Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0336070 | XP_003596846.1 | 96.364 | 220 | 8 | 0 | 1 | 220 | 1 | 220 | 4.08e-152 | 431 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0336070 | sp|G7IHF9|CASP4_MEDTR | 96.364 | 220 | 8 | 0 | 1 | 220 | 1 | 220 | 5.10e-155 | 431 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0004580 | Msa0336070 | 0.822300 | 2.549755e-53 | -8.615850e-47 |
| Msa0024280 | Msa0336070 | 0.813025 | 3.153672e-51 | -8.615850e-47 |
| Msa0048950 | Msa0336070 | 0.835594 | 1.532401e-56 | -8.615850e-47 |
| Msa0059880 | Msa0336070 | 0.833070 | 6.585141e-56 | -8.615850e-47 |
| Msa0072030 | Msa0336070 | 0.813198 | 2.890592e-51 | -8.615850e-47 |
| Msa0102930 | Msa0336070 | 0.815506 | 8.925781e-52 | -8.615850e-47 |
| Msa0120050 | Msa0336070 | 0.810051 | 1.396712e-50 | -8.615850e-47 |
| Msa0120070 | Msa0336070 | 0.815607 | 8.475409e-52 | -8.615850e-47 |
| Msa0131460 | Msa0336070 | 0.815385 | 9.501062e-52 | -8.615850e-47 |
| Msa0143680 | Msa0336070 | 0.805309 | 1.420520e-49 | -8.615850e-47 |
| Msa0143710 | Msa0336070 | 0.822135 | 2.785368e-53 | -8.615850e-47 |
| Msa0143740 | Msa0336070 | 0.815035 | 1.136430e-51 | -8.615850e-47 |
| Msa0143770 | Msa0336070 | 0.821663 | 3.582282e-53 | -8.615850e-47 |
| Msa0147670 | Msa0336070 | 0.819740 | 9.909564e-53 | -8.615850e-47 |
| Msa0150910 | Msa0336070 | 0.820041 | 8.455602e-53 | -8.615850e-47 |
| Msa0163340 | Msa0336070 | 0.819247 | 1.283617e-52 | -8.615850e-47 |
| Msa0177260 | Msa0336070 | 0.804022 | 2.636828e-49 | -8.615850e-47 |
| Msa0219210 | Msa0336070 | 0.848837 | 4.750109e-60 | -8.615850e-47 |
| Msa0252880 | Msa0336070 | 0.812421 | 4.276119e-51 | -8.615850e-47 |
| Msa0298270 | Msa0336070 | 0.827471 | 1.535781e-54 | -8.615850e-47 |
| Msa0303120 | Msa0336070 | 0.801047 | 1.082782e-48 | -8.615850e-47 |
| Msa0336070 | Msa0374130 | 0.822926 | 1.823466e-53 | -8.615850e-47 |
| Msa0336070 | Msa0414480 | 0.812260 | 4.636061e-51 | -8.615850e-47 |
| Msa0336070 | Msa0469550 | 0.800126 | 1.667908e-48 | -8.615850e-47 |
| Msa0336070 | Msa0491760 | 0.816509 | 5.331940e-52 | -8.615850e-47 |
| Msa0336070 | Msa0591490 | 0.801984 | 6.957067e-49 | -8.615850e-47 |
| Msa0336070 | Msa0603950 | 0.819597 | 1.068233e-52 | -8.615850e-47 |
| Msa0336070 | Msa0605470 | 0.816867 | 4.430725e-52 | -8.615850e-47 |
| Msa0336070 | Msa0623980 | 0.805528 | 1.278403e-49 | -8.615850e-47 |
| Msa0336070 | Msa0640290 | 0.805462 | 1.319463e-49 | -8.615850e-47 |
| Msa0336070 | Msa0670360 | 0.821406 | 4.106318e-53 | -8.615850e-47 |
| Msa0336070 | Msa0684720 | 0.800298 | 1.539215e-48 | -8.615850e-47 |
| Msa0336070 | Msa0727480 | 0.815228 | 1.029151e-51 | -8.615850e-47 |
| Msa0336070 | Msa0768670 | 0.823376 | 1.431789e-53 | -8.615850e-47 |
| Msa0336070 | Msa0768720 | 0.827086 | 1.899213e-54 | -8.615850e-47 |
| Msa0336070 | Msa0777250 | 0.806649 | 7.425894e-50 | -8.615850e-47 |
| Msa0336070 | Msa0791300 | 0.813334 | 2.697959e-51 | -8.615850e-47 |
| Msa0336070 | Msa0802590 | 0.807290 | 5.433942e-50 | -8.615850e-47 |
| Msa0336070 | Msa0841130 | 0.808132 | 3.599369e-50 | -8.615850e-47 |
| Msa0336070 | Msa0883640 | 0.824291 | 8.739762e-54 | -8.615850e-47 |
| Msa0336070 | Msa0910830 | 0.843553 | 1.305525e-58 | -8.615850e-47 |
| Msa0336070 | Msa0913550 | 0.815448 | 9.196657e-52 | -8.615850e-47 |
| Msa0336070 | Msa0960090 | 0.827317 | 1.672639e-54 | -8.615850e-47 |
| Msa0336070 | Msa0971880 | 0.800231 | 1.588010e-48 | -8.615850e-47 |
| Msa0336070 | Msa0985700 | 0.826007 | 3.434734e-54 | -8.615850e-47 |
