AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0303120

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0303120 MtrunA17_Chr2g0329641 95.536 336 12 1 1 333 1 336 0.0 676
Msa0303120 MtrunA17_Chr7g0254231 44.371 302 154 4 33 332 22 311 1.09e-80 248
Msa0303120 MtrunA17_Chr7g0254201 40.594 303 169 4 33 333 20 313 5.25e-76 236
Msa0303120 MtrunA17_Chr7g0258811 38.988 336 183 8 5 332 50 371 4.95e-75 235
Msa0303120 MtrunA17_Chr1g0175561 41.748 309 167 7 32 332 23 326 2.15e-74 232
Msa0303120 MtrunA17_Chr5g0405991 39.458 332 180 8 4 332 3 316 8.51e-71 223
Msa0303120 MtrunA17_Chr2g0299691 38.485 330 190 5 12 333 35 359 8.17e-70 221
Msa0303120 MtrunA17_Chr8g0371381 38.614 303 174 6 33 332 26 319 2.32e-69 219
Msa0303120 MtrunA17_Chr2g0292241 37.135 342 193 7 1 332 1 330 3.67e-69 219
Msa0303120 MtrunA17_Chr2g0292211 37.574 338 191 8 3 332 16 341 6.27e-69 219
Msa0303120 MtrunA17_Chr6g0460711 39.934 303 172 4 32 332 20 314 2.83e-68 216
Msa0303120 MtrunA17_Chr2g0322861 37.771 323 191 5 15 333 71 387 3.52e-68 218
Msa0303120 MtrunA17_Chr4g0063671 39.550 311 176 5 28 332 16 320 4.97e-67 213
Msa0303120 MtrunA17_Chr2g0279041 37.500 336 192 6 2 332 3 325 5.16e-67 213
Msa0303120 MtrunA17_Chr4g0070951 37.942 311 181 5 30 333 25 330 7.80e-67 213
Msa0303120 MtrunA17_Chr4g0024121 38.080 323 190 4 15 332 9 326 6.39e-66 210
Msa0303120 MtrunA17_Chr2g0316831 37.879 330 170 7 32 328 111 438 1.31e-65 213
Msa0303120 MtrunA17_Chr7g0268501 35.928 334 195 6 3 332 2 320 1.37e-65 209
Msa0303120 MtrunA17_Chr7g0268521 35.928 334 195 6 3 332 2 320 1.37e-65 209
Msa0303120 MtrunA17_Chr3g0136751 38.957 326 183 6 11 332 9 322 2.37e-65 209
Msa0303120 MtrunA17_Chr2g0316481 37.500 328 174 6 32 328 75 402 4.37e-65 211
Msa0303120 MtrunA17_Chr2g0292251 37.179 312 178 7 32 333 27 330 5.20e-65 209
Msa0303120 MtrunA17_Chr1g0204011 36.890 328 188 7 9 332 10 322 9.66e-65 207
Msa0303120 MtrunA17_Chr2g0316791 37.500 328 174 6 32 328 75 402 2.35e-64 209
Msa0303120 MtrunA17_Chr2g0291751 36.036 333 188 8 11 333 14 331 3.29e-64 207
Msa0303120 MtrunA17_Chr5g0400331 38.961 308 172 6 36 332 29 331 4.19e-64 206
Msa0303120 MtrunA17_Chr5g0402571 39.542 306 175 5 32 332 26 326 5.10e-64 205
Msa0303120 MtrunA17_Chr4g0076211 40.134 299 168 6 37 333 45 334 6.43e-64 206
Msa0303120 MtrunA17_Chr2g0292261 35.671 328 199 6 12 332 8 330 1.21e-63 205
Msa0303120 MtrunA17_Chr8g0372601 37.126 334 177 9 14 332 15 330 1.30e-63 204
Msa0303120 MtrunA17_Chr3g0128061 36.716 335 194 6 3 332 5 326 2.60e-63 204
Msa0303120 MtrunA17_Chr5g0402581 39.216 306 176 5 32 332 26 326 4.52e-63 203
Msa0303120 MtrunA17_Chr5g0404721 38.284 303 176 6 36 332 33 330 5.26e-63 203
Msa0303120 MtrunA17_Chr1g0194151 37.576 330 194 7 11 332 8 333 5.63e-63 203
Msa0303120 MtrunA17_Chr2g0316191 36.778 329 176 6 32 328 75 403 6.26e-63 205
Msa0303120 MtrunA17_Chr3g0129051 37.338 308 174 6 32 332 27 322 1.05e-62 202
Msa0303120 MtrunA17_Chr5g0438021 35.866 329 189 7 11 332 12 325 9.40e-62 199
Msa0303120 MtrunA17_Chr1g0157051 38.333 300 172 7 33 328 24 314 1.24e-61 199
Msa0303120 MtrunA17_Chr2g0292271 35.370 311 183 6 32 332 28 330 1.49e-61 200
Msa0303120 MtrunA17_Chr2g0292181 34.743 331 198 7 12 332 17 339 1.55e-61 200
Msa0303120 MtrunA17_Chr2g0292111 34.242 330 205 6 11 333 7 331 3.74e-61 199
Msa0303120 MtrunA17_Chr7g0224371 37.542 301 170 5 37 332 35 322 5.17e-61 197
Msa0303120 MtrunA17_Chr1g0194271 37.538 333 197 5 11 332 8 340 1.22e-60 197
Msa0303120 MtrunA17_Chr2g0292151 34.118 340 208 6 1 333 1 331 2.38e-60 197
Msa0303120 MtrunA17_Chr2g0278671 40.193 311 170 7 30 332 21 323 9.39e-60 194
Msa0303120 MtrunA17_Chr4g0013171 37.785 307 172 7 33 332 27 321 1.04e-59 194
Msa0303120 MtrunA17_Chr7g0225221 33.432 338 201 7 1 332 1 320 1.83e-59 193
Msa0303120 MtrunA17_Chr2g0292091 36.786 280 165 5 60 332 51 325 3.64e-59 193
Msa0303120 MtrunA17_Chr5g0421411 39.362 282 148 10 65 332 13 285 6.52e-59 191
Msa0303120 MtrunA17_Chr2g0311251 35.976 328 178 7 32 328 10 336 7.46e-59 192
Msa0303120 MtrunA17_Chr3g0114451 35.207 338 193 6 1 332 1 318 7.53e-59 192
Msa0303120 MtrunA17_Chr1g0188431 35.821 335 198 4 1 332 7 327 1.53e-58 191
Msa0303120 MtrunA17_Chr4g0046131 35.736 333 200 7 5 328 15 342 1.58e-58 192
Msa0303120 MtrunA17_Chr4g0075241 35.119 336 201 6 5 332 1 327 2.53e-58 191
Msa0303120 MtrunA17_Chr3g0129041 36.585 328 185 7 12 332 11 322 3.39e-58 190
Msa0303120 MtrunA17_Chr1g0164891 37.459 307 180 7 34 332 90 392 4.04e-58 192
Msa0303120 MtrunA17_Chr4g0013201 35.897 312 180 6 29 332 39 338 5.41e-58 190
Msa0303120 MtrunA17_Chr4g0043391 36.012 336 190 9 7 332 4 324 7.26e-58 189
Msa0303120 MtrunA17_Chr3g0129061 36.280 328 186 7 12 332 11 322 9.48e-58 189
Msa0303120 MtrunA17_Chr1g0197411 33.529 340 210 6 1 333 1 331 1.36e-57 189
Msa0303120 MtrunA17_Chr2g0292101 37.143 280 164 4 60 332 52 326 1.42e-57 189
Msa0303120 MtrunA17_Chr7g0244461 32.934 334 197 7 4 332 1 312 4.41e-57 187
Msa0303120 MtrunA17_Chr3g0106921 34.663 326 193 6 13 332 9 320 5.98e-57 187
Msa0303120 MtrunA17_Chr4g0013821 34.426 305 187 5 33 332 28 324 6.86e-57 187
Msa0303120 MtrunA17_Chr4g0013181 37.171 304 172 6 36 332 62 353 1.52e-56 187
Msa0303120 MtrunA17_Chr1g0155611 37.134 307 181 5 33 332 46 347 1.54e-56 187
Msa0303120 MtrunA17_Chr2g0311241 32.880 368 176 7 32 328 59 426 1.87e-56 189
Msa0303120 MtrunA17_Chr2g0320051 34.756 328 192 7 11 332 7 318 1.90e-56 186
Msa0303120 MtrunA17_Chr4g0038161 34.132 334 198 7 7 332 1 320 1.98e-56 186
