AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1300610


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1300610 MtrunA17_Chr4g0065991 87.205 508 27 1 1 470 1 508 0.0 905
Msa1300610 MtrunA17_Chr4g0065981 82.283 508 52 1 1 470 168 675 0.0 877
Msa1300610 MtrunA17_Chr4g0065961 80.632 506 60 1 1 468 161 666 0.0 853
Msa1300610 MtrunA17_Chr4g0023331 79.075 411 48 1 98 470 5 415 0.0 665
Msa1300610 MtrunA17_Chr1g0205571 58.580 507 171 2 1 468 165 671 0.0 630
Msa1300610 MtrunA17_Chr1g0205541 47.879 495 211 4 1 455 171 658 1.72e-168 489
Msa1300610 MtrunA17_Chr3g0119641 45.110 501 229 7 2 456 213 713 1.10e-148 441
Msa1300610 MtrunA17_Chr3g0117081 27.696 473 294 8 25 455 270 736 1.82e-57 202
Msa1300610 MtrunA17_Chr5g0412801 28.632 475 287 10 25 455 242 708 1.55e-56 199
Msa1300610 MtrunA17_Chr4g0023321 82.474 97 17 0 1 97 166 262 7.42e-54 181
Msa1300610 MtrunA17_Chr8g0368011 27.302 315 178 8 5 276 255 561 7.05e-30 123
Msa1300610 MtrunA17_Chr8g0368021 38.583 127 76 2 339 463 37 163 7.02e-22 92.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1300610 AT1G31690.1 51.473 509 206 4 1 468 164 672 0.0 543
Msa1300610 AT1G31710.1 52.096 501 196 5 1 457 165 665 0.0 540
Msa1300610 AT1G31670.1 51.181 508 193 8 1 468 244 736 3.68e-175 509
Msa1300610 AT4G14940.1 46.185 498 217 5 1 455 160 649 1.16e-162 474
Msa1300610 AT4G12290.1 45.124 523 226 11 2 468 217 734 2.23e-153 454
Msa1300610 AT3G43670.1 44.400 500 232 8 2 455 175 674 1.36e-142 424
Msa1300610 AT1G62810.1 42.690 513 248 8 2 468 194 706 1.01e-141 423
Msa1300610 AT4G12290.2 43.913 460 197 11 2 405 217 671 3.24e-124 377
Msa1300610 AT4G12280.1 49.027 257 123 2 220 468 37 293 3.84e-85 264
Msa1300610 AT4G12270.1 41.870 246 115 8 2 223 219 460 6.00e-56 193
Msa1300610 AT2G42490.1 28.421 475 288 11 25 455 277 743 1.60e-55 197

Find 140 sgRNAs with CRISPR-Local

Find 325 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGAGATACTAATAGATTTA+AGG 0.185725 8_3:+62272690 Msa1300610:five_prime_UTR
GAATACTCTTTATCGGTTAA+AGG 0.216807 8_3:-62272500 None:intergenic
ATCAGGTATACTTGAAATTA+AGG 0.224441 8_3:+62276273 Msa1300610:CDS
TTCTTTGATGCTGGAGAGTT+TGG 0.224498 8_3:+62273628 Msa1300610:CDS
TGCGAAAAGCGCAAACTTAA+TGG 0.252056 8_3:-62272408 None:intergenic
CTTTCACTAATTATAATGTT+TGG 0.263537 8_3:+62276689 Msa1300610:CDS
GTTCAAAGAGAAAGAGTTAT+TGG 0.263546 8_3:+62276476 Msa1300610:CDS
GTGCTCAATAGTGGCATTAT+TGG 0.277998 8_3:-62276986 None:intergenic
AGAGGATGTTGAAAATTTAA+TGG 0.279937 8_3:-62272473 None:intergenic
TTTCTCCAAGAGATGTTAAA+TGG 0.287454 8_3:+62277065 Msa1300610:CDS
CTAGCAAGACTATGCTGTTT+TGG 0.289181 8_3:-62273103 None:intergenic
GAGGATGTTGAAAATTTAAT+GGG 0.303379 8_3:-62272472 None:intergenic
TACCTTGATCTTGATATTGA+TGG 0.305111 8_3:+62276397 Msa1300610:CDS
ACAATTGTTAATCCAGTAAT+AGG 0.306372 8_3:-62272968 None:intergenic
AAAGTAGCTTTCCACTATAT+TGG 0.311749 8_3:+62272557 Msa1300610:five_prime_UTR
TAAGCATAAGGATGAGATTA+AGG 0.314074 8_3:+62276306 Msa1300610:CDS
GAATAGAGACATTGTGAAAA+AGG 0.321976 8_3:+62276907 Msa1300610:CDS
ATAAAAGGAGGATATTTCTT+TGG 0.322288 8_3:-62272800 None:intergenic
GACAAGAGAATACTCTTTAT+CGG 0.336755 8_3:-62272507 None:intergenic
AATACTCTTTATCGGTTAAA+GGG 0.340965 8_3:-62272499 None:intergenic
AGATCAATGGCCACAGTGTT+AGG 0.341442 8_3:+62273152 Msa1300610:CDS
AGGAGTCTTACGGGTTCATT+AGG 0.348354 8_3:-62273823 None:intergenic
ATATATGTGAGGCCTATTAC+TGG 0.348869 8_3:+62272956 Msa1300610:CDS
AGTGGATGAGCTGGAATTGC+TGG 0.355513 8_3:-62276631 None:intergenic
ACATTCTCCATGGGATGGTT+TGG 0.358949 8_3:+62272872 Msa1300610:exon
TTAACAATTGTTGTTGATCT+TGG 0.359737 8_3:+62272980 Msa1300610:CDS
TTTCACTAATTATAATGTTT+GGG 0.361398 8_3:+62276690 Msa1300610:CDS
TGCTGAGAACACTGAATATC+AGG 0.368585 8_3:+62273054 Msa1300610:CDS
GATGCTGGAGAGTTTGGATT+TGG 0.377266 8_3:+62273634 Msa1300610:CDS
AATATAGTGGAAAGCTACTT+TGG 0.381857 8_3:-62272555 None:intergenic
CCAGGCCATTTAACATCTCT+TGG 0.400405 8_3:-62277070 None:intergenic
TGCTCAATAGTGGCATTATT+GGG 0.405334 8_3:-62276985 None:intergenic
TTTAAGACTTTCTTTGATGC+TGG 0.406544 8_3:+62273619 Msa1300610:CDS
TGTATACAGATAGCATTATC+AGG 0.410836 8_3:+62276256 Msa1300610:intron
TCAAAACAAAGCCCGCCGTT+TGG 0.411416 8_3:+62273079 Msa1300610:CDS
CTATTAGTATCTCATGGCTT+TGG 0.418126 8_3:-62272682 None:intergenic
TTCCTCTCAAAGAAATTAGT+TGG 0.418394 8_3:-62277025 None:intergenic
ATTGGGAAATCTTCTTGTGC+TGG 0.418903 8_3:-62276968 None:intergenic
CTCCTTACAAGCCGTAGTTT+CGG 0.419060 8_3:+62272445 Msa1300610:five_prime_UTR
GAGAAGACACATTAGCTGTT+TGG 0.422613 8_3:+62276773 Msa1300610:CDS
ATTGATGATAGCAATGATAA+AGG 0.423843 8_3:-62272657 None:intergenic
GTGAAAGCACCACGTATTTG+TGG 0.424101 8_3:-62276673 None:intergenic
TTTGGTGGACAATCACGATT+AGG 0.428602 8_3:-62273679 None:intergenic
TAACACTGTGGCCATTGATC+TGG 0.431893 8_3:-62273150 None:intergenic
AGCTGGTGTAATAATATCAT+TGG 0.432459 8_3:+62273492 Msa1300610:CDS
ATGTGGCGTCACACTGAAAC+GGG 0.435240 8_3:+62273796 Msa1300610:CDS