| Msa0336070 | Msa0993450 | 0.809527 | 1.810307e-50 | -8.615850e-47 |
| Msa0336070 | Msa1003110 | 0.820969 | 5.178349e-53 | -8.615850e-47 |
| Msa0336070 | Msa1021620 | 0.845341 | 4.313982e-59 | -8.615850e-47 |
| Msa0336070 | Msa1024350 | 0.828508 | 8.645427e-55 | -8.615850e-47 |
| Msa0336070 | Msa1061670 | 0.818147 | 2.280698e-52 | -8.615850e-47 |
| Msa0336070 | Msa1076830 | 0.815046 | 1.129930e-51 | -8.615850e-47 |
| Msa0336070 | Msa1081610 | 0.802163 | 6.389796e-49 | -8.615850e-47 |
| Msa0336070 | Msa1106960 | 0.811388 | 7.178987e-51 | -8.615850e-47 |
| Msa0336070 | Msa1109880 | 0.807759 | 4.320806e-50 | -8.615850e-47 |
| Msa0336070 | Msa1109890 | 0.832851 | 7.466475e-56 | -8.615850e-47 |
| Msa0336070 | Msa1133860 | 0.813840 | 2.087872e-51 | -8.615850e-47 |
| Msa0336070 | Msa1149020 | 0.826852 | 2.161116e-54 | -8.615850e-47 |
| Msa0336070 | Msa1233640 | 0.803881 | 2.821313e-49 | -8.615850e-47 |
| Msa0336070 | Msa1269050 | 0.812355 | 4.420796e-51 | -8.615850e-47 |
| Msa0336070 | Msa1286420 | 0.811362 | 7.273394e-51 | -8.615850e-47 |
| Msa0336070 | Msa1300610 | 0.817841 | 2.675523e-52 | -8.615850e-47 |
| Msa0336070 | Msa1323120 | 0.808128 | 3.605492e-50 | -8.615850e-47 |
| Msa0336070 | Msa1329740 | 0.807266 | 5.496505e-50 | -8.615850e-47 |
| Msa0336070 | Msa1376070 | 0.817712 | 2.860079e-52 | -8.615850e-47 |
| Msa0336070 | Msa1378400 | 0.806820 | 6.830947e-50 | -8.615850e-47 |
| Msa0336070 | Msa1407670 | 0.803479 | 3.418271e-49 | -8.615850e-47 |
| Msa0336070 | Msa1420020 | 0.840603 | 7.874297e-58 | -8.615850e-47 |
| Msa0336070 | Msa1421120 | 0.816734 | 4.747967e-52 | -8.615850e-47 |
| Msa0336070 | Msa1449770 | 0.806112 | 9.632903e-50 | -8.615850e-47 |
| Msa0336070 | Msa1459610 | 0.844849 | 5.859847e-59 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0336070 | MtrunA17_Chr2g0321671 | 96.364 | 220 | 8 | 0 | 1 | 220 | 1 | 220 | 3.76e-156 | 431 |
| Msa0336070 | MtrunA17_Chr1g0178161 | 59.064 | 171 | 70 | 0 | 49 | 219 | 25 | 195 | 3.07e-61 | 190 |
| Msa0336070 | MtrunA17_Chr1g0178181 | 59.538 | 173 | 70 | 0 | 47 | 219 | 22 | 194 | 1.73e-57 | 180 |
| Msa0336070 | MtrunA17_Chr1g0178191 | 53.226 | 186 | 84 | 1 | 37 | 219 | 8 | 193 | 2.03e-55 | 175 |
| Msa0336070 | MtrunA17_Chr7g0217691 | 48.276 | 174 | 90 | 0 | 46 | 219 | 12 | 185 | 1.19e-50 | 162 |
| Msa0336070 | MtrunA17_Chr4g0042551 | 43.243 | 185 | 99 | 1 | 42 | 220 | 33 | 217 | 1.15e-46 | 153 |
| Msa0336070 | MtrunA17_Chr5g0417761 | 43.590 | 195 | 100 | 1 | 26 | 220 | 2 | 186 | 2.84e-42 | 141 |
| Msa0336070 | MtrunA17_Chr7g0251531 | 33.094 | 139 | 90 | 2 | 65 | 202 | 33 | 169 | 3.23e-16 | 73.6 |
| Msa0336070 | MtrunA17_Chr4g0021111 | 34.899 | 149 | 84 | 4 | 55 | 201 | 1 | 138 | 4.53e-16 | 72.8 |
| Msa0336070 | MtrunA17_Chr7g0268681 | 28.877 | 187 | 115 | 5 | 24 | 206 | 3 | 175 | 3.11e-15 | 71.2 |
| Msa0336070 | MtrunA17_Chr3g0109681 | 28.141 | 199 | 103 | 5 | 40 | 216 | 7 | 187 | 2.50e-14 | 69.3 |
| Msa0336070 | MtrunA17_Chr2g0303151 | 29.565 | 115 | 81 | 0 | 99 | 213 | 71 | 185 | 3.74e-12 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0336070 | AT2G27370.1 | 48.649 | 222 | 101 | 5 | 3 | 220 | 8 | 220 | 7.14e-63 | 195 |
| Msa0336070 | AT2G36100.1 | 54.762 | 168 | 76 | 0 | 52 | 219 | 38 | 205 | 8.22e-59 | 184 |
| Msa0336070 | AT5G06200.1 | 60.479 | 167 | 66 | 0 | 53 | 219 | 35 | 201 | 3.76e-54 | 172 |
| Msa0336070 | AT5G15290.1 | 49.686 | 159 | 79 | 1 | 43 | 200 | 8 | 166 | 1.24e-51 | 165 |
| Msa0336070 | AT3G11550.1 | 59.880 | 167 | 67 | 0 | 53 | 219 | 37 | 203 | 7.10e-50 | 161 |
