Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0378240 | KEH35605.1 | 97.032 | 438 | 13 | 0 | 1 | 438 | 18 | 455 | 0.0 | 892 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0378240 | sp|Q8RX26|RGLG3_ARATH | 70.811 | 370 | 102 | 3 | 72 | 438 | 1 | 367 | 0.0 | 552 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0378240 | A0A072VBP5 | 97.032 | 438 | 13 | 0 | 1 | 438 | 18 | 455 | 0.0 | 892 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0107830 | Msa0378240 | 0.805427 | 1.342166e-49 | -8.615850e-47 |
| Msa0129290 | Msa0378240 | 0.800583 | 1.346642e-48 | -8.615850e-47 |
| Msa0196420 | Msa0378240 | 0.803999 | 2.666106e-49 | -8.615850e-47 |
| Msa0199860 | Msa0378240 | 0.827874 | 1.229294e-54 | -8.615850e-47 |
| Msa0207930 | Msa0378240 | 0.809766 | 1.609105e-50 | -8.615850e-47 |
| Msa0207970 | Msa0378240 | 0.824988 | 5.987463e-54 | -8.615850e-47 |
| Msa0378240 | Msa0421080 | 0.804910 | 1.721645e-49 | -8.615850e-47 |
| Msa0378240 | Msa0427520 | 0.908332 | 1.920047e-81 | -8.615850e-47 |
| Msa0378240 | Msa0429050 | 0.804301 | 2.307420e-49 | -8.615850e-47 |
| Msa0378240 | Msa0463890 | 0.805720 | 1.164884e-49 | -8.615850e-47 |
| Msa0378240 | Msa0470350 | 0.817805 | 2.725052e-52 | -8.615850e-47 |
| Msa0378240 | Msa0473940 | 0.937181 | 5.257396e-98 | -8.615850e-47 |
| Msa0378240 | Msa0518340 | 0.947477 | 6.236193e-106 | -8.615850e-47 |
| Msa0378240 | Msa0565120 | 0.802394 | 5.729172e-49 | -8.615850e-47 |
| Msa0378240 | Msa0629030 | 0.825700 | 4.063766e-54 | -8.615850e-47 |
| Msa0378240 | Msa0657260 | 0.840995 | 6.214117e-58 | -8.615850e-47 |
| Msa0378240 | Msa0666580 | 0.821054 | 4.950556e-53 | -8.615850e-47 |
| Msa0378240 | Msa0694690 | 0.803709 | 3.063393e-49 | -8.615850e-47 |
| Msa0378240 | Msa0701490 | 0.832888 | 7.311001e-56 | -8.615850e-47 |
| Msa0378240 | Msa0701560 | 0.834748 | 2.505090e-56 | -8.615850e-47 |
| Msa0378240 | Msa0721260 | 0.806528 | 7.872949e-50 | -8.615850e-47 |
| Msa0378240 | Msa0728520 | 0.800568 | 1.355789e-48 | -8.615850e-47 |
| Msa0378240 | Msa0776540 | 0.803847 | 2.867240e-49 | -8.615850e-47 |
| Msa0378240 | Msa0874750 | 0.803406 | 3.539432e-49 | -8.615850e-47 |
| Msa0378240 | Msa0976400 | 0.809968 | 1.455364e-50 | -8.615850e-47 |
| Msa0378240 | Msa1061840 | 0.818963 | 1.489722e-52 | -8.615850e-47 |
| Msa0378240 | Msa1107510 | 0.812217 | 4.738901e-51 | -8.615850e-47 |
| Msa0378240 | Msa1151070 | 0.805497 | 1.297602e-49 | -8.615850e-47 |
| Msa0378240 | Msa1263500 | 0.803097 | 4.101703e-49 | -8.615850e-47 |
| Msa0378240 | Msa1399430 | -0.818786 | 1.634723e-52 | -8.615850e-47 |
| Msa0378240 | Msa1438160 | 0.809840 | 1.551159e-50 | -8.615850e-47 |
| Msa0378240 | Msa1459930 | 0.802740 | 4.860369e-49 | -8.615850e-47 |
| Msa0257930 | Msa0378240 | 0.860563 | 1.893077e-63 | -8.615850e-47 |
| Msa0267900 | Msa0378240 | 0.804090 | 2.552150e-49 | -8.615850e-47 |
| Msa0271700 | Msa0378240 | 0.800126 | 1.667918e-48 | -8.615850e-47 |
| Msa0291880 | Msa0378240 | 0.839325 | 1.695230e-57 | -8.615850e-47 |
| Msa0296930 | Msa0378240 | 0.871676 | 5.697871e-67 | -8.615850e-47 |
| Msa0312300 | Msa0378240 | 0.801693 | 7.980975e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0378240 | MtrunA17_Chr3g0130411 | 97.032 | 438 | 13 | 0 | 1 | 438 | 1 | 438 | 0.0 | 892 |
| Msa0378240 | MtrunA17_Chr3g0116661 | 61.436 | 376 | 126 | 3 | 77 | 437 | 64 | 435 | 7.43e-168 | 478 |
| Msa0378240 | MtrunA17_Chr3g0123481 | 60.500 | 400 | 134 | 5 | 62 | 437 | 71 | 470 | 9.48e-168 | 479 |
| Msa0378240 | MtrunA17_Chr6g0458051 | 58.690 | 397 | 126 | 3 | 75 | 437 | 94 | 486 | 2.27e-167 | 479 |
| Msa0378240 | MtrunA17_Chr7g0226791 | 63.536 | 362 | 123 | 4 | 85 | 437 | 84 | 445 | 2.43e-166 | 475 |
| Msa0378240 | MtrunA17_Chr8g0381321 | 59.126 | 389 | 143 | 3 | 63 | 437 | 89 | 475 | 6.21e-165 | 473 |
| Msa0378240 | MtrunA17_Chr2g0309791 | 60.615 | 358 | 132 | 2 | 80 | 437 | 67 | 415 | 1.02e-157 | 452 |
| Msa0378240 | MtrunA17_Chr2g0309781 | 60.446 | 359 | 127 | 3 | 80 | 438 | 59 | 402 | 6.17e-156 | 447 |
| Msa0378240 | MtrunA17_Chr8g0356381 | 59.733 | 375 | 137 | 4 | 67 | 438 | 43 | 406 | 3.58e-152 | 437 |
| Msa0378240 | MtrunA17_Chr2g0309821 | 60.725 | 331 | 118 | 2 | 80 | 410 | 53 | 371 | 4.07e-140 | 405 |
| Msa0378240 | MtrunA17_Chr6g0488261 | 65.836 | 281 | 92 | 2 | 83 | 363 | 4 | 280 | 1.28e-132 | 384 |
| Msa0378240 | MtrunA17_Chr6g0488251 | 58.095 | 315 | 117 | 3 | 124 | 438 | 7 | 306 | 1.14e-129 | 376 |
| Msa0378240 | MtrunA17_Chr7g0250181 | 60.227 | 176 | 48 | 3 | 137 | 293 | 8 | 180 | 4.11e-69 | 217 |
| Msa0378240 | MtrunA17_Chr7g0250151 | 60.504 | 119 | 47 | 0 | 122 | 240 | 4 | 122 | 5.83e-45 | 152 |
| Msa0378240 | MtrunA17_Chr8g0385701 | 32.121 | 330 | 166 | 16 | 39 | 342 | 279 | 576 | 2.79e-22 | 99.4 |
| Msa0378240 | MtrunA17_Chr1g0170101 | 30.375 | 293 | 151 | 12 | 87 | 357 | 283 | 544 | 2.22e-20 | 93.6 |
| Msa0378240 | MtrunA17_Chr7g0273481 | 30.627 | 271 | 135 | 11 | 87 | 335 | 323 | 562 | 5.92e-19 | 89.4 |
| Msa0378240 | MtrunA17_Chr7g0273401 | 33.880 | 183 | 91 | 6 | 110 | 279 | 1 | 166 | 3.73e-18 | 82.0 |
| Msa0378240 | MtrunA17_Chr7g0250161 | 52.941 | 68 | 30 | 1 | 240 | 305 | 17 | 84 | 1.93e-15 | 73.2 |
| Msa0378240 | MtrunA17_Chr8g0356391 | 63.636 | 44 | 16 | 0 | 394 | 437 | 511 | 554 | 6.15e-15 | 77.0 |
| Msa0378240 | MtrunA17_Chr8g0356421 | 40.698 | 86 | 48 | 1 | 352 | 437 | 427 | 509 | 1.81e-14 | 75.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0378240 | AT5G63970.2 | 70.811 | 370 | 102 | 3 | 72 | 438 | 1 | 367 | 0.0 | 552 |
| Msa0378240 | AT5G63970.1 | 70.811 | 370 | 102 | 3 | 72 | 438 | 1 | 367 | 0.0 | 552 |
