0%
! TTTCAATGGCACTGGAGCAA+AGG + chr1_4:49431400-49431419 Msa0167520:CDS 45.0%
! TTCAATGGCACTGGAGCAAA+GGG + chr1_4:49431401-49431420 Msa0167520:CDS 45.0%
AATGCACGCCACATGACAAA+CGG - chr1_4:49431481-49431500 None:intergenic 45.0%
!! TGATTGCTTGGATTGGTGTG+AGG + chr1_4:49431552-49431571 Msa0167520:CDS 45.0%
GAATACAACTAGGGGATGCA+AGG - chr1_4:49432203-49432222 None:intergenic 45.0%
TATGAACTCGGCACAATGAC+GGG - chr1_4:49432492-49432511 None:intergenic 45.0%
CGGCAAGGAAGATATGAACT+CGG - chr1_4:49432504-49432523 None:intergenic 45.0%
CTTTAGGCAACTTCACAGCA+AGG - chr1_4:49432565-49432584 None:intergenic 45.0%
!!! TATGTTTTTGGGCCCATGTC+TGG - chr1_4:49432599-49432618 None:intergenic 45.0%
! TATGGATTTGCTCAGGAGCT+TGG + chr1_4:49432626-49432645 Msa0167520:CDS 45.0%
! ATGGATTTGCTCAGGAGCTT+GGG + chr1_4:49432627-49432646 Msa0167520:CDS 45.0%
ACTACAAGGCTAACAGCTCA+TGG - chr1_4:49432850-49432869 None:intergenic 45.0%
GGGAGCTACATGGTGATAAT+CGG + chr1_4:49433314-49433333 Msa0167520:CDS 45.0%
GGAGCTACATGGTGATAATC+GGG + chr1_4:49433315-49433334 Msa0167520:CDS 45.0%
CTACATGGTGATAATCGGGA+CGG + chr1_4:49433319-49433338 Msa0167520:CDS 45.0%
ATTCTTTAGACGGTGCTCTC+TGG + chr1_4:49433509-49433528 Msa0167520:CDS 45.0%
TTCTTTAGACGGTGCTCTCT+GGG + chr1_4:49433510-49433529 Msa0167520:CDS 45.0%
!! GTGCTCTCTGGGATATCTTT+CGG + chr1_4:49433521-49433540 Msa0167520:CDS 45.0%
!! CCTGCTTTAAAGGAGAGCAA+TGG - chr1_4:49433609-49433628 None:intergenic 45.0%
!! CCATTGCTCTCCTTTAAAGC+AGG + chr1_4:49433606-49433625 Msa0167520:CDS 45.0%
AATTGTGTGTGTGTCCGACA+AGG - chr1_4:49433805-49433824 None:intergenic 45.0%
ACAGAGTTGTGGGTACATAC+TGG + chr1_4:49433844-49433863 Msa0167520:intron 45.0%
TGGTACTTACACACGAGTAC+CGG + chr1_4:49433943-49433962 Msa0167520:intron 45.0%
!! AGATACCAGCTCTGAAGCAT+GGG - chr1_4:49433996-49434015 None:intergenic 45.0%
!! AAGATACCAGCTCTGAAGCA+TGG - chr1_4:49433997-49434016 None:intergenic 45.0%
TTCAGAGCTGGTATCTTACC+TGG + chr1_4:49434000-49434019 Msa0167520:intron 45.0%
TCAGAGCTGGTATCTTACCT+GGG + chr1_4:49434001-49434020 Msa0167520:intron 45.0%
TACATGACAGTCTTTGGGTC+AGG + chr1_4:49434051-49434070 Msa0167520:intron 45.0%
ACATGACAGTCTTTGGGTCA+GGG + chr1_4:49434052-49434071 Msa0167520:intron 45.0%
AGTCTTTGGGTCAGGGATAT+TGG + chr1_4:49434059-49434078 Msa0167520:intron 45.0%
AGTCTCCCACCATAAGTTCA+GGG + chr1_4:49434109-49434128 Msa0167520:intron 45.0%
AAAGTTCACTCGACAGACGA+AGG + chr1_4:49434298-49434317 Msa0167520:intron 45.0%
AAGTTCACTCGACAGACGAA+GGG + chr1_4:49434299-49434318 Msa0167520:intron 45.0%
TAGATGGCTAGGAAGACTGA+TGG + chr1_4:49434333-49434352 Msa0167520:intron 45.0%
AAGAGGCTTAAGGAGGAGTA+TGG + chr1_4:49434462-49434481 Msa0167520:CDS 45.0%
GACTTGTAGGAATTGAACCC+TGG + chr1_4:49434575-49434594 Msa0167520:intron 45.0%
CAGCTTCTGAACAAAAGTCC+AGG - chr1_4:49434596-49434615 None:intergenic 45.0%
! CTGGACTTTTGTTCAGAAGC+TGG + chr1_4:49434594-49434613 Msa0167520:CDS 45.0%