GTATCAATGAACTCGGCATT+TGG 0.435961 8_3:-62273697 None:intergenic
GACCGAAACTACGGCTTGTA+AGG 0.438829 8_3:-62272447 None:intergenic
AAAATTCATCAGATGGATCT+TGG 0.440768 8_3:-62273594 None:intergenic
ATGGATCTAGTTGGGCCAAT+TGG 0.441147 8_3:+62273443 Msa1300610:intron
TTTATCATTGCTATCATCAA+TGG 0.443953 8_3:+62272659 Msa1300610:five_prime_UTR
GGCAACAAACATTAAGCATA+AGG 0.444443 8_3:+62276294 Msa1300610:CDS
CAAGGTAGTAGATGTAGAAA+TGG 0.454103 8_3:-62276381 None:intergenic
AATTAATCAACTAGCTTAGC+GGG 0.459023 8_3:+62277109 Msa1300610:three_prime_UTR
CGAGGGATAGTTATAGCACT+TGG 0.462317 8_3:-62272629 None:intergenic
AAAAGATGCTATTCTCAAAT+GGG 0.468868 8_3:+62272595 Msa1300610:five_prime_UTR
CCAAGAGATGTTAAATGGCC+TGG 0.470595 8_3:+62277070 Msa1300610:CDS
GACAATGTTTACAAAGGGAA+TGG 0.472431 8_3:+62272731 Msa1300610:five_prime_UTR
GTTCTACATTCTCCATGGGA+TGG 0.478966 8_3:+62272867 Msa1300610:exon
ATATAGTGGAAAGCTACTTT+GGG 0.479124 8_3:-62272554 None:intergenic
ACAGCATTCTTCAAGGGGAT+TGG 0.482538 8_3:-62273745 None:intergenic
GTTTGTTCTACATTCTCCAT+GGG 0.484648 8_3:+62272863 Msa1300610:exon
CATGTGGCGTCACACTGAAA+CGG 0.488265 8_3:+62273795 Msa1300610:CDS
TTAACAAATGCAAGTTCACC+TGG 0.490301 8_3:-62276559 None:intergenic
ACTGCCGTTGGTAATGAAGT+TGG 0.492967 8_3:+62276595 Msa1300610:CDS
TCAAATCCAGTGCTCAATAG+TGG 0.493479 8_3:-62276995 None:intergenic
AACACAGACAGCATTCTTCA+AGG 0.494353 8_3:-62273752 None:intergenic
CTTTGGAAGTTCTATTGCAA+TGG 0.494691 8_3:-62272783 None:intergenic
TTGGGAAATCTTCTTGTGCT+GGG 0.497563 8_3:-62276967 None:intergenic
TCAGTTAAAAGTGGATGAGC+TGG 0.500223 8_3:-62276640 None:intergenic
TACCATCAATATCAAGATCA+AGG 0.501730 8_3:-62276399 None:intergenic
TCCTATGTGAAACTTCCAAT+TGG 0.506455 8_3:-62273458 None:intergenic
CTACTTTGGGATATTTGTGT+AGG 0.507960 8_3:-62272541 None:intergenic
TCTCTGACAATGTTTACAAA+GGG 0.510218 8_3:+62272726 Msa1300610:five_prime_UTR
TGTTTGTTCTACATTCTCCA+TGG 0.514594 8_3:+62272862 Msa1300610:exon
AGTCATCAACCACAAGGTCC+TGG 0.514830 8_3:+62273124 Msa1300610:CDS
TACTAATAGATTTAAGGTTG+AGG 0.524628 8_3:+62272696 Msa1300610:five_prime_UTR
GTCTCTGACAATGTTTACAA+AGG 0.525940 8_3:+62272725 Msa1300610:five_prime_UTR
TGGCCATTGATCTGGAAGCC+AGG 0.527286 8_3:-62273142 None:intergenic
TTAAATCTATTAGTATCTCA+TGG 0.527636 8_3:-62272688 None:intergenic
TTAAAGTAAAATTCATCAGA+TGG 0.531808 8_3:-62273601 None:intergenic
AAGCGCAAACTTAATGGTGG+TGG 0.532350 8_3:-62272402 None:intergenic
GGAAGATTTACATGGTACAT+TGG 0.533925 8_3:+62276327 Msa1300610:CDS
GTGTTCTCAGCAGTAGGCAC+AGG 0.534311 8_3:-62273043 None:intergenic
GGCCAACTAATTTCTTTGAG+AGG 0.535093 8_3:+62277023 Msa1300610:CDS
TAATGGGGTGACCGAAACTA+CGG 0.535836 8_3:-62272456 None:intergenic
GGTCCTGGCTTCCAGATCAA+TGG 0.536411 8_3:+62273139 Msa1300610:CDS
TCATCAGATGGATCTTGGTA+TGG 0.537205 8_3:-62273589 None:intergenic
GGTCATCTAGGCCAATATAG+TGG 0.537223 8_3:-62272568 None:intergenic
ATTGTGATGTGGCATGTAGT+TGG 0.538927 8_3:+62276932 Msa1300610:CDS
GTTCATCAACAGATAGTGTA+GGG 0.539320 8_3:-62272757 None:intergenic
ATCACAATTGGGCTAGCCCC+AGG 0.539636 8_3:+62276541 Msa1300610:CDS
TAATCATCTTCAGTTAAAAG+TGG 0.547068 8_3:-62276649 None:intergenic
TTTGTGCTTCTCTAGATCGT+AGG 0.550441 8_3:-62273521 None:intergenic
TGTTCATCAACAGATAGTGT+AGG 0.552994 8_3:-62272758 None:intergenic
ACACAGACAGCATTCTTCAA+GGG 0.554739 8_3:-62273751 None:intergenic
AAATTGTGGAGTATCATGAC+AGG 0.557556 8_3:+62273011 Msa1300610:CDS
TCTTGGTCTTATGAAAATTG+TGG 0.560842 8_3:+62272997 Msa1300610:CDS
TGAGCACTGGATTTGAGTTG+AGG 0.563016 8_3:+62277002 Msa1300610:CDS
TTGGTGTCAGCAAACAGCAT+TGG 0.563377 8_3:+62276346 Msa1300610:CDS
GTTTGGATTTGGTTTGTCAA+CGG 0.565358 8_3:+62273645 Msa1300610:CDS
ATAATGCCACTATTGAGCAC+TGG 0.575284 8_3:+62276989 Msa1300610:CDS
CAGCTAATGTGTCTTCTCCA+TGG 0.582688 8_3:-62276768 None:intergenic
CACAGACAGCATTCTTCAAG+GGG 0.590307 8_3:-62273750 None:intergenic
TCAATGAACTCGGCATTTGG+TGG 0.591393 8_3:-62273694 None:intergenic
TGCACTGAGGCAATAAAAGG+AGG 0.595126 8_3:-62272812 None:intergenic
ATCTGGAAGCCAGGACCTTG+TGG 0.595509 8_3:-62273133 None:intergenic
TATGTTATTATTCTCCCACA+TGG 0.595523 8_3:-62277209 None:intergenic
TTATCGGTTAAAGGGTCAAG+AGG 0.595698 8_3:-62272491 None:intergenic
AAATTAATCAACTAGCTTAG+CGG 0.597048 8_3:+62277108 Msa1300610:three_prime_UTR
CTATATGTTGATCATAGCCA+TGG 0.600693 8_3:+62276751 Msa1300610:CDS
AGTAGATGTAGAAATGGTCA+TGG 0.603707 8_3:-62276375 None:intergenic
AAGAGAGTAGAAGGACTGTG+AGG 0.608183 8_3:+62272900 Msa1300610:CDS
AAGACAGTAAGAATCACTGA+TGG 0.608281 8_3:+62276451 Msa1300610:CDS
TTTCGTAGAGTATTATACAA+AGG 0.609403 8_3:+62273544 Msa1300610:CDS
TAACAAATGCAAGTTCACCT+GGG 0.611982 8_3:-62276558 None:intergenic
GAGATTAAGGAAGATTTACA+TGG 0.612657 8_3:+62276319 Msa1300610:CDS
CTTAGCAGTTTGAGTCTCAG+TGG 0.614126 8_3:-62276500 None:intergenic
ATAGGATTTGATGTACGAGC+TGG 0.615078 8_3:+62273475 Msa1300610:CDS
ATTGCCTCAGTGCAAAAGAG+AGG 0.616506 8_3:+62272821 Msa1300610:five_prime_UTR
ACATACACACACTCAGCAGA+GGG 0.625268 8_3:+62273718 Msa1300610:CDS
