AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0281190


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0281190 MtrunA17_Chr2g0295401 94.751 362 19 0 1 362 1 362 0.0 711
Msa0281190 MtrunA17_Chr4g0067711 74.790 357 89 1 1 357 1 356 0.0 573
Msa0281190 MtrunA17_Chr7g0272061 60.763 367 134 3 1 358 1 366 6.68e-168 473
Msa0281190 MtrunA17_Chr1g0192421 60.845 355 136 1 1 355 1 352 4.83e-165 465
Msa0281190 MtrunA17_Chr7g0249421 46.313 339 155 2 42 353 46 384 3.92e-103 313
Msa0281190 MtrunA17_Chr4g0022171 45.246 305 153 3 62 353 67 370 3.03e-98 299
Msa0281190 MtrunA17_Chr2g0324061 46.302 311 154 4 55 353 54 363 3.76e-98 299
Msa0281190 MtrunA17_Chr7g0221691 46.646 328 153 4 58 365 95 420 1.04e-96 295
Msa0281190 MtrunA17_Chr4g0004971 46.644 298 155 2 64 357 50 347 8.19e-93 281
Msa0281190 MtrunA17_Chr7g0243571 43.077 325 166 3 48 357 48 368 2.06e-91 281
Msa0281190 MtrunA17_Chr8g0342431 43.787 338 149 5 51 355 45 374 6.38e-91 278
Msa0281190 MtrunA17_Chr1g0151781 40.483 331 189 5 29 357 8 332 6.77e-75 235
Msa0281190 MtrunA17_Chr4g0066371 30.634 284 146 7 58 314 44 303 1.88e-30 120
Msa0281190 MtrunA17_Chr2g0286951 29.358 327 176 9 58 356 45 344 2.37e-30 120
Msa0281190 MtrunA17_Chr6g0486661 26.667 330 189 7 48 349 73 377 2.86e-29 119
Msa0281190 MtrunA17_Chr5g0396731 31.967 244 126 8 78 317 95 302 2.23e-25 105
Msa0281190 MtrunA17_Chr1g0150451 32.099 243 126 8 88 330 104 307 9.33e-25 103
Msa0281190 MtrunA17_Chr3g0136711 31.227 269 133 11 88 353 61 280 2.13e-24 101
Msa0281190 MtrunA17_Chr6g0483411 31.022 274 137 9 95 353 82 318 3.59e-24 101
Msa0281190 MtrunA17_Chr1g0212961 29.153 295 161 11 40 330 71 321 1.60e-23 100
Msa0281190 MtrunA17_Chr1g0194191 32.510 243 123 9 94 327 120 330 4.62e-21 93.6
Msa0281190 MtrunA17_Chr8g0360351 33.209 268 123 16 92 354 66 282 6.61e-21 91.7
Msa0281190 MtrunA17_Chr3g0112291 31.227 269 130 12 69 321 100 329 1.43e-20 92.0
Msa0281190 MtrunA17_Chr2g0279151 37.264 212 103 12 147 353 94 280 2.25e-20 90.1
Msa0281190 MtrunA17_Chr5g0407161 27.389 314 172 12 66 366 90 360 4.72e-20 90.5
Msa0281190 MtrunA17_Chr5g0435721 30.337 267 133 11 69 321 200 427 7.65e-20 90.9
Msa0281190 MtrunA17_Chr2g0317021 33.208 265 121 16 92 351 117 330 9.41e-20 89.0
Msa0281190 MtrunA17_Chr5g0426141 33.086 269 128 14 88 353 62 281 2.17e-19 87.0
Msa0281190 MtrunA17_Chr4g0050381 36.321 212 105 12 147 353 90 276 3.04e-19 86.7
Msa0281190 MtrunA17_Chr3g0126511 29.057 265 142 10 90 354 123 341 4.67e-19 87.4
Msa0281190 MtrunA17_Chr3g0138281 28.881 277 150 10 94 364 123 358 5.51e-19 87.4
Msa0281190 MtrunA17_Chr4g0065141 29.893 281 144 12 86 357 118 354 6.32e-19 87.4
Msa0281190 MtrunA17_Chr3g0115851 37.745 204 100 11 152 353 103 281 1.42e-18 84.7
Msa0281190 MtrunA17_Chr4g0070871 31.507 219 122 8 94 312 255 445 3.08e-18 85.9
Msa0281190 MtrunA17_Chr4g0051661 29.670 364 167 23 18 353 95 397 7.12e-18 84.3
Msa0281190 MtrunA17_Chr3g0135961 30.531 226 129 7 87 309 281 481 1.08e-17 84.3
Msa0281190 MtrunA17_Chr3g0144111 32.857 210 113 9 156 359 47 234 1.31e-17 81.6
Msa0281190 MtrunA17_Chr1g0158781 30.385 260 137 9 94 351 147 364 3.39e-17 82.4
Msa0281190 MtrunA17_Chr1g0171571 26.552 290 168 11 69 353 395 644 3.84e-17 83.2
Msa0281190 MtrunA17_Chr2g0293811 32.984 191 98 7 150 330 145 315 5.49e-17 81.6
Msa0281190 MtrunA17_Chr1g0150781 30.415 217 123 7 94 307 292 483 7.09e-17 82.0
Msa0281190 MtrunA17_Chr3g0105351 28.682 258 141 13 57 313 60 275 2.25e-16 79.0
Msa0281190 MtrunA17_Chr8g0389921 28.767 219 124 7 94 312 200 386 1.08e-15 78.2
Msa0281190 MtrunA17_Chr1g0153671 31.416 226 127 12 151 369 108 312 1.93e-14 74.3
Msa0281190 MtrunA17_Chr3g0136811 26.198 313 159 15 94 362 54 338 5.68e-14 72.4
Msa0281190 MtrunA17_Chr4g0001761 27.863 262 133 9 94 320 54 294 9.28e-14 71.6
Msa0281190 MtrunA17_Chr5g0430481 25.896 251 144 11 64 313 126 335 1.81e-13 70.9
Msa0281190 MtrunA17_Chr1g0150071 28.571 210 114 8 167 362 151 338 3.87e-13 70.1
Msa0281190 MtrunA17_Chr3g0133801 29.091 220 130 10 151 366 109 306 1.03e-12 68.9
Msa0281190 MtrunA17_Chr1g0213351 26.959 319 156 15 92 367 80 364 2.48e-12 67.8
Msa0281190 MtrunA17_Chr2g0295991 31.492 181 90 6 160 317 254 423 2.67e-12 67.8
Msa0281190 MtrunA17_Chr7g0250061 30.047 213 86 9 189 355 157 352 3.93e-12 67.0
Msa0281190 MtrunA17_Chr4g0067301 29.508 183 93 6 160 317 263 434 9.08e-12 66.2