Msa0303120 MtrunA17_Chr4g0038151 34.132 334 199 8 7 332 1 321 2.00e-56 186
Msa0303120 MtrunA17_Chr4g0013721 35.667 300 180 5 38 332 105 396 2.54e-56 188
Msa0303120 MtrunA17_Chr1g0148021 32.849 344 203 7 1 332 1 328 6.05e-56 184
Msa0303120 MtrunA17_Chr2g0320071 33.033 333 202 5 5 332 1 317 6.61e-56 184
Msa0303120 MtrunA17_Chr5g0432441 36.156 307 181 5 32 332 29 326 7.26e-56 184
Msa0303120 MtrunA17_Chr3g0107881 36.637 333 181 10 11 332 11 324 8.25e-56 184
Msa0303120 MtrunA17_Chr2g0292291 33.531 337 212 6 5 333 1 333 8.57e-56 185
Msa0303120 MtrunA17_Chr2g0320061 34.146 328 194 7 11 332 7 318 1.65e-55 183
Msa0303120 MtrunA17_Chr2g0320101 34.451 328 192 7 11 332 7 317 1.77e-55 183
Msa0303120 MtrunA17_Chr6g0467251 34.639 332 196 6 11 333 10 329 2.60e-55 184
Msa0303120 MtrunA17_Chr5g0401431 33.333 309 185 5 32 328 26 325 3.50e-55 182
Msa0303120 MtrunA17_Chr6g0477071 33.134 335 201 6 1 332 28 342 4.22e-55 183
Msa0303120 MtrunA17_Chr4g0072091 35.505 307 186 5 32 332 23 323 5.22e-55 182
Msa0303120 MtrunA17_Chr4g0068621 36.877 301 177 5 38 332 43 336 1.00e-54 182
Msa0303120 MtrunA17_Chr2g0296621 37.294 303 176 6 33 332 50 341 1.10e-54 182
Msa0303120 MtrunA17_Chr2g0279061 39.847 261 146 5 77 332 12 266 1.14e-54 179
Msa0303120 MtrunA17_Chr2g0320031 35.061 328 195 8 11 332 4 319 1.23e-54 181
Msa0303120 MtrunA17_Chr4g0038171 35.161 310 181 7 32 332 23 321 1.28e-54 181
Msa0303120 MtrunA17_Chr4g0013191 37.500 296 170 6 42 332 55 340 2.29e-54 181
Msa0303120 MtrunA17_Chr5g0432341 34.743 331 193 9 13 333 5 322 7.24e-54 179
Msa0303120 MtrunA17_Chr2g0320091 33.951 324 195 7 15 332 8 318 1.80e-53 178
Msa0303120 MtrunA17_Chr5g0432351 34.018 341 193 11 3 333 4 322 2.37e-53 178
Msa0303120 MtrunA17_Chr4g0074851 34.385 317 191 5 24 333 23 329 1.44e-52 176
Msa0303120 MtrunA17_Chr1g0181481 33.550 307 193 4 30 332 24 323 2.00e-52 176
Msa0303120 MtrunA17_Chr3g0106901 36.601 306 177 6 32 332 30 323 2.67e-52 175
Msa0303120 MtrunA17_Chr6g0467121 32.635 334 205 7 6 332 43 363 3.04e-52 177
Msa0303120 MtrunA17_Chr1g0213061 32.628 331 208 6 7 332 1 321 4.01e-52 175
Msa0303120 MtrunA17_Chr1g0181511 32.248 307 197 4 30 332 24 323 4.18e-52 174
Msa0303120 MtrunA17_Chr5g0432331 35.256 312 179 9 32 333 55 353 1.49e-51 174
Msa0303120 MtrunA17_Chr1g0181431 32.787 305 194 4 32 332 26 323 6.67e-51 171
Msa0303120 MtrunA17_Chr6g0467161 32.424 330 203 6 11 332 19 336 2.53e-50 170
Msa0303120 MtrunA17_Chr7g0244451 32.923 325 197 6 13 332 8 316 6.32e-50 169
Msa0303120 MtrunA17_Chr6g0451571 36.364 308 183 7 32 332 33 334 1.31e-49 168
Msa0303120 MtrunA17_Chr4g0053871 32.787 305 187 6 32 328 26 320 2.71e-49 167
Msa0303120 MtrunA17_Chr4g0004591 33.227 313 155 5 33 328 77 352 4.09e-49 167
Msa0303120 MtrunA17_Chr5g0413051 31.833 311 201 4 30 332 70 377 4.95e-48 166
Msa0303120 MtrunA17_Chr8g0364291 31.515 330 212 6 11 332 1 324 3.96e-47 162
Msa0303120 MtrunA17_Chr2g0316811 37.339 233 125 3 32 243 49 281 7.26e-42 148
Msa0303120 MtrunA17_Chr5g0432401 33.550 307 142 9 33 329 29 283 1.21e-40 144
Msa0303120 MtrunA17_Chr2g0292281 35.814 215 119 3 122 332 17 216 3.67e-40 141
Msa0303120 MtrunA17_Chr2g0316141 33.333 282 138 7 79 328 11 274 1.08e-39 141
Msa0303120 MtrunA17_Chr2g0316181 33.333 282 138 7 79 328 11 274 1.08e-39 141
Msa0303120 MtrunA17_Chr3g0114461 31.633 196 117 5 141 332 10 192 6.77e-26 102
Msa0303120 MtrunA17_Chr1g0181501 29.897 194 126 4 141 332 4 189 5.33e-23 94.4
Msa0303120 MtrunA17_Chr2g0316771 30.055 183 103 2 173 330 2 184 5.91e-23 94.4
Msa0303120 MtrunA17_Chr3g0114491 44.545 110 58 1 30 136 15 124 2.92e-20 85.5
Msa0303120 MtrunA17_Chr6g0468731 58.462 65 26 1 72 136 22 85 1.96e-18 79.0
Msa0303120 MtrunA17_Chr3g0104101 33.548 155 83 8 188 332 5 149 5.45e-18 79.7
Msa0303120 MtrunA17_Chr7g0254181 39.216 102 61 1 93 194 22 122 8.82e-17 76.6
Msa0303120 MtrunA17_Chr1g0181491 38.053 113 67 2 30 140 9 120 3.51e-16 74.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0303120 AT5G24070.1 63.393 336 115 3 4 332 1 335 9.04e-158 445
Msa0303120 AT2G43480.1 65.677 303 101 2 32 332 34 335 1.07e-156 442
Msa0303120 AT5G22410.1 40.741 324 179 6 11 331 11 324 1.04e-74 233
Msa0303120 AT5G17820.1 40.594 303 166 3 32 332 23 313 1.64e-74 232
Msa0303120 AT3G03670.1 40.656 305 172 3 32 332 22 321 2.86e-73 229
Msa0303120 AT5G17820.2 40.594 303 166 3 32 332 76 366 4.22e-73 230
Msa0303120 AT5G06730.1 37.764 331 190 6 9 332 13 334 1.70e-71 226
Msa0303120 AT5G06720.1 37.386 329 190 6 11 332 14 333 2.87e-70 222
Msa0303120 AT5G15180.1 39.474 304 174 4 33 332 32 329 4.00e-70 221
Msa0303120 AT2G41480.1 42.345 307 163 6 33 332 29 328 5.23e-69 219
Msa0303120 AT1G34510.1 39.344 305 165 6 32 332 21 309 2.42e-68 216
Msa0303120 AT5G19880.1 40.000 335 168 10 12 332 14 329 8.32e-68 216
Msa0303120 AT5G51890.1 39.450 327 182 6 11 332 7 322 1.77e-67 214
Msa0303120 AT5G39580.1 39.815 324 186 6 11 332 3 319 2.20e-67 214
Msa0303120 AT5G66390.1 39.144 327 186 7 12 332 14 333 2.57e-67 214
Msa0303120 AT4G26010.1 39.016 305 168 5 32 333 21 310 3.75e-67 213
Msa0303120 AT1G05260.1 38.636 308 181 5 30 333 23 326 6.23e-67 213
Msa0303120 AT4G26010.2 39.016 305 168 5 32 333 49 338 9.79e-67 213
Msa0303120 AT4G11290.1 38.188 309 181 4 30 332 22 326 9.91e-67 213
Msa0303120 AT5G19890.1 37.879 330 184 8 11 333 13 328 1.63e-66 212
Msa0303120 AT5G42180.1 40.000 300 169 6 33 329 23 314 1.68e-66 212
Msa0303120 AT3G32980.1 37.461 323 185 7 20 333 21 335 9.24e-66 211
Msa0303120 AT5G64120.1 38.532 327 189 6 11 332 9 328 2.54e-65 209
