AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1164450

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1164450 MtrunA17_Chr7g0262231 94.209 449 26 0 1 449 1 449 0.0 880
Msa1164450 MtrunA17_Chr7g0262231 26.538 260 153 6 160 414 881 1107 6.04e-19 90.9
Msa1164450 MtrunA17_Chr7g0261981 93.987 449 27 0 1 449 1 449 0.0 877
Msa1164450 MtrunA17_Chr7g0261981 25.979 281 168 7 160 433 859 1106 6.71e-19 90.5
Msa1164450 MtrunA17_Chr7g0261951 93.987 449 27 0 1 449 1 449 0.0 872
Msa1164450 MtrunA17_Chr7g0261951 26.335 281 167 7 160 433 877 1124 2.04e-18 89.0
Msa1164450 MtrunA17_Chr7g0261971 93.541 449 25 1 1 449 1 445 0.0 863
Msa1164450 MtrunA17_Chr7g0262241 93.318 449 30 0 1 449 1 449 0.0 850
Msa1164450 MtrunA17_Chr7g0262241 27.526 287 167 8 160 438 878 1131 8.29e-21 96.7
Msa1164450 MtrunA17_Chr7g0262221 88.419 449 34 1 1 449 2 432 0.0 816
Msa1164450 MtrunA17_Chr7g0262221 26.481 287 170 8 160 438 852 1105 2.16e-18 89.0
Msa1164450 MtrunA17_Chr3g0138261 72.185 453 120 3 1 448 1 452 0.0 684
Msa1164450 MtrunA17_Chr3g0138261 25.914 301 183 7 159 452 867 1134 1.32e-20 95.9
Msa1164450 MtrunA17_Chr2g0332221 70.946 444 128 1 6 449 12 454 0.0 681
Msa1164450 MtrunA17_Chr2g0332221 26.712 292 168 7 156 437 849 1104 1.47e-20 95.9
Msa1164450 MtrunA17_Chr2g0332211 70.721 444 129 1 6 449 93 535 0.0 676
Msa1164450 MtrunA17_Chr2g0332211 26.667 285 169 7 160 437 937 1188 6.12e-20 94.0
Msa1164450 MtrunA17_Chr2g0332241 70.495 444 130 1 6 449 12 454 0.0 676
Msa1164450 MtrunA17_Chr2g0332241 26.736 288 165 7 160 437 854 1105 7.92e-20 93.6
Msa1164450 MtrunA17_Chr4g0004021 71.175 451 127 2 2 449 8 458 0.0 675
Msa1164450 MtrunA17_Chr4g0004021 27.046 281 165 7 160 433 861 1108 2.99e-19 91.7
Msa1164450 MtrunA17_Chr4g0003981 71.973 446 122 2 6 449 16 460 0.0 672
Msa1164450 MtrunA17_Chr4g0003981 26.923 260 152 6 160 414 864 1090 3.19e-19 91.7
Msa1164450 MtrunA17_Chr4g0003971 72.222 450 122 2 1 449 1 448 0.0 666
Msa1164450 MtrunA17_Chr4g0003971 28.114 281 162 7 160 433 823 1070 2.89e-20 94.7
Msa1164450 MtrunA17_Chr7g0262261 75.359 418 101 1 32 449 5 420 0.0 665
Msa1164450 MtrunA17_Chr7g0262261 59.140 93 36 1 19 109 1421 1513 8.27e-26 112
Msa1164450 MtrunA17_Chr7g0262251 71.171 444 106 3 8 449 21 444 0.0 648
Msa1164450 MtrunA17_Chr7g0262251 28.826 281 160 7 160 433 825 1072 1.42e-21 99.0
Msa1164450 MtrunA17_Chr1g0148841 69.388 441 133 2 8 448 14 452 0.0 629
Msa1164450 MtrunA17_Chr1g0148841 27.046 281 165 9 160 433 875 1122 8.66e-19 90.1