| Msa0378240 | AT3G01650.2 | 61.376 | 378 | 134 | 3 | 68 | 437 | 116 | 489 | 3.11e-168 | 482 |
| Msa0378240 | AT3G01650.1 | 61.376 | 378 | 134 | 3 | 68 | 437 | 116 | 489 | 3.11e-168 | 482 |
| Msa0378240 | AT5G14420.3 | 58.961 | 385 | 135 | 2 | 73 | 437 | 87 | 468 | 4.70e-164 | 470 |
| Msa0378240 | AT5G14420.2 | 58.961 | 385 | 135 | 2 | 73 | 437 | 87 | 468 | 4.70e-164 | 470 |
| Msa0378240 | AT5G14420.4 | 58.961 | 385 | 135 | 2 | 73 | 437 | 87 | 468 | 4.70e-164 | 470 |
| Msa0378240 | AT5G14420.1 | 58.961 | 385 | 135 | 2 | 73 | 437 | 87 | 468 | 4.70e-164 | 470 |
| Msa0378240 | AT1G67800.4 | 55.665 | 406 | 161 | 4 | 46 | 437 | 33 | 433 | 1.82e-156 | 450 |
| Msa0378240 | AT1G67800.1 | 55.665 | 406 | 161 | 4 | 46 | 437 | 33 | 433 | 1.82e-156 | 450 |
| Msa0378240 | AT1G67800.3 | 55.665 | 406 | 161 | 4 | 46 | 437 | 33 | 433 | 1.82e-156 | 450 |
| Msa0378240 | AT1G67800.6 | 55.665 | 406 | 161 | 4 | 46 | 437 | 33 | 433 | 1.82e-156 | 450 |
| Msa0378240 | AT1G67800.2 | 55.665 | 406 | 161 | 4 | 46 | 437 | 53 | 453 | 3.30e-156 | 450 |
| Msa0378240 | AT1G79380.1 | 57.474 | 388 | 152 | 3 | 54 | 438 | 24 | 401 | 7.13e-156 | 447 |
| Msa0378240 | AT1G67800.5 | 61.321 | 318 | 115 | 2 | 46 | 360 | 53 | 365 | 3.41e-135 | 395 |
| Msa0378240 | AT1G24545.1 | 45.872 | 109 | 21 | 1 | 123 | 231 | 46 | 116 | 1.67e-23 | 97.4 |
| Msa0378240 | AT5G61910.4 | 30.545 | 275 | 131 | 13 | 108 | 359 | 1109 | 1346 | 8.51e-20 | 93.2 |
| Msa0378240 | AT5G61900.3 | 30.909 | 275 | 130 | 13 | 108 | 359 | 341 | 578 | 2.61e-19 | 90.9 |
| Msa0378240 | AT5G61900.1 | 30.909 | 275 | 130 | 13 | 108 | 359 | 341 | 578 | 2.61e-19 | 90.9 |
| Msa0378240 | AT5G07300.1 | 32.932 | 249 | 121 | 12 | 108 | 335 | 344 | 567 | 6.36e-19 | 89.7 |
| Msa0378240 | AT1G08860.1 | 30.400 | 250 | 126 | 10 | 108 | 335 | 344 | 567 | 3.88e-18 | 87.4 |
Find 118 sgRNAs with CRISPR-Local
Find 274 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGCAAATTCTGTTTCCTTCT+TGG | 0.060815 | 3_1:-78989722 | None:intergenic |
| TTATCCTCTCTCAATTATTT+TGG | 0.184417 | 3_1:+78989108 | Msa0378240:CDS |
| GCGCGTATTTGACAACTTTC+AGG | 0.205094 | 3_1:+78989189 | Msa0378240:CDS |
| AGCAACTTCAGAGAAAATTT+AGG | 0.214808 | 3_1:-78990825 | None:intergenic |
| CATCAACCTTCTTCTTATAC+TGG | 0.227724 | 3_1:+78987117 | Msa0378240:CDS |
| AATCCGAAGGACATGGCTTT+TGG | 0.260692 | 3_1:+78990144 | Msa0378240:CDS |
| TTCTTCTTATACTGGGAGTT+TGG | 0.282403 | 3_1:+78987125 | Msa0378240:CDS |
| GCAACTTCAGAGAAAATTTA+GGG | 0.284919 | 3_1:-78990824 | None:intergenic |
| GATAATCTGATACCATGTTT+TGG | 0.290225 | 3_1:+78987889 | Msa0378240:CDS |
| ATGGAGATTGCTTGCTCATA+TGG | 0.297924 | 3_1:-78987835 | None:intergenic |
| CACTTTGACGATAACATTAC+TGG | 0.306302 | 3_1:+78989166 | Msa0378240:CDS |
| ACCTGTCCACTCATTGCTTT+TGG | 0.308835 | 3_1:-78987674 | None:intergenic |
| AGACAGAGTCCGGCCAATTA+TGG | 0.312266 | 3_1:-78987854 | None:intergenic |
| ATTTGCGCTTGCTGCCCTTA+TGG | 0.316033 | 3_1:+78989738 | Msa0378240:CDS |
| TGCTTTGAGAGAAGCTGGTT+TGG | 0.319024 | 3_1:+78987618 | Msa0378240:CDS |
| ACTGAACTCCCATCATAATT+AGG | 0.320439 | 3_1:-78987081 | None:intergenic |
| GAGCAAGCAATCTCCATAAT+TGG | 0.320653 | 3_1:+78987841 | Msa0378240:CDS |
| TCAATTGCTGCATCAATTAC+AGG | 0.330436 | 3_1:-78988755 | None:intergenic |
| TCTTCTTATACCGGAAGTTC+GGG | 0.334270 | 3_1:+78987171 | Msa0378240:CDS |
| CTCTTCTTATACCGGAAGTT+CGG | 0.338394 | 3_1:+78987170 | Msa0378240:CDS |
| AAGCAGGCTTAGTAGCAATA+TGG | 0.340330 | 3_1:+78987005 | Msa0378240:intron |
| AGCCGACAATTTCAGCTCAT+TGG | 0.359139 | 3_1:+78987278 | Msa0378240:CDS |
| GTTAGTATTCCCCGAACTTC+CGG | 0.363457 | 3_1:-78987181 | None:intergenic |
| CGGAAGAGCCTTCATCATAT+TGG | 0.365540 | 3_1:+78987799 | Msa0378240:CDS |
| CCTTGTTGATTTGATTTGCT+TGG | 0.366947 | 3_1:-78986245 | None:intergenic |
| TTAGTTGAATTGTAAAGAAA+TGG | 0.367130 | 3_1:-78990729 | None:intergenic |
| CTTCGGATTTGTTAGACAAA+TGG | 0.368918 | 3_1:-78990130 | None:intergenic |
| TTCGGATTTGTTAGACAAAT+GGG | 0.372915 | 3_1:-78990129 | None:intergenic |
| GAATCTTCAAATTTGATACT+TGG | 0.376948 | 3_1:+78987640 | Msa0378240:CDS |
| TCGTGATCTATTATTTCCTT+AGG | 0.377030 | 3_1:-78989929 | None:intergenic |
| ATTGCTTGCTCATATGGATT+AGG | 0.378072 | 3_1:-78987829 | None:intergenic |
| AATGTACCTTGCAGCAATTA+TGG | 0.383001 | 3_1:-78989007 | None:intergenic |
| ACGACTATTTATACATCAAT+GGG | 0.389954 | 3_1:-78990696 | None:intergenic |
| GTTCATTGAGTAAAGTATAT+AGG | 0.393095 | 3_1:+78990783 | Msa0378240:three_prime_UTR |
| CCATGACAAACTCTATTATC+AGG | 0.398725 | 3_1:-78988040 | None:intergenic |
| TACGACTATTTATACATCAA+TGG | 0.406535 | 3_1:-78990697 | None:intergenic |
| GTTTCTGCTTTGAGAGAAGC+TGG | 0.409122 | 3_1:+78987613 | Msa0378240:CDS |
| TGATTCAGAGACAGAGACTT+TGG | 0.418989 | 3_1:-78986100 | None:intergenic |
| CAATTTCAGCTCATTGGATC+AGG | 0.420851 | 3_1:+78987284 | Msa0378240:CDS |
| GTAATGGTTGCTTGTTCTTG+TGG | 0.423780 | 3_1:-78988982 | None:intergenic |
| TCTATTATTTCCTTAGGTGG+TGG | 0.431746 | 3_1:-78989923 | None:intergenic |
| ATTCCACATTTGAAACTGTC+AGG | 0.434663 | 3_1:+78988097 | Msa0378240:CDS |
| AGCTTTCCATGCGGCGTACC+AGG | 0.440711 | 3_1:-78988955 | None:intergenic |
| TGTCATTATTGCTGATGGAC+AGG | 0.443974 | 3_1:+78988814 | Msa0378240:CDS |
| TCTGCACTGGCTGGAGCTGT+TGG | 0.447629 | 3_1:-78990001 | None:intergenic |
| AGCAGGCTTAGTAGCAATAT+GGG | 0.454705 | 3_1:+78987006 | Msa0378240:intron |
| CGCCAGGTTACTAGAAATCC+TGG | 0.458101 | 3_1:+78988937 | Msa0378240:intron |
| CTATTATTTCCTTAGGTGGT+GGG | 0.465035 | 3_1:-78989922 | None:intergenic |
| TGTGCTGCCCGGTACTGAAA+TGG | 0.465356 | 3_1:-78989766 | None:intergenic |