Msa0303120 AT1G05240.1 37.582 306 179 4 33 332 26 325 3.74e-65 209
Msa0303120 AT1G05250.1 37.582 306 179 4 33 332 26 325 3.74e-65 209
Msa0303120 AT4G36430.1 36.196 326 193 6 13 332 14 330 4.90e-65 209
Msa0303120 AT3G50990.1 36.556 331 191 7 9 332 23 341 1.30e-64 208
Msa0303120 AT4G33870.1 35.455 330 179 4 33 328 68 397 1.82e-64 209
Msa0303120 AT3G01190.1 38.188 309 183 3 26 332 19 321 1.15e-63 205
Msa0303120 AT2G18140.1 35.484 341 207 8 1 333 1 336 1.68e-63 205
Msa0303120 AT3G21770.1 36.393 305 186 4 28 328 24 324 4.97e-63 203
Msa0303120 AT3G49110.1 36.747 332 192 8 11 333 15 337 1.25e-62 203
Msa0303120 AT2G39040.1 40.453 309 173 7 32 332 45 350 1.51e-62 203
Msa0303120 AT1G30870.1 40.328 305 167 6 33 332 51 345 2.91e-62 202
Msa0303120 AT2G18150.1 35.224 335 200 8 11 333 8 337 3.61e-62 201
Msa0303120 AT5G14130.1 34.431 334 194 7 10 332 11 330 4.83e-62 201
Msa0303120 AT3G49120.1 36.747 332 192 9 11 333 14 336 1.02e-61 201
Msa0303120 AT5G14130.2 34.431 334 194 7 10 332 52 371 1.80e-61 201
Msa0303120 AT1G68850.1 34.503 342 207 8 1 332 1 335 4.12e-61 199
Msa0303120 AT2G24800.1 37.419 310 175 6 32 332 30 329 1.05e-60 197
Msa0303120 AT4G31760.1 35.294 306 186 5 32 332 28 326 9.57e-60 195
Msa0303120 AT5G05340.1 34.839 310 183 5 30 332 27 324 2.51e-59 194
Msa0303120 AT2G38380.1 35.366 328 193 7 16 332 14 333 2.78e-59 194
Msa0303120 AT5G64110.1 37.705 305 181 3 31 332 32 330 1.34e-58 192
Msa0303120 AT1G14550.1 36.013 311 179 6 30 332 23 321 2.13e-58 191
Msa0303120 AT5G58400.1 36.615 325 189 6 14 332 12 325 2.45e-58 191
Msa0303120 AT2G22420.1 35.621 306 184 5 33 333 23 320 3.50e-58 191
Msa0303120 AT4G08770.1 39.362 282 157 7 60 332 51 327 5.77e-58 191
Msa0303120 AT2G38390.1 35.385 325 197 6 16 332 14 333 7.50e-58 191
Msa0303120 AT1G49570.1 37.255 306 181 6 32 330 47 348 1.05e-57 190
Msa0303120 AT2G18980.1 34.462 325 200 6 14 332 6 323 1.70e-57 189
Msa0303120 AT4G37530.1 35.410 305 184 5 32 328 26 325 7.25e-57 187
Msa0303120 AT5G64100.1 38.127 299 172 5 38 332 42 331 7.41e-57 187
Msa0303120 AT4G25980.1 35.030 334 196 4 5 332 8 326 7.52e-57 187
Msa0303120 AT4G21960.1 35.015 337 198 6 4 333 6 328 2.24e-56 186
Msa0303120 AT1G14540.1 35.583 326 188 8 13 332 6 315 2.31e-56 186
Msa0303120 AT1G44970.1 34.604 341 206 6 4 332 11 346 3.85e-56 186
Msa0303120 AT1G71695.1 33.968 315 185 9 28 332 38 339 4.53e-56 186
Msa0303120 AT4G08780.1 36.452 310 183 7 32 332 23 327 7.24e-56 185
Msa0303120 AT5G58390.1 34.921 315 185 5 26 332 14 316 9.88e-56 184
Msa0303120 AT2G35380.1 35.905 337 196 9 7 332 8 335 1.25e-55 184
Msa0303120 AT4G33420.1 36.634 303 175 4 33 332 37 325 1.09e-54 182
Msa0303120 AT4G30170.1 34.528 307 188 6 32 332 26 325 2.26e-54 181
Msa0303120 AT4G33420.2 36.634 303 175 4 33 332 84 372 3.40e-54 182
Msa0303120 AT4G37520.1 35.082 305 185 5 32 328 26 325 3.54e-54 181
Msa0303120 AT2G34060.1 35.783 313 186 7 28 329 35 343 2.64e-53 179
Msa0303120 AT4G16270.1 38.562 306 175 7 33 332 50 348 3.95e-53 178
Msa0303120 AT4G17690.1 35.350 314 186 7 27 333 20 323 2.39e-52 176
Msa0303120 AT1G77100.1 34.821 336 195 8 4 332 1 319 3.15e-52 175
Msa0303120 AT3G17070.1 33.444 302 191 4 33 328 38 335 4.14e-52 175
Msa0303120 AT4G37520.2 35.082 305 182 6 32 328 26 322 5.32e-52 175
Msa0303120 AT5G67400.1 32.923 325 205 5 12 328 6 325 6.59e-51 172
Msa0303120 AT3G49960.1 33.443 305 190 5 32 328 26 325 1.97e-50 171
Msa0303120 AT2G37130.1 32.353 306 195 5 32 332 29 327 2.45e-48 165
Msa0303120 AT5G47000.1 33.435 329 203 7 10 332 12 330 5.93e-48 164
Msa0303120 AT2G37130.2 32.450 302 192 5 36 332 2 296 1.56e-47 162
Msa0303120 AT4G37530.2 36.782 261 151 6 32 284 26 280 4.68e-47 160
Msa0303120 AT1G24110.1 34.146 328 190 10 20 332 6 322 2.53e-45 157
Msa0303120 AT3G17070.2 33.846 260 161 5 75 328 18 272 1.31e-42 149
Msa0303120 AT2G35380.2 36.145 249 145 6 93 332 4 247 7.76e-41 143
Msa0303120 AT5G40150.1 31.511 311 198 5 28 332 27 328 1.08e-40 145
Msa0303120 AT3G28200.1 30.744 309 198 5 30 332 18 316 3.65e-40 144
Msa0303120 AT2G24800.2 43.902 164 89 2 32 193 30 192 7.93e-39 138
Msa0303120 AT5G39580.2 40.404 198 112 3 38 230 30 226 1.85e-36 131
Msa0303120 AT4G25980.2 34.934 229 139 3 13 235 55 279 2.75e-35 130
Msa0303120 AT3G42570.1 34.653 101 63 2 98 195 49 149 1.55e-11 62.0

Find 77 sgRNAs with CRISPR-Local

Find 278 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTTGTCCTTTCTTTGTTCT+TGG 0.141769 2_3:-60269525 None:intergenic
TGCTCAATCCATGTTCAAAA+TGG 0.176494 2_3:+60269731 Msa0303120:CDS
ATCGATCAACAATTACTATT+TGG 0.229792 2_3:+60269645 Msa0303120:CDS
TCAGAGAATCATACTATAAA+AGG 0.256963 2_3:+60269595 Msa0303120:CDS
TTTGTCCTTTCTTTGTTCTT+GGG 0.285365 2_3:-60269524 None:intergenic
TCCTTTCTTCCTGTGAAAAC+TGG 0.305455 2_3:-60269176 None:intergenic
TGCCATTGCAACTTTGGCTT+TGG 0.331079 2_3:-60268305 None:intergenic
AGCTAGGGATGCTGCTAAAA+TGG 0.333172 2_3:+60269014 Msa0303120:CDS
TTAGATATGACAACACTCTT+AGG 0.336759 2_3:+60269296 Msa0303120:CDS
TGACAGGATCAAAACTGTTC+TGG 0.348274 2_3:+60268942 Msa0303120:CDS
TCAGCGCAGGAGACAATTCC+AGG 0.375749 2_3:-60268976 None:intergenic
GCTCAATCCATGTTCAAAAT+GGG 0.411312 2_3:+60269732 Msa0303120:CDS
CCTGCGCAATGAAGCTGTCC+TGG 0.413855 2_3:+60269620 Msa0303120:CDS
CTCTAGCATACTTTAAATCA+AGG 0.418727 2_3:+60269261 Msa0303120:CDS
GGCACCAAGTGAAGATTCAT+TGG 0.421423 2_3:+60268369 Msa0303120:CDS
CTGTATAATTACAATGGTAC+TGG 0.433726 2_3:+60269444 Msa0303120:CDS
TTGTCCTTTCTTTGTTCTTG+GGG 0.443827 2_3:-60269523 None:intergenic
GAGGATTTGTACTAATTGAC+AGG 0.450366 2_3:+60268926 Msa0303120:CDS