Msa1164450 MtrunA17_Chr1g0171351 64.665 433 144 2 25 448 30 462 0.0 581
Msa1164450 MtrunA17_Chr1g0171351 27.143 280 166 6 140 414 872 1118 2.90e-22 101
Msa1164450 MtrunA17_Chr1g0148811 65.668 434 147 2 15 448 9 440 0.0 577
Msa1164450 MtrunA17_Chr1g0148811 26.978 278 159 6 160 436 852 1086 2.65e-17 85.5
Msa1164450 MtrunA17_Chr7g0265981 59.499 479 181 6 6 476 24 497 0.0 576
Msa1164450 MtrunA17_Chr7g0265981 27.241 290 171 7 157 439 878 1134 3.00e-22 100
Msa1164450 MtrunA17_Chr7g0265971 59.205 478 183 6 6 476 19 491 0.0 575
Msa1164450 MtrunA17_Chr7g0265971 26.645 304 169 8 157 439 870 1140 8.23e-18 87.0
Msa1164450 MtrunA17_Chr1g0198291 65.083 421 143 1 32 448 55 475 0.0 570
Msa1164450 MtrunA17_Chr8g0340651 60.373 429 160 1 31 449 37 465 0.0 563
Msa1164450 MtrunA17_Chr8g0340651 27.817 284 163 8 159 434 902 1151 4.44e-21 97.4
Msa1164450 MtrunA17_Chr2g0331081 56.276 478 184 3 31 497 37 500 0.0 558
Msa1164450 MtrunA17_Chr2g0331081 27.682 289 169 8 158 439 887 1142 2.58e-22 101
Msa1164450 MtrunA17_Chr7g0265961 60.175 457 171 4 4 449 13 469 0.0 554
Msa1164450 MtrunA17_Chr4g0062871 56.979 437 187 1 14 449 1 437 4.14e-171 519
Msa1164450 MtrunA17_Chr4g0062871 27.402 281 164 8 160 433 842 1089 1.71e-18 89.4
Msa1164450 MtrunA17_Chr0c20g0493841 56.193 436 178 3 25 448 20 454 3.14e-166 506
Msa1164450 MtrunA17_Chr0c20g0493841 27.852 298 170 10 154 439 845 1109 2.69e-19 91.7
Msa1164450 MtrunA17_Chr7g0266001 66.377 345 116 0 105 449 6 350 2.26e-164 481
Msa1164450 MtrunA17_Chr4g0069211 50.749 467 198 8 25 474 20 471 1.82e-153 464
Msa1164450 MtrunA17_Chr3g0104621 59.767 343 137 1 107 449 1 342 3.13e-132 415
Msa1164450 MtrunA17_Chr3g0104621 27.027 296 170 7 157 439 759 1021 4.05e-21 97.4
Msa1164450 MtrunA17_Chr5g0429871 59.036 249 101 1 201 448 17 265 3.98e-97 318
Msa1164450 MtrunA17_Chr5g0429871 26.829 287 170 7 160 439 665 918 6.44e-19 90.5
Msa1164450 MtrunA17_Chr7g0262331 63.636 209 70 4 30 234 2 208 1.99e-86 264
Msa1164450 MtrunA17_Chr7g0262321 62.766 188 52 1 261 448 2 171 8.75e-71 244
Msa1164450 MtrunA17_Chr4g0039261 36.131 274 138 7 162 433 51 289 4.48e-42 159
Msa1164450 MtrunA17_Chr5g0429861 40.175 229 119 5 2 217 5 228 7.51e-42 150
Msa1164450 MtrunA17_Chr6g0477811 35.842 279 142 7 161 437 65 308 5.68e-41 156
Msa1164450 MtrunA17_Chr5g0408061 34.228 298 151 9 161 449 64 325 8.15e-41 155
Msa1164450 MtrunA17_Chr1g0208391 34.296 277 137 8 162 431 93 331 3.40e-38 148