TATTCAGTGTTCTCAGCAGT+AGG 0.635301 8_3:-62273049 None:intergenic
AGGATGTTGAAAATTTAATG+GGG 0.636928 8_3:-62272471 None:intergenic
AACAATATAATAGTATCATG+TGG 0.640039 8_3:+62273779 Msa1300610:CDS
CTCTTTCACAAATAACAATG+CGG 0.646241 8_3:-62277166 None:intergenic
TACATACACACACTCAGCAG+AGG 0.649899 8_3:+62273717 Msa1300610:CDS
ATATCCAACTTCATTACCAA+CGG 0.650239 8_3:-62276599 None:intergenic
GCCAATTGGAAGTTTCACAT+AGG 0.650338 8_3:+62273457 Msa1300610:CDS
GCAATGATAAAGGCTTTACG+AGG 0.651377 8_3:-62272647 None:intergenic
ACAGTGTGAATATATATGTG+AGG 0.665308 8_3:+62272945 Msa1300610:CDS
CTTGCTAGTCATCAACCACA+AGG 0.670137 8_3:+62273118 Msa1300610:CDS
AAACTACGGCTTGTAAGGAG+AGG 0.678045 8_3:-62272442 None:intergenic
GAGCTCAAGCTAGCTCACAA+TGG 0.683695 8_3:+62272376 Msa1300610:five_prime_UTR
AACAAATGCAAGTTCACCTG+GGG 0.686910 8_3:-62276557 None:intergenic
GAAAAGCGCAAACTTAATGG+TGG 0.687075 8_3:-62272405 None:intergenic
TGTGTATGTATCAATGAACT+CGG 0.691775 8_3:-62273704 None:intergenic
CAATGATAAAGGCTTTACGA+GGG 0.694292 8_3:-62272646 None:intergenic
AATTGTGGAGTATCATGACA+GGG 0.695605 8_3:+62273012 Msa1300610:CDS
GATGATTATCCACAAATACG+TGG 0.754321 8_3:+62276664 Msa1300610:CDS
ATGAACATTACCTAACACTG+TGG 0.776443 8_3:-62273162 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATATTATATATTTATTTA+TGG + chr8_3:62273424-62273443 Msa1300610:intron 0.0%
!!! TTAAATTTTAAAATAAAATT+CGG - chr8_3:62275340-62275359 None:intergenic 0.0%
!!! GTAAAAAAAAAATTTGTTTT+TGG + chr8_3:62274106-62274125 Msa1300610:intron 10.0%
!! ATTAATTAAAGGTTAAAATA+TGG - chr8_3:62274392-62274411 None:intergenic 10.0%
!! AAAAGAACTAAATTAATTAA+AGG - chr8_3:62274403-62274422 None:intergenic 10.0%
!! AACAATAATATAAAAAACAT+GGG - chr8_3:62274473-62274492 None:intergenic 10.0%
!! TAACAATAATATAAAAAACA+TGG - chr8_3:62274474-62274493 None:intergenic 10.0%
!! AAAAAATATGAAATTAATAG+TGG + chr8_3:62275128-62275147 Msa1300610:intron 10.0%
!!! AAACTCTTTAATTTAATATT+CGG + chr8_3:62275651-62275670 Msa1300610:intron 10.0%
!!! TTTAAAATAATAAATTTGTC+CGG + chr8_3:62275689-62275708 Msa1300610:intron 10.0%
!!! TAATAAGATAATAATTTTTC+GGG + chr8_3:62275755-62275774 Msa1300610:intron 10.0%
!!! TATTAATTTATGATTTTCTT+GGG - chr8_3:62275803-62275822 None:intergenic 10.0%
!!! TTATTAATTTATGATTTTCT+TGG - chr8_3:62275804-62275823 None:intergenic 10.0%
!! TCATATAAAAATATATACAT+TGG - chr8_3:62276217-62276236 None:intergenic 10.0%
!! ATGAATATATGCAAAAAAAA+AGG - chr8_3:62273373-62273392 None:intergenic 15.0%
!! ATTTAATTAAGGCTAAAATA+TGG + chr8_3:62274070-62274089 Msa1300610:intron 15.0%
!!! ACAAATTTTTTTTTTACACA+GGG - chr8_3:62274103-62274122 None:intergenic 15.0%
!!! AACAAATTTTTTTTTTACAC+AGG - chr8_3:62274104-62274123 None:intergenic 15.0%
!!! AAAAAACAAAAAATTTTGCA+GGG - chr8_3:62274300-62274319 None:intergenic 15.0%
!!! TAAAAAACAAAAAATTTTGC+AGG - chr8_3:62274299-62274318 None:intergenic 15.0%
!!! AAAAAACAAAATATTTTGCA+GGG - chr8_3:62274225-62274244 None:intergenic 15.0%
!!! TAAAAAACAAAATATTTTGC+AGG - chr8_3:62274226-62274245 None:intergenic 15.0%
!!! AAAAAACAAAAAATTTTGCA+GGG - chr8_3:62274300-62274319 None:intergenic 15.0%
!!! TAAAAAACAAAAAATTTTGC+AGG - chr8_3:62274299-62274318 None:intergenic 15.0%
!!! TAAAAAACAAAAAATTTTGC+AGG + chr8_3:62274299-62274318 Msa1300610:intron 15.0%
!!! AAAAAACAAAAAATTTTGCA+GGG + chr8_3:62274300-62274319 Msa1300610:intron 15.0%
!!! GTGTAAAAAAAATTTGTTTT+TGG - chr8_3:62274327-62274346 None:intergenic 15.0%
!!! AAAACAAATTTTTTTTACAC+AGG + chr8_3:62274327-62274346 Msa1300610:intron 15.0%
!!! AAACAAATTTTTTTTACACA+GGG + chr8_3:62274328-62274347 Msa1300610:intron 15.0%
!! AAATAAGAATAATTGACAAA+GGG - chr8_3:62274756-62274775 None:intergenic 15.0%
!! AAAATAAGAATAATTGACAA+AGG - chr8_3:62274757-62274776 None:intergenic 15.0%
!! ACTAATTAATGCTATATATT+TGG + chr8_3:62274787-62274806 Msa1300610:intron 15.0%
!!! TTAATAGTGGATTAAAATAA+AGG + chr8_3:62275141-62275160 Msa1300610:intron 15.0%
!!! GATTAAAATAAAGGTATAAT+AGG + chr8_3:62275150-62275169 Msa1300610:intron 15.0%
!! TCACAATTCATTATTAAAAA+GGG - chr8_3:62275621-62275640 None:intergenic 15.0%
!!! AGTTTTTCAATTTTTTACAT+TGG - chr8_3:62275727-62275746 None:intergenic 15.0%
!! TCTAAATTAATAAATTTCTC+CGG + chr8_3:62276088-62276107 Msa1300610:intron 15.0%
!!! ATGACCATTATTATTTTATA+TGG + chr8_3:62276233-62276252 Msa1300610:intron 15.0%
!! TACACCATATAAAATAATAA+TGG - chr8_3:62276240-62276259 None:intergenic 15.0%
!! TTTCACTAATTATAATGTTT+GGG + chr8_3:62276690-62276709 Msa1300610:CDS 15.0%
!! TTATAATAGAACTGAAAAAT+GGG + chr8_3:62276720-62276739 Msa1300610:CDS 15.0%
!!! ATTTAAGTAATCATACTTTT+TGG - chr8_3:62276800-62276819 None:intergenic 15.0%
!! GATTACTATACTAATTAATT+TGG + chr8_3:62276858-62276877 Msa1300610:intron 15.0%
!!! TTGATTAATTTTTTTACTTG+GGG - chr8_3:62277099-62277118 None:intergenic 15.0%
!!! GTTGATTAATTTTTTTACTT+GGG - chr8_3:62277100-62277119 None:intergenic 15.0%
!!! AGTTGATTAATTTTTTTACT+TGG - chr8_3:62277101-62277120 None:intergenic 15.0%
!! TTAAATCTATTAGTATCTCA+TGG - chr8_3:62272691-62272710 None:intergenic 20.0%