Msa0281190 MtrunA17_Chr7g0256751 26.774 310 160 13 86 353 63 347 1.29e-11 65.5
Msa0281190 MtrunA17_Chr7g0238501 24.194 310 176 13 68 346 243 524 1.48e-11 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0281190 AT3G05640.2 58.592 355 141 2 1 354 1 350 1.57e-160 454
Msa0281190 AT3G05640.1 58.592 355 141 2 1 354 1 350 1.57e-160 454
Msa0281190 AT3G05640.3 58.592 355 141 2 1 354 1 350 1.57e-160 454
Msa0281190 AT5G27930.1 55.807 353 155 1 1 352 1 353 4.22e-156 444
Msa0281190 AT5G27930.2 55.807 353 155 1 1 352 1 353 4.22e-156 444
Msa0281190 AT3G16800.2 53.933 356 155 3 1 354 1 349 1.70e-142 408
Msa0281190 AT3G16800.1 53.933 356 155 3 1 354 1 349 1.70e-142 408
Msa0281190 AT3G16800.3 53.933 356 155 3 1 354 1 349 1.70e-142 408
Msa0281190 AT5G27930.3 55.482 301 133 1 1 300 1 301 1.45e-131 379
Msa0281190 AT3G16800.4 57.471 261 103 2 95 354 1 254 1.31e-108 318
Msa0281190 AT3G16800.6 57.471 261 103 2 95 354 1 254 1.31e-108 318
Msa0281190 AT3G02750.2 46.023 352 153 2 41 355 44 395 1.15e-105 320
Msa0281190 AT3G02750.1 46.023 352 153 2 41 355 44 395 1.15e-105 320
Msa0281190 AT5G36250.1 45.794 321 149 3 64 359 70 390 2.98e-102 309
Msa0281190 AT1G16220.1 47.840 324 149 4 51 354 54 377 6.11e-102 310
Msa0281190 AT1G79630.1 44.477 344 151 2 51 354 57 400 2.23e-99 304
Msa0281190 AT1G79630.8 44.477 344 151 2 51 354 53 396 2.75e-99 303
Msa0281190 AT5G36250.2 44.179 335 148 4 64 359 70 404 1.57e-98 300
Msa0281190 AT3G02750.3 41.860 387 153 3 41 355 44 430 5.48e-98 301
Msa0281190 AT4G03415.1 46.732 306 146 4 63 353 69 372 3.69e-97 297
Msa0281190 AT4G03415.3 46.732 306 146 4 63 353 69 372 3.69e-97 297
Msa0281190 AT4G03415.2 46.732 306 146 4 63 353 69 372 3.69e-97 297
Msa0281190 AT1G03590.1 45.048 313 159 4 52 353 52 362 3.08e-94 289
Msa0281190 AT5G01700.2 45.048 313 164 3 48 357 34 341 1.34e-90 277
Msa0281190 AT5G01700.1 46.939 294 148 3 67 357 4 292 6.51e-90 274
Msa0281190 AT1G79630.2 45.048 313 132 2 82 354 18 330 3.11e-89 275
Msa0281190 AT1G79630.7 45.048 313 132 2 82 354 18 330 3.11e-89 275
Msa0281190 AT5G36250.3 47.925 265 113 3 64 303 70 334 1.15e-86 266
Msa0281190 AT1G79630.6 54.028 211 97 0 144 354 80 290 2.57e-78 246
Msa0281190 AT1G79630.3 54.028 211 97 0 144 354 80 290 2.57e-78 246
Msa0281190 AT1G79630.4 54.028 211 97 0 144 354 80 290 2.57e-78 246
Msa0281190 AT1G79630.5 54.028 211 97 0 144 354 80 290 2.57e-78 246
Msa0281190 AT4G32950.1 39.650 343 177 7 22 359 8 325 1.54e-77 242
Msa0281190 AT3G16800.5 47.660 235 111 4 1 233 1 225 9.95e-76 234
Msa0281190 AT5G26010.1 42.282 298 159 4 59 355 41 326 1.53e-73 232
Msa0281190 AT4G32950.2 39.262 298 154 6 22 317 8 280 2.54e-62 201
Msa0281190 AT2G20050.1 28.662 314 172 8 48 334 92 380 2.20e-30 123
Msa0281190 AT2G20050.2 28.662 314 172 8 48 334 92 380 2.21e-30 123
Msa0281190 AT3G06270.1 28.846 312 156 9 58 336 46 324 5.15e-30 118
Msa0281190 AT4G31750.2 29.787 282 151 11 85 365 56 291 2.38e-25 104
Msa0281190 AT5G10740.1 31.955 266 135 10 88 353 60 279 2.60e-25 105
Msa0281190 AT5G10740.2 31.955 266 135 10 88 353 60 279 2.60e-25 105
Msa0281190 AT4G31750.1 29.787 282 151 11 85 365 56 291 2.86e-25 104
Msa0281190 AT4G31750.3 29.787 282 151 11 85 365 56 291 2.86e-25 104
Msa0281190 AT1G07430.1 34.025 241 107 10 94 320 159 361 2.17e-24 103
Msa0281190 AT5G24940.1 30.075 266 140 9 88 353 60 279 5.60e-23 100
Msa0281190 AT5G59220.1 34.052 232 114 11 93 318 149 347 8.11e-23 99.4
Msa0281190 AT4G28400.3 33.113 302 144 19 58 354 13 261 1.94e-22 95.5
Msa0281190 AT1G43900.1 31.250 240 123 10 90 328 152 350 3.74e-22 97.1
Msa0281190 AT2G20630.1 33.333 270 128 15 88 354 59 279 4.01e-22 95.1
Msa0281190 AT4G28400.1 32.781 302 145 19 58 354 35 283 4.61e-22 95.1
Msa0281190 AT1G18030.1 30.292 274 139 9 95 353 112 348 1.94e-21 94.7
Msa0281190 AT2G20630.2 33.582 268 126 15 89 353 60 278 2.53e-21 93.2
Msa0281190 AT3G51470.2 27.575 301 157 11 82 366 43 298 8.70e-21 92.0
Msa0281190 AT3G51470.1 27.575 301 157 11 82 366 87 342 1.08e-20 92.4
Msa0281190 AT3G17250.1 28.772 285 152 11 94 367 160 404 1.83e-20 92.4
Msa0281190 AT2G33700.1 30.142 282 129 12 94 361 125 352 3.27e-20 91.3
Msa0281190 AT1G48040.1 31.338 284 148 11 94 367 118 364 6.02e-20 90.5
Msa0281190 AT5G53140.1 29.046 241 132 9 90 330 130 331 6.49e-20 90.9
Msa0281190 AT5G53140.2 29.046 241 132 9 90 330 130 331 6.49e-20 90.9