!!! GATGCTGTTTTCATTCCAGC+TGG + chr1_4:49434619-49434638 Msa0167520:CDS 45.0%
!! TTCAGATTTCGGACTTGGTG+GGG - chr1_4:49434649-49434668 None:intergenic 45.0%
! CTTCAGATTTCGGACTTGGT+GGG - chr1_4:49434650-49434669 None:intergenic 45.0%
CTGATGGGAATCACAGTCTT+GGG - chr1_4:49434806-49434825 None:intergenic 45.0%
ACTGATGGGAATCACAGTCT+TGG - chr1_4:49434807-49434826 None:intergenic 45.0%
! CTTGGTGCATGACTGCAAAA+CGG - chr1_4:49435086-49435105 None:intergenic 45.0%
CAAGTCTGCAGAGGACAAAT+TGG + chr1_4:49435189-49435208 Msa0167520:CDS 45.0%
!!! GCTGTTTTAGAATCTGGGCT+TGG + chr1_4:49435336-49435355 Msa0167520:intron 45.0%
AGAATCTGGGCTTGGCTTAT+TGG + chr1_4:49435344-49435363 Msa0167520:intron 45.0%
GTGACTTAGTTAGCACCTTG+TGG - chr1_4:49435537-49435556 None:intergenic 45.0%
TTACAGGTCTGGAGAAACCA+AGG + chr1_4:49435992-49436011 Msa0167520:CDS 45.0%
GTAGTTAGGTGTGGTGATCT+TGG + chr1_4:49436080-49436099 Msa0167520:intron 45.0%
TTGCCGCTAAAAGGTAGTAC+TGG + chr1_4:49436466-49436485 Msa0167520:intron 45.0%
TAACTAGTGTCCCATGGATC+AGG + chr1_4:49436916-49436935 Msa0167520:intron 45.0%
AACTAGTGTCCCATGGATCA+GGG + chr1_4:49436917-49436936 Msa0167520:intron 45.0%
GGTTGAAAAAGCTAGGTGTG+AGG + chr1_4:49437992-49438011 Msa0167520:intron 45.0%
GATGCAAGTAGAGCACATTG+GGG - chr1_4:49438026-49438045 None:intergenic 45.0%
GGATGCAAGTAGAGCACATT+GGG - chr1_4:49438027-49438046 None:intergenic 45.0%
! CAGGTTACATAGGGTACTCT+AGG - chr1_4:49438314-49438333 None:intergenic 45.0%
CCCGTTGCAATGAACATGAA+TGG + chr1_4:49438579-49438598 Msa0167520:intron 45.0%
TGAACATGAATGGTGTCCGA+TGG + chr1_4:49438589-49438608 Msa0167520:intron 45.0%
TGAGCAGAAACTATGAGGTG+TGG + chr1_4:49438970-49438989 Msa0167520:intron 45.0%
TATTAGAGCAGACGACGTGA+AGG - chr1_4:49439017-49439036 None:intergenic 45.0%
!! CCCTTTCAACACTTTTGGGT+TGG + chr1_4:49439282-49439301 Msa0167520:intron 45.0%
GTCACAACTTGCATGTGAAG+AGG - chr1_4:49440144-49440163 None:intergenic 45.0%
TGGAGGTCCTTATCAATGGT+GGG - chr1_4:49440169-49440188 None:intergenic 45.0%
TTGGAGGTCCTTATCAATGG+TGG - chr1_4:49440170-49440189 None:intergenic 45.0%
GTAAATGTGAGATTGCTCCG+GGG - chr1_4:49440236-49440255 None:intergenic 45.0%
CAAAAGTCAACTATCGAGGG+AGG + chr1_4:49440580-49440599 Msa0167520:intron 45.0%
AACTATCGAGGGAGGATCAT+CGG + chr1_4:49440588-49440607 Msa0167520:intron 45.0%
GCATTGGGGTTACCATATTC+CGG - chr1_4:49441121-49441140 None:intergenic 45.0%
CACTTTGGTCGCAGATAATG+TGG + chr1_4:49441193-49441212 Msa0167520:intron 45.0%
!! ATATATATATATATAAAGAA+AGG + chr1_4:49436745-49436764 Msa0167520:intron 5.0%
!!! AACTATTTTTTTTTTATTTT+TGG + chr1_4:49437825-49437844 Msa0167520:intron 5.0%
!! AATATTAAATATTAATAAGT+AGG + chr1_4:49439718-49439737 Msa0167520:intron 5.0%
AGCTTCATCAGGAGCAGCTA+TGG - chr1_4:49428771-49428790 None:intergenic 50.0%
AACGGAGAAGGAAGCCGAAA+AGG + chr1_4:49428841-49428860 Msa0167520:CDS 50.0%
ACGGAGAAGGAAGCCGAAAA+GGG + chr1_4:49428842-49428861 Msa0167520:CDS 50.0%
