AlfalfaGEDB | Msa0378240

M. sativa cultivar zhongmu-4 / Msa0378240

KEGG: K16280
GO: GO:0001101 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006807 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009987 GO:0010033 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0023052 GO:0032446 GO:0032870 GO:0036211 GO:0042221 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0070647 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0071704 GO:0098542 GO:0140096 GO:1901564 GO:1901700 GO:1901701
PFAM: PF07002.19

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0378240	KEH35605.1	97.032	438	13	0	1	438	18	455	0.0	892

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0378240	sp\|Q8RX26\|RGLG3_ARATH	70.811	370	102	3	72	438	1	367	0.0	552

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0378240	A0A072VBP5	97.032	438	13	0	1	438	18	455	0.0	892

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0107830	Msa0378240	0.805427	1.342166e-49	-8.615850e-47
Msa0129290	Msa0378240	0.800583	1.346642e-48	-8.615850e-47
Msa0196420	Msa0378240	0.803999	2.666106e-49	-8.615850e-47
Msa0199860	Msa0378240	0.827874	1.229294e-54	-8.615850e-47
Msa0207930	Msa0378240	0.809766	1.609105e-50	-8.615850e-47
Msa0207970	Msa0378240	0.824988	5.987463e-54	-8.615850e-47
Msa0257930	Msa0378240	0.860563	1.893077e-63	-8.615850e-47
Msa0267900	Msa0378240	0.804090	2.552150e-49	-8.615850e-47
Msa0271700	Msa0378240	0.800126	1.667918e-48	-8.615850e-47
Msa0291880	Msa0378240	0.839325	1.695230e-57	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0378240	MtrunA17_Chr3g0130411	97.032	438	13	0	1	438	1	438	0.0	892
Msa0378240	MtrunA17_Chr3g0116661	61.436	376	126	3	77	437	64	435	7.43e-168	478
Msa0378240	MtrunA17_Chr3g0123481	60.500	400	134	5	62	437	71	470	9.48e-168	479
Msa0378240	MtrunA17_Chr6g0458051	58.690	397	126	3	75	437	94	486	2.27e-167	479
Msa0378240	MtrunA17_Chr7g0226791	63.536	362	123	4	85	437	84	445	2.43e-166	475
Msa0378240	MtrunA17_Chr8g0381321	59.126	389	143	3	63	437	89	475	6.21e-165	473
Msa0378240	MtrunA17_Chr2g0309791	60.615	358	132	2	80	437	67	415	1.02e-157	452
Msa0378240	MtrunA17_Chr2g0309781	60.446	359	127	3	80	438	59	402	6.17e-156	447
Msa0378240	MtrunA17_Chr8g0356381	59.733	375	137	4	67	438	43	406	3.58e-152	437
Msa0378240	MtrunA17_Chr2g0309821	60.725	331	118	2	80	410	53	371	4.07e-140	405

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0378240	AT5G63970.2	70.811	370	102	3	72	438	1	367	0.0	552
Msa0378240	AT5G63970.1	70.811	370	102	3	72	438	1	367	0.0	552
Msa0378240	AT3G01650.2	61.376	378	134	3	68	437	116	489	3.11e-168	482
Msa0378240	AT3G01650.1	61.376	378	134	3	68	437	116	489	3.11e-168	482
Msa0378240	AT5G14420.3	58.961	385	135	2	73	437	87	468	4.70e-164	470
Msa0378240	AT5G14420.2	58.961	385	135	2	73	437	87	468	4.70e-164	470
Msa0378240	AT5G14420.4	58.961	385	135	2	73	437	87	468	4.70e-164	470
Msa0378240	AT5G14420.1	58.961	385	135	2	73	437	87	468	4.70e-164	470
Msa0378240	AT1G67800.4	55.665	406	161	4	46	437	33	433	1.82e-156	450
Msa0378240	AT1G67800.1	55.665	406	161	4	46	437	33	433	1.82e-156	450

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Find 118 sgRNAs with CRISPR-Local