!! ATGAGATACTAATAGATTTA+AGG + chr8_3:62272690-62272709 Msa1300610:five_prime_UTR 20.0%
!! TATTTATTTATGGATCTAGT+TGG + chr8_3:62273434-62273453 Msa1300610:intron 20.0%
!! ATTTATTTATGGATCTAGTT+GGG + chr8_3:62273435-62273454 Msa1300610:intron 20.0%
!! TTAAAGTAAAATTCATCAGA+TGG - chr8_3:62273604-62273623 None:intergenic 20.0%
!! AACAATATAATAGTATCATG+TGG + chr8_3:62273779-62273798 Msa1300610:CDS 20.0%
!! ACTATGATAACATTATAGAT+TGG + chr8_3:62273999-62274018 Msa1300610:intron 20.0%
!! CTATGATAACATTATAGATT+GGG + chr8_3:62274000-62274019 Msa1300610:intron 20.0%
!! GTGTTTCATTCATTTAATTA+AGG + chr8_3:62274059-62274078 Msa1300610:intron 20.0%
!!! AACAAATTTTTTTTACACAG+GGG + chr8_3:62274329-62274348 Msa1300610:intron 20.0%
!!! AATTTAGTTCTTTTCAACTA+TGG + chr8_3:62274409-62274428 Msa1300610:intron 20.0%
!!! AAAAAACATGGGTTAAAATA+TGG - chr8_3:62274462-62274481 None:intergenic 20.0%
!!! TTTCTATTTAACTTTCGTTT+TGG + chr8_3:62274701-62274720 Msa1300610:intron 20.0%
!! AAAACAAAACAAACAAACTT+TGG - chr8_3:62274836-62274855 None:intergenic 20.0%
!!! AAACAAAATTTTGTTACCTA+TGG + chr8_3:62274890-62274909 Msa1300610:intron 20.0%
!!! TATGGAATTTTAACTTTTCA+TGG - chr8_3:62274924-62274943 None:intergenic 20.0%
!! AGTACTACTCATATTATTTA+TGG - chr8_3:62274942-62274961 None:intergenic 20.0%
!!! TTTTAGTATTTGACAGAAAA+AGG - chr8_3:62275373-62275392 None:intergenic 20.0%
!! CTTTAGACCAAAAAAAAAAA+GGG - chr8_3:62275403-62275422 None:intergenic 20.0%
!! ACTTTAGACCAAAAAAAAAA+AGG - chr8_3:62275404-62275423 None:intergenic 20.0%
!!! AAATTGTTTTTACAGGAAAA+GGG - chr8_3:62275594-62275613 None:intergenic 20.0%
!! CTCACAATTCATTATTAAAA+AGG - chr8_3:62275622-62275641 None:intergenic 20.0%
!! CTCTATAAATTAATAATGTC+AGG - chr8_3:62276115-62276134 None:intergenic 20.0%
!! CTTTCACTAATTATAATGTT+TGG + chr8_3:62276689-62276708 Msa1300610:CDS 20.0%
!!! CATTTTTCAGTTCTATTATA+AGG - chr8_3:62276721-62276740 None:intergenic 20.0%
!! CTTATAATAGAACTGAAAAA+TGG + chr8_3:62276719-62276738 Msa1300610:CDS 20.0%
!!! TTAATTTGGACCTTTTTTAA+TGG + chr8_3:62276872-62276891 Msa1300610:intron 20.0%
! AGGATGTTGAAAATTTAATG+GGG - chr8_3:62272474-62272493 None:intergenic 25.0%
! GAGGATGTTGAAAATTTAAT+GGG - chr8_3:62272475-62272494 None:intergenic 25.0%
! AGAGGATGTTGAAAATTTAA+TGG - chr8_3:62272476-62272495 None:intergenic 25.0%
!! AATACTCTTTATCGGTTAAA+GGG - chr8_3:62272502-62272521 None:intergenic 25.0%
!!! ATTTGTGTAGGACTATTTTT+TGG - chr8_3:62272532-62272551 None:intergenic 25.0%
! AAAAAGATGCTATTCTCAAA+TGG + chr8_3:62272594-62272613 Msa1300610:five_prime_UTR 25.0%
! AAAAGATGCTATTCTCAAAT+GGG + chr8_3:62272595-62272614 Msa1300610:five_prime_UTR 25.0%
!! ATTGATGATAGCAATGATAA+AGG - chr8_3:62272660-62272679 None:intergenic 25.0%
! TTTATCATTGCTATCATCAA+TGG + chr8_3:62272659-62272678 Msa1300610:five_prime_UTR 25.0%
!! TACTAATAGATTTAAGGTTG+AGG + chr8_3:62272696-62272715 Msa1300610:five_prime_UTR 25.0%
! ATAAAAGGAGGATATTTCTT+TGG - chr8_3:62272803-62272822 None:intergenic 25.0%
! ACAATTGTTAATCCAGTAAT+AGG - chr8_3:62272971-62272990 None:intergenic 25.0%
!! TTAACAATTGTTGTTGATCT+TGG + chr8_3:62272980-62272999 Msa1300610:CDS 25.0%
!! GTTCATTTCTTAGTACATTT+TGG + chr8_3:62273179-62273198 Msa1300610:intron 25.0%
!! TTTTGCATATATTCATGACT+TGG + chr8_3:62273377-62273396 Msa1300610:intron 25.0%
!! TTTCGTAGAGTATTATACAA+AGG + chr8_3:62273544-62273563 Msa1300610:CDS 25.0%
! TAAGTAATTAAGGAGTCTTA+CGG - chr8_3:62273836-62273855 None:intergenic 25.0%
! ATGCATAGAGTAAGTAATTA+AGG - chr8_3:62273846-62273865 None:intergenic 25.0%
! TCTGTCAAAATATCATTATG+TGG - chr8_3:62273922-62273941 None:intergenic 25.0%
!!! TGAACCCATTTTTTAGTTTT+TGG + chr8_3:62274198-62274217 Msa1300610:intron 25.0%
!!! TGTTTTTTAAAATAGTCCCT+AGG + chr8_3:62274145-62274164 Msa1300610:intron 25.0%
!!! GTTTTTTAAAATAGTCCCTA+GGG + chr8_3:62274269-62274288 Msa1300610:intron 25.0%
!!! GTTTTTTAAAATAGTCCCTA+GGG - chr8_3:62274269-62274288 None:intergenic 25.0%
!!! TGTTTTTTAAAATAGTCCCT+AGG - chr8_3:62274145-62274164 None:intergenic 25.0%
!!! AACTATGGTGTATGTTTTTT+GGG + chr8_3:62274424-62274443 Msa1300610:intron 25.0%
! TATAATTAATTGCCTTGTCT+AGG + chr8_3:62274502-62274521 Msa1300610:intron 25.0%
! AATAAATTTAGCAGATTTCG+AGG + chr8_3:62274569-62274588 Msa1300610:intron 25.0%
! ATAAATTTAGCAGATTTCGA+GGG + chr8_3:62274570-62274589 Msa1300610:intron 25.0%
! AAAAGACACTTAAAAAGGAA+CGG - chr8_3:62274665-62274684 None:intergenic 25.0%
!!! TCCTTTTTAAGTGTCTTTTT+AGG + chr8_3:62274666-62274685 Msa1300610:intron 25.0%
! ACCTAAAAAGACACTTAAAA+AGG - chr8_3:62274670-62274689 None:intergenic 25.0%
!!! ACTTTCGTTTTGGTATTTTA+AGG + chr8_3:62274711-62274730 Msa1300610:intron 25.0%
!!! CTTTCGTTTTGGTATTTTAA+GGG + chr8_3:62274712-62274731 Msa1300610:intron 25.0%
! GCAAAAAAATAGGAATTTGT+TGG + chr8_3:62275037-62275056 Msa1300610:intron 25.0%
! AAACGACACTTAAAAAGAAA+CGG + chr8_3:62275221-62275240 Msa1300610:intron 25.0%
!!! GTAACTTCCCTTTTTTTTTT+TGG + chr8_3:62275393-62275412 Msa1300610:intron 25.0%