CGAAAAGTAGCATCCATGCT+TGG 0.456509 2_3:-60269477 None:intergenic
TGTCAACAGGCCGGTGCACC+AGG 0.465657 2_3:+60269149 Msa0303120:intron
TACTGCCAAGTTACTACGCT+TGG 0.479846 2_3:+60268409 Msa0303120:CDS
GAAAAGTAGCATCCATGCTT+GGG 0.480736 2_3:-60269476 None:intergenic
TAGTGATGCCATTGCAACTT+TGG 0.483722 2_3:-60268311 None:intergenic
GTAATTGTTGATCGATTCCC+AGG 0.485944 2_3:-60269638 None:intergenic
ACTGCAAAAGCTATTATTAG+TGG 0.486300 2_3:-60268248 None:intergenic
ATCACCGAGGAATTTGCTGC+TGG 0.488175 2_3:+60269684 Msa0303120:CDS
CAATGTGGCTACAATGTGTT+TGG 0.492341 2_3:-60269413 None:intergenic
GTAAACCAAGCGTAGTAACT+TGG 0.512999 2_3:-60268414 None:intergenic
CCAGGACAGCTTCATTGCGC+AGG 0.514985 2_3:-60269620 None:intergenic
TATACTCCATCTTGCAGCTA+GGG 0.522742 2_3:+60268999 Msa0303120:CDS
ATCACCATCCATCTCATGGC+AGG 0.525540 2_3:+60269235 Msa0303120:CDS
GTTCTGGAATCACGATGCCC+TGG 0.534270 2_3:+60268958 Msa0303120:CDS
CTCCAAAGCCAAAGTTGCAA+TGG 0.535232 2_3:+60268303 Msa0303120:CDS
TGTCCTTTCTTTGTTCTTGG+GGG 0.541386 2_3:-60269522 None:intergenic
ATATACTCCATCTTGCAGCT+AGG 0.543161 2_3:+60268998 Msa0303120:CDS
CAGCATCCCTAGCTGCAAGA+TGG 0.544061 2_3:-60269005 None:intergenic
GTATACCTAAACCCAGACTC+TGG 0.544857 2_3:+60269558 Msa0303120:CDS
GCACCAAGTGAAGATTCATT+GGG 0.550917 2_3:+60268370 Msa0303120:CDS
AACTGGATAACCTGGTGCAC+CGG 0.552419 2_3:-60269159 None:intergenic
CTGCGCAATGAAGCTGTCCT+GGG 0.555200 2_3:+60269621 Msa0303120:CDS
GATCCCAATGAATCTTCACT+TGG 0.555493 2_3:-60268373 None:intergenic
ATTGTAGCCACATTGTTGAC+AGG 0.555596 2_3:+60269421 Msa0303120:CDS
CTGCAAAAGCTATTATTAGT+GGG 0.556067 2_3:-60268247 None:intergenic
AATGGGTAGACTTATGTATG+TGG 0.565516 2_3:+60268220 None:intergenic
AATGAATCTTCACTTGGTGC+CGG 0.566211 2_3:-60268367 None:intergenic
GCAGTGTTGAGCTTGTGCCA+TGG 0.566470 2_3:+60268266 Msa0303120:CDS
GAAAGGACAAAGCGACCCAC+TGG 0.567433 2_3:+60269536 Msa0303120:CDS
CCTGTGAAAACTGGATAACC+TGG 0.572521 2_3:-60269167 None:intergenic
TGCCATCACCATCCATCTCA+TGG 0.573493 2_3:+60269231 Msa0303120:CDS
TCTAGCATACTTTAAATCAA+GGG 0.578417 2_3:+60269262 Msa0303120:CDS
GAAATCAAGGAGAGGTACGC+CGG 0.584932 2_3:+60269775 Msa0303120:CDS
ATACTTTAAATCAAGGGGAC+TGG 0.589178 2_3:+60269268 Msa0303120:CDS
GTACAAATCCTCCAAGCCCC+CGG 0.589926 2_3:-60268915 None:intergenic
GCGACGCAGAGGTGTATGTC+CGG 0.597008 2_3:+60268348 Msa0303120:CDS
GCATCAATACTGCTTGATGA+AGG 0.603718 2_3:+60268862 Msa0303120:CDS
ATGAGATGGATGGTGATGGC+AGG 0.611656 2_3:-60269229 None:intergenic
CTAGCATACTTTAAATCAAG+GGG 0.615884 2_3:+60269263 Msa0303120:CDS
AAATCCAGCAGCAAATTCCT+CGG 0.621559 2_3:-60269688 None:intergenic
AACACAGGAGCACACACACT+AGG 0.622191 2_3:+60269390 Msa0303120:intron
TGGAAACTCAGACCCAAGCA+TGG 0.631385 2_3:+60269464 Msa0303120:CDS
AAGATGGAGTATATCAGCGC+AGG 0.632332 2_3:-60268989 None:intergenic
AAAAGAGCACCACAGAACCG+GGG 0.634192 2_3:+60268898 Msa0303120:CDS
CAATGTATGCCGCGACGCAG+AGG 0.638012 2_3:+60268337 Msa0303120:CDS
TGCCATGAGATGGATGGTGA+TGG 0.640627 2_3:-60269233 None:intergenic
TAGAGATTCCTGCCATGAGA+TGG 0.641062 2_3:-60269243 None:intergenic
GACAGGCTGTATAATTACAA+TGG 0.641447 2_3:+60269438 Msa0303120:CDS
ACATACATTGACAAAACAGT+CGG 0.657112 2_3:-60268438 None:intergenic
AAAGAGCACCACAGAACCGG+GGG 0.661332 2_3:+60268899 Msa0303120:CDS
TTTAACAGGAAATCAAGGAG+AGG 0.672719 2_3:+60269767 Msa0303120:CDS
CAGCGCAGGAGACAATTCCA+GGG 0.677474 2_3:-60268975 None:intergenic
GATTCCTGCCATGAGATGGA+TGG 0.684323 2_3:-60269239 None:intergenic
TATTTGTGTATCGACAACTC+CGG 0.685062 2_3:-60269794 None:intergenic
CTGGGTTTAGGTATACCAGT+GGG 0.687353 2_3:-60269551 None:intergenic
TCTGGGTTTAGGTATACCAG+TGG 0.695699 2_3:-60269552 None:intergenic
TATACAGCCTGTCAACAATG+TGG 0.699068 2_3:-60269428 None:intergenic
GGACATACACCTCTGCGTCG+CGG 0.704072 2_3:-60268346 None:intergenic
TGACACTAAAGAGATCACCG+AGG 0.845599 2_3:+60269671 Msa0303120:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTATAAAATAAAATAAAAT+GGG - chr2_3:60268465-60268484 None:intergenic 0.0%
!! AATTATAAAATAAAATAAAA+TGG - chr2_3:60268466-60268485 None:intergenic 0.0%
!!! TTTTATTTTATTTTATAATT+TGG + chr2_3:60268466-60268485 Msa0303120:intron 0.0%
!! ATTATAAAATAAAATAAAAT+GGG - chr2_3:60268465-60268484 None:intergenic 0.0%
!! AATTATAAAATAAAATAAAA+TGG - chr2_3:60268466-60268485 None:intergenic 0.0%
!!! TTTTATTTTATTTTATAATT+TGG + chr2_3:60268466-60268485 Msa0303120:intron 0.0%
!! TTCATTTATAATGTTTAGAA+TGG - chr2_3:60268781-60268800 None:intergenic 15.0%
!! TTCATTTATAATGTTTAGAA+TGG - chr2_3:60268781-60268800 None:intergenic 15.0%
!! TAGCTTAAAAAGTTGAAAAA+TGG - chr2_3:60268515-60268534 None:intergenic 20.0%
!!! GAATATATTTTAGTTTCAGA+GGG - chr2_3:60268630-60268649 None:intergenic 20.0%
!!! TGAATATATTTTAGTTTCAG+AGG - chr2_3:60268631-60268650 None:intergenic 20.0%
!! ACTCTATATACTAAGTTAAA+TGG - chr2_3:60268721-60268740 None:intergenic 20.0%
!!! TTTAGAATGGTAAGTTTAAA+TGG - chr2_3:60268768-60268787 None:intergenic 20.0%
!!! TTGAGATAAGATTTTATTTG+CGG - chr2_3:60269084-60269103 None:intergenic 20.0%
!!! GGAAATATCAAAATTTTAAC+AGG + chr2_3:60269753-60269772 Msa0303120:CDS 20.0%
!!! AAAATTTTAACAGGAAATCA+AGG + chr2_3:60269762-60269781 Msa0303120:CDS 20.0%
!! TAGCTTAAAAAGTTGAAAAA+TGG - chr2_3:60268515-60268534 None:intergenic 20.0%
!!! GAATATATTTTAGTTTCAGA+GGG - chr2_3:60268630-60268649 None:intergenic 20.0%
!!! TGAATATATTTTAGTTTCAG+AGG - chr2_3:60268631-60268650 None:intergenic 20.0%
!! ACTCTATATACTAAGTTAAA+TGG - chr2_3:60268721-60268740 None:intergenic 20.0%
!!! TTTAGAATGGTAAGTTTAAA+TGG - chr2_3:60268768-60268787 None:intergenic 20.0%