| GTTCTTGTCATTATTGCTGA+TGG | 0.466502 | 3_1:+78988809 | Msa0378240:CDS |
| CAACACCCTCCTAATTATGA+TGG | 0.471709 | 3_1:+78987072 | Msa0378240:CDS |
| TATCTTTATGCCCTATGTGC+AGG | 0.472490 | 3_1:+78990596 | Msa0378240:CDS |
| TAATTTGCTGCCTGCACATA+GGG | 0.474321 | 3_1:-78990606 | None:intergenic |
| TGGAGATTCCATTTCAGTAC+CGG | 0.474482 | 3_1:+78989758 | Msa0378240:CDS |
| CATCCAAAAGCCATGTCCTT+CGG | 0.479435 | 3_1:-78990147 | None:intergenic |
| ATCTTCACATGCTACAAGTT+CGG | 0.483413 | 3_1:+78987215 | Msa0378240:CDS |
| ATAAGAAGAGGGTTGATCAT+AGG | 0.486114 | 3_1:-78987157 | None:intergenic |
| ATCCAATGAGCTGAAATTGT+CGG | 0.486210 | 3_1:-78987280 | None:intergenic |
| ATTTCCTTAGGTGGTGGGAG+AGG | 0.495075 | 3_1:-78989917 | None:intergenic |
| CATCAAAAGTAGACAGAGTC+CGG | 0.497235 | 3_1:-78987864 | None:intergenic |
| TGATCTATTATTTCCTTAGG+TGG | 0.501463 | 3_1:-78989926 | None:intergenic |
| TGCAGCAATTATGGAAGTAA+TGG | 0.506063 | 3_1:-78988998 | None:intergenic |
| CATACTGGTTCTGCACTGGC+TGG | 0.522210 | 3_1:-78990010 | None:intergenic |
| GATCAACCCTCTTCTTATAC+CGG | 0.529411 | 3_1:+78987162 | Msa0378240:CDS |
| ATCAACCTTCTTCTTATACT+GGG | 0.532895 | 3_1:+78987118 | Msa0378240:CDS |
| AAGACCTCTCCCACCACCTA+AGG | 0.533866 | 3_1:+78989913 | Msa0378240:CDS |
| CAATTGCTGCATCAATTACA+GGG | 0.538242 | 3_1:-78988754 | None:intergenic |
| ACCAAAAGCAATGAGTGGAC+AGG | 0.538547 | 3_1:+78987673 | Msa0378240:CDS |
| CTGAAATGGAATCTCCATAA+GGG | 0.542289 | 3_1:-78989752 | None:intergenic |
| AGAAATCCTGGTACGCCGCA+TGG | 0.545259 | 3_1:+78988949 | Msa0378240:CDS |
| ATTACAGGGGCAAATGAAGT+TGG | 0.548560 | 3_1:-78988740 | None:intergenic |
| ACTGAAATGGAATCTCCATA+AGG | 0.550689 | 3_1:-78989753 | None:intergenic |
| AAACTCCCAGTATAAGAAGA+AGG | 0.556963 | 3_1:-78987123 | None:intergenic |
| GTAATTTGCTGCCTGCACAT+AGG | 0.558684 | 3_1:-78990607 | None:intergenic |
| CATCATAATTAGGAGGGTGT+TGG | 0.562931 | 3_1:-78987071 | None:intergenic |
| TAGGTAAGTATTCGTTCCAT+CGG | 0.563326 | 3_1:+78987779 | Msa0378240:intron |
| TAGCATGTGAAGATGATTGA+TGG | 0.566183 | 3_1:-78987206 | None:intergenic |
| GAACTCCCATCATAATTAGG+AGG | 0.569731 | 3_1:-78987078 | None:intergenic |
| CCTGATAATAGAGTTTGTCA+TGG | 0.570822 | 3_1:+78988040 | Msa0378240:CDS |
| GAGCCCTTCCAATATGATGA+AGG | 0.570882 | 3_1:-78987807 | None:intergenic |
| GGAGATTCCATTTCAGTACC+GGG | 0.571735 | 3_1:+78989759 | Msa0378240:CDS |
| AGAGCCTTCATCATATTGGA+AGG | 0.572099 | 3_1:+78987803 | Msa0378240:CDS |
| AAGTGCTTCATCTCGTCCCA+TGG | 0.572627 | 3_1:-78989148 | None:intergenic |
| AAATTGTCGGCTATATATGC+TGG | 0.574282 | 3_1:-78987267 | None:intergenic |
| AAGCAATCTCCATAATTGGC+CGG | 0.575523 | 3_1:+78987845 | Msa0378240:CDS |
| GAAACATACTGGTTCTGCAC+TGG | 0.575744 | 3_1:-78990014 | None:intergenic |
| TCTAACAAATCCGAAGGACA+TGG | 0.577510 | 3_1:+78990137 | Msa0378240:CDS |
| TATGATGAAGGCTCTTCCGA+TGG | 0.578630 | 3_1:-78987795 | None:intergenic |
| GAATCGAAATTTGTTATGCG+TGG | 0.586429 | 3_1:-78989971 | None:intergenic |
| CGAACTTCCGGTATAAGAAG+AGG | 0.587264 | 3_1:-78987169 | None:intergenic |
| TTGGAGTTGGAGATGGACCA+TGG | 0.589444 | 3_1:+78989131 | Msa0378240:CDS |
| ATTTCACCAAAAGCAATGAG+TGG | 0.597202 | 3_1:+78987668 | Msa0378240:CDS |
| AACACCCTCCTAATTATGAT+GGG | 0.599452 | 3_1:+78987073 | Msa0378240:CDS |
| GAACTTCCGGTATAAGAAGA+GGG | 0.604425 | 3_1:-78987168 | None:intergenic |
| AACTCCCATCATAATTAGGA+GGG | 0.620871 | 3_1:-78987077 | None:intergenic |
| ACTTTGACGATAACATTACT+GGG | 0.621667 | 3_1:+78989167 | Msa0378240:CDS |
| TGATGCAGCAATTGACATTG+TGG | 0.622992 | 3_1:+78988763 | Msa0378240:CDS |
| TCGGATTTGTTAGACAAATG+GGG | 0.624504 | 3_1:-78990128 | None:intergenic |
| GACATTGTGGAACGAAACAA+CGG | 0.625993 | 3_1:+78988776 | Msa0378240:CDS |
| CCATCACCAAACCCAAAACA+TGG | 0.626028 | 3_1:-78987901 | None:intergenic |
| AAACCTGACAGTTTCAAATG+TGG | 0.629100 | 3_1:-78988100 | None:intergenic |
| AAAGATCATGTCTGAGAACA+CGG | 0.629668 | 3_1:+78989693 | Msa0378240:CDS |
| TGGAGTTGGAGATGGACCAT+GGG | 0.631244 | 3_1:+78989132 | Msa0378240:CDS |
| CTGGTTGCTTGTTATGACGA+TGG | 0.637709 | 3_1:-78987248 | None:intergenic |
| TTACTTCCATAATTGCTGCA+AGG | 0.643987 | 3_1:+78989001 | Msa0378240:CDS |
| CCAACCAAAATAATTGAGAG+AGG | 0.646003 | 3_1:-78989112 | None:intergenic |
| CCAAGCAAATCAAATCAACA+AGG | 0.646842 | 3_1:+78986245 | Msa0378240:five_prime_UTR |
| GAGCCTTCATCATATTGGAA+GGG | 0.649815 | 3_1:+78987804 | Msa0378240:CDS |
| ATGTAGACTTGCAAGGAGTG+TGG | 0.650354 | 3_1:+78990565 | Msa0378240:intron |
| GACTATTTATACATCAATGG+GGG | 0.651903 | 3_1:-78990694 | None:intergenic |
| GAACACGGAAGCATCCAAGA+AGG | 0.652615 | 3_1:+78989708 | Msa0378240:CDS |
| CATTTGTCTAACAAATCCGA+AGG | 0.659505 | 3_1:+78990131 | Msa0378240:CDS |
| CAACTTCAGAGAAAATTTAG+GGG | 0.660131 | 3_1:-78990823 | None:intergenic |
| CGACTATTTATACATCAATG+GGG | 0.674760 | 3_1:-78990695 | None:intergenic |
| CTTCTTATACCGGAAGTTCG+GGG | 0.677113 | 3_1:+78987172 | Msa0378240:CDS |
| CATGTGAAGATGATTGATGG+TGG | 0.687554 | 3_1:-78987203 | None:intergenic |
| TGTGGACTAAGCTTTCCATG+CGG | 0.719964 | 3_1:-78988964 | None:intergenic |
| AATTGCTGCATCAATTACAG+GGG | 0.724712 | 3_1:-78988753 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTTTGAAATAATTCTAT+TGG | + | chr3_1:78986292-78986311 | Msa0378240:intron | 10.0% |
| !! | TAATCCTAATAATAAATATT+AGG | + | chr3_1:78988402-78988421 | Msa0378240:intron | 10.0% |
| !! | AAATCCTAATATTTATTATT+AGG | - | chr3_1:78988409-78988428 | None:intergenic | 10.0% |
| !!! | TTAAAATTTCATTCTTTTTA+CGG | - | chr3_1:78990314-78990333 | None:intergenic | 10.0% |