! ACAAAGGAAATGTCAAATTT+GGG - chr8_3:62275497-62275516 None:intergenic 25.0%
! TGTATCTTTCAATGTTACAT+TGG + chr8_3:62275551-62275570 Msa1300610:intron 25.0%
!!! CAAATTGTTTTTACAGGAAA+AGG - chr8_3:62275595-62275614 None:intergenic 25.0%
!! CTTTTCCTGTAAAAACAATT+TGG + chr8_3:62275593-62275612 Msa1300610:intron 25.0%
! TAAATTAATAATGTCAGGAC+CGG - chr8_3:62276110-62276129 None:intergenic 25.0%
! ATCAGGTATACTTGAAATTA+AGG + chr8_3:62276273-62276292 Msa1300610:CDS 25.0%
! TAATCATCTTCAGTTAAAAG+TGG - chr8_3:62276652-62276671 None:intergenic 25.0%
! GCAAATGTTTCCATTAAAAA+AGG - chr8_3:62276885-62276904 None:intergenic 25.0%
!! TTTTTAATGGAAACATTTGC+AGG + chr8_3:62276885-62276904 Msa1300610:intron 25.0%
!! AAATTAATCAACTAGCTTAG+CGG + chr8_3:62277108-62277127 Msa1300610:three_prime_UTR 25.0%
!!! AATGTTTTGTTTATTCCATG+TGG + chr8_3:62277194-62277213 Msa1300610:three_prime_UTR 25.0%
!!! ATGTTTTGTTTATTCCATGT+GGG + chr8_3:62277195-62277214 Msa1300610:three_prime_UTR 25.0%
! GAATACTCTTTATCGGTTAA+AGG - chr8_3:62272503-62272522 None:intergenic 30.0%
GACAAGAGAATACTCTTTAT+CGG - chr8_3:62272510-62272529 None:intergenic 30.0%
! ATATAGTGGAAAGCTACTTT+GGG - chr8_3:62272557-62272576 None:intergenic 30.0%
! AATATAGTGGAAAGCTACTT+TGG - chr8_3:62272558-62272577 None:intergenic 30.0%
AAAGTAGCTTTCCACTATAT+TGG + chr8_3:62272557-62272576 Msa1300610:five_prime_UTR 30.0%
!! TGAGAATAGCATCTTTTTCA+GGG - chr8_3:62272592-62272611 None:intergenic 30.0%
! TTGAGAATAGCATCTTTTTC+AGG - chr8_3:62272593-62272612 None:intergenic 30.0%
TCTCTGACAATGTTTACAAA+GGG + chr8_3:62272726-62272745 Msa1300610:five_prime_UTR 30.0%
ACAGTGTGAATATATATGTG+AGG + chr8_3:62272945-62272964 Msa1300610:CDS 30.0%
!! TCTTGGTCTTATGAAAATTG+TGG + chr8_3:62272997-62273016 Msa1300610:CDS 30.0%
! CATTTCTTAGTACATTTTGG+TGG + chr8_3:62273182-62273201 Msa1300610:intron 30.0%
AGCTGGTGTAATAATATCAT+TGG + chr8_3:62273492-62273511 Msa1300610:CDS 30.0%
AAAATTCATCAGATGGATCT+TGG - chr8_3:62273597-62273616 None:intergenic 30.0%
! TTTAAGACTTTCTTTGATGC+TGG + chr8_3:62273619-62273638 Msa1300610:CDS 30.0%
TGTGTATGTATCAATGAACT+CGG - chr8_3:62273707-62273726 None:intergenic 30.0%
AAGTAATTAAGGAGTCTTAC+GGG - chr8_3:62273835-62273854 None:intergenic 30.0%
GGGACCAAAAACTAAAAAAT+GGG - chr8_3:62274205-62274224 None:intergenic 30.0%
AGGGACCAAAAACTAAAAAA+TGG - chr8_3:62274206-62274225 None:intergenic 30.0%
!!! CAACTATGGTGTATGTTTTT+TGG + chr8_3:62274423-62274442 Msa1300610:intron 30.0%
! AATTGTCTTTTACCTAGACA+AGG - chr8_3:62274517-62274536 None:intergenic 30.0%
TTTCATGGAACTATTACCAT+AGG - chr8_3:62274909-62274928 None:intergenic 30.0%
!! TACACTTTTTAAATGACACG+CGG - chr8_3:62275271-62275290 None:intergenic 30.0%
GTCGCGATTCATTATTAAAA+GGG - chr8_3:62275428-62275447 None:intergenic 30.0%
TGTCGCGATTCATTATTAAA+AGG - chr8_3:62275429-62275448 None:intergenic 30.0%
GACAAAGGAAATGTCAAATT+TGG - chr8_3:62275498-62275517 None:intergenic 30.0%
AACCAAAAAAGCAAAGTAGT+TGG - chr8_3:62275527-62275546 None:intergenic 30.0%
! GGAGATCCCTTTATAATTTT+CGG + chr8_3:62275776-62275795 Msa1300610:intron 30.0%
TTGGGACCGAAAATTATAAA+GGG - chr8_3:62275785-62275804 None:intergenic 30.0%
ACTATTGTGTTCATATGCAT+TGG - chr8_3:62275921-62275940 None:intergenic 30.0%
!! GACTAATTTGCCTTTTTGTT+TGG + chr8_3:62275995-62276014 Msa1300610:intron 30.0%
ACTGTACATACCAAACAAAA+AGG - chr8_3:62276008-62276027 None:intergenic 30.0%
GACAAAGGATATGTCAAATT+GGG - chr8_3:62276188-62276207 None:intergenic 30.0%
AGACAAAGGATATGTCAAAT+TGG - chr8_3:62276189-62276208 None:intergenic 30.0%
ATACATTGGAGTTTAGACAA+AGG - chr8_3:62276203-62276222 None:intergenic 30.0%
TGTATACAGATAGCATTATC+AGG + chr8_3:62276256-62276275 Msa1300610:intron 30.0%
TAAGCATAAGGATGAGATTA+AGG + chr8_3:62276306-62276325 Msa1300610:CDS 30.0%
GAGATTAAGGAAGATTTACA+TGG + chr8_3:62276319-62276338 Msa1300610:CDS 30.0%
TACCTTGATCTTGATATTGA+TGG + chr8_3:62276397-62276416 Msa1300610:CDS 30.0%
TACCATCAATATCAAGATCA+AGG - chr8_3:62276402-62276421 None:intergenic 30.0%
GTTCAAAGAGAAAGAGTTAT+TGG + chr8_3:62276476-62276495 Msa1300610:CDS 30.0%
TCAGATGCAAAAATCACAAT+TGG + chr8_3:62276529-62276548 Msa1300610:CDS 30.0%
CAGATGCAAAAATCACAATT+GGG + chr8_3:62276530-62276549 Msa1300610:CDS 30.0%
ATATCCAACTTCATTACCAA+CGG - chr8_3:62276602-62276621 None:intergenic 30.0%
GAATAGAGACATTGTGAAAA+AGG + chr8_3:62276907-62276926 Msa1300610:CDS 30.0%
TTCCTCTCAAAGAAATTAGT+TGG - chr8_3:62277028-62277047 None:intergenic 30.0%
TTTCTCCAAGAGATGTTAAA+TGG + chr8_3:62277065-62277084 Msa1300610:CDS 30.0%
! AATTAATCAACTAGCTTAGC+GGG + chr8_3:62277109-62277128 Msa1300610:three_prime_UTR 30.0%
CTCTTTCACAAATAACAATG+CGG - chr8_3:62277169-62277188 None:intergenic 30.0%
TATGTTATTATTCTCCCACA+TGG - chr8_3:62277212-62277231 None:intergenic 30.0%
!! CTACTTTGGGATATTTGTGT+AGG - chr8_3:62272544-62272563 None:intergenic 35.0%
CAATGATAAAGGCTTTACGA+GGG - chr8_3:62272649-62272668 None:intergenic 35.0%
CTATTAGTATCTCATGGCTT+TGG - chr8_3:62272685-62272704 None:intergenic 35.0%