!!! TTGAGATAAGATTTTATTTG+CGG - chr2_3:60269084-60269103 None:intergenic 20.0%
!!! GGAAATATCAAAATTTTAAC+AGG + chr2_3:60269753-60269772 Msa0303120:CDS 20.0%
!!! AAAATTTTAACAGGAAATCA+AGG + chr2_3:60269762-60269781 Msa0303120:CDS 20.0%
! GCAAATAAAATCTTATCTCA+AGG + chr2_3:60269083-60269102 Msa0303120:intron 25.0%
! ATAAAATCTTATCTCAAGGT+AGG + chr2_3:60269087-60269106 Msa0303120:intron 25.0%
! TAAAATCTTATCTCAAGGTA+GGG + chr2_3:60269088-60269107 Msa0303120:intron 25.0%
! GTTGACATTAATTCTCAAAT+CGG - chr2_3:60269136-60269155 None:intergenic 25.0%
! ATTTGAGAATTAATGTCAAC+AGG + chr2_3:60269136-60269155 Msa0303120:intron 25.0%
! TCTAGCATACTTTAAATCAA+GGG + chr2_3:60269262-60269281 Msa0303120:CDS 25.0%
!! TACCAACAATATGTTCTAAA+TGG + chr2_3:60269351-60269370 Msa0303120:intron 25.0%
!! ACCAACAATATGTTCTAAAT+GGG + chr2_3:60269352-60269371 Msa0303120:intron 25.0%
! TCAGAGAATCATACTATAAA+AGG + chr2_3:60269595-60269614 Msa0303120:CDS 25.0%
! ATCGATCAACAATTACTATT+TGG + chr2_3:60269645-60269664 Msa0303120:CDS 25.0%
! GCAAATAAAATCTTATCTCA+AGG + chr2_3:60269083-60269102 Msa0303120:intron 25.0%
! ATAAAATCTTATCTCAAGGT+AGG + chr2_3:60269087-60269106 Msa0303120:intron 25.0%
! TAAAATCTTATCTCAAGGTA+GGG + chr2_3:60269088-60269107 Msa0303120:intron 25.0%
! GTTGACATTAATTCTCAAAT+CGG - chr2_3:60269136-60269155 None:intergenic 25.0%
! ATTTGAGAATTAATGTCAAC+AGG + chr2_3:60269136-60269155 Msa0303120:intron 25.0%
! TCTAGCATACTTTAAATCAA+GGG + chr2_3:60269262-60269281 Msa0303120:CDS 25.0%
!! TACCAACAATATGTTCTAAA+TGG + chr2_3:60269351-60269370 Msa0303120:intron 25.0%
!! ACCAACAATATGTTCTAAAT+GGG + chr2_3:60269352-60269371 Msa0303120:intron 25.0%
! TCAGAGAATCATACTATAAA+AGG + chr2_3:60269595-60269614 Msa0303120:CDS 25.0%
! ATCGATCAACAATTACTATT+TGG + chr2_3:60269645-60269664 Msa0303120:CDS 25.0%
CTGCAAAAGCTATTATTAGT+GGG - chr2_3:60268250-60268269 None:intergenic 30.0%
ACTGCAAAAGCTATTATTAG+TGG - chr2_3:60268251-60268270 None:intergenic 30.0%
ACATACATTGACAAAACAGT+CGG - chr2_3:60268441-60268460 None:intergenic 30.0%
TAAGAAAGATACAAACTGTG+AGG + chr2_3:60268533-60268552 Msa0303120:intron 30.0%
ATAGGACTATGAACAACTAA+AGG + chr2_3:60268583-60268602 Msa0303120:intron 30.0%
CTTAGTATATAGAGTTCATG+AGG + chr2_3:60268726-60268745 Msa0303120:intron 30.0%
! GAAACAACGATTTAAGTTTC+AGG - chr2_3:60268824-60268843 None:intergenic 30.0%
! AAACTTAAATCGTTGTTTCG+TGG + chr2_3:60268825-60268844 Msa0303120:intron 30.0%
!! ATAAGATTTTATTTGCGGAG+GGG - chr2_3:60269079-60269098 None:intergenic 30.0%
!! GATAAGATTTTATTTGCGGA+GGG - chr2_3:60269080-60269099 None:intergenic 30.0%
!! AGATAAGATTTTATTTGCGG+AGG - chr2_3:60269081-60269100 None:intergenic 30.0%
AAAATCTTATCTCAAGGTAG+GGG + chr2_3:60269089-60269108 Msa0303120:intron 30.0%
CTCTAGCATACTTTAAATCA+AGG + chr2_3:60269261-60269280 Msa0303120:CDS 30.0%
CTAGCATACTTTAAATCAAG+GGG + chr2_3:60269263-60269282 Msa0303120:CDS 30.0%
TTAGATATGACAACACTCTT+AGG + chr2_3:60269296-60269315 Msa0303120:CDS 30.0%
! ACCCATTTAGAACATATTGT+TGG - chr2_3:60269356-60269375 None:intergenic 30.0%
CTGTATAATTACAATGGTAC+TGG + chr2_3:60269444-60269463 Msa0303120:CDS 30.0%
TTTGTCCTTTCTTTGTTCTT+GGG - chr2_3:60269527-60269546 None:intergenic 30.0%
! GATATTTCCCATTTTGAACA+TGG - chr2_3:60269742-60269761 None:intergenic 30.0%
CTGCAAAAGCTATTATTAGT+GGG - chr2_3:60268250-60268269 None:intergenic 30.0%
ACTGCAAAAGCTATTATTAG+TGG - chr2_3:60268251-60268270 None:intergenic 30.0%
ACATACATTGACAAAACAGT+CGG - chr2_3:60268441-60268460 None:intergenic 30.0%
TAAGAAAGATACAAACTGTG+AGG + chr2_3:60268533-60268552 Msa0303120:intron 30.0%
ATAGGACTATGAACAACTAA+AGG + chr2_3:60268583-60268602 Msa0303120:intron 30.0%
CTTAGTATATAGAGTTCATG+AGG + chr2_3:60268726-60268745 Msa0303120:intron 30.0%
! GAAACAACGATTTAAGTTTC+AGG - chr2_3:60268824-60268843 None:intergenic 30.0%
! AAACTTAAATCGTTGTTTCG+TGG + chr2_3:60268825-60268844 Msa0303120:intron 30.0%
!! ATAAGATTTTATTTGCGGAG+GGG - chr2_3:60269079-60269098 None:intergenic 30.0%
!! GATAAGATTTTATTTGCGGA+GGG - chr2_3:60269080-60269099 None:intergenic 30.0%
!! AGATAAGATTTTATTTGCGG+AGG - chr2_3:60269081-60269100 None:intergenic 30.0%
AAAATCTTATCTCAAGGTAG+GGG + chr2_3:60269089-60269108 Msa0303120:intron 30.0%
CTCTAGCATACTTTAAATCA+AGG + chr2_3:60269261-60269280 Msa0303120:CDS 30.0%
CTAGCATACTTTAAATCAAG+GGG + chr2_3:60269263-60269282 Msa0303120:CDS 30.0%
TTAGATATGACAACACTCTT+AGG + chr2_3:60269296-60269315 Msa0303120:CDS 30.0%
! ACCCATTTAGAACATATTGT+TGG - chr2_3:60269356-60269375 None:intergenic 30.0%
CTGTATAATTACAATGGTAC+TGG + chr2_3:60269444-60269463 Msa0303120:CDS 30.0%
TTTGTCCTTTCTTTGTTCTT+GGG - chr2_3:60269527-60269546 None:intergenic 30.0%
! GATATTTCCCATTTTGAACA+TGG - chr2_3:60269742-60269761 None:intergenic 30.0%
GATACAAACTGTGAGGTTAA+TGG + chr2_3:60268540-60268559 Msa0303120:intron 35.0%
! AATGGTTGAAGGGAACTTTT+AGG + chr2_3:60268558-60268577 Msa0303120:intron 35.0%
!! GAAGGGAACTTTTAGGTAAT+AGG + chr2_3:60268565-60268584 Msa0303120:intron 35.0%
ACTATGAACAACTAAAGGAC+AGG + chr2_3:60268588-60268607 Msa0303120:intron 35.0%
! GTTCATGAGGTTTAAAGCAT+AGG + chr2_3:60268739-60268758 Msa0303120:intron 35.0%
GAGGATTTGTACTAATTGAC+AGG + chr2_3:60268926-60268945 Msa0303120:CDS 35.0%
ATACTTTAAATCAAGGGGAC+TGG + chr2_3:60269268-60269287 Msa0303120:CDS 35.0%
TATGACAACACTCTTAGGTA+AGG + chr2_3:60269301-60269320 Msa0303120:intron 35.0%
TGCATGTTTCATATCAACAC+AGG + chr2_3:60269375-60269394 Msa0303120:intron 35.0%
GACAGGCTGTATAATTACAA+TGG + chr2_3:60269438-60269457 Msa0303120:CDS 35.0%