Msa0281190 AT3G11410.1 28.854 253 120 9 94 324 139 353 8.47e-20 90.5
Msa0281190 AT2G25620.1 30.282 284 139 13 94 363 130 368 1.09e-19 90.1
Msa0281190 AT2G25620.2 30.282 284 139 13 94 363 130 368 1.09e-19 90.1
Msa0281190 AT1G22280.3 36.893 206 103 12 150 353 106 286 4.19e-19 87.0
Msa0281190 AT2G29380.1 32.636 239 108 12 94 317 114 314 4.27e-19 87.8
Msa0281190 AT1G22280.1 36.893 206 103 12 150 353 100 280 4.99e-19 86.7
Msa0281190 AT1G18030.2 31.364 220 109 7 95 303 112 300 1.42e-18 85.5
Msa0281190 AT3G62260.3 30.189 265 146 9 94 353 29 259 1.52e-18 85.5
Msa0281190 AT3G62260.1 30.189 265 146 9 94 353 118 348 3.48e-18 85.5
Msa0281190 AT3G62260.2 30.189 265 146 9 94 353 119 349 3.82e-18 85.5
Msa0281190 AT3G15260.2 32.576 264 128 15 92 353 73 288 3.27e-17 81.6
Msa0281190 AT3G15260.1 32.576 264 128 15 92 353 73 288 3.27e-17 81.6
Msa0281190 AT1G34750.2 35.784 204 104 11 150 351 101 279 3.34e-17 81.3
Msa0281190 AT1G34750.1 35.784 204 104 11 150 351 101 279 3.34e-17 81.3
Msa0281190 AT1G34750.3 35.784 204 104 11 150 351 101 279 3.34e-17 81.3
Msa0281190 AT5G51760.2 37.415 147 74 5 175 320 200 329 6.13e-17 82.0
Msa0281190 AT1G68410.4 30.545 275 144 14 95 358 76 314 6.63e-17 82.0
Msa0281190 AT1G68410.3 30.545 275 144 14 95 358 76 314 6.63e-17 82.0
Msa0281190 AT1G68410.1 30.545 275 144 14 95 358 76 314 6.63e-17 82.0
Msa0281190 AT1G68410.2 30.545 275 144 14 95 358 76 314 6.63e-17 82.0
Msa0281190 AT5G51760.1 37.415 147 74 5 175 320 230 359 7.49e-17 82.0
Msa0281190 AT1G67820.2 27.444 266 147 10 59 321 83 305 1.81e-16 80.5
Msa0281190 AT1G67820.1 27.444 266 147 10 59 321 119 341 2.79e-16 80.5
Msa0281190 AT1G72770.4 28.879 232 127 8 94 312 240 446 1.18e-15 78.6
Msa0281190 AT1G72770.1 28.879 232 127 8 94 312 240 446 1.18e-15 78.6
Msa0281190 AT1G72770.3 28.879 232 127 8 94 312 240 446 1.18e-15 78.6
Msa0281190 AT4G26080.1 29.565 230 131 9 84 313 164 362 1.42e-15 78.2
Msa0281190 AT5G57050.2 29.439 214 122 6 94 307 122 306 4.90e-15 76.3
Msa0281190 AT5G57050.1 29.439 214 122 6 94 307 162 346 6.28e-15 76.3
Msa0281190 AT1G07160.1 26.400 250 146 8 64 313 125 336 9.92e-15 75.1
Msa0281190 AT4G28400.2 32.271 251 119 17 58 303 35 239 1.08e-14 73.6
Msa0281190 AT2G40860.1 23.986 296 175 11 65 353 396 648 1.83e-14 75.1
Msa0281190 AT2G40860.2 24.231 260 153 8 65 317 396 618 2.06e-14 75.1
Msa0281190 AT2G40860.4 23.986 296 175 11 65 353 298 550 3.34e-14 74.3
Msa0281190 AT4G31860.1 26.452 310 157 13 94 359 54 336 4.62e-14 73.2
Msa0281190 AT1G47380.1 29.825 285 146 16 94 366 66 308 6.46e-14 73.2
Msa0281190 AT1G17550.1 26.957 230 129 8 94 309 239 443 1.35e-13 72.4
Msa0281190 AT1G17550.2 26.957 230 129 8 94 309 239 443 1.35e-13 72.4
Msa0281190 AT2G34740.1 26.460 291 159 13 68 353 94 334 2.57e-13 70.9
Msa0281190 AT1G34750.4 36.538 156 79 9 150 303 101 238 3.44e-13 69.3
Msa0281190 AT4G31860.3 26.923 260 134 10 94 318 54 292 4.66e-13 69.3
Msa0281190 AT3G17090.1 26.740 273 149 12 92 339 84 330 5.87e-12 67.0
Msa0281190 AT3G55050.1 28.767 219 107 9 176 355 152 360 6.48e-12 66.6
Msa0281190 AT3G55050.2 28.767 219 107 9 176 355 152 360 6.48e-12 66.6
Msa0281190 AT3G16560.3 28.804 184 101 6 160 324 262 434 3.20e-11 65.1
Msa0281190 AT3G16560.1 27.315 216 115 8 160 349 262 461 3.70e-11 64.7
Msa0281190 AT3G16560.4 27.315 216 115 8 160 349 262 461 3.70e-11 64.7
Msa0281190 AT3G16560.2 27.315 216 115 8 160 349 262 461 3.70e-11 64.7
Msa0281190 AT3G51370.2 27.778 216 109 9 176 353 62 268 4.36e-11 63.5
Msa0281190 AT3G51370.1 29.255 188 100 7 176 339 147 325 4.55e-11 64.3
Msa0281190 AT3G51370.3 29.255 188 100 7 176 339 147 325 4.55e-11 64.3

Find 61 sgRNAs with CRISPR-Local

Find 203 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCCTGTGTGTTCACTAAAA+AGG 0.141469 2_3:-16438276 Msa0281190:CDS
TGTTTCTGATGCTAGGAATT+TGG 0.210278 2_3:-16437606 Msa0281190:intron
ATCAGGATTGTCTAATTGTT+TGG 0.256227 2_3:-16438238 Msa0281190:CDS
GTATATATACTTGGTAAATT+AGG 0.264086 2_3:+16436399 None:intergenic
TTGCAATTGGCAAGAAAATC+TGG 0.298782 2_3:-16437481 Msa0281190:CDS
ATCTCCATATATATGATATA+TGG 0.320403 2_3:-16437413 Msa0281190:CDS
GCTTCCATATATCATATATA+TGG 0.320675 2_3:+16437409 None:intergenic
TTGAATAAAGATAAGAGTTA+TGG 0.337394 2_3:-16438410 Msa0281190:CDS
ACAAAGAAAACTCACTACTA+TGG 0.347117 2_3:-16435939 Msa0281190:CDS
TCAGGATTGTCTAATTGTTT+GGG 0.362906 2_3:-16438237 Msa0281190:CDS