GTCTCTGACAATGTTTACAA+AGG + chr8_3:62272725-62272744 Msa1300610:five_prime_UTR 35.0%
GACAATGTTTACAAAGGGAA+TGG + chr8_3:62272731-62272750 Msa1300610:five_prime_UTR 35.0%
GTTCATCAACAGATAGTGTA+GGG - chr8_3:62272760-62272779 None:intergenic 35.0%
TGTTCATCAACAGATAGTGT+AGG - chr8_3:62272761-62272780 None:intergenic 35.0%
! CTTTGGAAGTTCTATTGCAA+TGG - chr8_3:62272786-62272805 None:intergenic 35.0%
! TTTTGCACTGAGGCAATAAA+AGG - chr8_3:62272818-62272837 None:intergenic 35.0%
TGTTTGTTCTACATTCTCCA+TGG + chr8_3:62272862-62272881 Msa1300610:exon 35.0%
GTTTGTTCTACATTCTCCAT+GGG + chr8_3:62272863-62272882 Msa1300610:exon 35.0%
TTGGAGAAAAAGAGAGTAGA+AGG + chr8_3:62272891-62272910 Msa1300610:CDS 35.0%
ATATATGTGAGGCCTATTAC+TGG + chr8_3:62272956-62272975 Msa1300610:CDS 35.0%
! AAATTGTGGAGTATCATGAC+AGG + chr8_3:62273011-62273030 Msa1300610:CDS 35.0%
! AATTGTGGAGTATCATGACA+GGG + chr8_3:62273012-62273031 Msa1300610:CDS 35.0%
ATGAACATTACCTAACACTG+TGG - chr8_3:62273165-62273184 None:intergenic 35.0%
TCCTATGTGAAACTTCCAAT+TGG - chr8_3:62273461-62273480 None:intergenic 35.0%
!! GTTTGGATTTGGTTTGTCAA+CGG + chr8_3:62273645-62273664 Msa1300610:CDS 35.0%
CCTCACTATCAAGTTTACTT+CGG - chr8_3:62273960-62273979 None:intergenic 35.0%
ATGAATGAAACACATACCGA+CGG - chr8_3:62274052-62274071 None:intergenic 35.0%
CAAAACAAGGCATATTTGCA+GGG + chr8_3:62274359-62274378 Msa1300610:intron 35.0%
! ACATGGGTTAAAATATGGAG+AGG - chr8_3:62274457-62274476 None:intergenic 35.0%
GATAAAGCGCGCAAAAAAAT+AGG + chr8_3:62275027-62275046 Msa1300610:intron 35.0%
GACACTTAAAAAGAAACGGA+GGG + chr8_3:62275225-62275244 Msa1300610:intron 35.0%
AGTAGTTGGAGTTTAGACAA+AGG - chr8_3:62275513-62275532 None:intergenic 35.0%
!!! CTCCAACTACTTTGCTTTTT+TGG + chr8_3:62275522-62275541 Msa1300610:intron 35.0%
!!! GGGAACCAAATTGTTTTTAC+AGG - chr8_3:62275601-62275620 None:intergenic 35.0%
!!! TTTTTTACATTGGCCCAAGT+CGG - chr8_3:62275717-62275736 None:intergenic 35.0%
CTTGGGACCGAAAATTATAA+AGG - chr8_3:62275786-62275805 None:intergenic 35.0%
CTAATTTACGTTGAGTCTCA+AGG + chr8_3:62275943-62275962 Msa1300610:intron 35.0%
GGCAACAAACATTAAGCATA+AGG + chr8_3:62276294-62276313 Msa1300610:CDS 35.0%
GGAAGATTTACATGGTACAT+TGG + chr8_3:62276327-62276346 Msa1300610:CDS 35.0%
AGTAGATGTAGAAATGGTCA+TGG - chr8_3:62276378-62276397 None:intergenic 35.0%
CAAGGTAGTAGATGTAGAAA+TGG - chr8_3:62276384-62276403 None:intergenic 35.0%
AAGACAGTAAGAATCACTGA+TGG + chr8_3:62276451-62276470 Msa1300610:CDS 35.0%
TAACAAATGCAAGTTCACCT+GGG - chr8_3:62276561-62276580 None:intergenic 35.0%
TTAACAAATGCAAGTTCACC+TGG - chr8_3:62276562-62276581 None:intergenic 35.0%
GATGATTATCCACAAATACG+TGG + chr8_3:62276664-62276683 Msa1300610:CDS 35.0%
AATAGAACTGAAAAATGGGC+TGG + chr8_3:62276724-62276743 Msa1300610:CDS 35.0%
CTATATGTTGATCATAGCCA+TGG + chr8_3:62276751-62276770 Msa1300610:CDS 35.0%
TGAAAAAGGACATTGTGATG+TGG + chr8_3:62276921-62276940 Msa1300610:CDS 35.0%
TGCTCAATAGTGGCATTATT+GGG - chr8_3:62276988-62277007 None:intergenic 35.0%
!!! GGAGAAAGTGTTTTAAGAAC+AGG - chr8_3:62277052-62277071 None:intergenic 35.0%
! GAAAAGCGCAAACTTAATGG+TGG - chr8_3:62272408-62272427 None:intergenic 40.0%
! TGCGAAAAGCGCAAACTTAA+TGG - chr8_3:62272411-62272430 None:intergenic 40.0%
! TTATCGGTTAAAGGGTCAAG+AGG - chr8_3:62272494-62272513 None:intergenic 40.0%
!!! CATCTTTTTCAGGGTCATCT+AGG - chr8_3:62272583-62272602 None:intergenic 40.0%
GCAATGATAAAGGCTTTACG+AGG - chr8_3:62272650-62272669 None:intergenic 40.0%
! TTTTTCTCCAAACCATCCCA+TGG - chr8_3:62272882-62272901 None:intergenic 40.0%
TATTCAGTGTTCTCAGCAGT+AGG - chr8_3:62273052-62273071 None:intergenic 40.0%
TGCTGAGAACACTGAATATC+AGG + chr8_3:62273054-62273073 Msa1300610:CDS 40.0%
!!! CTATGCTGTTTTGGTCCAAA+CGG - chr8_3:62273097-62273116 None:intergenic 40.0%
!! CTAGCAAGACTATGCTGTTT+TGG - chr8_3:62273106-62273125 None:intergenic 40.0%
GCCAATTGGAAGTTTCACAT+AGG + chr8_3:62273457-62273476 Msa1300610:CDS 40.0%
ATAGGATTTGATGTACGAGC+TGG + chr8_3:62273475-62273494 Msa1300610:CDS 40.0%
TTTGTGCTTCTCTAGATCGT+AGG - chr8_3:62273524-62273543 None:intergenic 40.0%
TCATCAGATGGATCTTGGTA+TGG - chr8_3:62273592-62273611 None:intergenic 40.0%
TTCTTTGATGCTGGAGAGTT+TGG + chr8_3:62273628-62273647 Msa1300610:CDS 40.0%
! TTTGGTGGACAATCACGATT+AGG - chr8_3:62273682-62273701 None:intergenic 40.0%
GTATCAATGAACTCGGCATT+TGG - chr8_3:62273700-62273719 None:intergenic 40.0%
ACACAGACAGCATTCTTCAA+GGG - chr8_3:62273754-62273773 None:intergenic 40.0%
AACACAGACAGCATTCTTCA+AGG - chr8_3:62273755-62273774 None:intergenic 40.0%
!! CCGAAGTAAACTTGATAGTG+AGG + chr8_3:62273957-62273976 Msa1300610:intron 40.0%
TGTGCCACGTATGCAAAAAT+GGG - chr8_3:62274171-62274190 None:intergenic 40.0%
ATGTGCCACGTATGCAAAAA+TGG - chr8_3:62274172-62274191 None:intergenic 40.0%
!!! CCTGCAAATATGCCTTGTTT+TGG - chr8_3:62274361-62274380 None:intergenic 40.0%
CCAAAACAAGGCATATTTGC+AGG + chr8_3:62274358-62274377 Msa1300610:intron 40.0%