| Msa0336070 | AT1G14160.1 | 43.030 | 165 | 94 | 0 | 55 | 219 | 44 | 208 | 3.76e-42 | 142 |
| Msa0336070 | AT1G17200.1 | 29.193 | 161 | 105 | 3 | 58 | 217 | 29 | 181 | 2.86e-15 | 72.0 |
| Msa0336070 | AT3G06390.1 | 28.161 | 174 | 104 | 4 | 24 | 190 | 11 | 170 | 3.76e-15 | 71.6 |
| Msa0336070 | AT5G44550.1 | 30.247 | 162 | 101 | 4 | 66 | 219 | 22 | 179 | 6.01e-12 | 62.8 |
| Msa0336070 | AT1G03700.1 | 31.973 | 147 | 84 | 4 | 65 | 206 | 12 | 147 | 3.01e-11 | 60.1 |
| Msa0336070 | AT4G15610.1 | 27.545 | 167 | 117 | 2 | 40 | 202 | 7 | 173 | 5.13e-11 | 60.1 |
Find 48 sgRNAs with CRISPR-Local
Find 178 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTTGTTCTCTTGGATTCT+AGG | 0.131201 | 2_4:+55338578 | None:intergenic |
| TCTTGGTGCTTCTGTCATTA+TGG | 0.177988 | 2_4:-55338401 | Msa0336070:CDS |
| TACCTAATTGCAGGTATTAA+TGG | 0.240857 | 2_4:-55337495 | Msa0336070:intron |
| TCCATTGCTTCTTGTTCTCT+TGG | 0.247900 | 2_4:+55338570 | None:intergenic |
| CTTGGTGCTTCTGTCATTAT+GGG | 0.276810 | 2_4:-55338400 | Msa0336070:CDS |
| AAATCTACTCCAATCCAAAA+AGG | 0.350579 | 2_4:-55338487 | Msa0336070:CDS |
| ATGGGAGTCAAGATGCAAAT+TGG | 0.351329 | 2_4:-55337418 | Msa0336070:CDS |
| TCCTTCAGTTTCATGCTCAA+TGG | 0.391797 | 2_4:-55338342 | Msa0336070:CDS |
| CCTTCAGTTTCATGCTCAAT+GGG | 0.394063 | 2_4:-55338341 | Msa0336070:CDS |
| GGTGCCATTGGTGCTACTCT+TGG | 0.400369 | 2_4:-55338418 | Msa0336070:CDS |
| TGTTCTCTTGGATTCTAGGA+TGG | 0.406134 | 2_4:+55338582 | None:intergenic |
| GCAGGTATTAATGGCCTTAG+TGG | 0.406928 | 2_4:-55337486 | Msa0336070:intron |
| ACATGAACTTACTTAAACAT+TGG | 0.425523 | 2_4:+55338310 | None:intergenic |
| AGAACAAGAAGCAATGGAAA+AGG | 0.427010 | 2_4:-55338565 | Msa0336070:CDS |
| ACACCACAACCAAACAAGAT+AGG | 0.440488 | 2_4:+55337315 | None:intergenic |
| GTTCTCTTGGATTCTAGGAT+GGG | 0.446748 | 2_4:+55338583 | None:intergenic |
| CTAAACATGCAGGTTCTTTG+TGG | 0.448810 | 2_4:-55337739 | Msa0336070:intron |
| GAACAAGAAGCAATGGAAAA+GGG | 0.449907 | 2_4:-55338564 | Msa0336070:CDS |
| ATTGTTAGACCCCTTGCAGC+TGG | 0.465698 | 2_4:-55337657 | Msa0336070:CDS |
| GGAAAAGGGAAATCCATTGA+TGG | 0.488181 | 2_4:-55338550 | Msa0336070:CDS |
| TTTCCTATCTTGTTTGGTTG+TGG | 0.489463 | 2_4:-55337318 | Msa0336070:CDS |
| CCAAGGTTCAAGTTTGGCTG+TGG | 0.491266 | 2_4:-55337363 | Msa0336070:CDS |
| GTGGCAAATGGAGCAGCAGC+TGG | 0.512854 | 2_4:-55337717 | Msa0336070:CDS |
| TTGTGTACTTAGCACACAAT+GGG | 0.520027 | 2_4:-55337436 | Msa0336070:CDS |
| TGTCTTCTGTAGCTCTCAAA+AGG | 0.525875 | 2_4:-55337295 | Msa0336070:CDS |
| AGGTTCTTTGTGGTGGCAAA+TGG | 0.527477 | 2_4:-55337729 | Msa0336070:CDS |
| GACCCCTTGCAGCTGGTCCA+CGG | 0.529518 | 2_4:-55337650 | Msa0336070:CDS |
| TCCAAGAGAACAAGAAGCAA+TGG | 0.530743 | 2_4:-55338571 | Msa0336070:CDS |
| CCACAGCCAAACTTGAACCT+TGG | 0.532217 | 2_4:+55337363 | None:intergenic |
| AGGAGAATGATCTCCATCAA+TGG | 0.544643 | 2_4:+55338537 | None:intergenic |
| TGAAGCAGCTGCAACCACTA+AGG | 0.546688 | 2_4:+55337472 | None:intergenic |
| TGAAGGAACTGAGTAAAGAA+AGG | 0.555422 | 2_4:+55338358 | None:intergenic |
| AATCCGTGGACCAGCTGCAA+GGG | 0.560165 | 2_4:+55337647 | None:intergenic |
| AACATGCAGGTTCTTTGTGG+TGG | 0.566783 | 2_4:-55337736 | Msa0336070:intron |
| GGTTGTTTCTTTCGTTGCGT+CGG | 0.570523 | 2_4:-55337342 | Msa0336070:CDS |
| TTGGTGCTTCTGTCATTATG+GGG | 0.574068 | 2_4:-55338399 | Msa0336070:CDS |
| GCAGACAATTGAGAATGGTA+AGG | 0.574191 | 2_4:+55337680 | None:intergenic |
| ACAATGCAGACAATTGAGAA+TGG | 0.577153 | 2_4:+55337675 | None:intergenic |
| GGACTCAAGAAGAGTAGTTG+AGG | 0.593086 | 2_4:-55338620 | Msa0336070:CDS |