| !!! | TTGTTTTGTTCTTTTTTTTT+AGG | - | chr3_1:78986174-78986193 | None:intergenic | 15.0% |
| !! | TAAAAAAAAAGAACAAAACA+AGG | + | chr3_1:78986173-78986192 | Msa0378240:intron | 15.0% |
| !! | TATTTCAAAAAATAAATAGC+TGG | - | chr3_1:78986285-78986304 | None:intergenic | 15.0% |
| !!! | TACAATAAGTTCATTTTAAA+AGG | - | chr3_1:78987704-78987723 | None:intergenic | 15.0% |
| !!! | CTTTTTTATTTCTTTCAAAT+AGG | + | chr3_1:78988162-78988181 | Msa0378240:intron | 15.0% |
| !! | GCATTATAATTTATTGTATA+CGG | + | chr3_1:78988214-78988233 | Msa0378240:intron | 15.0% |
| !!! | AAGATTAATTTTCTAAGATA+CGG | - | chr3_1:78989584-78989603 | None:intergenic | 15.0% |
| !! | AAACTACAGAAATTATAAAA+TGG | - | chr3_1:78989662-78989681 | None:intergenic | 15.0% |
| !!! | TAATTCTATTGGTATGATTT+TGG | + | chr3_1:78986303-78986322 | Msa0378240:intron | 20.0% |
| !!! | AAATATTGTTTTAGTACTTC+TGG | - | chr3_1:78986751-78986770 | None:intergenic | 20.0% |
| !! | GTATACTTTATCAATGTAAA+TGG | + | chr3_1:78986842-78986861 | Msa0378240:intron | 20.0% |
| !! | ACTTATTGTATATGCATATA+TGG | + | chr3_1:78987714-78987733 | Msa0378240:intron | 20.0% |
| !! | AAATATTAGGATTTGATTCT+TGG | + | chr3_1:78988415-78988434 | Msa0378240:intron | 20.0% |
| !!! | TTCTAGAAAAAACAATAGAA+AGG | - | chr3_1:78988904-78988923 | None:intergenic | 20.0% |
| !!! | TTTTTTTTTGCTGTTGTTTA+TGG | + | chr3_1:78989046-78989065 | Msa0378240:intron | 20.0% |
| !!! | GTTGTGGATTAATAATATAA+TGG | + | chr3_1:78989811-78989830 | Msa0378240:intron | 20.0% |
| !! | TTAACATATTCTTGTATTGA+AGG | + | chr3_1:78990101-78990120 | Msa0378240:intron | 20.0% |
| !!! | TAAATAGCTTTTCCAAAAAA+TGG | - | chr3_1:78990272-78990291 | None:intergenic | 20.0% |
| !! | TTAGTTGAATTGTAAAGAAA+TGG | - | chr3_1:78990732-78990751 | None:intergenic | 20.0% |
| !! | AAAGTATATAGGAAAAATGA+AGG | + | chr3_1:78990794-78990813 | Msa0378240:three_prime_UTR | 20.0% |
| ! | TATGAATTATGCACACAATT+TGG | + | chr3_1:78986386-78986405 | Msa0378240:intron | 25.0% |
| !!! | AGAACAAACTTGTTTCTAAT+AGG | + | chr3_1:78986428-78986447 | Msa0378240:intron | 25.0% |
| ! | AATAATTGTCACATAGAAGA+TGG | + | chr3_1:78986701-78986720 | Msa0378240:intron | 25.0% |
| !!! | TGGAAGTGTATTTTCAAAAT+AGG | - | chr3_1:78986806-78986825 | None:intergenic | 25.0% |
| ! | ATGTGAAGGCTAATTAATAT+TGG | - | chr3_1:78987367-78987386 | None:intergenic | 25.0% |
| ! | GAATCTTCAAATTTGATACT+TGG | + | chr3_1:78987640-78987659 | Msa0378240:CDS | 25.0% |
| !! | ATAATCTGATACCATGTTTT+GGG | + | chr3_1:78987890-78987909 | Msa0378240:CDS | 25.0% |
| ! | AACAAAAAGGTTAACTTAGA+AGG | - | chr3_1:78988532-78988551 | None:intergenic | 25.0% |
| !! | TCTAAGTTAACCTTTTTGTT+TGG | + | chr3_1:78988532-78988551 | Msa0378240:intron | 25.0% |
| !! | TATGGTATTTGTCTTTTATG+TGG | + | chr3_1:78989064-78989083 | Msa0378240:intron | 25.0% |
| !! | TTATCCTCTCTCAATTATTT+TGG | + | chr3_1:78989108-78989127 | Msa0378240:CDS | 25.0% |
| ! | ATTTGTCGTATAAATGACAA+AGG | + | chr3_1:78989291-78989310 | Msa0378240:intron | 25.0% |
| ! | TTATTAATCCACAACTTACT+TGG | - | chr3_1:78989806-78989825 | None:intergenic | 25.0% |
| !!! | CTTTTATGTTGATAATGAAC+TGG | - | chr3_1:78989896-78989915 | None:intergenic | 25.0% |
| !! | AAATTTCATTCTTTTTACGG+TGG | - | chr3_1:78990311-78990330 | None:intergenic | 25.0% |
| ! | TGAAAATAGAATGGTTCTTT+CGG | - | chr3_1:78990430-78990449 | None:intergenic | 25.0% |
| ! | TGCACATTAATGTTTATGTT+TGG | + | chr3_1:78990484-78990503 | Msa0378240:intron | 25.0% |
| !!! | TTTTTTTATGTAGACTTGCA+AGG | + | chr3_1:78990558-78990577 | Msa0378240:intron | 25.0% |
| ! | ACGACTATTTATACATCAAT+GGG | - | chr3_1:78990699-78990718 | None:intergenic | 25.0% |
| ! | TACGACTATTTATACATCAA+TGG | - | chr3_1:78990700-78990719 | None:intergenic | 25.0% |
| ! | GTTCATTGAGTAAAGTATAT+AGG | + | chr3_1:78990783-78990802 | Msa0378240:three_prime_UTR | 25.0% |
| !!! | CTTGGTTTTATGATTGATTG+AGG | - | chr3_1:78986230-78986249 | None:intergenic | 30.0% |
| ! | CTAATAGGTTTGTTTGACTT+TGG | + | chr3_1:78986443-78986462 | Msa0378240:intron | 30.0% |
| CTGTAAATGACACCAAAATA+TGG | + | chr3_1:78986510-78986529 | Msa0378240:intron | 30.0% | |
| AAATGACACCAAAATATGGT+TGG | + | chr3_1:78986514-78986533 | Msa0378240:intron | 30.0% | |
| ! | AGCATATACCAACCATATTT+TGG | - | chr3_1:78986525-78986544 | None:intergenic | 30.0% |
| !!! | CTTCTTTTTTTACCATCAGT+TGG | + | chr3_1:78986561-78986580 | Msa0378240:intron | 30.0% |
| ATACTTCAGAAAAGACACTA+TGG | - | chr3_1:78986826-78986845 | None:intergenic | 30.0% | |
| ACAAGAAACACTAGAATAAC+CGG | + | chr3_1:78986867-78986886 | Msa0378240:intron | 30.0% | |
| CTTTCAGTAATATGAAGCAA+CGG | - | chr3_1:78986988-78987007 | None:intergenic | 30.0% | |
| ATCAACCTTCTTCTTATACT+GGG | + | chr3_1:78987118-78987137 | Msa0378240:CDS | 30.0% | |
| ATAGAGCATATTAGCAGTAA+AGG | + | chr3_1:78987336-78987355 | Msa0378240:intron | 30.0% | |
| TAGAGCATATTAGCAGTAAA+GGG | + | chr3_1:78987337-78987356 | Msa0378240:intron | 30.0% | |
| ATAGAGCATATTAGCAGTAA+AGG | + | chr3_1:78987336-78987355 | Msa0378240:intron | 30.0% | |
| TAGAGCATATTAGCAGTAAA+GGG | + | chr3_1:78987337-78987356 | Msa0378240:intron | 30.0% | |
| TAGTTAAGTCTAACATGTGA+AGG | - | chr3_1:78987546-78987565 | None:intergenic | 30.0% | |
| AGAAGATTTATGACACTTTC+AGG | + | chr3_1:78987588-78987607 | Msa0378240:intron | 30.0% | |
| AGTCACACTGTGATAATTAT+AGG | + | chr3_1:78987760-78987779 | Msa0378240:intron | 30.0% | |
| ! | GATAATCTGATACCATGTTT+TGG | + | chr3_1:78987889-78987908 | Msa0378240:CDS | 30.0% |
| GCTATGTTGAATTTGTGATT+AGG | + | chr3_1:78988296-78988315 | Msa0378240:intron | 30.0% | |