GACACTTAAAAAGGAACGGA+GGG - chr8_3:62274661-62274680 None:intergenic 40.0%
AGACACTTAAAAAGGAACGG+AGG - chr8_3:62274662-62274681 None:intergenic 40.0%
CGACACTTAAAAAGAAACGG+AGG + chr8_3:62275224-62275243 Msa1300610:intron 40.0%
ACTTAAAAAGAAACGGAGGG+AGG + chr8_3:62275228-62275247 Msa1300610:intron 40.0%
CTTAAAAAGAAACGGAGGGA+GGG + chr8_3:62275229-62275248 Msa1300610:intron 40.0%
CAGACCAAGAAAAAAGCAAG+CGG + chr8_3:62275471-62275490 Msa1300610:intron 40.0%
! TTTTTACATTGGCCCAAGTC+GGG - chr8_3:62275716-62275735 None:intergenic 40.0%
AAATTGGGCTGCATATGTCT+TGG - chr8_3:62276173-62276192 None:intergenic 40.0%
AACAAATGCAAGTTCACCTG+GGG - chr8_3:62276560-62276579 None:intergenic 40.0%
!!! CCAACGGCAGTTTTTTTGTT+TGG - chr8_3:62276586-62276605 None:intergenic 40.0%
CCAAACAAAAAAACTGCCGT+TGG + chr8_3:62276583-62276602 Msa1300610:CDS 40.0%
TCAGTTAAAAGTGGATGAGC+TGG - chr8_3:62276643-62276662 None:intergenic 40.0%
GAGAAGACACATTAGCTGTT+TGG + chr8_3:62276773-62276792 Msa1300610:CDS 40.0%
ATTGTGATGTGGCATGTAGT+TGG + chr8_3:62276932-62276951 Msa1300610:CDS 40.0%
TTGGGAAATCTTCTTGTGCT+GGG - chr8_3:62276970-62276989 None:intergenic 40.0%
ATTGGGAAATCTTCTTGTGC+TGG - chr8_3:62276971-62276990 None:intergenic 40.0%
GTGCTCAATAGTGGCATTAT+TGG - chr8_3:62276989-62277008 None:intergenic 40.0%
ATAATGCCACTATTGAGCAC+TGG + chr8_3:62276989-62277008 Msa1300610:CDS 40.0%
TCAAATCCAGTGCTCAATAG+TGG - chr8_3:62276998-62277017 None:intergenic 40.0%
GGCCAACTAATTTCTTTGAG+AGG + chr8_3:62277023-62277042 Msa1300610:CDS 40.0%
!!! TTTTTTTACTTGGGGCAACC+AGG - chr8_3:62277091-62277110 None:intergenic 40.0%
AAGCGCAAACTTAATGGTGG+TGG - chr8_3:62272405-62272424 None:intergenic 45.0%
AAACTACGGCTTGTAAGGAG+AGG - chr8_3:62272445-62272464 None:intergenic 45.0%
CTCCTTACAAGCCGTAGTTT+CGG + chr8_3:62272445-62272464 Msa1300610:five_prime_UTR 45.0%
TAATGGGGTGACCGAAACTA+CGG - chr8_3:62272459-62272478 None:intergenic 45.0%
GGTCATCTAGGCCAATATAG+TGG - chr8_3:62272571-62272590 None:intergenic 45.0%
CGAGGGATAGTTATAGCACT+TGG - chr8_3:62272632-62272651 None:intergenic 45.0%
TGCACTGAGGCAATAAAAGG+AGG - chr8_3:62272815-62272834 None:intergenic 45.0%
ATTGCCTCAGTGCAAAAGAG+AGG + chr8_3:62272821-62272840 Msa1300610:five_prime_UTR 45.0%
! CAAACCTCTCTTTTGCACTG+AGG - chr8_3:62272828-62272847 None:intergenic 45.0%
GTTCTACATTCTCCATGGGA+TGG + chr8_3:62272867-62272886 Msa1300610:exon 45.0%
ACATTCTCCATGGGATGGTT+TGG + chr8_3:62272872-62272891 Msa1300610:exon 45.0%
AAGAGAGTAGAAGGACTGTG+AGG + chr8_3:62272900-62272919 Msa1300610:CDS 45.0%
CTTGCTAGTCATCAACCACA+AGG + chr8_3:62273118-62273137 Msa1300610:CDS 45.0%
TAACACTGTGGCCATTGATC+TGG - chr8_3:62273153-62273172 None:intergenic 45.0%
AGATCAATGGCCACAGTGTT+AGG + chr8_3:62273152-62273171 Msa1300610:CDS 45.0%
ATGGATCTAGTTGGGCCAAT+TGG + chr8_3:62273443-62273462 Msa1300610:intron 45.0%
GATGCTGGAGAGTTTGGATT+TGG + chr8_3:62273634-62273653 Msa1300610:CDS 45.0%
TCAATGAACTCGGCATTTGG+TGG - chr8_3:62273697-62273716 None:intergenic 45.0%
TACATACACACACTCAGCAG+AGG + chr8_3:62273717-62273736 Msa1300610:CDS 45.0%
ACATACACACACTCAGCAGA+GGG + chr8_3:62273718-62273737 Msa1300610:CDS 45.0%
ACAGCATTCTTCAAGGGGAT+TGG - chr8_3:62273748-62273767 None:intergenic 45.0%
CACAGACAGCATTCTTCAAG+GGG - chr8_3:62273753-62273772 None:intergenic 45.0%
AGGAGTCTTACGGGTTCATT+AGG - chr8_3:62273826-62273845 None:intergenic 45.0%
! AGTGAGGAGTGTAGTTACTG+TGG + chr8_3:62273973-62273992 Msa1300610:intron 45.0%
! GTGAGGAGTGTAGTTACTGT+GGG + chr8_3:62273974-62273993 Msa1300610:intron 45.0%
GATTGGGAGTTCAAAGCAAG+TGG + chr8_3:62274016-62274035 Msa1300610:intron 45.0%
CGTATGCAAAAATGGGGTCA+GGG - chr8_3:62274164-62274183 None:intergenic 45.0%
ACGTATGCAAAAATGGGGTC+AGG - chr8_3:62274165-62274184 None:intergenic 45.0%
!! TGACCCCATTTTTGCATACG+TGG + chr8_3:62274164-62274183 Msa1300610:intron 45.0%
GTGCCACGTATGCAAAAATG+GGG - chr8_3:62274170-62274189 None:intergenic 45.0%
CAGGGGCTAAAACCAAAACA+AGG + chr8_3:62274346-62274365 Msa1300610:intron 45.0%
!! TAGCAGATTTCGAGGGTACT+TGG + chr8_3:62274577-62274596 Msa1300610:intron 45.0%
! GAACGGAGGGAGTAGTTTTT+AGG - chr8_3:62274648-62274667 None:intergenic 45.0%
CGCTGCAACGTAATTCTAAG+AGG + chr8_3:62275968-62275987 Msa1300610:intron 45.0%
!! TTGGTGTCAGCAAACAGCAT+TGG + chr8_3:62276346-62276365 Msa1300610:CDS 45.0%
CTTAGCAGTTTGAGTCTCAG+TGG - chr8_3:62276503-62276522 None:intergenic 45.0%
!! ACTGCCGTTGGTAATGAAGT+TGG + chr8_3:62276595-62276614 Msa1300610:CDS 45.0%
!! GTGAAAGCACCACGTATTTG+TGG - chr8_3:62276676-62276695 None:intergenic 45.0%
!! AGAACTGAAAAATGGGCTGG+TGG + chr8_3:62276727-62276746 Msa1300610:CDS 45.0%
CAGCTAATGTGTCTTCTCCA+TGG - chr8_3:62276771-62276790 None:intergenic 45.0%
!! TGAGCACTGGATTTGAGTTG+AGG + chr8_3:62277002-62277021 Msa1300610:CDS 45.0%
CCAGGCCATTTAACATCTCT+TGG - chr8_3:62277073-62277092 None:intergenic 45.0%
CCAAGAGATGTTAAATGGCC+TGG + chr8_3:62277070-62277089 Msa1300610:CDS 45.0%
!!! AAATATTTTGTTTTTTAAAA+AGG + chr8_3:62274229-62274248 Msa1300610:intron 5.0%