| CCCATTGAGCATGAAACTGA+AGG | 0.601992 | 2_4:+55338341 | None:intergenic |
| GAATCCGTGGACCAGCTGCA+AGG | 0.605753 | 2_4:+55337646 | None:intergenic |
| AGCACCAAGAGTAGCACCAA+TGG | 0.630653 | 2_4:+55338414 | None:intergenic |
| GTTGTGTACTTAGCACACAA+TGG | 0.633961 | 2_4:-55337437 | Msa0336070:CDS |
| ATCCGTGGACCAGCTGCAAG+GGG | 0.635198 | 2_4:+55337648 | None:intergenic |
| CAATTGAGAATGGTAAGGAG+AGG | 0.647713 | 2_4:+55337685 | None:intergenic |
| ACAACAGTTGCAGCATGTGG+AGG | 0.650553 | 2_4:+55338517 | None:intergenic |
| GTAACAACAGTTGCAGCATG+TGG | 0.663640 | 2_4:+55338514 | None:intergenic |
| ACGATGACAAGTAGAATCCG+TGG | 0.676654 | 2_4:+55337633 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTACAATTAATTGTATTTT+TGG | - | chr2_4:55337723-55337742 | Msa0336070:CDS | 10.0% |
| !!! | TTTACAATTAATTGTATTTT+TGG | - | chr2_4:55337723-55337742 | Msa0336070:CDS | 10.0% |
| !! | AAACAATAAATTTCAAGAAT+AGG | - | chr2_4:55337917-55337936 | Msa0336070:intron | 15.0% |
| !!! | TTTAAATATCATCCTTTTTA+TGG | - | chr2_4:55338147-55338166 | Msa0336070:intron | 15.0% |
| !! | AAACAATAAATTTCAAGAAT+AGG | - | chr2_4:55337917-55337936 | Msa0336070:intron | 15.0% |
| !!! | TTTAAATATCATCCTTTTTA+TGG | - | chr2_4:55338147-55338166 | Msa0336070:intron | 15.0% |
| !! | TAGTATTGTAAAGATCAAAT+GGG | + | chr2_4:55337643-55337662 | None:intergenic | 20.0% |
| !! | ATAGTATTGTAAAGATCAAA+TGG | + | chr2_4:55337644-55337663 | None:intergenic | 20.0% |
| !! | AATTGTGTTTCAGTTAAAAT+AGG | + | chr2_4:55337753-55337772 | None:intergenic | 20.0% |
| !!! | AGAAAAAAGTTTTGAAACAA+GGG | + | chr2_4:55337810-55337829 | None:intergenic | 20.0% |
| !! | AGAAAAAAAAATGTTCTTAG+AGG | - | chr2_4:55337965-55337984 | Msa0336070:intron | 20.0% |
| !! | GAAAAAAAAATGTTCTTAGA+GGG | - | chr2_4:55337966-55337985 | Msa0336070:intron | 20.0% |
| !! | TAGTATTGTAAAGATCAAAT+GGG | + | chr2_4:55337643-55337662 | None:intergenic | 20.0% |
| !! | ATAGTATTGTAAAGATCAAA+TGG | + | chr2_4:55337644-55337663 | None:intergenic | 20.0% |
| !! | AATTGTGTTTCAGTTAAAAT+AGG | + | chr2_4:55337753-55337772 | None:intergenic | 20.0% |
| !!! | AGAAAAAAGTTTTGAAACAA+GGG | + | chr2_4:55337810-55337829 | None:intergenic | 20.0% |
| !! | AGAAAAAAAAATGTTCTTAG+AGG | - | chr2_4:55337965-55337984 | Msa0336070:intron | 20.0% |
| !! | GAAAAAAAAATGTTCTTAGA+GGG | - | chr2_4:55337966-55337985 | Msa0336070:intron | 20.0% |
| !! | CAATCTTAGACTTCATTTTA+AGG | - | chr2_4:55337467-55337486 | Msa0336070:CDS | 25.0% |
| ! | ACATGAACTTACTTAAACAT+TGG | + | chr2_4:55337604-55337623 | None:intergenic | 25.0% |
| ! | AGTAAGTTCATGTTACATAA+CGG | - | chr2_4:55337611-55337630 | Msa0336070:intron | 25.0% |
| !!! | AACACTTTTTAAGAATGACT+TGG | - | chr2_4:55337692-55337711 | Msa0336070:CDS | 25.0% |
| !!! | GAAAAAAGTTTTGAAACAAG+GGG | + | chr2_4:55337809-55337828 | None:intergenic | 25.0% |
| !!! | GAGAAAAAAGTTTTGAAACA+AGG | + | chr2_4:55337811-55337830 | None:intergenic | 25.0% |
| !!! | TTTTCTCACAACTTAATTTG+AGG | - | chr2_4:55337824-55337843 | Msa0336070:intron | 25.0% |
| ! | AATATGTCACGTCATAAAAT+AGG | + | chr2_4:55337853-55337872 | None:intergenic | 25.0% |
| ! | TTACATCCGATAAATGAAAT+CGG | - | chr2_4:55337941-55337960 | Msa0336070:intron | 25.0% |
| ! | TTTCTTCCGATTTCATTTAT+CGG | + | chr2_4:55337950-55337969 | None:intergenic | 25.0% |
| !! | CAATCTTAGACTTCATTTTA+AGG | - | chr2_4:55337467-55337486 | Msa0336070:CDS | 25.0% |
| ! | ACATGAACTTACTTAAACAT+TGG | + | chr2_4:55337604-55337623 | None:intergenic | 25.0% |
| ! | AGTAAGTTCATGTTACATAA+CGG | - | chr2_4:55337611-55337630 | Msa0336070:intron | 25.0% |