GAAATGTTGTTGAATTCATC+TGG 0.382145 2_3:-16438329 Msa0281190:CDS
AACCAGGAGTATATAGGGTT+TGG 0.387253 2_3:-16436057 Msa0281190:CDS
AGTCCTGGACTCTTACCATT+TGG 0.399751 2_3:+16436031 None:intergenic
AAGTCAGTGGTAAGTTGAAT+AGG 0.407016 2_3:+16436426 None:intergenic
GACTTTCGCTGCAATTGATC+AGG 0.414859 2_3:-16437373 Msa0281190:CDS
CTAGCAATATCAAGAGCATT+TGG 0.417294 2_3:-16436010 Msa0281190:CDS
TTTCGATGGACATGGACCTT+GGG 0.429324 2_3:-16437553 Msa0281190:CDS
AGATGAACCAGGAGTATATA+GGG 0.437885 2_3:-16436062 Msa0281190:CDS
CAGGATCTAAAGCAGCATAC+TGG 0.443167 2_3:-16437354 Msa0281190:CDS
GATTATTGTGTAAAAGACTT+TGG 0.443685 2_3:-16435986 Msa0281190:CDS
AGCTTTGACAGTTATCAAAC+AGG 0.453241 2_3:-16437304 Msa0281190:intron
TAAAATGTGCCACACATGAA+TGG 0.459807 2_3:-16435092 Msa0281190:CDS
AAGATGAACCAGGAGTATAT+AGG 0.462389 2_3:-16436063 Msa0281190:CDS
GTTTGAGGGACATGTTGTGA+AGG 0.469516 2_3:+16435003 None:intergenic
GCTCTTGATATTGCTAGTCC+TGG 0.470320 2_3:+16436016 None:intergenic
CACACAAAATAATGTCCTCT+TGG 0.472335 2_3:+16437580 None:intergenic
GAAATAAAATTGACAAGAGA+TGG 0.496598 2_3:+16438446 None:intergenic
AGCTGTAGTTCCACTTTGAA+AGG 0.497677 2_3:+16437323 None:intergenic
AGATGAAGCAGAGCGCATAA+TGG 0.500000 2_3:-16436113 Msa0281190:CDS
GGGTCAGAAAGGATTCAATC+AGG 0.508777 2_3:-16438255 Msa0281190:CDS
TTGTCATCTTAGCAACTGAT+GGG 0.512208 2_3:-16435910 Msa0281190:CDS
TGAGGGACATGTTGTGAAGG+GGG 0.519747 2_3:+16435006 None:intergenic
AGCGCATAATGGAATCAAAC+GGG 0.520229 2_3:-16436102 Msa0281190:CDS
TTTGAGGGACATGTTGTGAA+GGG 0.520918 2_3:+16435004 None:intergenic
CTGTTTCCATCTTAAAACTC+AGG 0.525949 2_3:+16437442 None:intergenic
CTTAAGTTTCCATTCATGTG+TGG 0.531187 2_3:+16435083 None:intergenic
TTAGCAACCACTTCAGAGAA+TGG 0.533579 2_3:-16436459 Msa0281190:CDS
ATCCAAACCCTATATACTCC+TGG 0.534879 2_3:+16436055 None:intergenic
GAATGGAAACTTAAGAGAAA+AGG 0.535637 2_3:-16435075 Msa0281190:CDS
TTTGTCATCTTAGCAACTGA+TGG 0.535722 2_3:-16435911 Msa0281190:CDS
CAGTGTGCCATTCTCTGAAG+TGG 0.536531 2_3:+16436452 None:intergenic
TGCAGCGAAAGTCTTTATGT+AGG 0.541790 2_3:+16437383 None:intergenic
TATAGGGTTTGGATGCCAAA+TGG 0.542128 2_3:-16436046 Msa0281190:CDS
GAGCGCATAATGGAATCAAA+CGG 0.547027 2_3:-16436103 Msa0281190:CDS
TTGAGGGACATGTTGTGAAG+GGG 0.547462 2_3:+16435005 None:intergenic
ATGCCAAATGGTAAGAGTCC+AGG 0.549842 2_3:-16436034 Msa0281190:CDS
GGAATTGATTCCTTTCAAAG+TGG 0.563303 2_3:-16437333 Msa0281190:CDS
TATCTCATAATAGCAAATGT+TGG 0.567118 2_3:-16436498 Msa0281190:CDS
TAAAGATAAGAGTTATGGAA+AGG 0.573562 2_3:-16438405 Msa0281190:CDS
GGATTGTCTAATTGTTTGGG+AGG 0.576634 2_3:-16438234 Msa0281190:intron
ATCTTAAAACTCAGGTCAAG+TGG 0.586699 2_3:+16437450 None:intergenic
AAGGAAAGTTGTGGAAGCAA+TGG 0.589609 2_3:-16438372 Msa0281190:CDS
TTCGATGGACATGGACCTTG+GGG 0.590693 2_3:-16437552 Msa0281190:CDS
TAAATTAGGCTTCAAGTCAG+TGG 0.603983 2_3:+16436413 None:intergenic
TTCGATACAAAATGTCCCCA+AGG 0.608737 2_3:+16437537 None:intergenic
ATGGAAAGGATGATGATGCA+AGG 0.614043 2_3:-16438391 Msa0281190:CDS
TGATGATGCAAGGAAAGTTG+TGG 0.631695 2_3:-16438381 Msa0281190:CDS
TGTCATCTTAGCAACTGATG+GGG 0.654993 2_3:-16435909 Msa0281190:intron
AAGAGATGGAATAGAAACCA+TGG 0.656028 2_3:+16438460 None:intergenic
AGTTGTGGAAGCAATGGCAA+AGG 0.656682 2_3:-16438366 Msa0281190:CDS
CTAGGAATTTGGATGCCAAG+AGG 0.693608 2_3:-16437595 Msa0281190:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GAATAGAATATTTAATCATT+AGG + chr2_3:16435689-16435708 None:intergenic 15.0%
!!! TTTTCGAAGAAAAAAAAAAA+AGG - chr2_3:16437607-16437626 Msa0281190:intron 15.0%
!! TTGAATAAAGATAAGAGTTA+TGG - chr2_3:16435032-16435051 Msa0281190:CDS 20.0%
!! AATTTGGAAACTGAATATTT+AGG + chr2_3:16435238-16435257 None:intergenic 20.0%
!! AAATCATAGACAATGAAATT+TGG + chr2_3:16435254-16435273 None:intergenic 20.0%
!!! TAGCATTTTTTGAATCAATT+AGG - chr2_3:16435514-16435533 Msa0281190:intron 20.0%
!! ATCTCCATATATATGATATA+TGG - chr2_3:16436029-16436048 Msa0281190:CDS 20.0%
!! AAATTATTCATTGTTGAGTA+TGG - chr2_3:16436364-16436383 Msa0281190:intron 20.0%
!!! TTTTTTGTTATGCAATACTT+AGG + chr2_3:16436566-16436585 None:intergenic 20.0%
!! AAACAATTAATCATAGTGTT+CGG + chr2_3:16436633-16436652 None:intergenic 20.0%
!! TATTTATTCAAAACTAGCTA+CGG + chr2_3:16436776-16436795 None:intergenic 20.0%
!! GTATATATACTTGGTAAATT+AGG + chr2_3:16437046-16437065 None:intergenic 20.0%
!!! GATATTAATCTGAGATTTTA+TGG + chr2_3:16437134-16437153 None:intergenic 20.0%