Msa1164450 MtrunA17_Chr2g0318061 34.182 275 140 8 162 433 31 267 1.28e-37 142
Msa1164450 MtrunA17_Chr1g0198931 36.913 298 137 13 162 447 107 365 3.72e-37 145
Msa1164450 MtrunA17_Chr4g0050291 33.684 285 145 9 161 439 49 295 1.96e-36 142
Msa1164450 MtrunA17_Chr4g0039251 34.173 278 138 9 162 433 93 331 2.05e-36 143
Msa1164450 MtrunA17_Chr8g0359931 33.333 273 145 7 162 433 66 302 9.37e-36 140
Msa1164450 MtrunA17_Chr4g0050261 31.561 301 162 9 161 454 72 335 3.03e-34 137
Msa1164450 MtrunA17_Chr4g0050251 32.624 282 152 8 161 439 72 318 3.28e-34 136
Msa1164450 MtrunA17_Chr1g0176441 30.864 324 171 11 120 433 128 408 1.97e-33 134
Msa1164450 MtrunA17_Chr1g0200651 32.847 274 146 9 162 433 90 327 5.01e-33 133
Msa1164450 MtrunA17_Chr1g0176451 31.387 274 153 6 161 433 22 261 2.38e-32 130
Msa1164450 MtrunA17_Chr1g0199471 32.258 279 151 8 156 431 511 754 1.18e-31 129
Msa1164450 MtrunA17_Chr7g0267971 30.657 274 154 7 161 433 159 397 3.39e-31 127
Msa1164450 MtrunA17_Chr3g0102731 30.576 278 154 8 158 433 94 334 5.07e-31 126
Msa1164450 MtrunA17_Chr1g0180971 33.333 282 148 9 153 431 406 650 5.75e-31 127
Msa1164450 MtrunA17_Chr5g0446901 30.662 287 160 8 151 433 98 349 2.44e-30 124
Msa1164450 MtrunA17_Chr7g0264441 34.130 293 152 11 143 431 261 516 2.86e-30 125
Msa1164450 MtrunA17_Chr4g0050221 31.343 268 147 6 162 426 31 264 1.26e-29 122
Msa1164450 MtrunA17_Chr4g0026731 31.250 256 138 8 190 442 7 227 3.92e-28 118
Msa1164450 MtrunA17_Chr4g0028621 34.043 282 146 9 153 431 500 744 1.04e-27 117
Msa1164450 MtrunA17_Chr4g0039231 33.333 213 107 5 223 433 19 198 2.05e-27 116
Msa1164450 MtrunA17_Chr2g0327241 27.562 283 169 5 156 437 120 367 6.25e-26 111
Msa1164450 MtrunA17_Chr7g0263351 30.337 267 151 6 162 427 127 359 1.74e-25 110
Msa1164450 MtrunA17_Chr1g0213091 30.909 275 151 7 162 431 122 362 2.13e-25 110
Msa1164450 MtrunA17_Chr2g0316301 29.618 314 177 7 162 468 73 349 5.96e-25 108
Msa1164450 MtrunA17_Chr3g0130331 27.206 272 161 5 161 430 57 293 2.47e-23 103
Msa1164450 MtrunA17_Chr8g0384391 26.592 267 160 3 161 427 55 285 3.23e-23 103
Msa1164450 MtrunA17_Chr5g0411621 26.408 284 175 5 157 440 46 295 5.99e-23 102
Msa1164450 MtrunA17_Chr4g0065231 27.402 281 166 6 155 431 67 313 1.47e-22 101
Msa1164450 MtrunA17_Chr1g0202431 27.797 295 163 8 141 431 31 279 4.61e-22 99.8
Msa1164450 MtrunA17_Chr4g0050201 30.000 230 122 8 201 426 1 195 4.18e-21 96.7
Msa1164450 MtrunA17_Chr8g0393191 26.978 278 166 5 162 437 69 311 1.14e-20 95.9