| !!! | AACACTTTTTAAGAATGACT+TGG | - | chr2_4:55337692-55337711 | Msa0336070:CDS | 25.0% |
| !!! | GAAAAAAGTTTTGAAACAAG+GGG | + | chr2_4:55337809-55337828 | None:intergenic | 25.0% |
| !!! | GAGAAAAAAGTTTTGAAACA+AGG | + | chr2_4:55337811-55337830 | None:intergenic | 25.0% |
| !!! | TTTTCTCACAACTTAATTTG+AGG | - | chr2_4:55337824-55337843 | Msa0336070:intron | 25.0% |
| ! | AATATGTCACGTCATAAAAT+AGG | + | chr2_4:55337853-55337872 | None:intergenic | 25.0% |
| ! | TTACATCCGATAAATGAAAT+CGG | - | chr2_4:55337941-55337960 | Msa0336070:intron | 25.0% |
| ! | TTTCTTCCGATTTCATTTAT+CGG | + | chr2_4:55337950-55337969 | None:intergenic | 25.0% |
| AAATCTACTCCAATCCAAAA+AGG | - | chr2_4:55337424-55337443 | Msa0336070:CDS | 30.0% | |
| CAAAAAGGTGGAATGAAAAA+GGG | - | chr2_4:55337439-55337458 | Msa0336070:CDS | 30.0% | |
| !!! | TTAGACTTCATTTTAAGGCT+TGG | - | chr2_4:55337472-55337491 | Msa0336070:CDS | 30.0% |
| TGTGTTTCAGTTAAAATAGG+AGG | + | chr2_4:55337750-55337769 | None:intergenic | 30.0% | |
| !! | ACGATATGAGAGTGTTTATT+TGG | + | chr2_4:55337998-55338017 | None:intergenic | 30.0% |
| !!! | TAAACAATGTTTTGATGACG+TGG | + | chr2_4:55338031-55338050 | None:intergenic | 30.0% |
| GCATGTTTAGATCCATAAAA+AGG | + | chr2_4:55338162-55338181 | None:intergenic | 30.0% | |
| ! | TTTTATGGATCTAAACATGC+AGG | - | chr2_4:55338162-55338181 | Msa0336070:intron | 30.0% |
| TACCTAATTGCAGGTATTAA+TGG | - | chr2_4:55338416-55338435 | Msa0336070:CDS | 30.0% | |
| AAATCTACTCCAATCCAAAA+AGG | - | chr2_4:55337424-55337443 | Msa0336070:CDS | 30.0% | |
| CAAAAAGGTGGAATGAAAAA+GGG | - | chr2_4:55337439-55337458 | Msa0336070:CDS | 30.0% | |
| !!! | TTAGACTTCATTTTAAGGCT+TGG | - | chr2_4:55337472-55337491 | Msa0336070:CDS | 30.0% |
| TGTGTTTCAGTTAAAATAGG+AGG | + | chr2_4:55337750-55337769 | None:intergenic | 30.0% | |
| !! | ACGATATGAGAGTGTTTATT+TGG | + | chr2_4:55337998-55338017 | None:intergenic | 30.0% |
| !!! | TAAACAATGTTTTGATGACG+TGG | + | chr2_4:55338031-55338050 | None:intergenic | 30.0% |
| GCATGTTTAGATCCATAAAA+AGG | + | chr2_4:55338162-55338181 | None:intergenic | 30.0% | |
| ! | TTTTATGGATCTAAACATGC+AGG | - | chr2_4:55338162-55338181 | Msa0336070:intron | 30.0% |
| TACCTAATTGCAGGTATTAA+TGG | - | chr2_4:55338416-55338435 | Msa0336070:CDS | 30.0% | |
| TTCTTGTTCTCTTGGATTCT+AGG | + | chr2_4:55337336-55337355 | None:intergenic | 35.0% | |
| AGAACAAGAAGCAATGGAAA+AGG | - | chr2_4:55337346-55337365 | Msa0336070:CDS | 35.0% | |
| GAACAAGAAGCAATGGAAAA+GGG | - | chr2_4:55337347-55337366 | Msa0336070:CDS | 35.0% | |
| ! | TTCATTCCACCTTTTTGGAT+TGG | + | chr2_4:55337436-55337455 | None:intergenic | 35.0% |
| !! | CCTTTTTCATTCCACCTTTT+TGG | + | chr2_4:55337441-55337460 | None:intergenic | 35.0% |
| CCAAAAAGGTGGAATGAAAA+AGG | - | chr2_4:55337438-55337457 | Msa0336070:CDS | 35.0% | |
| TGAAGGAACTGAGTAAAGAA+AGG | + | chr2_4:55337556-55337575 | None:intergenic | 35.0% | |
| CGAAATTGCAAGGATATGAA+GGG | + | chr2_4:55338103-55338122 | None:intergenic | 35.0% | |
| ACAATGCAGACAATTGAGAA+TGG | + | chr2_4:55338239-55338258 | None:intergenic | 35.0% | |
| TTGTGTACTTAGCACACAAT+GGG | - | chr2_4:55338475-55338494 | Msa0336070:CDS | 35.0% | |
| !! | TTTTTGCCAAGGTTCAAGTT+TGG | - | chr2_4:55338542-55338561 | Msa0336070:CDS | 35.0% |
| ! | TTTCCTATCTTGTTTGGTTG+TGG | - | chr2_4:55338593-55338612 | Msa0336070:CDS | 35.0% |
| TTCTTGTTCTCTTGGATTCT+AGG | + | chr2_4:55337336-55337355 | None:intergenic | 35.0% | |
| AGAACAAGAAGCAATGGAAA+AGG | - | chr2_4:55337346-55337365 | Msa0336070:CDS | 35.0% | |