| CTTGTTGACAACTTATTGTT+TGG | + | chr3_1:78988492-78988511 | Msa0378240:intron | 30.0% | |
| !! | TAACCTTTTTGTTTGGATGT+TGG | + | chr3_1:78988539-78988558 | Msa0378240:intron | 30.0% |
| TTTGGATGTTGGTACATAAT+AGG | + | chr3_1:78988550-78988569 | Msa0378240:intron | 30.0% | |
| AAATATCAAGAGAAAGTCTG+TGG | - | chr3_1:78988585-78988604 | None:intergenic | 30.0% | |
| TTACCTCACAATTCAAGATA+TGG | - | chr3_1:78988640-78988659 | None:intergenic | 30.0% | |
| AATTGTGAGGTAACTTGAAT+TGG | + | chr3_1:78988647-78988666 | Msa0378240:intron | 30.0% | |
| !! | AACTCCCTCATTTTTGTTAT+AGG | + | chr3_1:78988716-78988735 | Msa0378240:intron | 30.0% |
| !! | ACTCCCTCATTTTTGTTATA+GGG | + | chr3_1:78988717-78988736 | Msa0378240:intron | 30.0% |
| ! | AAGAAAGCACATCATGAAAT+GGG | - | chr3_1:78988867-78988886 | None:intergenic | 30.0% |
| ! | AAAGAAAGCACATCATGAAA+TGG | - | chr3_1:78988868-78988887 | None:intergenic | 30.0% |
| AGAAAAAACAATAGAAAGGC+AGG | - | chr3_1:78988900-78988919 | None:intergenic | 30.0% | |
| !!! | TCAATTATTTTGGTTGGAGT+TGG | + | chr3_1:78989118-78989137 | Msa0378240:CDS | 30.0% |
| ACTTTGACGATAACATTACT+GGG | + | chr3_1:78989167-78989186 | Msa0378240:CDS | 30.0% | |
| CCTTTAATATCTCTCTACAA+AGG | - | chr3_1:78989265-78989284 | None:intergenic | 30.0% | |
| CCTTTGTAGAGAGATATTAA+AGG | + | chr3_1:78989262-78989281 | Msa0378240:intron | 30.0% | |
| TAGAGAGATATTAAAGGATC+AGG | + | chr3_1:78989268-78989287 | Msa0378240:intron | 30.0% | |
| AATGTAAGATGCCTTACAAA+TGG | + | chr3_1:78989402-78989421 | Msa0378240:intron | 30.0% | |
| ATGTAAGATGCCTTACAAAT+GGG | + | chr3_1:78989403-78989422 | Msa0378240:intron | 30.0% | |
| ATTAGGTAAACCCATTTGTA+AGG | - | chr3_1:78989416-78989435 | None:intergenic | 30.0% | |
| TTACCTAATGTCTGATACTA+TGG | + | chr3_1:78989427-78989446 | Msa0378240:intron | 30.0% | |
| TAACCATAGTATCAGACATT+AGG | - | chr3_1:78989433-78989452 | None:intergenic | 30.0% | |
| CTGATACTATGGTTAGATTA+TGG | + | chr3_1:78989438-78989457 | Msa0378240:intron | 30.0% | |
| ATACTATGGTTAGATTATGG+AGG | + | chr3_1:78989441-78989460 | Msa0378240:intron | 30.0% | |
| ATGATTATCACAAAACAGCA+TGG | - | chr3_1:78989531-78989550 | None:intergenic | 30.0% | |
| GTTCTGTATTACTAGATTCA+AGG | + | chr3_1:78989833-78989852 | Msa0378240:intron | 30.0% | |
| TGATCTATTATTTCCTTAGG+TGG | - | chr3_1:78989929-78989948 | None:intergenic | 30.0% | |
| TCGTGATCTATTATTTCCTT+AGG | - | chr3_1:78989932-78989951 | None:intergenic | 30.0% | |
| !! | TTCGGATTTGTTAGACAAAT+GGG | - | chr3_1:78990132-78990151 | None:intergenic | 30.0% |
| TGTGCAAATAGTAAAACTTG+AGG | + | chr3_1:78990202-78990221 | Msa0378240:intron | 30.0% | |
| !!! | TTTCACTAAGCACCATTTTT+TGG | + | chr3_1:78990257-78990276 | Msa0378240:intron | 30.0% |
| ! | GTGAACATTTTGAATGTCAT+TGG | + | chr3_1:78990378-78990397 | Msa0378240:intron | 30.0% |
| GACTATTTATACATCAATGG+GGG | - | chr3_1:78990697-78990716 | None:intergenic | 30.0% | |
| CGACTATTTATACATCAATG+GGG | - | chr3_1:78990698-78990717 | None:intergenic | 30.0% | |
| CAACTTCAGAGAAAATTTAG+GGG | - | chr3_1:78990826-78990845 | None:intergenic | 30.0% | |
| GCAACTTCAGAGAAAATTTA+GGG | - | chr3_1:78990827-78990846 | None:intergenic | 30.0% | |
| AGCAACTTCAGAGAAAATTT+AGG | - | chr3_1:78990828-78990847 | None:intergenic | 30.0% | |
| !! | CCTTGTTGATTTGATTTGCT+TGG | - | chr3_1:78986248-78986267 | None:intergenic | 35.0% |
| CCAAGCAAATCAAATCAACA+AGG | + | chr3_1:78986245-78986264 | Msa0378240:five_prime_UTR | 35.0% | |
| ACTTATTGATGAACTGCTTC+TGG | + | chr3_1:78986345-78986364 | Msa0378240:intron | 35.0% | |
| GTTTGTTCTAATGATTACCG+AGG | - | chr3_1:78986417-78986436 | None:intergenic | 35.0% | |
| ATCAAAGCTAATCCAACTGA+TGG | - | chr3_1:78986576-78986595 | None:intergenic | 35.0% | |
| TTACTTTGTATGTGAGTTGC+TGG | + | chr3_1:78986644-78986663 | Msa0378240:intron | 35.0% | |
| TGCTTCATATTACTGAAAGC+AGG | + | chr3_1:78986989-78987008 | Msa0378240:intron | 35.0% | |
| AACACCCTCCTAATTATGAT+GGG | + | chr3_1:78987073-78987092 | Msa0378240:CDS | 35.0% | |
| AACTCCCATCATAATTAGGA+GGG | - | chr3_1:78987080-78987099 | None:intergenic | 35.0% | |
| ACTGAACTCCCATCATAATT+AGG | - | chr3_1:78987084-78987103 | None:intergenic | 35.0% | |
| CATCAACCTTCTTCTTATAC+TGG | + | chr3_1:78987117-78987136 | Msa0378240:CDS | 35.0% | |
| AAACTCCCAGTATAAGAAGA+AGG | - | chr3_1:78987126-78987145 | None:intergenic | 35.0% | |
| TTCTTCTTATACTGGGAGTT+TGG | + | chr3_1:78987125-78987144 | Msa0378240:CDS | 35.0% | |
| ! | ATAAGAAGAGGGTTGATCAT+AGG | - | chr3_1:78987160-78987179 | None:intergenic | 35.0% |
| TAGCATGTGAAGATGATTGA+TGG | - | chr3_1:78987209-78987228 | None:intergenic | 35.0% | |
| ATCTTCACATGCTACAAGTT+CGG | + | chr3_1:78987215-78987234 | Msa0378240:CDS | 35.0% | |
| ! | AAATTGTCGGCTATATATGC+TGG | - | chr3_1:78987270-78987289 | None:intergenic | 35.0% |
| ATCCAATGAGCTGAAATTGT+CGG | - | chr3_1:78987283-78987302 | None:intergenic | 35.0% | |
| AGAGCATATTAGCAGTAAAG+GGG | + | chr3_1:78987338-78987357 | Msa0378240:intron | 35.0% | |
| TAGTCAAGTCTAACATGTGA+AGG | - | chr3_1:78987381-78987400 | None:intergenic | 35.0% | |
| AGAGCATATTAGCAGTAAAG+GGG | + | chr3_1:78987338-78987357 | Msa0378240:intron | 35.0% | |
| ATTTCACCAAAAGCAATGAG+TGG | + | chr3_1:78987668-78987687 | Msa0378240:CDS | 35.0% | |
| TAGGTAAGTATTCGTTCCAT+CGG | + | chr3_1:78987779-78987798 | Msa0378240:intron | 35.0% | |
| ATTGCTTGCTCATATGGATT+AGG | - | chr3_1:78987832-78987851 | None:intergenic | 35.0% | |
| !! | TAAATTCAGAAGCATCTGCT+TGG | - | chr3_1:78987933-78987952 | None:intergenic | 35.0% |
| CCATGACAAACTCTATTATC+AGG | - | chr3_1:78988043-78988062 | None:intergenic | 35.0% | |