Msa1164450 MtrunA17_Chr7g0266011 44.037 109 53 3 12 112 26 134 1.55e-20 87.8
Msa1164450 MtrunA17_Chr7g0265991 25.249 301 174 7 157 439 54 321 2.09e-20 94.7
Msa1164450 MtrunA17_Chr3g0093331 25.912 274 155 5 159 431 10 236 7.70e-18 83.6
Msa1164450 MtrunA17_Chr8g0390451 49.231 65 33 0 236 300 22 86 4.65e-16 73.6
Msa1164450 MtrunA17_Chr8g0390471 34.091 88 57 1 162 249 5 91 4.39e-11 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1164450 AT1G15520.1 68.707 441 136 1 11 449 16 456 0.0 661
Msa1164450 AT1G15520.1 27.170 265 155 6 155 414 845 1076 9.29e-19 90.5
Msa1164450 AT1G15520.2 68.707 441 136 1 11 449 16 456 0.0 660
Msa1164450 AT1G15520.2 27.170 265 155 6 155 414 845 1076 7.16e-19 90.9
Msa1164450 AT2G36380.1 62.181 431 159 2 22 448 44 474 0.0 569
Msa1164450 AT1G66950.1 61.298 447 166 3 9 448 30 476 0.0 569
Msa1164450 AT1G66950.1 26.437 261 154 6 159 414 877 1104 1.83e-20 95.9
Msa1164450 AT1G15210.1 58.963 463 176 3 1 449 9 471 0.0 557
Msa1164450 AT1G15210.1 28.322 286 165 7 156 434 861 1113 8.25e-23 103
Msa1164450 AT1G59870.1 56.962 474 182 3 32 497 48 507 0.0 554
Msa1164450 AT1G59870.1 28.622 283 162 7 159 434 891 1140 7.13e-23 103
Msa1164450 AT3G16340.1 62.028 424 158 1 25 448 28 448 0.0 546
Msa1164450 AT3G16340.1 29.310 290 165 9 157 439 836 1092 9.47e-24 106
Msa1164450 AT3G30842.1 61.005 418 159 2 36 449 31 448 2.19e-176 533
Msa1164450 AT3G30842.1 28.030 264 152 6 156 414 842 1072 1.26e-20 96.3
Msa1164450 AT3G16340.2 61.085 424 157 2 25 448 28 443 7.94e-176 531
Msa1164450 AT3G16340.2 29.310 290 165 9 157 439 831 1087 8.88e-24 106
Msa1164450 AT2G26910.1 55.835 437 192 1 14 449 1 437 7.55e-165 503
Msa1164450 AT2G37280.2 55.582 421 179 4 31 445 19 437 9.34e-160 488
Msa1164450 AT2G37280.2 28.521 284 163 7 157 433 835 1085 2.89e-21 98.2
Msa1164450 AT2G37280.1 55.582 421 179 4 31 445 19 437 3.85e-159 488
Msa1164450 AT2G37280.1 28.521 284 163 7 157 433 835 1085 3.36e-21 98.2
Msa1164450 AT3G53480.1 55.012 429 180 4 29 448 51 475 9.75e-157 482
Msa1164450 AT3G53480.1 28.137 263 151 6 157 414 872 1101 7.71e-22 100
Msa1164450 AT2G29940.1 53.425 438 191 4 25 449 26 463 4.51e-155 477
Msa1164450 AT2G29940.1 27.124 306 183 7 159 457 850 1122 5.09e-22 100
Msa1164450 AT4G15230.2 54.739 422 181 5 32 448 26 442 8.25e-154 472
Msa1164450 AT4G15230.2 29.043 303 174 9 161 456 826 1094 5.10e-22 100
Msa1164450 AT2G37280.3 52.444 450 177 6 31 445 19 466 1.57e-153 474