AACTAATGTGGAGGAGGAGC+TGG + chr1_4:49428928-49428947 Msa0167520:CDS 50.0%
ACGTGGTAGGAAGAAGAAGG+TGG + chr1_4:49428973-49428992 Msa0167520:CDS 50.0%
AATCAATGCTGCTCAGGAGG+GGG + chr1_4:49429021-49429040 Msa0167520:CDS 50.0%
TTATCTTGTGTGGGGTCACG+AGG + chr1_4:49429393-49429412 Msa0167520:intron 50.0%
TATCTTGTGTGGGGTCACGA+GGG + chr1_4:49429394-49429413 Msa0167520:intron 50.0%
! TAGTTGCTCTGAGCCCAATG+GGG - chr1_4:49429435-49429454 None:intergenic 50.0%
! CTAGTTGCTCTGAGCCCAAT+GGG - chr1_4:49429436-49429455 None:intergenic 50.0%
! TCTAGTTGCTCTGAGCCCAA+TGG - chr1_4:49429437-49429456 None:intergenic 50.0%
AAGAACTTCCACTTGAGGGG+GGG - chr1_4:49429576-49429595 None:intergenic 50.0%
GCCATTGTCAAAGTCACCGT+TGG + chr1_4:49429629-49429648 Msa0167520:intron 50.0%
GTTCAGGTCATGGGTTCCAA+CGG - chr1_4:49429648-49429667 None:intergenic 50.0%
TCAGAGTCAGGGTTCGACAA+GGG - chr1_4:49429695-49429714 None:intergenic 50.0%
ATCAGAGTCAGGGTTCGACA+AGG - chr1_4:49429696-49429715 None:intergenic 50.0%
CCGACAATGGTATCAGAGTC+AGG - chr1_4:49429707-49429726 None:intergenic 50.0%
TACCATTGTCGGGTCATGAG+AGG + chr1_4:49429715-49429734 Msa0167520:intron 50.0%
! TGAGACTGGTTCAACAGCTG+AGG + chr1_4:49429923-49429942 Msa0167520:intron 50.0%
GGACTCACCTGCACTTATCA+AGG + chr1_4:49430162-49430181 Msa0167520:CDS 50.0%
ACTTGGAGAGCTCAACCTCA+TGG - chr1_4:49430302-49430321 None:intergenic 50.0%
GCAAGAAGTGAGACTCTTGG+AGG - chr1_4:49430417-49430436 None:intergenic 50.0%
! AAGAGCGTGTGTACTGGTAG+GGG + chr1_4:49430738-49430757 Msa0167520:intron 50.0%
CATGCAGATAATCACGCCCT+CGG - chr1_4:49430976-49430995 None:intergenic 50.0%
CCATTCACGAATCTCGGGTT+GGG - chr1_4:49431050-49431069 None:intergenic 50.0%
ACCATTCACGAATCTCGGGT+TGG - chr1_4:49431051-49431070 None:intergenic 50.0%
! TCAATGGCACTGGAGCAAAG+GGG + chr1_4:49431402-49431421 Msa0167520:CDS 50.0%
AGACTAGATGGTCTGCTCTC+TGG + chr1_4:49431913-49431932 Msa0167520:intron 50.0%
GACTAGATGGTCTGCTCTCT+GGG + chr1_4:49431914-49431933 Msa0167520:intron 50.0%
CATGAAGAGTGACCAGCACA+AGG + chr1_4:49431938-49431957 Msa0167520:intron 50.0%
ATGAACTCGGCACAATGACG+GGG - chr1_4:49432491-49432510 None:intergenic 50.0%
AGCAGATCCATTGTCCTTCC+TGG + chr1_4:49433088-49433107 Msa0167520:intron 50.0%
AGACAAAGAACTGGCCAGGA+AGG - chr1_4:49433105-49433124 None:intergenic 50.0%
AGCACCTTGAGCAAGACAAG+AGG + chr1_4:49433293-49433312 Msa0167520:CDS 50.0%
GCACCTTGAGCAAGACAAGA+GGG + chr1_4:49433294-49433313 Msa0167520:CDS 50.0%
CAAGACAAGAGGGAGCTACA+TGG + chr1_4:49433304-49433323 Msa0167520:CDS 50.0%
CTGGGATATCTTTCGGAGAG+AGG + chr1_4:49433528-49433547 Msa0167520:CDS 50.0%
TGTCGGTGCAACAGAGTTGT+GGG + chr1_4:49433834-49433853 Msa0167520:intron 50.0%
GGTACTTACACACGAGTACC+GGG + chr1_4:49433944-49433963 Msa0167520:intron 50.0%
!! TTACACACGAGTACCGGGTT+TGG + chr1_4:49433949-49433968 Msa0167520:intron 50.0%
!! TACACACGAGTACCGGGTTT+GGG + chr1_4:49433950-49433969 Msa0167520:intron 50.0%