!! TACTTTTCGAGACACATTGA+GGG + chr2_3:60269491-60269510 Msa0303120:CDS 35.0%
TTGTCCTTTCTTTGTTCTTG+GGG - chr2_3:60269526-60269545 None:intergenic 35.0%
CTTTGTCCTTTCTTTGTTCT+TGG - chr2_3:60269528-60269547 None:intergenic 35.0%
! TGTAATCTTTTCCAGAGTCT+GGG - chr2_3:60269572-60269591 None:intergenic 35.0%
! ATGTAATCTTTTCCAGAGTC+TGG - chr2_3:60269573-60269592 None:intergenic 35.0%
! CTGCTGGATTTGAAGATTTT+AGG + chr2_3:60269700-60269719 Msa0303120:CDS 35.0%
TGCTCAATCCATGTTCAAAA+TGG + chr2_3:60269731-60269750 Msa0303120:CDS 35.0%
GCTCAATCCATGTTCAAAAT+GGG + chr2_3:60269732-60269751 Msa0303120:CDS 35.0%
TTTAACAGGAAATCAAGGAG+AGG + chr2_3:60269767-60269786 Msa0303120:CDS 35.0%
! TATTTGTGTATCGACAACTC+CGG - chr2_3:60269797-60269816 None:intergenic 35.0%
GATACAAACTGTGAGGTTAA+TGG + chr2_3:60268540-60268559 Msa0303120:intron 35.0%
! AATGGTTGAAGGGAACTTTT+AGG + chr2_3:60268558-60268577 Msa0303120:intron 35.0%
!! GAAGGGAACTTTTAGGTAAT+AGG + chr2_3:60268565-60268584 Msa0303120:intron 35.0%
ACTATGAACAACTAAAGGAC+AGG + chr2_3:60268588-60268607 Msa0303120:intron 35.0%
! GTTCATGAGGTTTAAAGCAT+AGG + chr2_3:60268739-60268758 Msa0303120:intron 35.0%
GAGGATTTGTACTAATTGAC+AGG + chr2_3:60268926-60268945 Msa0303120:CDS 35.0%
ATACTTTAAATCAAGGGGAC+TGG + chr2_3:60269268-60269287 Msa0303120:CDS 35.0%
TATGACAACACTCTTAGGTA+AGG + chr2_3:60269301-60269320 Msa0303120:intron 35.0%
TGCATGTTTCATATCAACAC+AGG + chr2_3:60269375-60269394 Msa0303120:intron 35.0%
GACAGGCTGTATAATTACAA+TGG + chr2_3:60269438-60269457 Msa0303120:CDS 35.0%
!! TACTTTTCGAGACACATTGA+GGG + chr2_3:60269491-60269510 Msa0303120:CDS 35.0%
TTGTCCTTTCTTTGTTCTTG+GGG - chr2_3:60269526-60269545 None:intergenic 35.0%
CTTTGTCCTTTCTTTGTTCT+TGG - chr2_3:60269528-60269547 None:intergenic 35.0%
! TGTAATCTTTTCCAGAGTCT+GGG - chr2_3:60269572-60269591 None:intergenic 35.0%
! ATGTAATCTTTTCCAGAGTC+TGG - chr2_3:60269573-60269592 None:intergenic 35.0%
! CTGCTGGATTTGAAGATTTT+AGG + chr2_3:60269700-60269719 Msa0303120:CDS 35.0%
TGCTCAATCCATGTTCAAAA+TGG + chr2_3:60269731-60269750 Msa0303120:CDS 35.0%
GCTCAATCCATGTTCAAAAT+GGG + chr2_3:60269732-60269751 Msa0303120:CDS 35.0%
TTTAACAGGAAATCAAGGAG+AGG + chr2_3:60269767-60269786 Msa0303120:CDS 35.0%
! TATTTGTGTATCGACAACTC+CGG - chr2_3:60269797-60269816 None:intergenic 35.0%
TAGTGATGCCATTGCAACTT+TGG - chr2_3:60268314-60268333 None:intergenic 40.0%
!! AATGAATCTTCACTTGGTGC+CGG - chr2_3:60268370-60268389 None:intergenic 40.0%
GCACCAAGTGAAGATTCATT+GGG + chr2_3:60268370-60268389 Msa0303120:CDS 40.0%
GATCCCAATGAATCTTCACT+TGG - chr2_3:60268376-60268395 None:intergenic 40.0%
GTAAACCAAGCGTAGTAACT+TGG - chr2_3:60268417-60268436 None:intergenic 40.0%
ACTGTGAGGTTAATGGTTGA+AGG + chr2_3:60268547-60268566 Msa0303120:intron 40.0%
CTGTGAGGTTAATGGTTGAA+GGG + chr2_3:60268548-60268567 Msa0303120:intron 40.0%
! AAATCGTTGTTTCGTGGCAT+AGG + chr2_3:60268831-60268850 Msa0303120:intron 40.0%
! AATCGTTGTTTCGTGGCATA+GGG + chr2_3:60268832-60268851 Msa0303120:intron 40.0%
GCATCAATACTGCTTGATGA+AGG + chr2_3:60268862-60268881 Msa0303120:CDS 40.0%
!!! GGTGCTCTTTTTTCTGGATT+TGG - chr2_3:60268889-60268908 None:intergenic 40.0%
!!! TTCTGTGGTGCTCTTTTTTC+TGG - chr2_3:60268895-60268914 None:intergenic 40.0%
!! AAAAAAGAGCACCACAGAAC+CGG + chr2_3:60268896-60268915 Msa0303120:CDS 40.0%
TGACAGGATCAAAACTGTTC+TGG + chr2_3:60268942-60268961 Msa0303120:CDS 40.0%
ATATACTCCATCTTGCAGCT+AGG + chr2_3:60268998-60269017 Msa0303120:CDS 40.0%
TATACTCCATCTTGCAGCTA+GGG + chr2_3:60268999-60269018 Msa0303120:CDS 40.0%
GAGAATTAATGTCAACAGGC+CGG + chr2_3:60269140-60269159 Msa0303120:intron 40.0%
! TCCAGTTTTCACAGGAAGAA+AGG + chr2_3:60269175-60269194 Msa0303120:CDS 40.0%
TCCTTTCTTCCTGTGAAAAC+TGG - chr2_3:60269179-60269198 None:intergenic 40.0%
! GTTTTCACAGGAAGAAAGGA+TGG + chr2_3:60269179-60269198 Msa0303120:CDS 40.0%
CAATGTGGCTACAATGTGTT+TGG - chr2_3:60269416-60269435 None:intergenic 40.0%
ATTGTAGCCACATTGTTGAC+AGG + chr2_3:60269421-60269440 Msa0303120:CDS 40.0%
TATACAGCCTGTCAACAATG+TGG - chr2_3:60269431-60269450 None:intergenic 40.0%
GAAAAGTAGCATCCATGCTT+GGG - chr2_3:60269479-60269498 None:intergenic 40.0%
!! CTACTTTTCGAGACACATTG+AGG + chr2_3:60269490-60269509 Msa0303120:CDS 40.0%
!! ACTTTTCGAGACACATTGAG+GGG + chr2_3:60269492-60269511 Msa0303120:CDS 40.0%
TGTCCTTTCTTTGTTCTTGG+GGG - chr2_3:60269525-60269544 None:intergenic 40.0%
! GTAATTGTTGATCGATTCCC+AGG - chr2_3:60269641-60269660 None:intergenic 40.0%
AAATCCAGCAGCAAATTCCT+CGG - chr2_3:60269691-60269710 None:intergenic 40.0%
TAGTGATGCCATTGCAACTT+TGG - chr2_3:60268314-60268333 None:intergenic 40.0%
!! AATGAATCTTCACTTGGTGC+CGG - chr2_3:60268370-60268389 None:intergenic 40.0%
GCACCAAGTGAAGATTCATT+GGG + chr2_3:60268370-60268389 Msa0303120:CDS 40.0%
GATCCCAATGAATCTTCACT+TGG - chr2_3:60268376-60268395 None:intergenic 40.0%
GTAAACCAAGCGTAGTAACT+TGG - chr2_3:60268417-60268436 None:intergenic 40.0%
ACTGTGAGGTTAATGGTTGA+AGG + chr2_3:60268547-60268566 Msa0303120:intron 40.0%
CTGTGAGGTTAATGGTTGAA+GGG + chr2_3:60268548-60268567 Msa0303120:intron 40.0%
! AAATCGTTGTTTCGTGGCAT+AGG + chr2_3:60268831-60268850 Msa0303120:intron 40.0%
! AATCGTTGTTTCGTGGCATA+GGG + chr2_3:60268832-60268851 Msa0303120:intron 40.0%
GCATCAATACTGCTTGATGA+AGG + chr2_3:60268862-60268881 Msa0303120:CDS 40.0%
!!! GGTGCTCTTTTTTCTGGATT+TGG - chr2_3:60268889-60268908 None:intergenic 40.0%
!!! TTCTGTGGTGCTCTTTTTTC+TGG - chr2_3:60268895-60268914 None:intergenic 40.0%
!! AAAAAAGAGCACCACAGAAC+CGG + chr2_3:60268896-60268915 Msa0303120:CDS 40.0%