Msa1164450 AT2G37280.3 28.521 284 163 7 157 433 864 1114 4.11e-21 97.8
Msa1164450 AT4G15230.3 54.739 422 181 5 32 448 26 442 2.84e-153 472
Msa1164450 AT4G15230.3 29.043 303 174 9 161 456 826 1094 5.94e-22 100
Msa1164450 AT4G15230.1 54.739 422 181 5 32 448 26 442 2.84e-153 472
Msa1164450 AT4G15230.1 29.043 303 174 9 161 456 826 1094 5.94e-22 100
Msa1164450 AT4G15233.2 54.460 426 183 3 29 448 21 441 6.14e-153 471
Msa1164450 AT4G15233.2 29.771 262 146 7 158 414 815 1043 6.27e-21 97.4
Msa1164450 AT4G15233.1 54.460 426 183 3 29 448 21 441 7.65e-153 471
Msa1164450 AT4G15233.1 29.771 262 146 7 158 414 815 1043 6.93e-21 97.1
Msa1164450 AT4G15215.11 54.762 420 182 4 32 448 25 439 3.00e-152 469
Msa1164450 AT4G15215.11 30.116 259 143 7 161 414 823 1048 1.11e-20 96.7
Msa1164450 AT4G15215.9 54.762 420 182 4 32 448 22 436 3.86e-152 469
Msa1164450 AT4G15215.9 30.116 259 143 7 161 414 820 1045 1.15e-20 96.7
Msa1164450 AT4G15215.4 54.762 420 182 4 32 448 22 436 3.86e-152 469
Msa1164450 AT4G15215.4 30.116 259 143 7 161 414 820 1045 1.15e-20 96.7
Msa1164450 AT4G15215.5 54.762 420 182 4 32 448 22 436 3.86e-152 469
Msa1164450 AT4G15215.5 30.116 259 143 7 161 414 820 1045 1.15e-20 96.7
Msa1164450 AT4G15215.3 54.762 420 182 4 32 448 22 436 3.86e-152 469
Msa1164450 AT4G15215.3 30.116 259 143 7 161 414 820 1045 1.15e-20 96.7
Msa1164450 AT4G15215.2 54.762 420 182 4 32 448 22 436 3.86e-152 469
Msa1164450 AT4G15215.2 30.116 259 143 7 161 414 820 1045 1.15e-20 96.7
Msa1164450 AT4G15236.1 53.409 440 192 6 17 448 5 439 1.75e-149 462
Msa1164450 AT4G15236.1 30.534 262 144 7 158 414 813 1041 4.02e-23 103
Msa1164450 AT4G15233.3 57.292 384 158 2 66 448 1 379 5.78e-146 451
Msa1164450 AT4G15233.3 29.771 262 146 7 158 414 753 981 8.44e-21 97.1
Msa1164450 AT4G15233.6 57.292 384 158 2 66 448 1 379 5.78e-146 451
Msa1164450 AT4G15233.6 29.771 262 146 7 158 414 753 981 8.44e-21 97.1
Msa1164450 AT4G15215.1 53.571 420 180 5 32 448 25 432 3.91e-145 450
Msa1164450 AT4G15215.1 30.116 259 143 7 161 414 816 1041 1.09e-20 96.7
Msa1164450 AT4G15215.8 53.571 420 180 5 32 448 22 429 4.53e-145 450
Msa1164450 AT4G15215.8 30.116 259 143 7 161 414 813 1038 1.19e-20 96.7
Msa1164450 AT4G15215.10 53.571 420 180 5 32 448 22 429 4.53e-145 450
Msa1164450 AT4G15215.10 30.116 259 143 7 161 414 813 1038 1.19e-20 96.7
Msa1164450 AT4G15215.6 53.571 420 180 5 32 448 22 429 4.53e-145 450
Msa1164450 AT4G15215.6 30.116 259 143 7 161 414 813 1038 1.19e-20 96.7