GAGACTGAGTGAATGCAGGT+GGG - chr1_4:49434095-49434114 None:intergenic 50.0%
CAGTCTCCCACCATAAGTTC+AGG + chr1_4:49434108-49434127 Msa0167520:intron 50.0%
GTCTCCCACCATAAGTTCAG+GGG + chr1_4:49434110-49434129 Msa0167520:intron 50.0%
AAGGGCCTGCTGTATGTAGA+TGG + chr1_4:49434317-49434336 Msa0167520:intron 50.0%
CCTAGCCATCTACATACAGC+AGG - chr1_4:49434325-49434344 None:intergenic 50.0%
CCTGCTGTATGTAGATGGCT+AGG + chr1_4:49434322-49434341 Msa0167520:intron 50.0%
CCTTCAGATTTCGGACTTGG+TGG - chr1_4:49434651-49434670 None:intergenic 50.0%
CCACCAAGTCCGAAATCTGA+AGG + chr1_4:49434648-49434667 Msa0167520:CDS 50.0%
! CGTTTTGCAGTCATGCACCA+AGG + chr1_4:49435084-49435103 Msa0167520:intron 50.0%
CGAGTGCTTTCGTTTGACAG+AGG + chr1_4:49435141-49435160 Msa0167520:CDS 50.0%
GTCTGCAGAGGACAAATTGG+AGG + chr1_4:49435192-49435211 Msa0167520:CDS 50.0%
GCTTGATCTGGTCGAGAAGT+TGG + chr1_4:49435775-49435794 Msa0167520:CDS 50.0%
TGATCTGGTCGAGAAGTTGG+AGG + chr1_4:49435778-49435797 Msa0167520:CDS 50.0%
TCGAGAAGTTGGAGGAAGCA+AGG + chr1_4:49435786-49435805 Msa0167520:CDS 50.0%
TTGAGTCGCGTAGTTAGGTG+TGG + chr1_4:49436071-49436090 Msa0167520:intron 50.0%
GTTATGTCTGGCACACCTTG+AGG + chr1_4:49436144-49436163 Msa0167520:intron 50.0%
TGTTGGGATCGTGACACACT+TGG + chr1_4:49436518-49436537 Msa0167520:intron 50.0%
GTTGGGATCGTGACACACTT+GGG + chr1_4:49436519-49436538 Msa0167520:intron 50.0%
CGGATGCAAGTAGAGCACAT+TGG - chr1_4:49438028-49438047 None:intergenic 50.0%
CTGATGCAGAGGATTGAGAG+AGG - chr1_4:49439791-49439810 None:intergenic 50.0%
GGAGGTCCTTATCAATGGTG+GGG - chr1_4:49440168-49440187 None:intergenic 50.0%
ACAACAGCAGGAATGAGCGA+AGG - chr1_4:49440206-49440225 None:intergenic 50.0%
GGCGACATGTCACACATCTA+TGG + chr1_4:49440301-49440320 Msa0167520:intron 50.0%
ACGTTTCTTTGCCGGAGGAG+CGG - chr1_4:49428807-49428826 None:intergenic 55.0%
TGAGAAGGAGTGAGCGTGCT+AGG + chr1_4:49428873-49428892 Msa0167520:CDS 55.0%
GGGCAGGGTTGTGAAATGCA+CGG + chr1_4:49429262-49429281 Msa0167520:CDS 55.0%
ATCTTGTGTGGGGTCACGAG+GGG + chr1_4:49429395-49429414 Msa0167520:intron 55.0%
! AGTTGCTCTGAGCCCAATGG+GGG - chr1_4:49429434-49429453 None:intergenic 55.0%
CATTTATGCCCCCCCTCAAG+TGG + chr1_4:49429565-49429584 Msa0167520:intron 55.0%
GGGTTCGACAAGGGATCAAC+CGG - chr1_4:49429686-49429705 None:intergenic 55.0%
CTCCTCTCATGACCCGACAA+TGG - chr1_4:49429720-49429739 None:intergenic 55.0%
TCGGGTCATGAGAGGAGTCT+GGG + chr1_4:49429723-49429742 Msa0167520:intron 55.0%
AAGGTTGGGCACTCTGTGAG+AGG - chr1_4:49429838-49429857 None:intergenic 55.0%
! GACTGGTTCAACAGCTGAGG+AGG + chr1_4:49429926-49429945 Msa0167520:intron 55.0%
CACGAAGCTCGCAGCAACAA+AGG - chr1_4:49430904-49430923 None:intergenic 55.0%
CTTTGTTGCTGCGAGCTTCG+TGG + chr1_4:49430902-49430921 Msa0167520:CDS 55.0%
! CTTCGTGGTGGGAAGCTTCT+AGG + chr1_4:49430917-49430936 Msa0167520:CDS 55.0%
! CGAGGGCGTGATTATCTGCA+TGG + chr1_4:49430974-49430993 Msa0167520:CDS 55.0%