TGACAGGATCAAAACTGTTC+TGG + chr2_3:60268942-60268961 Msa0303120:CDS 40.0%
ATATACTCCATCTTGCAGCT+AGG + chr2_3:60268998-60269017 Msa0303120:CDS 40.0%
TATACTCCATCTTGCAGCTA+GGG + chr2_3:60268999-60269018 Msa0303120:CDS 40.0%
GAGAATTAATGTCAACAGGC+CGG + chr2_3:60269140-60269159 Msa0303120:intron 40.0%
! TCCAGTTTTCACAGGAAGAA+AGG + chr2_3:60269175-60269194 Msa0303120:CDS 40.0%
TCCTTTCTTCCTGTGAAAAC+TGG - chr2_3:60269179-60269198 None:intergenic 40.0%
! GTTTTCACAGGAAGAAAGGA+TGG + chr2_3:60269179-60269198 Msa0303120:CDS 40.0%
CAATGTGGCTACAATGTGTT+TGG - chr2_3:60269416-60269435 None:intergenic 40.0%
ATTGTAGCCACATTGTTGAC+AGG + chr2_3:60269421-60269440 Msa0303120:CDS 40.0%
TATACAGCCTGTCAACAATG+TGG - chr2_3:60269431-60269450 None:intergenic 40.0%
GAAAAGTAGCATCCATGCTT+GGG - chr2_3:60269479-60269498 None:intergenic 40.0%
!! CTACTTTTCGAGACACATTG+AGG + chr2_3:60269490-60269509 Msa0303120:CDS 40.0%
!! ACTTTTCGAGACACATTGAG+GGG + chr2_3:60269492-60269511 Msa0303120:CDS 40.0%
TGTCCTTTCTTTGTTCTTGG+GGG - chr2_3:60269525-60269544 None:intergenic 40.0%
! GTAATTGTTGATCGATTCCC+AGG - chr2_3:60269641-60269660 None:intergenic 40.0%
AAATCCAGCAGCAAATTCCT+CGG - chr2_3:60269691-60269710 None:intergenic 40.0%
CTCCAAAGCCAAAGTTGCAA+TGG + chr2_3:60268303-60268322 Msa0303120:CDS 45.0%
! TGCCATTGCAACTTTGGCTT+TGG - chr2_3:60268308-60268327 None:intergenic 45.0%
GGCACCAAGTGAAGATTCAT+TGG + chr2_3:60268369-60268388 Msa0303120:CDS 45.0%
TACTGCCAAGTTACTACGCT+TGG + chr2_3:60268409-60268428 Msa0303120:CDS 45.0%
!! AAAAAGAGCACCACAGAACC+GGG + chr2_3:60268897-60268916 Msa0303120:CDS 45.0%
AAGATGGAGTATATCAGCGC+AGG - chr2_3:60268992-60269011 None:intergenic 45.0%
AGCTAGGGATGCTGCTAAAA+TGG + chr2_3:60269014-60269033 Msa0303120:CDS 45.0%
CCTGTGAAAACTGGATAACC+TGG - chr2_3:60269170-60269189 None:intergenic 45.0%
! CCAGGTTATCCAGTTTTCAC+AGG + chr2_3:60269167-60269186 Msa0303120:CDS 45.0%
TAGAGATTCCTGCCATGAGA+TGG - chr2_3:60269246-60269265 None:intergenic 45.0%
CGAAAAGTAGCATCCATGCT+TGG - chr2_3:60269480-60269499 None:intergenic 45.0%
TGTCCCCCAAGAACAAAGAA+AGG + chr2_3:60269519-60269538 Msa0303120:CDS 45.0%
CTGGGTTTAGGTATACCAGT+GGG - chr2_3:60269554-60269573 None:intergenic 45.0%
TCTGGGTTTAGGTATACCAG+TGG - chr2_3:60269555-60269574 None:intergenic 45.0%
GTATACCTAAACCCAGACTC+TGG + chr2_3:60269558-60269577 Msa0303120:CDS 45.0%
! CTTTTCCAGAGTCTGGGTTT+AGG - chr2_3:60269566-60269585 None:intergenic 45.0%
TGACACTAAAGAGATCACCG+AGG + chr2_3:60269671-60269690 Msa0303120:CDS 45.0%
CTCCAAAGCCAAAGTTGCAA+TGG + chr2_3:60268303-60268322 Msa0303120:CDS 45.0%
! TGCCATTGCAACTTTGGCTT+TGG - chr2_3:60268308-60268327 None:intergenic 45.0%
GGCACCAAGTGAAGATTCAT+TGG + chr2_3:60268369-60268388 Msa0303120:CDS 45.0%
TACTGCCAAGTTACTACGCT+TGG + chr2_3:60268409-60268428 Msa0303120:CDS 45.0%
!! AAAAAGAGCACCACAGAACC+GGG + chr2_3:60268897-60268916 Msa0303120:CDS 45.0%
AAGATGGAGTATATCAGCGC+AGG - chr2_3:60268992-60269011 None:intergenic 45.0%
AGCTAGGGATGCTGCTAAAA+TGG + chr2_3:60269014-60269033 Msa0303120:CDS 45.0%
CCTGTGAAAACTGGATAACC+TGG - chr2_3:60269170-60269189 None:intergenic 45.0%
! CCAGGTTATCCAGTTTTCAC+AGG + chr2_3:60269167-60269186 Msa0303120:CDS 45.0%
TAGAGATTCCTGCCATGAGA+TGG - chr2_3:60269246-60269265 None:intergenic 45.0%
CGAAAAGTAGCATCCATGCT+TGG - chr2_3:60269480-60269499 None:intergenic 45.0%
TGTCCCCCAAGAACAAAGAA+AGG + chr2_3:60269519-60269538 Msa0303120:CDS 45.0%
CTGGGTTTAGGTATACCAGT+GGG - chr2_3:60269554-60269573 None:intergenic 45.0%
TCTGGGTTTAGGTATACCAG+TGG - chr2_3:60269555-60269574 None:intergenic 45.0%
GTATACCTAAACCCAGACTC+TGG + chr2_3:60269558-60269577 Msa0303120:CDS 45.0%
! CTTTTCCAGAGTCTGGGTTT+AGG - chr2_3:60269566-60269585 None:intergenic 45.0%
TGACACTAAAGAGATCACCG+AGG + chr2_3:60269671-60269690 Msa0303120:CDS 45.0%
!! TTATAAAATAAAATAAAATG+GGG - chr2_3:60268464-60268483 None:intergenic 5.0%
!! TTATAAAATAAAATAAAATG+GGG - chr2_3:60268464-60268483 None:intergenic 5.0%
!! AAAAGAGCACCACAGAACCG+GGG + chr2_3:60268898-60268917 Msa0303120:CDS 50.0%
ATTTGCGGAGGGGATACTGA+AGG - chr2_3:60269069-60269088 None:intergenic 50.0%
AACTGGATAACCTGGTGCAC+CGG - chr2_3:60269162-60269181 None:intergenic 50.0%
!! ATGAGATGGATGGTGATGGC+AGG - chr2_3:60269232-60269251 None:intergenic 50.0%
TGCCATCACCATCCATCTCA+TGG + chr2_3:60269231-60269250 Msa0303120:CDS 50.0%
TGCCATGAGATGGATGGTGA+TGG - chr2_3:60269236-60269255 None:intergenic 50.0%
ATCACCATCCATCTCATGGC+AGG + chr2_3:60269235-60269254 Msa0303120:CDS 50.0%
GATTCCTGCCATGAGATGGA+TGG - chr2_3:60269242-60269261 None:intergenic 50.0%
! AACACAGGAGCACACACACT+AGG + chr2_3:60269390-60269409 Msa0303120:intron 50.0%
TGGAAACTCAGACCCAAGCA+TGG + chr2_3:60269464-60269483 Msa0303120:CDS 50.0%
!! ATCACCGAGGAATTTGCTGC+TGG + chr2_3:60269684-60269703 Msa0303120:CDS 50.0%
! GAAATCAAGGAGAGGTACGC+CGG + chr2_3:60269775-60269794 Msa0303120:CDS 50.0%
!! AAAAGAGCACCACAGAACCG+GGG + chr2_3:60268898-60268917 Msa0303120:CDS 50.0%
ATTTGCGGAGGGGATACTGA+AGG - chr2_3:60269069-60269088 None:intergenic 50.0%
AACTGGATAACCTGGTGCAC+CGG - chr2_3:60269162-60269181 None:intergenic 50.0%
!! ATGAGATGGATGGTGATGGC+AGG - chr2_3:60269232-60269251 None:intergenic 50.0%
TGCCATCACCATCCATCTCA+TGG + chr2_3:60269231-60269250 Msa0303120:CDS 50.0%
TGCCATGAGATGGATGGTGA+TGG - chr2_3:60269236-60269255 None:intergenic 50.0%
ATCACCATCCATCTCATGGC+AGG + chr2_3:60269235-60269254 Msa0303120:CDS 50.0%
GATTCCTGCCATGAGATGGA+TGG - chr2_3:60269242-60269261 None:intergenic 50.0%
! AACACAGGAGCACACACACT+AGG + chr2_3:60269390-60269409 Msa0303120:intron 50.0%