| GAACAAGAAGCAATGGAAAA+GGG | - | chr2_4:55337347-55337366 | Msa0336070:CDS | 35.0% | |
| ! | TTCATTCCACCTTTTTGGAT+TGG | + | chr2_4:55337436-55337455 | None:intergenic | 35.0% |
| !! | CCTTTTTCATTCCACCTTTT+TGG | + | chr2_4:55337441-55337460 | None:intergenic | 35.0% |
| CCAAAAAGGTGGAATGAAAA+AGG | - | chr2_4:55337438-55337457 | Msa0336070:CDS | 35.0% | |
| TGAAGGAACTGAGTAAAGAA+AGG | + | chr2_4:55337556-55337575 | None:intergenic | 35.0% | |
| CGAAATTGCAAGGATATGAA+GGG | + | chr2_4:55338103-55338122 | None:intergenic | 35.0% | |
| ACAATGCAGACAATTGAGAA+TGG | + | chr2_4:55338239-55338258 | None:intergenic | 35.0% | |
| TTGTGTACTTAGCACACAAT+GGG | - | chr2_4:55338475-55338494 | Msa0336070:CDS | 35.0% | |
| !! | TTTTTGCCAAGGTTCAAGTT+TGG | - | chr2_4:55338542-55338561 | Msa0336070:CDS | 35.0% |
| ! | TTTCCTATCTTGTTTGGTTG+TGG | - | chr2_4:55338593-55338612 | Msa0336070:CDS | 35.0% |
| !! | GTTCTCTTGGATTCTAGGAT+GGG | + | chr2_4:55337331-55337350 | None:intergenic | 40.0% |
| ! | TGTTCTCTTGGATTCTAGGA+TGG | + | chr2_4:55337332-55337351 | None:intergenic | 40.0% |
| TCCAAGAGAACAAGAAGCAA+TGG | - | chr2_4:55337340-55337359 | Msa0336070:CDS | 40.0% | |
| TCCATTGCTTCTTGTTCTCT+TGG | + | chr2_4:55337344-55337363 | None:intergenic | 40.0% | |
| GGAAAAGGGAAATCCATTGA+TGG | - | chr2_4:55337361-55337380 | Msa0336070:CDS | 40.0% | |
| AGGAGAATGATCTCCATCAA+TGG | + | chr2_4:55337377-55337396 | None:intergenic | 40.0% | |
| TCTACTCCAATCCAAAAAGG+TGG | - | chr2_4:55337427-55337446 | Msa0336070:CDS | 40.0% | |
| !!! | ATTTTAAGGCTTGGTGCCAT+TGG | - | chr2_4:55337481-55337500 | Msa0336070:CDS | 40.0% |
| !! | TCTTGGTGCTTCTGTCATTA+TGG | - | chr2_4:55337510-55337529 | Msa0336070:intron | 40.0% |
| !! | CTTGGTGCTTCTGTCATTAT+GGG | - | chr2_4:55337511-55337530 | Msa0336070:intron | 40.0% |
| ! | TTGGTGCTTCTGTCATTATG+GGG | - | chr2_4:55337512-55337531 | Msa0336070:intron | 40.0% |
| TCCTTCAGTTTCATGCTCAA+TGG | - | chr2_4:55337569-55337588 | Msa0336070:intron | 40.0% | |
| CCTTCAGTTTCATGCTCAAT+GGG | - | chr2_4:55337570-55337589 | Msa0336070:intron | 40.0% | |
| AATTGCAAGGATATGAAGGG+AGG | + | chr2_4:55338100-55338119 | None:intergenic | 40.0% | |
| GCGAAATTGCAAGGATATGA+AGG | + | chr2_4:55338104-55338123 | None:intergenic | 40.0% | |
| CTATAGCAAGTAAAGATGCC+AGG | + | chr2_4:55338126-55338145 | None:intergenic | 40.0% | |
| CTAAACATGCAGGTTCTTTG+TGG | - | chr2_4:55338172-55338191 | Msa0336070:intron | 40.0% | |
| CAATTGAGAATGGTAAGGAG+AGG | + | chr2_4:55338229-55338248 | None:intergenic | 40.0% | |
| GCAGACAATTGAGAATGGTA+AGG | + | chr2_4:55338234-55338253 | None:intergenic | 40.0% | |
| AATGTTCGCTACCTAATTGC+AGG | - | chr2_4:55338407-55338426 | Msa0336070:CDS | 40.0% | |
| GGCCATTAATACCTGCAATT+AGG | + | chr2_4:55338421-55338440 | None:intergenic | 40.0% | |
| GTTGTGTACTTAGCACACAA+TGG | - | chr2_4:55338474-55338493 | Msa0336070:CDS | 40.0% | |
| ATGGGAGTCAAGATGCAAAT+TGG | - | chr2_4:55338493-55338512 | Msa0336070:CDS | 40.0% | |
| !!! | CAGTTCACTGATTTTTGCCA+AGG | - | chr2_4:55338531-55338550 | Msa0336070:CDS | 40.0% |
| !! | GTCGGTTTTCCTATCTTGTT+TGG | - | chr2_4:55338587-55338606 | Msa0336070:CDS | 40.0% |
| ACACCACAACCAAACAAGAT+AGG | + | chr2_4:55338599-55338618 | None:intergenic | 40.0% | |
| TGTCTTCTGTAGCTCTCAAA+AGG | - | chr2_4:55338616-55338635 | Msa0336070:CDS | 40.0% | |
| !! | GTTCTCTTGGATTCTAGGAT+GGG | + | chr2_4:55337331-55337350 | None:intergenic | 40.0% |
| ! | TGTTCTCTTGGATTCTAGGA+TGG | + | chr2_4:55337332-55337351 | None:intergenic | 40.0% |
| TCCAAGAGAACAAGAAGCAA+TGG | - | chr2_4:55337340-55337359 | Msa0336070:CDS | 40.0% | |