GGGCGTGATTATCTGCATGG+TGG + chr1_4:49430977-49430996 Msa0167520:CDS 55.0%
CCCAACCCGAGATTCGTGAA+TGG + chr1_4:49431047-49431066 Msa0167520:CDS 55.0%
! GGATGGCTTGCAGACAGTGA+TGG + chr1_4:49431079-49431098 Msa0167520:CDS 55.0%
GCTGGGAACCGTTTGTCATG+TGG + chr1_4:49431470-49431489 Msa0167520:CDS 55.0%
!! CTCGCCTGGACTGGCTTAAT+TGG + chr1_4:49432408-49432427 Msa0167520:CDS 55.0%
GAGGCCAATTAAGCCAGTCC+AGG - chr1_4:49432415-49432434 None:intergenic 55.0%
!! GGACTGGCTTAATTGGCCTC+AGG + chr1_4:49432415-49432434 Msa0167520:CDS 55.0%
! GATTTGCTCAGGAGCTTGGG+CGG + chr1_4:49432630-49432649 Msa0167520:CDS 55.0%
ATTTGCTCAGGAGCTTGGGC+GGG + chr1_4:49432631-49432650 Msa0167520:CDS 55.0%
GAACTGGCCAGGAAGGACAA+TGG - chr1_4:49433098-49433117 None:intergenic 55.0%
GCACAGACAAAGAACTGGCC+AGG - chr1_4:49433109-49433128 None:intergenic 55.0%
GCTCCCTCTTGTCTTGCTCA+AGG - chr1_4:49433300-49433319 None:intergenic 55.0%
! GTGTCGGTGCAACAGAGTTG+TGG + chr1_4:49433833-49433852 Msa0167520:intron 55.0%
GGAGACTGAGTGAATGCAGG+TGG - chr1_4:49434096-49434115 None:intergenic 55.0%
GTGGGAGACTGAGTGAATGC+AGG - chr1_4:49434099-49434118 None:intergenic 55.0%
GCAGCCCCTGAACTTATGGT+GGG - chr1_4:49434117-49434136 None:intergenic 55.0%
AGCAGCCCCTGAACTTATGG+TGG - chr1_4:49434118-49434137 None:intergenic 55.0%
ACCATAAGTTCAGGGGCTGC+TGG + chr1_4:49434117-49434136 Msa0167520:intron 55.0%
ACCAGCAGCCCCTGAACTTA+TGG - chr1_4:49434121-49434140 None:intergenic 55.0%
! AACTAGAACCTCAGGGGCGT+TGG - chr1_4:49436777-49436796 None:intergenic 55.0%
AGTGTCCCATGGATCAGGGA+CGG + chr1_4:49436921-49436940 Msa0167520:intron 55.0%
TGGATCCGTCCCTGATCCAT+GGG - chr1_4:49436929-49436948 None:intergenic 55.0%
TTGGATCCGTCCCTGATCCA+TGG - chr1_4:49436930-49436949 None:intergenic 55.0%
GCTCTACTTGCATCCGTGTC+TGG + chr1_4:49438032-49438051 Msa0167520:intron 55.0%
CTACTTGCATCCGTGTCTGG+CGG + chr1_4:49438035-49438054 Msa0167520:intron 55.0%
TACTTGCATCCGTGTCTGGC+GGG + chr1_4:49438036-49438055 Msa0167520:intron 55.0%
CATGAATGGTGTCCGATGGC+TGG + chr1_4:49438593-49438612 Msa0167520:intron 55.0%
GTGACGCCCCACCATTGATA+AGG + chr1_4:49440159-49440178 Msa0167520:intron 55.0%
CTGCTGTTGTAGCTTAGCCC+CGG + chr1_4:49440216-49440235 Msa0167520:intron 55.0%
GTTGTCTTCTTCCCCCGCCA+TGG - chr1_4:49428690-49428709 None:intergenic 60.0%
TGTTGATGCTGCCGCTCCTC+CGG + chr1_4:49428793-49428812 Msa0167520:CDS 60.0%
GCTCCTCCGGCAAAGAAACG+TGG + chr1_4:49428806-49428825 Msa0167520:CDS 60.0%
CTGCCACGTTTCTTTGCCGG+AGG - chr1_4:49428812-49428831 None:intergenic 60.0%
GTCGGGTCATGAGAGGAGTC+TGG + chr1_4:49429722-49429741 Msa0167520:intron 60.0%
CGGGTCATGAGAGGAGTCTG+GGG + chr1_4:49429724-49429743 Msa0167520:intron 60.0%
TGTTGCTGCGAGCTTCGTGG+TGG + chr1_4:49430905-49430924 Msa0167520:CDS 60.0%
GTTGCTGCGAGCTTCGTGGT+GGG + chr1_4:49430906-49430925 Msa0167520:CDS 60.0%
! CGTGGTGGGAAGCTTCTAGG+TGG + chr1_4:49430920-49430939 Msa0167520:CDS 60.0%