TGGAAACTCAGACCCAAGCA+TGG + chr2_3:60269464-60269483 Msa0303120:CDS 50.0%
!! ATCACCGAGGAATTTGCTGC+TGG + chr2_3:60269684-60269703 Msa0303120:CDS 50.0%
! GAAATCAAGGAGAGGTACGC+CGG + chr2_3:60269775-60269794 Msa0303120:CDS 50.0%
! GCAGTGTTGAGCTTGTGCCA+TGG + chr2_3:60268266-60268285 Msa0303120:CDS 55.0%
!! AAAGAGCACCACAGAACCGG+GGG + chr2_3:60268899-60268918 Msa0303120:CDS 55.0%
GTACAAATCCTCCAAGCCCC+CGG - chr2_3:60268918-60268937 None:intergenic 55.0%
!! GTTCTGGAATCACGATGCCC+TGG + chr2_3:60268958-60268977 Msa0303120:CDS 55.0%
CAGCGCAGGAGACAATTCCA+GGG - chr2_3:60268978-60268997 None:intergenic 55.0%
TCAGCGCAGGAGACAATTCC+AGG - chr2_3:60268979-60268998 None:intergenic 55.0%
CAGCATCCCTAGCTGCAAGA+TGG - chr2_3:60269008-60269027 None:intergenic 55.0%
GAAAGGACAAAGCGACCCAC+TGG + chr2_3:60269536-60269555 Msa0303120:CDS 55.0%
CTGCGCAATGAAGCTGTCCT+GGG + chr2_3:60269621-60269640 Msa0303120:CDS 55.0%
! GCAGTGTTGAGCTTGTGCCA+TGG + chr2_3:60268266-60268285 Msa0303120:CDS 55.0%
!! AAAGAGCACCACAGAACCGG+GGG + chr2_3:60268899-60268918 Msa0303120:CDS 55.0%
GTACAAATCCTCCAAGCCCC+CGG - chr2_3:60268918-60268937 None:intergenic 55.0%
!! GTTCTGGAATCACGATGCCC+TGG + chr2_3:60268958-60268977 Msa0303120:CDS 55.0%
CAGCGCAGGAGACAATTCCA+GGG - chr2_3:60268978-60268997 None:intergenic 55.0%
TCAGCGCAGGAGACAATTCC+AGG - chr2_3:60268979-60268998 None:intergenic 55.0%
CAGCATCCCTAGCTGCAAGA+TGG - chr2_3:60269008-60269027 None:intergenic 55.0%
GAAAGGACAAAGCGACCCAC+TGG + chr2_3:60269536-60269555 Msa0303120:CDS 55.0%
CTGCGCAATGAAGCTGTCCT+GGG + chr2_3:60269621-60269640 Msa0303120:CDS 55.0%
CAATGTATGCCGCGACGCAG+AGG + chr2_3:60268337-60268356 Msa0303120:CDS 60.0%
GGACATACACCTCTGCGTCG+CGG - chr2_3:60268349-60268368 None:intergenic 60.0%
! GCGACGCAGAGGTGTATGTC+CGG + chr2_3:60268348-60268367 Msa0303120:CDS 60.0%
CCAGGACAGCTTCATTGCGC+AGG - chr2_3:60269623-60269642 None:intergenic 60.0%
CCTGCGCAATGAAGCTGTCC+TGG + chr2_3:60269620-60269639 Msa0303120:CDS 60.0%
CAATGTATGCCGCGACGCAG+AGG + chr2_3:60268337-60268356 Msa0303120:CDS 60.0%
GGACATACACCTCTGCGTCG+CGG - chr2_3:60268349-60268368 None:intergenic 60.0%
! GCGACGCAGAGGTGTATGTC+CGG + chr2_3:60268348-60268367 Msa0303120:CDS 60.0%
CCAGGACAGCTTCATTGCGC+AGG - chr2_3:60269623-60269642 None:intergenic 60.0%
CCTGCGCAATGAAGCTGTCC+TGG + chr2_3:60269620-60269639 Msa0303120:CDS 60.0%
GAGCTGCTGCTGCTGCTCCA+TGG - chr2_3:60268286-60268305 None:intergenic 65.0%
TGTCAACAGGCCGGTGCACC+AGG + chr2_3:60269149-60269168 Msa0303120:intron 65.0%
GAGCTGCTGCTGCTGCTCCA+TGG - chr2_3:60268286-60268305 None:intergenic 65.0%
TGTCAACAGGCCGGTGCACC+AGG + chr2_3:60269149-60269168 Msa0303120:intron 65.0%
GCACCACAGAACCGGGGGCT+TGG + chr2_3:60268904-60268923 Msa0303120:CDS 70.0%
CCTCCAAGCCCCCGGTTCTG+TGG - chr2_3:60268910-60268929 None:intergenic 70.0%
CCACAGAACCGGGGGCTTGG+AGG + chr2_3:60268907-60268926 Msa0303120:CDS 70.0%
GCACCACAGAACCGGGGGCT+TGG + chr2_3:60268904-60268923 Msa0303120:CDS 70.0%
CCTCCAAGCCCCCGGTTCTG+TGG - chr2_3:60268910-60268929 None:intergenic 70.0%
CCACAGAACCGGGGGCTTGG+AGG + chr2_3:60268907-60268926 Msa0303120:CDS 70.0%
Chromosome Type Strat End Strand Name
chr2_3 gene 60268221 60269821 60268221 ID=Msa0303120;Name=Msa0303120
chr2_3 mRNA 60268221 60269821 60268221 ID=Msa0303120-mRNA-1;Parent=Msa0303120;Name=Msa0303120-mRNA-1;_AED=0.09;_eAED=0.09;_QI=0|0|0|1|1|1|4|0|333
chr2_3 exon 60268221 60268454 60268221 ID=Msa0303120-mRNA-1:exon:19598;Parent=Msa0303120-mRNA-1
chr2_3 exon 60268853 60269035 60268853 ID=Msa0303120-mRNA-1:exon:19599;Parent=Msa0303120-mRNA-1
chr2_3 exon 60269158 60269317 60269158 ID=Msa0303120-mRNA-1:exon:19600;Parent=Msa0303120-mRNA-1
chr2_3 exon 60269397 60269821 60269397 ID=Msa0303120-mRNA-1:exon:19601;Parent=Msa0303120-mRNA-1
chr2_3 CDS 60268221 60268454 60268221 ID=Msa0303120-mRNA-1:cds;Parent=Msa0303120-mRNA-1
chr2_3 CDS 60268853 60269035 60268853 ID=Msa0303120-mRNA-1:cds;Parent=Msa0303120-mRNA-1
chr2_3 CDS 60269158 60269317 60269158 ID=Msa0303120-mRNA-1:cds;Parent=Msa0303120-mRNA-1
chr2_3 CDS 60269397 60269821 60269397 ID=Msa0303120-mRNA-1:cds;Parent=Msa0303120-mRNA-1
Gene Sequence

>Msa0303120

ATGGGTAGACTTATGTATGTGGCTTTCCCACTAATAATAGCTTTTGCAGTGTTGAGCTTGTGCCATGGAGCAGCAGCAGCAGCTCCAAAGCCAAAGTTGCAATGGCATCACTATCACAATGTATGCCGCGACGCAGAGGTGTATGTCCGGCACCAAGTGAAGATTCATTGGGATCAAGACAAAAGCATTACTGCCAAGTTACTACGCTTGGTTTACACCGACTGTTTTGTCAATGGTTGTGATGCATCAATACTGCTTGATGAAGGACCAAATCCAGAAAAAAGAGCACCACAGAACCGGGGGCTTGGAGGATTTGTACTAATTGACAGGATCAAAACTGTTCTGGAATCACGATGCCCTGGAATTGTCTCCTGCGCTGATATACTCCATCTTGCAGCTAGGGATGCTGCTAAAATGGCCGGTGCACCAGGTTATCCAGTTTTCACAGGAAGAAAGGATGGCATGAAATCAGATGCTGCATCAGTAGACCTGCCATCACCATCCATCTCATGGCAGGAATCTCTAGCATACTTTAAATCAAGGGGACTGGACGTATTAGATATGACAACACTCTTAGGAGCACACACACTAGGCCAAACACATTGTAGCCACATTGTTGACAGGCTGTATAATTACAATGGTACTGGAAACTCAGACCCAAGCATGGATGCTACTTTTCGAGACACATTGAGGGGACTTTGTCCCCCAAGAACAAAGAAAGGACAAAGCGACCCACTGGTATACCTAAACCCAGACTCTGGAAAAGATTACATCTTCAGAGAATCATACTATAAAAGGATCCTGCGCAATGAAGCTGTCCTGGGAATCGATCAACAATTACTATTTGGTGATGACACTAAAGAGATCACCGAGGAATTTGCTGCTGGATTTGAAGATTTTAGGAGATCTTTTGCTCAATCCATGTTCAAAATGGGAAATATCAAAATTTTAACAGGAAATCAAGGAGAGGTACGCCGGAGTTGTCGATACACAAATAAGTGA
Protein sequence

>Msa0303120

MGRLMYVAFPLIIAFAVLSLCHGAAAAAPKPKLQWHHYHNVCRDAEVYVRHQVKIHWDQDKSITAKLLRLVYTDCFVNGCDASILLDEGPNPEKRAPQNRGLGGFVLIDRIKTVLESRCPGIVSCADILHLAARDAAKMAGAPGYPVFTGRKDGMKSDAASVDLPSPSISWQESLAYFKSRGLDVLDMTTLLGAHTLGQTHCSHIVDRLYNYNGTGNSDPSMDATFRDTLRGLCPPRTKKGQSDPLVYLNPDSGKDYIFRESYYKRILRNEAVLGIDQQLLFGDDTKEITEEFAAGFEDFRRSFAQSMFKMGNIKILTGNQGEVRRSCRYTNK*