Find 274 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCTGACAGTTTCAAATG+TGG	0.629100	3_1:-78988100	None:intergenic
AAACTCCCAGTATAAGAAGA+AGG	0.556963	3_1:-78987123	None:intergenic
AAAGATCATGTCTGAGAACA+CGG	0.629668	3_1:+78989693	Msa0378240:CDS
AAATTGTCGGCTATATATGC+TGG	0.574282	3_1:-78987267	None:intergenic
AACACCCTCCTAATTATGAT+GGG	0.599452	3_1:+78987073	Msa0378240:CDS
AACTCCCATCATAATTAGGA+GGG	0.620871	3_1:-78987077	None:intergenic
AAGACCTCTCCCACCACCTA+AGG	0.533866	3_1:+78989913	Msa0378240:CDS
AAGCAATCTCCATAATTGGC+CGG	0.575523	3_1:+78987845	Msa0378240:CDS
AAGCAGGCTTAGTAGCAATA+TGG	0.340330	3_1:+78987005	Msa0378240:intron
AAGTGCTTCATCTCGTCCCA+TGG	0.572627	3_1:-78989148	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CTGTAAATGACACCAAAATA+TGG	+	chr3_1:78986510-78986529	Msa0378240:intron	30.0%
AAATGACACCAAAATATGGT+TGG	+	chr3_1:78986514-78986533	Msa0378240:intron	30.0%
ATACTTCAGAAAAGACACTA+TGG	-	chr3_1:78986826-78986845	None:intergenic	30.0%
ACAAGAAACACTAGAATAAC+CGG	+	chr3_1:78986867-78986886	Msa0378240:intron	30.0%
CTTTCAGTAATATGAAGCAA+CGG	-	chr3_1:78986988-78987007	None:intergenic	30.0%
ATCAACCTTCTTCTTATACT+GGG	+	chr3_1:78987118-78987137	Msa0378240:CDS	30.0%
ATAGAGCATATTAGCAGTAA+AGG	+	chr3_1:78987336-78987355	Msa0378240:intron	30.0%
TAGAGCATATTAGCAGTAAA+GGG	+	chr3_1:78987337-78987356	Msa0378240:intron	30.0%
ATAGAGCATATTAGCAGTAA+AGG	+	chr3_1:78987336-78987355	Msa0378240:intron	30.0%
TAGAGCATATTAGCAGTAAA+GGG	+	chr3_1:78987337-78987356	Msa0378240:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_1	gene	78986080	78990863	78986080	ID=Msa0378240;Name=Msa0378240
chr3_1	mRNA	78986080	78990863	78986080	ID=Msa0378240-mRNA-1;Parent=Msa0378240;Name=Msa0378240-mRNA-1;_AED=0.17;_eAED=0.17;_QI=162\|1\|1\|1\|0.83\|0.76\|13\|209\|438
chr3_1	exon	78986080	78986185	78986080	ID=Msa0378240-mRNA-1:exon:19214;Parent=Msa0378240-mRNA-1
chr3_1	exon	78986224	78986266	78986224	ID=Msa0378240-mRNA-1:exon:19215;Parent=Msa0378240-mRNA-1
chr3_1	exon	78987011	78987305	78987011	ID=Msa0378240-mRNA-1:exon:19216;Parent=Msa0378240-mRNA-1
chr3_1	exon	78987610	78987694	78987610	ID=Msa0378240-mRNA-1:exon:19217;Parent=Msa0378240-mRNA-1
chr3_1	exon	78987782	78987922	78987782	ID=Msa0378240-mRNA-1:exon:19218;Parent=Msa0378240-mRNA-1
chr3_1	exon	78988005	78988118	78988005	ID=Msa0378240-mRNA-1:exon:19219;Parent=Msa0378240-mRNA-1
chr3_1	exon	78988738	78988835	78988738	ID=Msa0378240-mRNA-1:exon:19220;Parent=Msa0378240-mRNA-1
chr3_1	exon	78988943	78989022	78988943	ID=Msa0378240-mRNA-1:exon:19221;Parent=Msa0378240-mRNA-1
chr3_1	exon	78989105	78989210	78989105	ID=Msa0378240-mRNA-1:exon:19222;Parent=Msa0378240-mRNA-1
chr3_1	exon	78989679	78989806	78989679	ID=Msa0378240-mRNA-1:exon:19223;Parent=Msa0378240-mRNA-1
chr3_1	exon	78989886	78990027	78989886	ID=Msa0378240-mRNA-1:exon:19224;Parent=Msa0378240-mRNA-1
chr3_1	exon	78990123	78990179	78990123	ID=Msa0378240-mRNA-1:exon:19225;Parent=Msa0378240-mRNA-1
chr3_1	exon	78990571	78990863	78990571	ID=Msa0378240-mRNA-1:exon:19226;Parent=Msa0378240-mRNA-1
chr3_1	five_prime_UTR	78986080	78986185	78986080	ID=Msa0378240-mRNA-1:five_prime_utr;Parent=Msa0378240-mRNA-1
chr3_1	five_prime_UTR	78986224	78986266	78986224	ID=Msa0378240-mRNA-1:five_prime_utr;Parent=Msa0378240-mRNA-1
chr3_1	five_prime_UTR	78987011	78987023	78987011	ID=Msa0378240-mRNA-1:five_prime_utr;Parent=Msa0378240-mRNA-1
chr3_1	CDS	78987024	78987305	78987024	ID=Msa0378240-mRNA-1:cds;Parent=Msa0378240-mRNA-1
chr3_1	CDS	78987610	78987694	78987610	ID=Msa0378240-mRNA-1:cds;Parent=Msa0378240-mRNA-1
chr3_1	CDS	78987782	78987922	78987782	ID=Msa0378240-mRNA-1:cds;Parent=Msa0378240-mRNA-1
chr3_1	CDS	78988005	78988118	78988005	ID=Msa0378240-mRNA-1:cds;Parent=Msa0378240-mRNA-1
chr3_1	CDS	78988738	78988835	78988738	ID=Msa0378240-mRNA-1:cds;Parent=Msa0378240-mRNA-1
chr3_1	CDS	78988943	78989022	78988943	ID=Msa0378240-mRNA-1:cds;Parent=Msa0378240-mRNA-1
chr3_1	CDS	78989105	78989210	78989105	ID=Msa0378240-mRNA-1:cds;Parent=Msa0378240-mRNA-1
chr3_1	CDS	78989679	78989806	78989679	ID=Msa0378240-mRNA-1:cds;Parent=Msa0378240-mRNA-1
chr3_1	CDS	78989886	78990027	78989886	ID=Msa0378240-mRNA-1:cds;Parent=Msa0378240-mRNA-1
chr3_1	CDS	78990123	78990179	78990123	ID=Msa0378240-mRNA-1:cds;Parent=Msa0378240-mRNA-1
chr3_1	CDS	78990571	78990654	78990571	ID=Msa0378240-mRNA-1:cds;Parent=Msa0378240-mRNA-1
chr3_1	three_prime_UTR	78990655	78990863	78990655	ID=Msa0378240-mRNA-1:three_prime_utr;Parent=Msa0378240-mRNA-1