| CCTGATAATAGAGTTTGTCA+TGG | + | chr3_1:78988040-78988059 | Msa0378240:CDS | 35.0% | |
| !! | TAGAGTTTGTCATGGTTTTG+AGG | + | chr3_1:78988048-78988067 | Msa0378240:CDS | 35.0% |
| ! | ATTCCACATTTGAAACTGTC+AGG | + | chr3_1:78988097-78988116 | Msa0378240:CDS | 35.0% |
| AAACCTGACAGTTTCAAATG+TGG | - | chr3_1:78988103-78988122 | None:intergenic | 35.0% | |
| ! | CTGTCTGTCTAGAATAACTA+TGG | - | chr3_1:78988192-78988211 | None:intergenic | 35.0% |
| ! | TTTTACGTAACTTTGAGCCT+AGG | + | chr3_1:78988262-78988281 | Msa0378240:intron | 35.0% |
| TTAACTTAGAAGGAGAGCTT+TGG | - | chr3_1:78988522-78988541 | None:intergenic | 35.0% | |
| GTACCAACATCCAAACAAAA+AGG | - | chr3_1:78988545-78988564 | None:intergenic | 35.0% | |
| GATGTTGGTACATAATAGGA+TGG | + | chr3_1:78988554-78988573 | Msa0378240:intron | 35.0% | |
| TTGCCATATCTTGAATTGTG+AGG | + | chr3_1:78988634-78988653 | Msa0378240:intron | 35.0% | |
| TGGCCCTATAACAAAAATGA+GGG | - | chr3_1:78988723-78988742 | None:intergenic | 35.0% | |
| TTGGCCCTATAACAAAAATG+AGG | - | chr3_1:78988724-78988743 | None:intergenic | 35.0% | |
| AATTGCTGCATCAATTACAG+GGG | - | chr3_1:78988756-78988775 | None:intergenic | 35.0% | |
| CAATTGCTGCATCAATTACA+GGG | - | chr3_1:78988757-78988776 | None:intergenic | 35.0% | |
| TCAATTGCTGCATCAATTAC+AGG | - | chr3_1:78988758-78988777 | None:intergenic | 35.0% | |
| GTTCTTGTCATTATTGCTGA+TGG | + | chr3_1:78988809-78988828 | Msa0378240:CDS | 35.0% | |
| ! | AGAAAGCACATCATGAAATG+GGG | - | chr3_1:78988866-78988885 | None:intergenic | 35.0% |
| TGCAGCAATTATGGAAGTAA+TGG | - | chr3_1:78989001-78989020 | None:intergenic | 35.0% | |
| TTACTTCCATAATTGCTGCA+AGG | + | chr3_1:78989001-78989020 | Msa0378240:CDS | 35.0% | |
| AATGTACCTTGCAGCAATTA+TGG | - | chr3_1:78989010-78989029 | None:intergenic | 35.0% | |
| CCAACCAAAATAATTGAGAG+AGG | - | chr3_1:78989115-78989134 | None:intergenic | 35.0% | |
| !!! | CCTCTCTCAATTATTTTGGT+TGG | + | chr3_1:78989112-78989131 | Msa0378240:CDS | 35.0% |
| CACTTTGACGATAACATTAC+TGG | + | chr3_1:78989166-78989185 | Msa0378240:CDS | 35.0% | |
| TACCATAAACGCAGCAATAT+CGG | - | chr3_1:78989235-78989254 | None:intergenic | 35.0% | |
| ! | GTTTTGTGAAACTGTTCTCA+TGG | + | chr3_1:78989340-78989359 | Msa0378240:intron | 35.0% |
| !!! | TTTTCTAAGATACGGAATGC+TGG | - | chr3_1:78989576-78989595 | None:intergenic | 35.0% |
| AAAGATCATGTCTGAGAACA+CGG | + | chr3_1:78989693-78989712 | Msa0378240:CDS | 35.0% | |
| CTGAAATGGAATCTCCATAA+GGG | - | chr3_1:78989755-78989774 | None:intergenic | 35.0% | |
| ACTGAAATGGAATCTCCATA+AGG | - | chr3_1:78989756-78989775 | None:intergenic | 35.0% | |
| CTATTATTTCCTTAGGTGGT+GGG | - | chr3_1:78989925-78989944 | None:intergenic | 35.0% | |
| TCTATTATTTCCTTAGGTGG+TGG | - | chr3_1:78989926-78989945 | None:intergenic | 35.0% | |
| !! | GAATCGAAATTTGTTATGCG+TGG | - | chr3_1:78989974-78989993 | None:intergenic | 35.0% |
| CATAGCAGTAGAAAGATACA+GGG | - | chr3_1:78990049-78990068 | None:intergenic | 35.0% | |
| TCATAGCAGTAGAAAGATAC+AGG | - | chr3_1:78990050-78990069 | None:intergenic | 35.0% | |
| !! | TCGGATTTGTTAGACAAATG+GGG | - | chr3_1:78990131-78990150 | None:intergenic | 35.0% |
| !! | CTTCGGATTTGTTAGACAAA+TGG | - | chr3_1:78990133-78990152 | None:intergenic | 35.0% |
| CATTTGTCTAACAAATCCGA+AGG | + | chr3_1:78990131-78990150 | Msa0378240:CDS | 35.0% | |
| AAATAGAATGGTTCTTTCGG+TGG | - | chr3_1:78990427-78990446 | None:intergenic | 35.0% | |
| !! | GAATCAGATCCACTTTTACA+TGG | - | chr3_1:78990513-78990532 | None:intergenic | 35.0% |
| TGATTCAGAGACAGAGACTT+TGG | - | chr3_1:78986103-78986122 | None:intergenic | 40.0% | |
| TTTGTATGTGAGTTGCTGGA+AGG | + | chr3_1:78986648-78986667 | Msa0378240:intron | 40.0% | |
| AACAAAAACCAAACCACCAG+AGG | - | chr3_1:78986931-78986950 | None:intergenic | 40.0% | |
| TCAGTAATATGAAGCAACGG+AGG | - | chr3_1:78986985-78987004 | None:intergenic | 40.0% | |
| AAGCAGGCTTAGTAGCAATA+TGG | + | chr3_1:78987005-78987024 | Msa0378240:intron | 40.0% | |
| AGCAGGCTTAGTAGCAATAT+GGG | + | chr3_1:78987006-78987025 | Msa0378240:intron | 40.0% | |
| ! | CATCATAATTAGGAGGGTGT+TGG | - | chr3_1:78987074-78987093 | None:intergenic | 40.0% |
| CAACACCCTCCTAATTATGA+TGG | + | chr3_1:78987072-78987091 | Msa0378240:CDS | 40.0% | |
| GAACTCCCATCATAATTAGG+AGG | - | chr3_1:78987081-78987100 | None:intergenic | 40.0% | |
| GATCAACCCTCTTCTTATAC+CGG | + | chr3_1:78987162-78987181 | Msa0378240:CDS | 40.0% | |
| GAACTTCCGGTATAAGAAGA+GGG | - | chr3_1:78987171-78987190 | None:intergenic | 40.0% | |
| CTCTTCTTATACCGGAAGTT+CGG | + | chr3_1:78987170-78987189 | Msa0378240:CDS | 40.0% | |
| TCTTCTTATACCGGAAGTTC+GGG | + | chr3_1:78987171-78987190 | Msa0378240:CDS | 40.0% | |
| CATGTGAAGATGATTGATGG+TGG | - | chr3_1:78987206-78987225 | None:intergenic | 40.0% | |
| CAATTTCAGCTCATTGGATC+AGG | + | chr3_1:78987284-78987303 | Msa0378240:CDS | 40.0% | |
| AATCGATGCAGCTTGAAAAG+GGG | - | chr3_1:78987488-78987507 | None:intergenic | 40.0% | |
| CAATCGATGCAGCTTGAAAA+GGG | - | chr3_1:78987489-78987508 | None:intergenic | 40.0% | |
| ACAATCGATGCAGCTTGAAA+AGG | - | chr3_1:78987490-78987509 | None:intergenic | 40.0% | |
| AGAGCCTTCATCATATTGGA+AGG | + | chr3_1:78987803-78987822 | Msa0378240:CDS | 40.0% | |
| GAGCCTTCATCATATTGGAA+GGG | + | chr3_1:78987804-78987823 | Msa0378240:CDS | 40.0% | |
| ATGGAGATTGCTTGCTCATA+TGG | - | chr3_1:78987838-78987857 | None:intergenic | 40.0% | |
| GAGCAAGCAATCTCCATAAT+TGG | + | chr3_1:78987841-78987860 | Msa0378240:CDS | 40.0% | |
| AAGCAATCTCCATAATTGGC+CGG | + | chr3_1:78987845-78987864 | Msa0378240:CDS | 40.0% | |