!!! CAATTAGTTTGATAATATCA+CGG + chr2_3:16437801-16437820 None:intergenic 20.0%
!! TGATATTATCAAACTAATTG+TGG - chr2_3:16437801-16437820 Msa0281190:intron 20.0%
! GAAATAAAATTGACAAGAGA+TGG + chr2_3:16434999-16435018 None:intergenic 25.0%
! TAAAGATAAGAGTTATGGAA+AGG - chr2_3:16435037-16435056 Msa0281190:CDS 25.0%
!!! TCTATGATTTTAGCTCTATT+TGG - chr2_3:16435264-16435283 Msa0281190:intron 25.0%
! TAACTGATGTGAAAATAGTT+TGG + chr2_3:16435379-16435398 None:intergenic 25.0%
!!! TATGATATTGTTTTGCAAAG+CGG + chr2_3:16435572-16435591 None:intergenic 25.0%
!! TATGCTAATCAAACTTTTCA+AGG + chr2_3:16435790-16435809 None:intergenic 25.0%
! GCTTCCATATATCATATATA+TGG + chr2_3:16436036-16436055 None:intergenic 25.0%
! AGATACAATATCAGATGTTA+CGG + chr2_3:16436172-16436191 None:intergenic 25.0%
!! TATGGATTATATTCACTGAT+AGG - chr2_3:16436382-16436401 Msa0281190:intron 25.0%
! TTGAAACTCAACATACTAAT+AGG + chr2_3:16436490-16436509 None:intergenic 25.0%
!! AGTTAAGTATGTTTTCCTTA+AGG - chr2_3:16436712-16436731 Msa0281190:intron 25.0%
! AACATCAATAATACTCACTT+AGG + chr2_3:16436914-16436933 None:intergenic 25.0%
! TGAGTATTATTGATGTTTCA+GGG - chr2_3:16436917-16436936 Msa0281190:intron 25.0%
! TATCTCATAATAGCAAATGT+TGG - chr2_3:16436944-16436963 Msa0281190:intron 25.0%
!! ATAGAGAGAGTATATATACT+TGG + chr2_3:16437055-16437074 None:intergenic 25.0%
! GATTATTGTGTAAAAGACTT+TGG - chr2_3:16437456-16437475 Msa0281190:CDS 25.0%
! TTAAGTCATTGAAATGTGAA+AGG + chr2_3:16437573-16437592 None:intergenic 25.0%
!! TGTTAACAAAAGCTACATTT+TGG - chr2_3:16437752-16437771 Msa0281190:intron 25.0%
! ACCAAATTATAGCACAATTT+AGG - chr2_3:16437925-16437944 Msa0281190:intron 25.0%
! AAATTATAGCACAATTTAGG+CGG - chr2_3:16437928-16437947 Msa0281190:intron 25.0%
! AGGTCAAAGAGTTAAAATAT+CGG + chr2_3:16438061-16438080 None:intergenic 25.0%
!! AAACGGTTTCTTATTTCTTT+GGG - chr2_3:16438117-16438136 Msa0281190:intron 25.0%
! ATTATGTTAATAGGAGGAAT+AGG + chr2_3:16438193-16438212 None:intergenic 25.0%
! ATGCCTTCAATTATGTTAAT+AGG + chr2_3:16438202-16438221 None:intergenic 25.0%
GAAATGTTGTTGAATTCATC+TGG - chr2_3:16435113-16435132 Msa0281190:CDS 30.0%
GGAAAAATTATTGGACTTGT+CGG + chr2_3:16435150-16435169 None:intergenic 30.0%
GAACACACAGGAAAAATTAT+TGG + chr2_3:16435159-16435178 None:intergenic 30.0%
ATCAGGATTGTCTAATTGTT+TGG - chr2_3:16435204-16435223 Msa0281190:intron 30.0%
TCAGGATTGTCTAATTGTTT+GGG - chr2_3:16435205-16435224 Msa0281190:intron 30.0%
!! GTTATTTTCATAAGCTCTCT+AGG + chr2_3:16435423-16435442 None:intergenic 30.0%
!! ATGATATTGTTTTGCAAAGC+GGG + chr2_3:16435571-16435590 None:intergenic 30.0%
ATTATCTTGTTCTGCATAAC+TGG - chr2_3:16435756-16435775 Msa0281190:intron 30.0%
TTATCTTGTTCTGCATAACT+GGG - chr2_3:16435757-16435776 Msa0281190:intron 30.0%
! AAAAAGTTGGCAGCATTTTT+CGG + chr2_3:16435937-16435956 None:intergenic 30.0%
CAATTGCAAAGCAAAAAAGT+TGG + chr2_3:16435950-16435969 None:intergenic 30.0%
!!! CAACTTTTTTGCTTTGCAAT+TGG - chr2_3:16435948-16435967 Msa0281190:CDS 30.0%
TTCTCTGCTGTATCTTAAAA+TGG - chr2_3:16436215-16436234 Msa0281190:intron 30.0%
TGCTGTATCTTAAAATGGTT+TGG - chr2_3:16436220-16436239 Msa0281190:intron 30.0%
! ATTGACTTTGCACAATGATA+AGG + chr2_3:16436327-16436346 None:intergenic 30.0%
TATGTTGAGTTTCAACTATG+AGG - chr2_3:16436495-16436514 Msa0281190:CDS 30.0%
ATGTTGAGTTTCAACTATGA+GGG - chr2_3:16436496-16436515 Msa0281190:CDS 30.0%
! AAAGGCCATACAATTTTTCT+GGG - chr2_3:16436833-16436852 Msa0281190:intron 30.0%
TGCAAAAAAGTAGTAGAGAA+CGG + chr2_3:16436879-16436898 None:intergenic 30.0%
GTGAGTATTATTGATGTTTC+AGG - chr2_3:16436916-16436935 Msa0281190:intron 30.0%
! AAATCAGTCTAAAGCTATCT+CGG + chr2_3:16437156-16437175 None:intergenic 30.0%
ATCGTCCAATATCAAAGTAA+TGG - chr2_3:16437194-16437213 Msa0281190:intron 30.0%
ACAAAGAAAACTCACTACTA+TGG - chr2_3:16437503-16437522 Msa0281190:CDS 30.0%
TGAAAATGTTTCGTAAACAC+AGG - chr2_3:16437656-16437675 Msa0281190:intron 30.0%
AGTGGCAATGAAATGATATT+AGG - chr2_3:16437872-16437891 Msa0281190:intron 30.0%
GCCTAAATTGTGCTATAATT+TGG + chr2_3:16437929-16437948 None:intergenic 30.0%
! TTAGTATTTTCTCCTCAACA+GGG - chr2_3:16438027-16438046 Msa0281190:intron 30.0%
! CAAACGGTTTCTTATTTCTT+TGG - chr2_3:16438116-16438135 Msa0281190:intron 30.0%
! AACGGTTTCTTATTTCTTTG+GGG - chr2_3:16438118-16438137 Msa0281190:intron 30.0%
CCTTCAATTATGTTAATAGG+AGG + chr2_3:16438199-16438218 None:intergenic 30.0%