TGGGTACACAAAGGCTCGCC+TGG + chr1_4:49432394-49432413 Msa0167520:CDS 60.0%
ACACAAAGGCTCGCCTGGAC+TGG + chr1_4:49432399-49432418 Msa0167520:CDS 60.0%
TTTGCTCAGGAGCTTGGGCG+GGG + chr1_4:49432632-49432651 Msa0167520:CDS 60.0%
GGAGTCCCATGCTTCAGAGC+TGG + chr1_4:49433988-49434007 Msa0167520:intron 60.0%
CTGAGCTGGAGATAGAGCCC+AGG - chr1_4:49434021-49434040 None:intergenic 60.0%
! ACTTGGTGGGGACAACCAGC+TGG - chr1_4:49434637-49434656 None:intergenic 60.0%
GGAAAATGCCAACGCCCCTG+AGG + chr1_4:49436766-49436785 Msa0167520:intron 60.0%
ACTTGCATCCGTGTCTGGCG+GGG + chr1_4:49438037-49438056 Msa0167520:intron 60.0%
ACTACTGTCCCCGCCAGACA+CGG - chr1_4:49438048-49438067 None:intergenic 60.0%
CGGGGCTAAGCTACAACAGC+AGG - chr1_4:49440218-49440237 None:intergenic 60.0%
AGCCTTGGGACCACCCCCAT+TGG + chr1_4:49429418-49429437 Msa0167520:intron 65.0%
GCCTTGGGACCACCCCCATT+GGG + chr1_4:49429419-49429438 Msa0167520:intron 65.0%
! TGCTCTGAGCCCAATGGGGG+TGG - chr1_4:49429431-49429450 None:intergenic 65.0%
TGGGGTCACGAGGGGAGCCT+TGG + chr1_4:49429403-49429422 Msa0167520:intron 70.0%
GGGGTCACGAGGGGAGCCTT+GGG + chr1_4:49429404-49429423 Msa0167520:intron 70.0%
GCCCAATGGGGGTGGTCCCA+AGG - chr1_4:49429423-49429442 None:intergenic 70.0%
!! TCGGGTTGGGCAGCAGCACG+AGG - chr1_4:49431037-49431056 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 49428468 49441424 49428468 ID=Msa0167520;Name=Msa0167520
chr1_4 mRNA 49428468 49441424 49428468 ID=Msa0167520-mRNA-1;Parent=Msa0167520;Name=Msa0167520-mRNA-1;_AED=0.12;_eAED=0.13;_QI=221|0.28|0.2|0.86|1|1|15|0|1018
chr1_4 exon 49428468 49429075 49428468 ID=Msa0167520-mRNA-1:exon:14527;Parent=Msa0167520-mRNA-1
chr1_4 exon 49429191 49429327 49429191 ID=Msa0167520-mRNA-1:exon:14528;Parent=Msa0167520-mRNA-1
chr1_4 exon 49430084 49430183 49430084 ID=Msa0167520-mRNA-1:exon:14529;Parent=Msa0167520-mRNA-1
chr1_4 exon 49430267 49430405 49430267 ID=Msa0167520-mRNA-1:exon:14530;Parent=Msa0167520-mRNA-1
chr1_4 exon 49430690 49430753 49430690 ID=Msa0167520-mRNA-1:exon:14531;Parent=Msa0167520-mRNA-1
chr1_4 exon 49430832 49431573 49430832 ID=Msa0167520-mRNA-1:exon:14532;Parent=Msa0167520-mRNA-1
chr1_4 exon 49432365 49432694 49432365 ID=Msa0167520-mRNA-1:exon:14533;Parent=Msa0167520-mRNA-1
chr1_4 exon 49433217 49433627 49433217 ID=Msa0167520-mRNA-1:exon:14534;Parent=Msa0167520-mRNA-1
chr1_4 exon 49434411 49434483 49434411 ID=Msa0167520-mRNA-1:exon:14535;Parent=Msa0167520-mRNA-1
chr1_4 exon 49434584 49434669 49434584 ID=Msa0167520-mRNA-1:exon:14536;Parent=Msa0167520-mRNA-1
chr1_4 exon 49435094 49435213 49435094 ID=Msa0167520-mRNA-1:exon:14537;Parent=Msa0167520-mRNA-1
chr1_4 exon 49435749 49435835 49435749 ID=Msa0167520-mRNA-1:exon:14538;Parent=Msa0167520-mRNA-1
chr1_4 exon 49435943 49436021 49435943 ID=Msa0167520-mRNA-1:exon:14539;Parent=Msa0167520-mRNA-1
chr1_4 exon 49441044 49441127 49441044 ID=Msa0167520-mRNA-1:exon:14540;Parent=Msa0167520-mRNA-1