| CATCAAAAGTAGACAGAGTC+CGG | - | chr3_1:78987867-78987886 | None:intergenic | 40.0% | |
| !!! | CTGATACCATGTTTTGGGTT+TGG | + | chr3_1:78987895-78987914 | Msa0378240:CDS | 40.0% |
| TAACTTTGAGCCTAGGATTG+AGG | + | chr3_1:78988269-78988288 | Msa0378240:intron | 40.0% | |
| CTTGGATTCTAACAAGCTAC+TGG | + | chr3_1:78988433-78988452 | Msa0378240:intron | 40.0% | |
| GAGTTAGCATAGCATCAAAC+AGG | - | chr3_1:78988466-78988485 | None:intergenic | 40.0% | |
| ATTACAGGGGCAAATGAAGT+TGG | - | chr3_1:78988743-78988762 | None:intergenic | 40.0% | |
| TGATGCAGCAATTGACATTG+TGG | + | chr3_1:78988763-78988782 | Msa0378240:CDS | 40.0% | |
| GACATTGTGGAACGAAACAA+CGG | + | chr3_1:78988776-78988795 | Msa0378240:CDS | 40.0% | |
| ! | TGTCATTATTGCTGATGGAC+AGG | + | chr3_1:78988814-78988833 | Msa0378240:CDS | 40.0% |
| ! | GAATGTTTTTCTTTTCCGCC+AGG | + | chr3_1:78988921-78988940 | Msa0378240:intron | 40.0% |
| !! | TACCAGGATTTCTAGTAACC+TGG | - | chr3_1:78988942-78988961 | None:intergenic | 40.0% |
| GTAATGGTTGCTTGTTCTTG+TGG | - | chr3_1:78988985-78989004 | None:intergenic | 40.0% | |
| !!! | ATTTTGGTTGGAGTTGGAGA+TGG | + | chr3_1:78989124-78989143 | Msa0378240:CDS | 40.0% |
| ATCCGATATTGCTGCGTTTA+TGG | + | chr3_1:78989230-78989249 | Msa0378240:intron | 40.0% | |
| GTTAGATTATGGAGGACAGT+GGG | + | chr3_1:78989449-78989468 | Msa0378240:intron | 40.0% | |
| CGCAAATTCTGTTTCCTTCT+TGG | - | chr3_1:78989725-78989744 | None:intergenic | 40.0% | |
| TGGAGATTCCATTTCAGTAC+CGG | + | chr3_1:78989758-78989777 | Msa0378240:CDS | 40.0% | |
| ! | GTTGTATATTTTGTGCTGCC+CGG | - | chr3_1:78989780-78989799 | None:intergenic | 40.0% |
| ACAACTTGCCAAGTAAGTTG+TGG | + | chr3_1:78989795-78989814 | Msa0378240:intron | 40.0% | |
| CATAAACGGGATTTGACACT+CGG | - | chr3_1:78989863-78989882 | None:intergenic | 40.0% | |
| TGGTTCACTACTGCATAAAC+GGG | - | chr3_1:78989876-78989895 | None:intergenic | 40.0% | |
| CTGGTTCACTACTGCATAAA+CGG | - | chr3_1:78989877-78989896 | None:intergenic | 40.0% | |
| TCTAACAAATCCGAAGGACA+TGG | + | chr3_1:78990137-78990156 | Msa0378240:CDS | 40.0% | |
| !! | ACGTGTGTGATTTTGATCGA+AGG | - | chr3_1:78990358-78990377 | None:intergenic | 40.0% |
| !! | TCAGATCCACTTTTACATGG+AGG | - | chr3_1:78990510-78990529 | None:intergenic | 40.0% |
| TATCTTTATGCCCTATGTGC+AGG | + | chr3_1:78990596-78990615 | Msa0378240:CDS | 40.0% | |
| !! | TAATTTGCTGCCTGCACATA+GGG | - | chr3_1:78990609-78990628 | None:intergenic | 40.0% |
| CAAGGTGACTATCACCTTTC+TGG | + | chr3_1:78986191-78986210 | Msa0378240:intron | 45.0% | |
| !! | CACACAATTTGGTTCTGCCT+CGG | + | chr3_1:78986397-78986416 | Msa0378240:intron | 45.0% |
| GCGGTTCATCGTAAACAAAC+CGG | - | chr3_1:78986889-78986908 | None:intergenic | 45.0% | |
| CGAACTTCCGGTATAAGAAG+AGG | - | chr3_1:78987172-78987191 | None:intergenic | 45.0% | |
| CTTCTTATACCGGAAGTTCG+GGG | + | chr3_1:78987172-78987191 | Msa0378240:CDS | 45.0% | |
| GTTAGTATTCCCCGAACTTC+CGG | - | chr3_1:78987184-78987203 | None:intergenic | 45.0% | |
| !! | CTGGTTGCTTGTTATGACGA+TGG | - | chr3_1:78987251-78987270 | None:intergenic | 45.0% |
| AGCCGACAATTTCAGCTCAT+TGG | + | chr3_1:78987278-78987297 | Msa0378240:CDS | 45.0% | |
| !! | GTTTCTGCTTTGAGAGAAGC+TGG | + | chr3_1:78987613-78987632 | Msa0378240:CDS | 45.0% |
| !! | TGCTTTGAGAGAAGCTGGTT+TGG | + | chr3_1:78987618-78987637 | Msa0378240:CDS | 45.0% |
| ACCAAAAGCAATGAGTGGAC+AGG | + | chr3_1:78987673-78987692 | Msa0378240:CDS | 45.0% | |
| ! | ACCTGTCCACTCATTGCTTT+TGG | - | chr3_1:78987677-78987696 | None:intergenic | 45.0% |
| TATGATGAAGGCTCTTCCGA+TGG | - | chr3_1:78987798-78987817 | None:intergenic | 45.0% | |
| CGGAAGAGCCTTCATCATAT+TGG | + | chr3_1:78987799-78987818 | Msa0378240:CDS | 45.0% | |
| GAGCCCTTCCAATATGATGA+AGG | - | chr3_1:78987810-78987829 | None:intergenic | 45.0% | |
| CCATCACCAAACCCAAAACA+TGG | - | chr3_1:78987904-78987923 | None:intergenic | 45.0% | |
| !!! | CCATGTTTTGGGTTTGGTGA+TGG | + | chr3_1:78987901-78987920 | Msa0378240:CDS | 45.0% |
| CATAGCTCAACCTCAATCCT+AGG | - | chr3_1:78988282-78988301 | None:intergenic | 45.0% | |
| TCAAGAGAAAGTCTGTGGTG+TGG | - | chr3_1:78988580-78988599 | None:intergenic | 45.0% | |
| !! | CAGGATTTCTAGTAACCTGG+CGG | - | chr3_1:78988939-78988958 | None:intergenic | 45.0% |
| ! | TGTGGACTAAGCTTTCCATG+CGG | - | chr3_1:78988967-78988986 | None:intergenic | 45.0% |
| GCGCGTATTTGACAACTTTC+AGG | + | chr3_1:78989189-78989208 | Msa0378240:CDS | 45.0% | |
| GGTTAGATTATGGAGGACAG+TGG | + | chr3_1:78989448-78989467 | Msa0378240:intron | 45.0% | |
| GGAGATTCCATTTCAGTACC+GGG | + | chr3_1:78989759-78989778 | Msa0378240:CDS | 45.0% | |
| !! | GAAACATACTGGTTCTGCAC+TGG | - | chr3_1:78990017-78990036 | None:intergenic | 45.0% |
| ! | AATCCGAAGGACATGGCTTT+TGG | + | chr3_1:78990144-78990163 | Msa0378240:CDS | 45.0% |
| CATCCAAAAGCCATGTCCTT+CGG | - | chr3_1:78990150-78990169 | None:intergenic | 45.0% | |
| ! | AAGGACATGGCTTTTGGATG+CGG | + | chr3_1:78990150-78990169 | Msa0378240:CDS | 45.0% |
| ! | CTTGGCGGGTGAAAATAGAA+TGG | - | chr3_1:78990439-78990458 | None:intergenic | 45.0% |
| ! | TTCTATTTTCACCCGCCAAG+TGG | + | chr3_1:78990439-78990458 | Msa0378240:intron | 45.0% |
| GTTTGGCCTCCATGTAAAAG+TGG | + | chr3_1:78990501-78990520 | Msa0378240:intron | 45.0% | |
| ATGTAGACTTGCAAGGAGTG+TGG | + | chr3_1:78990565-78990584 | Msa0378240:intron | 45.0% | |
| !! | GTAATTTGCTGCCTGCACAT+AGG | - | chr3_1:78990610-78990629 | None:intergenic | 45.0% |
| GTTGCTGCTGAACTCCAGAA+AGG | - | chr3_1:78986208-78986227 | None:intergenic | 50.0% | |
| CTAGAAAGTGACAACGCGTG+CGG | - | chr3_1:78986908-78986927 | None:intergenic | 50.0% | |