CCTCCTATTAACATAATTGA+AGG - chr2_3:16438196-16438215 Msa0281190:intron 30.0%
GAATGGAAACTTAAGAGAAA+AGG - chr2_3:16438367-16438386 Msa0281190:CDS 30.0%
TTCCTGTGTGTTCACTAAAA+AGG - chr2_3:16435166-16435185 Msa0281190:CDS 35.0%
TCCTGTGTGTTCACTAAAAA+GGG - chr2_3:16435167-16435186 Msa0281190:CDS 35.0%
TTCACTAAAAAGGGTCAGAA+AGG - chr2_3:16435176-16435195 Msa0281190:CDS 35.0%
!! TCTACATTGTTTCTGATGCT+AGG - chr2_3:16435829-16435848 Msa0281190:intron 35.0%
! TGTTTCTGATGCTAGGAATT+TGG - chr2_3:16435836-16435855 Msa0281190:intron 35.0%
CACACAAAATAATGTCCTCT+TGG + chr2_3:16435865-16435884 None:intergenic 35.0%
!! CAAGAGGACATTATTTTGTG+TGG - chr2_3:16435863-16435882 Msa0281190:intron 35.0%
! ATTTTGTGTGGAGTTTTCGA+TGG - chr2_3:16435875-16435894 Msa0281190:intron 35.0%
! GGGACATTTTGTATCGAAAA+GGG - chr2_3:16435910-16435929 Msa0281190:CDS 35.0%
TTGCAATTGGCAAGAAAATC+TGG - chr2_3:16435961-16435980 Msa0281190:CDS 35.0%
ATCTTAAAACTCAGGTCAAG+TGG + chr2_3:16435995-16436014 None:intergenic 35.0%
!!! ACTTGACCTGAGTTTTAAGA+TGG - chr2_3:16435994-16436013 Msa0281190:CDS 35.0%
CTGTTTCCATCTTAAAACTC+AGG + chr2_3:16436003-16436022 None:intergenic 35.0%
! GGAATTGATTCCTTTCAAAG+TGG - chr2_3:16436109-16436128 Msa0281190:CDS 35.0%
! AGCTTTGACAGTTATCAAAC+AGG - chr2_3:16436138-16436157 Msa0281190:intron 35.0%
ATGCAAACCTTATCCTTTGT+AGG - chr2_3:16436258-16436277 Msa0281190:intron 35.0%
TGAACTTGTAACCAACAAGA+AGG - chr2_3:16436295-16436314 Msa0281190:intron 35.0%
GAACTTGTAACCAACAAGAA+GGG - chr2_3:16436296-16436315 Msa0281190:intron 35.0%
GGATTATATTCACTGATAGG+TGG - chr2_3:16436385-16436404 Msa0281190:intron 35.0%
TACTAATAGGTCAGTGATAG+CGG + chr2_3:16436477-16436496 None:intergenic 35.0%
AGTTTCAACTATGAGGGTAA+GGG - chr2_3:16436502-16436521 Msa0281190:CDS 35.0%
! TGTTGATTGATGACATTGCT+TGG - chr2_3:16436810-16436829 Msa0281190:intron 35.0%
! ATTGATGACATTGCTTGGAA+AGG - chr2_3:16436815-16436834 Msa0281190:intron 35.0%
! GAAAGGCCATACAATTTTTC+TGG - chr2_3:16436832-16436851 Msa0281190:intron 35.0%
! AAGGCCATACAATTTTTCTG+GGG - chr2_3:16436834-16436853 Msa0281190:intron 35.0%
ATGTCCCCAGAAAAATTGTA+TGG + chr2_3:16436841-16436860 None:intergenic 35.0%
! AAGTCAGTGGTAAGTTGAAT+AGG + chr2_3:16437019-16437038 None:intergenic 35.0%
TAAATTAGGCTTCAAGTCAG+TGG + chr2_3:16437032-16437051 None:intergenic 35.0%
TAACGCAGATCTTTATGTGA+GGG + chr2_3:16437089-16437108 None:intergenic 35.0%
!! GAGATAGCTTTAGACTGATT+TGG - chr2_3:16437155-16437174 Msa0281190:intron 35.0%
CTCAGCCATTACTTTGATAT+TGG + chr2_3:16437202-16437221 None:intergenic 35.0%
!! GTAACTGCGTCTTTTGTTTA+CGG - chr2_3:16437237-16437256 Msa0281190:intron 35.0%
!!! AAACGGGAGAGTATTTTGTA+TGG - chr2_3:16437356-16437375 Msa0281190:CDS 35.0%
! TTTTGTATGGAAGATGAACC+AGG - chr2_3:16437369-16437388 Msa0281190:CDS 35.0%
! AAGATGAACCAGGAGTATAT+AGG - chr2_3:16437379-16437398 Msa0281190:CDS 35.0%
! AGATGAACCAGGAGTATATA+GGG - chr2_3:16437380-16437399 Msa0281190:CDS 35.0%
!! CTAGCAATATCAAGAGCATT+TGG - chr2_3:16437432-16437451 Msa0281190:CDS 35.0%
! AGTTTTCTTTGTGTCACATC+TGG + chr2_3:16437495-16437514 None:intergenic 35.0%
TTTGTCATCTTAGCAACTGA+TGG - chr2_3:16437531-16437550 Msa0281190:CDS 35.0%
TTGTCATCTTAGCAACTGAT+GGG - chr2_3:16437532-16437551 Msa0281190:CDS 35.0%
AATCCAAACATGCATTGAGT+CGG + chr2_3:16437694-16437713 None:intergenic 35.0%
TCAATGCATGTTTGGATTGA+CGG - chr2_3:16437696-16437715 Msa0281190:intron 35.0%
CATGTATGACTCTATTCATC+GGG + chr2_3:16437840-16437859 None:intergenic 35.0%
GCATGTATGACTCTATTCAT+CGG + chr2_3:16437841-16437860 None:intergenic 35.0%
TGAATAGAGTCATACATGCT+AGG - chr2_3:16437842-16437861 Msa0281190:intron 35.0%
CTTTGATCATCCATATGTGT+AGG + chr2_3:16437968-16437987 None:intergenic 35.0%
! GTTAGTATTTTCTCCTCAAC+AGG - chr2_3:16438026-16438045 Msa0281190:intron 35.0%
TCTCAACTCGTTTGAACTAA+AGG + chr2_3:16438081-16438100 None:intergenic 35.0%
ATAAGAAACCGTTTGATCGA+GGG + chr2_3:16438111-16438130 None:intergenic 35.0%
AATAAGAAACCGTTTGATCG+AGG + chr2_3:16438112-16438131 None:intergenic 35.0%
!! TTTCTGCTTGTTTTCATCTC+AGG - chr2_3:16438246-16438265 Msa0281190:CDS 35.0%
!! CTTGTTTTCATCTCAGGTAT+GGG - chr2_3:16438252-16438271 Msa0281190:CDS 35.0%
! AATTTTCATAGCTGCTTGGT+TGG + chr2_3:16438287-16438306 None:intergenic 35.0%
! CAACAATTTTCATAGCTGCT+TGG + chr2_3:16438291-16438310 None:intergenic 35.0%
ATAGAGAAAAAGCAGCTGAT+AGG - chr2_3:16438323-16438342 Msa0281190:CDS 35.0%