chr1_4 exon 49441207 49441424 49441207 ID=Msa0167520-mRNA-1:exon:14541;Parent=Msa0167520-mRNA-1
chr1_4 five_prime_UTR 49428468 49428688 49428468 ID=Msa0167520-mRNA-1:five_prime_utr;Parent=Msa0167520-mRNA-1
chr1_4 CDS 49428689 49429075 49428689 ID=Msa0167520-mRNA-1:cds;Parent=Msa0167520-mRNA-1
chr1_4 CDS 49429191 49429327 49429191 ID=Msa0167520-mRNA-1:cds;Parent=Msa0167520-mRNA-1
chr1_4 CDS 49430084 49430183 49430084 ID=Msa0167520-mRNA-1:cds;Parent=Msa0167520-mRNA-1
chr1_4 CDS 49430267 49430405 49430267 ID=Msa0167520-mRNA-1:cds;Parent=Msa0167520-mRNA-1
chr1_4 CDS 49430690 49430753 49430690 ID=Msa0167520-mRNA-1:cds;Parent=Msa0167520-mRNA-1
chr1_4 CDS 49430832 49431573 49430832 ID=Msa0167520-mRNA-1:cds;Parent=Msa0167520-mRNA-1
chr1_4 CDS 49432365 49432694 49432365 ID=Msa0167520-mRNA-1:cds;Parent=Msa0167520-mRNA-1
chr1_4 CDS 49433217 49433627 49433217 ID=Msa0167520-mRNA-1:cds;Parent=Msa0167520-mRNA-1
chr1_4 CDS 49434411 49434483 49434411 ID=Msa0167520-mRNA-1:cds;Parent=Msa0167520-mRNA-1
chr1_4 CDS 49434584 49434669 49434584 ID=Msa0167520-mRNA-1:cds;Parent=Msa0167520-mRNA-1
chr1_4 CDS 49435094 49435213 49435094 ID=Msa0167520-mRNA-1:cds;Parent=Msa0167520-mRNA-1
chr1_4 CDS 49435749 49435835 49435749 ID=Msa0167520-mRNA-1:cds;Parent=Msa0167520-mRNA-1
chr1_4 CDS 49435943 49436021 49435943 ID=Msa0167520-mRNA-1:cds;Parent=Msa0167520-mRNA-1
chr1_4 CDS 49441044 49441127 49441044 ID=Msa0167520-mRNA-1:cds;Parent=Msa0167520-mRNA-1
chr1_4 CDS 49441207 49441424 49441207 ID=Msa0167520-mRNA-1:cds;Parent=Msa0167520-mRNA-1
Gene Sequence

>Msa0167520

ATGGCGGGGGAAGAAGACAACAACAACAACAACACAGTTGCTTTCACAGGGGAAGAATCCATTCCTGATAATCAAGAAACCATAGCTGCTCCTGATGAAGCTTCTGTTGATGCTGCCGCTCCTCCGGCAAAGAAACGTGGCAGAAAGAGAAAAACGGAGAAGGAAGCCGAAAAGGGCGAAAGTGTGAGAAGGAGTGAGCGTGCTAGGAAGAATAGTAGATCGTTGAATGAGGATTACTTAACTAATGTGGAGGAGGAGCTGGAACTGAAGAAGATTAAGGGGAAACGTGGTAGGAAGAAGAAGGTGGCAATTGGTGTCGGTGTTTCTGATGAAATCAATGCTGCTCAGGAGGGGGAGAAACCTGAATGCATTGAACAGCAACAGATGGGGATTGAAGATGTGTCCTTATTGGTCTGTAATAAGGACACTAATTGCCATCAATGTAAAAGAAATGACAAGGGCAGGGTTGTGAAATGCACGGAATGCAACCGGAAGAAATTTTGCATACCTTGTATTAACAGTTGGTATCCTGACTTGAAAGAGGAGGACATTGCCAAGAAATGTCCAGGATGCTGTGGTAATTGCAATTGCAAAGCATGCTTGGACTCACCTGCACTTATCAAGGCAATTAAAGAGAAGCCAGAAACCAACAATGACCATGAGGTTGAGCTCTCCAAGTATATGCTGAAAATACTTCTTCCGTATTTAAGACGATTGGATGAAGAACAAATGGCTGAGAAGGAGATAGAAGCAAAGAGACAAGGGATCTCACGTTCTGAGCTAAAAATAAAAGCCGCAGATATCCCTAAAAAAGAGCGTGTGTACTGTGACAACTGCAAAACGTCAATATTTGACTACCACAGAAGCTGTACAAAATGCTCTTTTGACATTTGTCTCCTTTGTTGCTGCGAGCTTCGTGGTGGGAAGCTTCTAGGTGGTGCAGATCCAATCGAGTTTGAGTTTATCTTCCGAGGGCGTGATTATCTGCATGGTGGAAATGATAATGAAGAGAGAGTAAATGAAAGTGAACCTCGTGCTGCTGCCCAACCCGAGATTCGTGAATGGTCAAGATCTGGATGGCTTGCAGACAGTGATGGTAGCATTCCCTGTCCAAAAGCCGATGATGATTGTGATCATGGTTTCCTTGAACTGAGAAGCATACTTCCACAAAATTGCATCTCCGAGTTAGTATGTAAAGCAAAAGAACATGAAGAAACAATTAAGCTTCAAGTTGCTGTGGAGACTTCTGATAGTAGGTGTTCTTGTTTGAAGCCTGTTTTGAATGCATCTGACATACACAATAGCACAAGGAAGGCAGCTTCTCGTGAAGATTCCAGTGAGAACTTCTTATACTGTCCCAGGGCAGTAAATCTACGTCATGAGGATTTAAGACATTTTCAATGGCACTGGAGCAAAGGGGAGCCTATAATTGTCAGCAATGTACTTGAATGTACATCAGGTTTAAGCTGGGAACCGTTTGTCATGTGGCGTGCATTCCGTCAGATACGTAATACCAAGCAAAAAACACTTTTGGATGTGAAAACTATTGATTGCTTGGATTGGTGTGAGGGAGATCTTAATTTGCACCAATTCTTTACTGGGTACACAAAGGCTCGCCTGGACTGGCTTAATTGGCCTCAGGTTTTGAAACTGAAAGATTGGCCTCCTTCTAATTTATTTGAGGAAAGTTTGCCCCGTCATTGTGCCGAGTTCATATCTTCCTTGCCGTTCAAAGAATATACAGATCCTTTCAATGGTGTTCTAAACCTTGCTGTGAAGTTGCCTAAAGATGTTTTACAGCCAGACATGGGCCCAAAAACATATATTGCTTATGGATTTGCTCAGGAGCTTGGGCGGGGTGATTCTGTGACTAAGCTCCATTGTGATATGTCAGATGCAGTAAATGTGTTGACTCATATTGCTGAAGTGAAGCTGGATTCTAAGGGCATTAATGCCATTAAAAAACTGACACAAAAGCACCTTGAGCAAGACAAGAGGGAGCTACATGGTGATAATCGGGACGGAGAGCCCAAGATTGACATGCTTGATAATTCATCTTCTTCCATAAAGGCTTCATACGAGCAAAATAGTGTTCGATTTGTGGAAAATGGAAGTGGAATATGTGATGAAAAGTTGGTTGATCCAGAGCTCAAAGAAGTTGATAAAGAAAATAGTTTATTGGTTGGGGGAAATTCTTTAGACGGTGCTCTCTGGGATATCTTTCGGAGAGAGGATGTACCTAAATTGGAAGAATATTTAAAGAAGCATTTCAGAGAGTTCAGGCATGTCCATTGCTCTCCTTTAAAGCAGGTTGTTCACCCCATCCATGATCAGACGTTTTATTTGACTATCGAGCATAAAAAGAGGCTTAAGGAGGAGTATGGAATTGAACCCTGGACTTTTGTTCAGAAGCTGGGAGATGCTGTTTTCATTCCAGCTGGTTGTCCCCACCAAGTCCGAAATCTGAAGTCATGCACCAAGGTTGCACTTGATTTTGTCTCTCCTGAAAATATTGGCGAGTGCTTTCGTTTGACAGAGGAATTCCGCAAACTTCCAGTAAATCACAAGTCTGCAGAGGACAAATTGGAGGTGAAGAAAATGATTATGTATGCTATGCTTGATCTGGTCGAGAAGTTGGAGGAAGCAAGGTTAGTGATTGCAAACTTTAGGCCTATGGCTCACGGTTCGTCTGTTTATATCATGAAATTGATGTCTGTCATTCAATTTACAGGTCTGGAGAAACCAAGGTTCCTATATCTTAATAATGCATCAACTTTTCAAGGAACTCATGATAATGAATCAGAATATGATGAACCAAACTATTATGAACCGGAATATGATAATGTGGAAGTTGATGAAAATTTTGACGATGCACAAATACAAGATGTGGATATGGAAGACACAATTAATGAAAATTTTGGAGATGCACAAATACAAAATGTGGATATGGAGTCACAATTAATGAAAATTTTGAAGATGCACATATACAAGATGTGGATATGGAGGACACAGTTAATGAAAATTTTGAAGATGCACAAATGCAAGATGTGGATATAG
Protein sequence

>Msa0167520

MAGEEDNNNNNTVAFTGEESIPDNQETIAAPDEASVDAAAPPAKKRGRKRKTEKEAEKGESVRRSERARKNSRSLNEDYLTNVEEELELKKIKGKRGRKKKVAIGVGVSDEINAAQEGEKPECIEQQQMGIEDVSLLVCNKDTNCHQCKRNDKGRVVKCTECNRKKFCIPCINSWYPDLKEEDIAKKCPGCCGNCNCKACLDSPALIKAIKEKPETNNDHEVELSKYMLKILLPYLRRLDEEQMAEKEIEAKRQGISRSELKIKAADIPKKERVYCDNCKTSIFDYHRSCTKCSFDICLLCCCELRGGKLLGGADPIEFEFIFRGRDYLHGGNDNEERVNESEPRAAAQPEIREWSRSGWLADSDGSIPCPKADDDCDHGFLELRSILPQNCISELVCKAKEHEETIKLQVAVETSDSRCSCLKPVLNASDIHNSTRKAASREDSSENFLYCPRAVNLRHEDLRHFQWHWSKGEPIIVSNVLECTSGLSWEPFVMWRAFRQIRNTKQKTLLDVKTIDCLDWCEGDLNLHQFFTGYTKARLDWLNWPQVLKLKDWPPSNLFEESLPRHCAEFISSLPFKEYTDPFNGVLNLAVKLPKDVLQPDMGPKTYIAYGFAQELGRGDSVTKLHCDMSDAVNVLTHIAEVKLDSKGINAIKKLTQKHLEQDKRELHGDNRDGEPKIDMLDNSSSSIKASYEQNSVRFVENGSGICDEKLVDPELKEVDKENSLLVGGNSLDGALWDIFRREDVPKLEEYLKKHFREFRHVHCSPLKQVVHPIHDQTFYLTIEHKKRLKEEYGIEPWTFVQKLGDAVFIPAGCPHQVRNLKSCTKVALDFVSPENIGECFRLTEEFRKLPVNHKSAEDKLEVKKMIMYAMLDLVEKLEEARLVIANFRPMAHGSSVYIMKLMSVIQFTGLEKPRFLYLNNASTFQGTHDNESEYDEPNYYEPEYDNVEVDENFDDAQIQDVDMEDTINENFGDAQIQNVDMESQLMKILKMHIYKMWIWRTQLMKILKMHKCKMWI*