| !! | CGTTGTCACTTTCTAGCCTC+TGG | + | chr3_1:78986912-78986931 | Msa0378240:intron | 50.0% |
| !! | TGTCACTTTCTAGCCTCTGG+TGG | + | chr3_1:78986915-78986934 | Msa0378240:intron | 50.0% |
| ! | CTTTCTAGCCTCTGGTGGTT+TGG | + | chr3_1:78986920-78986939 | Msa0378240:intron | 50.0% |
| AGACAGAGTCCGGCCAATTA+TGG | - | chr3_1:78987857-78987876 | None:intergenic | 50.0% | |
| CGCCAGGTTACTAGAAATCC+TGG | + | chr3_1:78988937-78988956 | Msa0378240:intron | 50.0% | |
| TTGGAGTTGGAGATGGACCA+TGG | + | chr3_1:78989131-78989150 | Msa0378240:CDS | 50.0% | |
| TGGAGTTGGAGATGGACCAT+GGG | + | chr3_1:78989132-78989151 | Msa0378240:CDS | 50.0% | |
| AAGTGCTTCATCTCGTCCCA+TGG | - | chr3_1:78989151-78989170 | None:intergenic | 50.0% | |
| !! | GAACACGGAAGCATCCAAGA+AGG | + | chr3_1:78989708-78989727 | Msa0378240:CDS | 50.0% |
| ! | ATTTGCGCTTGCTGCCCTTA+TGG | + | chr3_1:78989738-78989757 | Msa0378240:CDS | 50.0% |
| !! | ATTTCCTTAGGTGGTGGGAG+AGG | - | chr3_1:78989920-78989939 | None:intergenic | 50.0% |
| GGAGCGACAAGGAAACATAC+TGG | - | chr3_1:78990028-78990047 | None:intergenic | 50.0% | |
| GAAAGATACAGGGAGCGACA+AGG | - | chr3_1:78990039-78990058 | None:intergenic | 50.0% | |
| TGCGTGGTAATTCCACTTGG+CGG | - | chr3_1:78990454-78990473 | None:intergenic | 50.0% | |
| CTCTGCGTGGTAATTCCACT+TGG | - | chr3_1:78990457-78990476 | None:intergenic | 50.0% | |
| CAAGTGGAATTACCACGCAG+AGG | + | chr3_1:78990455-78990474 | Msa0378240:intron | 50.0% | |
| TGTGCATTTGTTCCTCTGCG+TGG | - | chr3_1:78990470-78990489 | None:intergenic | 50.0% | |
| AGAAATCCTGGTACGCCGCA+TGG | + | chr3_1:78988949-78988968 | Msa0378240:CDS | 55.0% | |
| ! | TGTGCTGCCCGGTACTGAAA+TGG | - | chr3_1:78989769-78989788 | None:intergenic | 55.0% |
| AAGACCTCTCCCACCACCTA+AGG | + | chr3_1:78989913-78989932 | Msa0378240:CDS | 55.0% | |
| !! | CATACTGGTTCTGCACTGGC+TGG | - | chr3_1:78990013-78990032 | None:intergenic | 55.0% |
| GCGTGGTAATTCCACTTGGC+GGG | - | chr3_1:78990453-78990472 | None:intergenic | 55.0% | |
| AGCTTTCCATGCGGCGTACC+AGG | - | chr3_1:78988958-78988977 | None:intergenic | 60.0% | |
| !! | TCTGCACTGGCTGGAGCTGT+TGG | - | chr3_1:78990004-78990023 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 78986080 | 78990863 | 78986080 | ID=Msa0378240;Name=Msa0378240 |
| chr3_1 | mRNA | 78986080 | 78990863 | 78986080 | ID=Msa0378240-mRNA-1;Parent=Msa0378240;Name=Msa0378240-mRNA-1;_AED=0.17;_eAED=0.17;_QI=162|1|1|1|0.83|0.76|13|209|438 |
| chr3_1 | exon | 78986080 | 78986185 | 78986080 | ID=Msa0378240-mRNA-1:exon:19214;Parent=Msa0378240-mRNA-1 |
| chr3_1 | exon | 78986224 | 78986266 | 78986224 | ID=Msa0378240-mRNA-1:exon:19215;Parent=Msa0378240-mRNA-1 |
| chr3_1 | exon | 78987011 | 78987305 | 78987011 | ID=Msa0378240-mRNA-1:exon:19216;Parent=Msa0378240-mRNA-1 |
| chr3_1 | exon | 78987610 | 78987694 | 78987610 | ID=Msa0378240-mRNA-1:exon:19217;Parent=Msa0378240-mRNA-1 |
| chr3_1 | exon | 78987782 | 78987922 | 78987782 | ID=Msa0378240-mRNA-1:exon:19218;Parent=Msa0378240-mRNA-1 |
| chr3_1 | exon | 78988005 | 78988118 | 78988005 | ID=Msa0378240-mRNA-1:exon:19219;Parent=Msa0378240-mRNA-1 |
| chr3_1 | exon | 78988738 | 78988835 | 78988738 | ID=Msa0378240-mRNA-1:exon:19220;Parent=Msa0378240-mRNA-1 |
| chr3_1 | exon | 78988943 | 78989022 | 78988943 | ID=Msa0378240-mRNA-1:exon:19221;Parent=Msa0378240-mRNA-1 |
| chr3_1 | exon | 78989105 | 78989210 | 78989105 | ID=Msa0378240-mRNA-1:exon:19222;Parent=Msa0378240-mRNA-1 |
| chr3_1 | exon | 78989679 | 78989806 | 78989679 | ID=Msa0378240-mRNA-1:exon:19223;Parent=Msa0378240-mRNA-1 |
| chr3_1 | exon | 78989886 | 78990027 | 78989886 | ID=Msa0378240-mRNA-1:exon:19224;Parent=Msa0378240-mRNA-1 |
| chr3_1 | exon | 78990123 | 78990179 | 78990123 | ID=Msa0378240-mRNA-1:exon:19225;Parent=Msa0378240-mRNA-1 |
| chr3_1 | exon | 78990571 | 78990863 | 78990571 | ID=Msa0378240-mRNA-1:exon:19226;Parent=Msa0378240-mRNA-1 |
| chr3_1 | five_prime_UTR | 78986080 | 78986185 | 78986080 | ID=Msa0378240-mRNA-1:five_prime_utr;Parent=Msa0378240-mRNA-1 |
| chr3_1 | five_prime_UTR | 78986224 | 78986266 | 78986224 | ID=Msa0378240-mRNA-1:five_prime_utr;Parent=Msa0378240-mRNA-1 |
| chr3_1 | five_prime_UTR | 78987011 | 78987023 | 78987011 | ID=Msa0378240-mRNA-1:five_prime_utr;Parent=Msa0378240-mRNA-1 |
| chr3_1 | CDS | 78987024 | 78987305 | 78987024 | ID=Msa0378240-mRNA-1:cds;Parent=Msa0378240-mRNA-1 |
| chr3_1 | CDS | 78987610 | 78987694 | 78987610 | ID=Msa0378240-mRNA-1:cds;Parent=Msa0378240-mRNA-1 |
| chr3_1 | CDS | 78987782 | 78987922 | 78987782 | ID=Msa0378240-mRNA-1:cds;Parent=Msa0378240-mRNA-1 |
| chr3_1 | CDS | 78988005 | 78988118 | 78988005 | ID=Msa0378240-mRNA-1:cds;Parent=Msa0378240-mRNA-1 |
| chr3_1 | CDS | 78988738 | 78988835 | 78988738 | ID=Msa0378240-mRNA-1:cds;Parent=Msa0378240-mRNA-1 |
| chr3_1 | CDS | 78988943 | 78989022 | 78988943 | ID=Msa0378240-mRNA-1:cds;Parent=Msa0378240-mRNA-1 |
| chr3_1 | CDS | 78989105 | 78989210 | 78989105 | ID=Msa0378240-mRNA-1:cds;Parent=Msa0378240-mRNA-1 |
| chr3_1 | CDS | 78989679 | 78989806 | 78989679 | ID=Msa0378240-mRNA-1:cds;Parent=Msa0378240-mRNA-1 |
| chr3_1 | CDS | 78989886 | 78990027 | 78989886 | ID=Msa0378240-mRNA-1:cds;Parent=Msa0378240-mRNA-1 |
| chr3_1 | CDS | 78990123 | 78990179 | 78990123 | ID=Msa0378240-mRNA-1:cds;Parent=Msa0378240-mRNA-1 |
| chr3_1 | CDS | 78990571 | 78990654 | 78990571 | ID=Msa0378240-mRNA-1:cds;Parent=Msa0378240-mRNA-1 |
| chr3_1 | three_prime_UTR | 78990655 | 78990863 | 78990655 | ID=Msa0378240-mRNA-1:three_prime_utr;Parent=Msa0378240-mRNA-1 |
| Gene Sequence |
| Protein sequence |