TAAAATGTGCCACACATGAA+TGG - chr2_3:16438350-16438369 Msa0281190:CDS 35.0%
CTTAAGTTTCCATTCATGTG+TGG + chr2_3:16438362-16438381 None:intergenic 35.0%
! CAACAACTTTTGTGGTTTGA+GGG + chr2_3:16438456-16438475 None:intergenic 35.0%
! TCAACAACTTTTGTGGTTTG+AGG + chr2_3:16438457-16438476 None:intergenic 35.0%
! ATGGAAAGGATGATGATGCA+AGG - chr2_3:16435051-16435070 Msa0281190:CDS 40.0%
! TGATGATGCAAGGAAAGTTG+TGG - chr2_3:16435061-16435080 Msa0281190:CDS 40.0%
AAGGAAAGTTGTGGAAGCAA+TGG - chr2_3:16435070-16435089 Msa0281190:CDS 40.0%
!! ACCCTTTTTAGTGAACACAC+AGG + chr2_3:16435171-16435190 None:intergenic 40.0%
GGATTGTCTAATTGTTTGGG+AGG - chr2_3:16435208-16435227 Msa0281190:intron 40.0%
CCAATTCAAGCAAACCCTTT+CGG - chr2_3:16435624-16435643 Msa0281190:intron 40.0%
! CACCGCAAAACTAACTTGTA+CGG - chr2_3:16435654-16435673 Msa0281190:intron 40.0%
!!! TGCCGTACAAGTTAGTTTTG+CGG + chr2_3:16435659-16435678 None:intergenic 40.0%
TTCGATACAAAATGTCCCCA+AGG + chr2_3:16435908-16435927 None:intergenic 40.0%
! GGGGACATTTTGTATCGAAA+AGG - chr2_3:16435909-16435928 Msa0281190:intron 40.0%
TGCAGCGAAAGTCTTTATGT+AGG + chr2_3:16436062-16436081 None:intergenic 40.0%
AGCTGTAGTTCCACTTTGAA+AGG + chr2_3:16436122-16436141 None:intergenic 40.0%
TAAGGTTACTCCCTTCTTGT+TGG + chr2_3:16436309-16436328 None:intergenic 40.0%
AAATCTCACTGAGCATAGCT+AGG - chr2_3:16436438-16436457 Msa0281190:CDS 40.0%
ACTAATAGGTCAGTGATAGC+GGG + chr2_3:16436476-16436495 None:intergenic 40.0%
GAGTTTCAACTATGAGGGTA+AGG - chr2_3:16436501-16436520 Msa0281190:CDS 40.0%
ACGAGAACGACTAACTCTAA+AGG + chr2_3:16436686-16436705 None:intergenic 40.0%
! AGTATGTTTTCCTTAAGGCC+TGG - chr2_3:16436717-16436736 Msa0281190:intron 40.0%
TTAGCAACCACTTCAGAGAA+TGG - chr2_3:16436983-16437002 Msa0281190:intron 40.0%
GTAACGCAGATCTTTATGTG+AGG + chr2_3:16437090-16437109 None:intergenic 40.0%
! GAGCGCATAATGGAATCAAA+CGG - chr2_3:16437339-16437358 Msa0281190:CDS 40.0%
! AGCGCATAATGGAATCAAAC+GGG - chr2_3:16437340-16437359 Msa0281190:CDS 40.0%
! AACCAGGAGTATATAGGGTT+TGG - chr2_3:16437385-16437404 Msa0281190:CDS 40.0%
ATCCAAACCCTATATACTCC+TGG + chr2_3:16437390-16437409 None:intergenic 40.0%
TATAGGGTTTGGATGCCAAA+TGG - chr2_3:16437396-16437415 Msa0281190:CDS 40.0%
TGTCATCTTAGCAACTGATG+GGG - chr2_3:16437533-16437552 Msa0281190:CDS 40.0%
! AAACCGACTCAATGCATGTT+TGG - chr2_3:16437688-16437707 Msa0281190:intron 40.0%
CTATTCATCGGGTACATGTT+TGG + chr2_3:16437829-16437848 None:intergenic 40.0%
TAGAGTCATACATGCTAGGT+TGG - chr2_3:16437846-16437865 Msa0281190:intron 40.0%
!! TACATGCTAGGTTGGTTAAG+TGG - chr2_3:16437854-16437873 Msa0281190:intron 40.0%
TAGGTCATGTGATCGTTTAG+AGG - chr2_3:16437891-16437910 Msa0281190:intron 40.0%
ATAGCACAATTTAGGCGGTT+CGG - chr2_3:16437933-16437952 Msa0281190:intron 40.0%
TCCATATGTGTAGGTCACAT+TGG + chr2_3:16437959-16437978 None:intergenic 40.0%
ATACTCAACCCTCGATCAAA+CGG - chr2_3:16438100-16438119 Msa0281190:intron 40.0%
!! GCTTGTTTTCATCTCAGGTA+TGG - chr2_3:16438251-16438270 Msa0281190:CDS 40.0%
TTTGAGGGACATGTTGTGAA+GGG + chr2_3:16438441-16438460 None:intergenic 40.0%
AGTTGTGGAAGCAATGGCAA+AGG - chr2_3:16435076-16435095 Msa0281190:CDS 45.0%
GGGTCAGAAAGGATTCAATC+AGG - chr2_3:16435187-16435206 Msa0281190:intron 45.0%
! CCGAAAGGGTTTGCTTGAAT+TGG + chr2_3:16435627-16435646 None:intergenic 45.0%
TCTCTGAGCTATGTGTGACT+TGG - chr2_3:16435717-16435736 Msa0281190:intron 45.0%
CTAGGAATTTGGATGCCAAG+AGG - chr2_3:16435847-16435866 Msa0281190:intron 45.0%
! TGTGGAGTTTTCGATGGACA+TGG - chr2_3:16435881-16435900 Msa0281190:intron 45.0%
! TTTTCGATGGACATGGACCT+TGG - chr2_3:16435888-16435907 Msa0281190:intron 45.0%
TTTCGATGGACATGGACCTT+GGG - chr2_3:16435889-16435908 Msa0281190:intron 45.0%
GACTTTCGCTGCAATTGATC+AGG - chr2_3:16436069-16436088 Msa0281190:CDS 45.0%
! CAGGATCTAAAGCAGCATAC+TGG - chr2_3:16436088-16436107 Msa0281190:CDS 45.0%
CACACGTCCTACAAAGGATA+AGG + chr2_3:16436268-16436287 None:intergenic 45.0%
CTTGAGTGTAGCGAGTAGAA+CGG - chr2_3:16436415-16436434 Msa0281190:CDS 45.0%
CAACAGTAACAGCAACAACC+AGG + chr2_3:16436738-16436757 None:intergenic 45.0%
GATCCAGACAAAAGTGAGTG+TGG - chr2_3:16437265-16437284 Msa0281190:intron 45.0%
!! ACACCACACTCACTTTTGTC+TGG + chr2_3:16437271-16437290 None:intergenic 45.0%
AGATGAAGCAGAGCGCATAA+TGG - chr2_3:16437329-16437348 Msa0281190:CDS 45.0%