| TCCATTGCTTCTTGTTCTCT+TGG | + | chr2_4:55337344-55337363 | None:intergenic | 40.0% | |
| GGAAAAGGGAAATCCATTGA+TGG | - | chr2_4:55337361-55337380 | Msa0336070:CDS | 40.0% | |
| AGGAGAATGATCTCCATCAA+TGG | + | chr2_4:55337377-55337396 | None:intergenic | 40.0% | |
| TCTACTCCAATCCAAAAAGG+TGG | - | chr2_4:55337427-55337446 | Msa0336070:CDS | 40.0% | |
| !!! | ATTTTAAGGCTTGGTGCCAT+TGG | - | chr2_4:55337481-55337500 | Msa0336070:CDS | 40.0% |
| !! | TCTTGGTGCTTCTGTCATTA+TGG | - | chr2_4:55337510-55337529 | Msa0336070:intron | 40.0% |
| !! | CTTGGTGCTTCTGTCATTAT+GGG | - | chr2_4:55337511-55337530 | Msa0336070:intron | 40.0% |
| ! | TTGGTGCTTCTGTCATTATG+GGG | - | chr2_4:55337512-55337531 | Msa0336070:intron | 40.0% |
| TCCTTCAGTTTCATGCTCAA+TGG | - | chr2_4:55337569-55337588 | Msa0336070:intron | 40.0% | |
| CCTTCAGTTTCATGCTCAAT+GGG | - | chr2_4:55337570-55337589 | Msa0336070:intron | 40.0% | |
| AATTGCAAGGATATGAAGGG+AGG | + | chr2_4:55338100-55338119 | None:intergenic | 40.0% | |
| GCGAAATTGCAAGGATATGA+AGG | + | chr2_4:55338104-55338123 | None:intergenic | 40.0% | |
| CTATAGCAAGTAAAGATGCC+AGG | + | chr2_4:55338126-55338145 | None:intergenic | 40.0% | |
| CTAAACATGCAGGTTCTTTG+TGG | - | chr2_4:55338172-55338191 | Msa0336070:intron | 40.0% | |
| CAATTGAGAATGGTAAGGAG+AGG | + | chr2_4:55338229-55338248 | None:intergenic | 40.0% | |
| GCAGACAATTGAGAATGGTA+AGG | + | chr2_4:55338234-55338253 | None:intergenic | 40.0% | |
| AATGTTCGCTACCTAATTGC+AGG | - | chr2_4:55338407-55338426 | Msa0336070:CDS | 40.0% | |
| GGCCATTAATACCTGCAATT+AGG | + | chr2_4:55338421-55338440 | None:intergenic | 40.0% | |
| GTTGTGTACTTAGCACACAA+TGG | - | chr2_4:55338474-55338493 | Msa0336070:CDS | 40.0% | |
| ATGGGAGTCAAGATGCAAAT+TGG | - | chr2_4:55338493-55338512 | Msa0336070:CDS | 40.0% | |
| !!! | CAGTTCACTGATTTTTGCCA+AGG | - | chr2_4:55338531-55338550 | Msa0336070:CDS | 40.0% |
| !! | GTCGGTTTTCCTATCTTGTT+TGG | - | chr2_4:55338587-55338606 | Msa0336070:CDS | 40.0% |
| ACACCACAACCAAACAAGAT+AGG | + | chr2_4:55338599-55338618 | None:intergenic | 40.0% | |
| TGTCTTCTGTAGCTCTCAAA+AGG | - | chr2_4:55338616-55338635 | Msa0336070:CDS | 40.0% | |
| GGACTCAAGAAGAGTAGTTG+AGG | - | chr2_4:55337291-55337310 | Msa0336070:CDS | 45.0% | |
| GTAACAACAGTTGCAGCATG+TGG | + | chr2_4:55337400-55337419 | None:intergenic | 45.0% | |
| CCCATTGAGCATGAAACTGA+AGG | + | chr2_4:55337573-55337592 | None:intergenic | 45.0% | |
| CATATCCTTGCAATTTCGCC+TGG | - | chr2_4:55338105-55338124 | Msa0336070:intron | 45.0% | |
| AACATGCAGGTTCTTTGTGG+TGG | - | chr2_4:55338175-55338194 | Msa0336070:intron | 45.0% | |
| AGGTTCTTTGTGGTGGCAAA+TGG | - | chr2_4:55338182-55338201 | Msa0336070:intron | 45.0% | |
| ACGATGACAAGTAGAATCCG+TGG | + | chr2_4:55338281-55338300 | None:intergenic | 45.0% | |
| ! | GCAGGTATTAATGGCCTTAG+TGG | - | chr2_4:55338425-55338444 | Msa0336070:CDS | 45.0% |
| !! | GGTTGTTTCTTTCGTTGCGT+CGG | - | chr2_4:55338569-55338588 | Msa0336070:CDS | 45.0% |
| GGACTCAAGAAGAGTAGTTG+AGG | - | chr2_4:55337291-55337310 | Msa0336070:CDS | 45.0% | |
| GTAACAACAGTTGCAGCATG+TGG | + | chr2_4:55337400-55337419 | None:intergenic | 45.0% | |
| CCCATTGAGCATGAAACTGA+AGG | + | chr2_4:55337573-55337592 | None:intergenic | 45.0% | |
| CATATCCTTGCAATTTCGCC+TGG | - | chr2_4:55338105-55338124 | Msa0336070:intron | 45.0% | |
| AACATGCAGGTTCTTTGTGG+TGG | - | chr2_4:55338175-55338194 | Msa0336070:intron | 45.0% | |
| AGGTTCTTTGTGGTGGCAAA+TGG | - | chr2_4:55338182-55338201 | Msa0336070:intron | 45.0% | |