Gene Sequence

>Msa0378240

ATGGGAAATACAGAATCAATGTCTGAATCTCAACATGAATTTTACTACCAACACCCTCCTAATTATGATGGGAGTTCAGTGAGTAATAGTTATCATCAACCTTCTTCTTATACTGGGAGTTTGGATAGCACTACCTATGATCAACCCTCTTCTTATACCGGAAGTTCGGGGAATACTAACCACCATCAATCATCTTCACATGCTACAAGTTCGGTGAATACTCACCATCGTCATAACAAGCAACCAGCATATATAGCCGACAATTTCAGCTCATTGGATCAGGTTGTTTCTGCTTTGAGAGAAGCTGGTTTGGAATCTTCAAATTTGATACTTGGTATTGATTTCACCAAAAGCAATGAGTGGACAGGTAAGTATTCGTTCCATCGGAAGAGCCTTCATCATATTGGAAGGGCTCCTAATCCATATGAGCAAGCAATCTCCATAATTGGCCGGACTCTGTCTACTTTTGATGAAGATAATCTGATACCATGTTTTGGGTTTGGTGATGCTTCTACACACGATCAGAATGTGTTCAGCTTTTATCCTGATAATAGAGTTTGTCATGGTTTTGAGGAAGTACTTACACGCTATAGACTGATTATTCCACATTTGAAACTGTCAGGGCCAACTTCATTTGCCCCTGTAATTGATGCAGCAATTGACATTGTGGAACGAAACAACGGTCAATATCACGTTCTTGTCATTATTGCTGATGGACAGGTTACTAGAAATCCTGGTACGCCGCATGGAAAGCTTAGTCCACAAGAACAAGCAACCATTACTTCCATAATTGCTGCAAGTCATTATCCTCTCTCAATTATTTTGGTTGGAGTTGGAGATGGACCATGGGACGAGATGAAGCACTTTGACGATAACATTACTGGGCGCGTATTTGACAACTTTCAGTTTGTAAACTTCACAAAGATCATGTCTGAGAACACGGAAGCATCCAAGAAGGAAACAGAATTTGCGCTTGCTGCCCTTATGGAGATTCCATTTCAGTACCGGGCAGCACAAAATATACAACTTGCCAATAGTGAACCAGTTCATTATCAACATAAAAGACCTCTCCCACCACCTAAGGAAATAATAGATCACGATAATGCATTCATAGTGACTCCACGCATAACAAATTTCGATTCAATTGAACCAACAGCTCCAGCCAGTGCAGAACCAGTATGCCCCATTTGTCTAACAAATCCGAAGGACATGGCTTTTGGATGCGGTCATACAACTTGCAAGGAGTGTGGTGCAACATTATCTTTATGCCCTATGTGCAGGCAGCAAATTACTACTCGCTTGAGATTATATACTTGA

Protein sequence

>Msa0378240

MGNTESMSESQHEFYYQHPPNYDGSSVSNSYHQPSSYTGSLDSTTYDQPSSYTGSSGNTNHHQSSSHATSSVNTHHRHNKQPAYIADNFSSLDQVVSALREAGLESSNLILGIDFTKSNEWTGKYSFHRKSLHHIGRAPNPYEQAISIIGRTLSTFDEDNLIPCFGFGDASTHDQNVFSFYPDNRVCHGFEEVLTRYRLIIPHLKLSGPTSFAPVIDAAIDIVERNNGQYHVLVIIADGQVTRNPGTPHGKLSPQEQATITSIIAASHYPLSIILVGVGDGPWDEMKHFDDNITGRVFDNFQFVNFTKIMSENTEASKKETEFALAALMEIPFQYRAAQNIQLANSEPVHYQHKRPLPPPKEIIDHDNAFIVTPRITNFDSIEPTAPASAEPVCPICLTNPKDMAFGCGHTTCKECGATLSLCPMCRQQITTRLRLYT*