ATGCCAAATGGTAAGAGTCC+AGG - chr2_3:16437408-16437427 Msa0281190:CDS 45.0%
AGTCCTGGACTCTTACCATT+TGG + chr2_3:16437414-16437433 None:intergenic 45.0%
GCTCTTGATATTGCTAGTCC+TGG + chr2_3:16437429-16437448 None:intergenic 45.0%
GCCAATGTGACCTACACATA+TGG - chr2_3:16437955-16437974 Msa0281190:intron 45.0%
TCGGAATTCAAACCCTGTTG+AGG + chr2_3:16438042-16438061 None:intergenic 45.0%
TTGAGGGACATGTTGTGAAG+GGG + chr2_3:16438440-16438459 None:intergenic 45.0%
GTTTGAGGGACATGTTGTGA+AGG + chr2_3:16438442-16438461 None:intergenic 45.0%
TTGCCTCTCGGATTCGGAAA+GGG + chr2_3:16435544-16435563 None:intergenic 50.0%
TTTGCCTCTCGGATTCGGAA+AGG + chr2_3:16435545-16435564 None:intergenic 50.0%
GGATGTTTGCCTCTCGGATT+CGG + chr2_3:16435550-16435569 None:intergenic 50.0%
AAAGCGGGATGTTTGCCTCT+CGG + chr2_3:16435556-16435575 None:intergenic 50.0%
TGCGGTGATCAAAGCCGAAA+GGG + chr2_3:16435641-16435660 None:intergenic 50.0%
TTGCGGTGATCAAAGCCGAA+AGG + chr2_3:16435642-16435661 None:intergenic 50.0%
TTCGATGGACATGGACCTTG+GGG - chr2_3:16435890-16435909 Msa0281190:intron 50.0%
GTTGTGCACACGTCCTACAA+AGG + chr2_3:16436274-16436293 None:intergenic 50.0%
TATGAGGGTAAGGGTTGCGA+AGG - chr2_3:16436511-16436530 Msa0281190:intron 50.0%
ACAGCAACAACCAGGCCTTA+AGG + chr2_3:16436730-16436749 None:intergenic 50.0%
! CAGTGTGCCATTCTCTGAAG+TGG + chr2_3:16436993-16437012 None:intergenic 50.0%
TGAGGGACATGTTGTGAAGG+GGG + chr2_3:16438439-16438458 None:intergenic 50.0%
!! ATAGGTCAGTGATAGCGGGC+AGG + chr2_3:16436472-16436491 None:intergenic 55.0%
GAGCCCTTTCCGAATCCGAG+AGG - chr2_3:16435538-16435557 Msa0281190:intron 60.0%
Chromosome Type Strat End Strand Name
chr2_3 gene 16434984 16438480 16434984 ID=Msa0281190;Name=Msa0281190
chr2_3 mRNA 16434984 16438480 16434984 ID=Msa0281190-mRNA-1;Parent=Msa0281190;Name=Msa0281190-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0|0|0|1|1|1|5|0|369
chr2_3 exon 16438235 16438480 16438235 ID=Msa0281190-mRNA-1:exon:6782;Parent=Msa0281190-mRNA-1
chr2_3 exon 16437305 16437613 16437305 ID=Msa0281190-mRNA-1:exon:6781;Parent=Msa0281190-mRNA-1
chr2_3 exon 16436409 16436526 16436409 ID=Msa0281190-mRNA-1:exon:6780;Parent=Msa0281190-mRNA-1
chr2_3 exon 16435910 16436133 16435910 ID=Msa0281190-mRNA-1:exon:6779;Parent=Msa0281190-mRNA-1
chr2_3 exon 16434984 16435196 16434984 ID=Msa0281190-mRNA-1:exon:6778;Parent=Msa0281190-mRNA-1
chr2_3 CDS 16438235 16438480 16438235 ID=Msa0281190-mRNA-1:cds;Parent=Msa0281190-mRNA-1
chr2_3 CDS 16437305 16437613 16437305 ID=Msa0281190-mRNA-1:cds;Parent=Msa0281190-mRNA-1
chr2_3 CDS 16436409 16436526 16436409 ID=Msa0281190-mRNA-1:cds;Parent=Msa0281190-mRNA-1
chr2_3 CDS 16435910 16436133 16435910 ID=Msa0281190-mRNA-1:cds;Parent=Msa0281190-mRNA-1
chr2_3 CDS 16434984 16435196 16434984 ID=Msa0281190-mRNA-1:cds;Parent=Msa0281190-mRNA-1
Gene Sequence

>Msa0281190

ATGGTTTCTATTCCATCTCTTGTCAATTTTATTTCAAGAACTATGTCTTTGAATAAAGATAAGAGTTATGGAAAGGATGATGATGCAAGGAAAGTTGTGGAAGCAATGGCAAAGGAAGCAAGAAAGAATGAAATGTTGTTGAATTCATCTGGAATTGTAAAGTCCGACAAGTCCAATAATTTTTCCTGTGTGTTCACTAAAAAGGGTCAGAAAGGATTCAATCAGGATTGTCTAATTGTTTGGGAGGAATTTGGATGCCAAGAGGACATTATTTTGTGTGGAGTTTTCGATGGACATGGACCTTGGGGACATTTTGTATCGAAAAGGGTCCGAAAAATGCTGCCAACTTTTTTGCTTTGCAATTGGCAAGAAAATCTGGCTGAAACACCACTTGACCTGAGTTTTAAGATGGAAACAGACATGAATCTCCATATATATGATATATGGAAGCAGTCCTACATAAAGACTTTCGCTGCAATTGATCAGGATCTAAAGCAGCATACTGGAATTGATTCCTTTCAAAGTGGAACTACAGCTTTGACAGTTATCAAACAGGGTGAATATCTCATAATAGCAAATGTTGGTGATTCTAGAGCTGTCTTAGCAACCACTTCAGAGAATGGCACACTGACTCCTATTCAACTTACCACTGACTTGAAGCCTAATTTACCAAATGAAGCAGAGCGCATAATGGAATCAAACGGGAGAGTATTTTGTATGGAAGATGAACCAGGAGTATATAGGGTTTGGATGCCAAATGGTAAGAGTCCAGGACTAGCAATATCAAGAGCATTTGGTGATTATTGTGTAAAAGACTTTGGACTAATCTCAGTACCAGATGTGACACAAAGAAAACTCACTACTATGGATCAATTTGTCATCTTAGCAACTGATGGGGTATGGGATGTTATATCCAACCAAGCAGCTATGAAAATTGTTGCTTCAACACTAAATAGAGAAAAAGCAGCTGATAGGCTAGTAAAATGTGCCACACATGAATGGAAACTTAAGAGAAAAGGCATTGCAATTGATGATATATCAGCTATTTGTCTCTTCTTTCACTCTCCCCCTTCACAACATGTCCCTCAAACCACAAAAGTTGTTGAATAA

Protein sequence

>Msa0281190

MVSIPSLVNFISRTMSLNKDKSYGKDDDARKVVEAMAKEARKNEMLLNSSGIVKSDKSNNFSCVFTKKGQKGFNQDCLIVWEEFGCQEDIILCGVFDGHGPWGHFVSKRVRKMLPTFLLCNWQENLAETPLDLSFKMETDMNLHIYDIWKQSYIKTFAAIDQDLKQHTGIDSFQSGTTALTVIKQGEYLIIANVGDSRAVLATTSENGTLTPIQLTTDLKPNLPNEAERIMESNGRVFCMEDEPGVYRVWMPNGKSPGLAISRAFGDYCVKDFGLISVPDVTQRKLTTMDQFVILATDGVWDVISNQAAMKIVASTLNREKAADRLVKCATHEWKLKRKGIAIDDISAICLFFHSPPSQHVPQTTKVVE*