!!! ATAATAAGATAATAATTTTT+CGG + chr8_3:62275754-62275773 Msa1300610:intron 5.0%
GAGCTCAAGCTAGCTCACAA+TGG + chr8_3:62272376-62272395 Msa1300610:five_prime_UTR 50.0%
GACCGAAACTACGGCTTGTA+AGG - chr8_3:62272450-62272469 None:intergenic 50.0%
TCAAAACAAAGCCCGCCGTT+TGG + chr8_3:62273079-62273098 Msa1300610:CDS 50.0%
!!! TGCTGTTTTGGTCCAAACGG+CGG - chr8_3:62273094-62273113 None:intergenic 50.0%
AGTCATCAACCACAAGGTCC+TGG + chr8_3:62273124-62273143 Msa1300610:CDS 50.0%
CATGTGGCGTCACACTGAAA+CGG + chr8_3:62273795-62273814 Msa1300610:CDS 50.0%
ATGTGGCGTCACACTGAAAC+GGG + chr8_3:62273796-62273815 Msa1300610:CDS 50.0%
AAGTGGTTCCATCAAGCCGT+CGG + chr8_3:62274033-62274052 Msa1300610:intron 50.0%
AACACATACCGACGGCTTGA+TGG - chr8_3:62274044-62274063 None:intergenic 50.0%
!! CAGATTTCGAGGGTACTTGG+TGG + chr8_3:62274580-62274599 Msa1300610:intron 50.0%
!! TTTCGAGGGTACTTGGTGGA+AGG + chr8_3:62274584-62274603 Msa1300610:intron 50.0%
!!! TGGGCCGCTTGCTTTTTTCT+TGG - chr8_3:62275478-62275497 None:intergenic 50.0%
AAATTTGTCCGGTCCCGACT+TGG + chr8_3:62275700-62275719 Msa1300610:intron 50.0%
AATTTGTCCGGTCCCGACTT+GGG + chr8_3:62275701-62275720 Msa1300610:intron 50.0%
AGTGGATGAGCTGGAATTGC+TGG - chr8_3:62276634-62276653 None:intergenic 50.0%
GTGTTCTCAGCAGTAGGCAC+AGG - chr8_3:62273046-62273065 None:intergenic 55.0%
!!! GCTGTTTTGGTCCAAACGGC+GGG - chr8_3:62273093-62273112 None:intergenic 55.0%
ATCTGGAAGCCAGGACCTTG+TGG - chr8_3:62273136-62273155 None:intergenic 55.0%
GGTCCTGGCTTCCAGATCAA+TGG + chr8_3:62273139-62273158 Msa1300610:CDS 55.0%
TGGCCATTGATCTGGAAGCC+AGG - chr8_3:62273145-62273164 None:intergenic 55.0%
!! ATCACAATTGGGCTAGCCCC+AGG + chr8_3:62276541-62276560 Msa1300610:CDS 55.0%
ACATTGGCCCAAGTCGGGAC+CGG - chr8_3:62275711-62275730 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr8_3 gene 62272359 62277248 62272359 ID=Msa1300610;Name=Msa1300610
chr8_3 mRNA 62272359 62277248 62272359 ID=Msa1300610-mRNA-1;Parent=Msa1300610;Name=Msa1300610-mRNA-1;_AED=0.03;_eAED=0.03;_QI=522|0.66|1|1|1|1|4|143|470
chr8_3 exon 62272359 62273173 62272359 ID=Msa1300610-mRNA-1:exon:18492;Parent=Msa1300610-mRNA-1
chr8_3 exon 62273453 62273834 62273453 ID=Msa1300610-mRNA-1:exon:18493;Parent=Msa1300610-mRNA-1
chr8_3 exon 62276265 62276803 62276265 ID=Msa1300610-mRNA-1:exon:18494;Parent=Msa1300610-mRNA-1
chr8_3 exon 62276907 62277248 62276907 ID=Msa1300610-mRNA-1:exon:18495;Parent=Msa1300610-mRNA-1
chr8_3 five_prime_UTR 62272359 62272880 62272359 ID=Msa1300610-mRNA-1:five_prime_utr;Parent=Msa1300610-mRNA-1
chr8_3 CDS 62272881 62273173 62272881 ID=Msa1300610-mRNA-1:cds;Parent=Msa1300610-mRNA-1
chr8_3 CDS 62273453 62273834 62273453 ID=Msa1300610-mRNA-1:cds;Parent=Msa1300610-mRNA-1
chr8_3 CDS 62276265 62276803 62276265 ID=Msa1300610-mRNA-1:cds;Parent=Msa1300610-mRNA-1
chr8_3 CDS 62276907 62277105 62276907 ID=Msa1300610-mRNA-1:cds;Parent=Msa1300610-mRNA-1
chr8_3 three_prime_UTR 62277106 62277248 62277106 ID=Msa1300610-mRNA-1:three_prime_utr;Parent=Msa1300610-mRNA-1
Gene Sequence

>Msa1300610

ATGGGATGGTTTGGAGAAAAAGAGAGTAGAAGGACTGTGAGGATTGACTGCTTTTTGCATGAAAACAGTGTGAATATATATGTGAGGCCTATTACTGGATTAACAATTGTTGTTGATCTTGGTCTTATGAAAATTGTGGAGTATCATGACAGGGAGATTGAACCTGTGCCTACTGCTGAGAACACTGAATATCAGGTTTCAAAACAAAGCCCGCCGTTTGGACCAAAACAGCATAGTCTTGCTAGTCATCAACCACAAGGTCCTGGCTTCCAGATCAATGGCCACAGTGTTAGTTGGGCCAATTGGAAGTTTCACATAGGATTTGATGTACGAGCTGGTGTAATAATATCATTGGCTTCAACCTACGATCTAGAGAAGCACAAATTTCGTAGAGTATTATACAAAGGATACATTTCTGAACTTTTTGTGCCATACCAAGATCCATCTGATGAATTTTACTTTAAGACTTTCTTTGATGCTGGAGAGTTTGGATTTGGTTTGTCAACGGTGTCTTTGATACCTAATCGTGATTGTCCACCAAATGCCGAGTTCATTGATACATACACACACTCAGCAGAGGGTGCACCAATCCCCTTGAAGAATGCTGTCTGTGTTTTTGAACAATATAATAGTATCATGTGGCGTCACACTGAAACGGGCATTCCTAATGAACCCATAGCATTATCAGGTATACTTGAAATTAAGGCAACAAACATTAAGCATAAGGATGAGATTAAGGAAGATTTACATGGTACATTGGTGTCAGCAAACAGCATTGGAGTTTACCATGACCATTTCTACATCTACTACCTTGATCTTGATATTGATGGTACACACAACTCATTTGAGAAAACAAGTTTAAAGACAGTAAGAATCACTGATGGAAGTTCAAAGAGAAAGAGTTATTGGACCACTGAGACTCAAACTGCTAAGACAGAATCAGATGCAAAAATCACAATTGGGCTAGCCCCAGGTGAACTTGCATTTGTTAATCCAAACAAAAAAACTGCCGTTGGTAATGAAGTTGGATATCGTTTGATTCCAGCAATTCCAGCTCATCCACTTTTAACTGAAGATGATTATCCACAAATACGTGGTGCTTTCACTAATTATAATGTTTGGGTCACACCTTATAATAGAACTGAAAAATGGGCTGGTGGACTATATGTTGATCATAGCCATGGAGAAGACACATTAGCTGTTTGGACCAAAAAGAATAGAGACATTGTGAAAAAGGACATTGTGATGTGGCATGTAGTTGGAATTCATCATGTCCCAGCACAAGAAGATTTCCCAATAATGCCACTATTGAGCACTGGATTTGAGTTGAGGCCAACTAATTTCTTTGAGAGGAATCCTGTTCTTAAAACACTTTCTCCAAGAGATGTTAAATGGCCTGGTTGCCCCAAGTAA

Protein sequence

>Msa1300610

MGWFGEKESRRTVRIDCFLHENSVNIYVRPITGLTIVVDLGLMKIVEYHDREIEPVPTAENTEYQVSKQSPPFGPKQHSLASHQPQGPGFQINGHSVSWANWKFHIGFDVRAGVIISLASTYDLEKHKFRRVLYKGYISELFVPYQDPSDEFYFKTFFDAGEFGFGLSTVSLIPNRDCPPNAEFIDTYTHSAEGAPIPLKNAVCVFEQYNSIMWRHTETGIPNEPIALSGILEIKATNIKHKDEIKEDLHGTLVSANSIGVYHDHFYIYYLDLDIDGTHNSFEKTSLKTVRITDGSSKRKSYWTTETQTAKTESDAKITIGLAPGELAFVNPNKKTAVGNEVGYRLIPAIPAHPLLTEDDYPQIRGAFTNYNVWVTPYNRTEKWAGGLYVDHSHGEDTLAVWTKKNRDIVKKDIVMWHVVGIHHVPAQEDFPIMPLLSTGFELRPTNFFERNPVLKTLSPRDVKWPGCPK*