| ACGATGACAAGTAGAATCCG+TGG | + | chr2_4:55338281-55338300 | None:intergenic | 45.0% | |
| ! | GCAGGTATTAATGGCCTTAG+TGG | - | chr2_4:55338425-55338444 | Msa0336070:CDS | 45.0% |
| !! | GGTTGTTTCTTTCGTTGCGT+CGG | - | chr2_4:55338569-55338588 | Msa0336070:CDS | 45.0% |
| ACAACAGTTGCAGCATGTGG+AGG | + | chr2_4:55337397-55337416 | None:intergenic | 50.0% | |
| AGCACCAAGAGTAGCACCAA+TGG | + | chr2_4:55337500-55337519 | None:intergenic | 50.0% | |
| AGATGCCAGGCGAAATTGCA+AGG | + | chr2_4:55338113-55338132 | None:intergenic | 50.0% | |
| ATTGTTAGACCCCTTGCAGC+TGG | - | chr2_4:55338254-55338273 | Msa0336070:intron | 50.0% | |
| TGAAGCAGCTGCAACCACTA+AGG | + | chr2_4:55338442-55338461 | None:intergenic | 50.0% | |
| CCACAGCCAAACTTGAACCT+TGG | + | chr2_4:55338551-55338570 | None:intergenic | 50.0% | |
| ! | CCAAGGTTCAAGTTTGGCTG+TGG | - | chr2_4:55338548-55338567 | Msa0336070:CDS | 50.0% |
| ACAACAGTTGCAGCATGTGG+AGG | + | chr2_4:55337397-55337416 | None:intergenic | 50.0% | |
| AGCACCAAGAGTAGCACCAA+TGG | + | chr2_4:55337500-55337519 | None:intergenic | 50.0% | |
| AGATGCCAGGCGAAATTGCA+AGG | + | chr2_4:55338113-55338132 | None:intergenic | 50.0% | |
| ATTGTTAGACCCCTTGCAGC+TGG | - | chr2_4:55338254-55338273 | Msa0336070:intron | 50.0% | |
| TGAAGCAGCTGCAACCACTA+AGG | + | chr2_4:55338442-55338461 | None:intergenic | 50.0% | |
| CCACAGCCAAACTTGAACCT+TGG | + | chr2_4:55338551-55338570 | None:intergenic | 50.0% | |
| ! | CCAAGGTTCAAGTTTGGCTG+TGG | - | chr2_4:55338548-55338567 | Msa0336070:CDS | 50.0% |
| !! | GGTGCCATTGGTGCTACTCT+TGG | - | chr2_4:55337493-55337512 | Msa0336070:intron | 55.0% |
| AATCCGTGGACCAGCTGCAA+GGG | + | chr2_4:55338267-55338286 | None:intergenic | 55.0% | |
| !! | GGTGCCATTGGTGCTACTCT+TGG | - | chr2_4:55337493-55337512 | Msa0336070:intron | 55.0% |
| AATCCGTGGACCAGCTGCAA+GGG | + | chr2_4:55338267-55338286 | None:intergenic | 55.0% | |
| GTGGCAAATGGAGCAGCAGC+TGG | - | chr2_4:55338194-55338213 | Msa0336070:intron | 60.0% | |
| ATCCGTGGACCAGCTGCAAG+GGG | + | chr2_4:55338266-55338285 | None:intergenic | 60.0% | |
| GAATCCGTGGACCAGCTGCA+AGG | + | chr2_4:55338268-55338287 | None:intergenic | 60.0% | |
| GTGGCAAATGGAGCAGCAGC+TGG | - | chr2_4:55338194-55338213 | Msa0336070:intron | 60.0% | |
| ATCCGTGGACCAGCTGCAAG+GGG | + | chr2_4:55338266-55338285 | None:intergenic | 60.0% | |
| GAATCCGTGGACCAGCTGCA+AGG | + | chr2_4:55338268-55338287 | None:intergenic | 60.0% | |
| GACCCCTTGCAGCTGGTCCA+CGG | - | chr2_4:55338261-55338280 | Msa0336070:intron | 65.0% | |
| GACCCCTTGCAGCTGGTCCA+CGG | - | chr2_4:55338261-55338280 | Msa0336070:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_4 | gene | 55337289 | 55338644 | 55337289 | ID=Msa0336070;Name=Msa0336070 |
| chr2_4 | mRNA | 55337289 | 55338644 | 55337289 | ID=Msa0336070-mRNA-1;Parent=Msa0336070;Name=Msa0336070-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0|0|0|1|1|1|3|0|220 |
| chr2_4 | exon | 55338322 | 55338644 | 55338322 | ID=Msa0336070-mRNA-1:exon:16784;Parent=Msa0336070-mRNA-1 |
| chr2_4 | exon | 55337626 | 55337749 | 55337626 | ID=Msa0336070-mRNA-1:exon:16783;Parent=Msa0336070-mRNA-1 |
| chr2_4 | exon | 55337289 | 55337504 | 55337289 | ID=Msa0336070-mRNA-1:exon:16782;Parent=Msa0336070-mRNA-1 |
| chr2_4 | CDS | 55338322 | 55338644 | 55338322 | ID=Msa0336070-mRNA-1:cds;Parent=Msa0336070-mRNA-1 |
| chr2_4 | CDS | 55337626 | 55337749 | 55337626 | ID=Msa0336070-mRNA-1:cds;Parent=Msa0336070-mRNA-1 |
| chr2_4 | CDS | 55337289 | 55337504 | 55337289 | ID=Msa0336070-mRNA-1:cds;Parent=Msa0336070-mRNA-1 |
| Gene Sequence |
| Protein sequence |