Msa1164450 AT4G15215.7 53.571 420 180 5 32 448 22 429 4.53e-145 450
Msa1164450 AT4G15215.7 30.116 259 143 7 161 414 813 1038 1.19e-20 96.7
Msa1164450 AT4G15233.8 52.582 426 182 5 29 448 21 432 8.07e-143 444
Msa1164450 AT4G15233.8 29.771 262 146 7 158 414 806 1034 5.63e-21 97.4
Msa1164450 AT4G15233.7 52.113 426 175 4 29 448 21 423 3.20e-141 439
Msa1164450 AT4G15233.7 29.771 262 146 7 158 414 797 1025 6.09e-21 97.4
Msa1164450 AT4G15230.4 56.948 367 152 3 83 448 2 363 1.63e-140 437
Msa1164450 AT4G15230.4 29.043 303 174 9 161 456 747 1015 8.24e-22 100
Msa1164450 AT4G15233.5 54.688 384 150 3 66 448 1 361 8.51e-135 420
Msa1164450 AT4G15233.5 29.600 250 138 7 170 414 684 900 1.97e-18 89.4
Msa1164450 AT4G15233.4 54.688 384 150 3 66 448 1 361 8.51e-135 420
Msa1164450 AT4G15233.4 29.600 250 138 7 170 414 684 900 1.97e-18 89.4
Msa1164450 AT2G37280.4 62.637 273 102 0 173 445 7 279 3.43e-119 379
Msa1164450 AT2G37280.4 28.521 284 163 7 157 433 677 927 6.17e-21 97.4
Msa1164450 AT3G25620.1 37.676 284 135 11 162 440 99 345 5.81e-43 159
Msa1164450 AT3G25620.2 38.112 286 131 12 162 440 99 345 6.39e-42 159
Msa1164450 AT2G01320.7 35.689 283 145 7 155 434 83 331 1.14e-40 153
Msa1164450 AT2G01320.6 35.689 283 145 7 155 434 83 331 1.14e-40 153
Msa1164450 AT1G17840.1 36.918 279 139 8 161 437 68 311 1.79e-40 155
Msa1164450 AT2G01320.1 35.689 283 145 7 155 434 83 331 5.16e-40 154
Msa1164450 AT2G01320.4 35.689 283 145 7 155 434 83 331 5.16e-40 154
Msa1164450 AT2G01320.3 35.689 283 145 7 155 434 83 331 5.25e-40 154
Msa1164450 AT2G01320.8 33.550 307 162 8 155 458 83 350 5.31e-40 153
Msa1164450 AT2G01320.5 33.550 307 162 8 155 458 83 350 5.31e-40 153
Msa1164450 AT2G01320.2 35.689 283 145 7 155 434 83 331 5.53e-40 154
Msa1164450 AT1G31770.1 35.401 274 140 7 161 433 80 317 4.86e-39 150
Msa1164450 AT1G51500.1 33.333 282 148 7 154 433 40 283 2.87e-37 145
Msa1164450 AT4G27420.1 33.922 283 146 10 156 433 60 306 6.96e-36 141
Msa1164450 AT3G21090.1 32.862 283 147 10 154 433 41 283 1.61e-35 140
Msa1164450 AT1G51460.1 36.577 298 150 9 162 457 30 290 3.99e-35 139
Msa1164450 AT1G71960.1 33.942 274 146 9 161 433 82 321 1.70e-34 137
Msa1164450 AT3G13220.1 31.449 283 143 9 141 414 83 323 2.90e-31 128
Msa1164450 AT5G06530.3 32.234 273 149 8 162 433 179 416 8.98e-31 126
Msa1164450 AT5G06530.2 32.234 273 149 8 162 433 179 416 1.10e-30 126
Msa1164450 AT5G06530.1 32.234 273 149 8 162 433 179 416 1.10e-30 126
Msa1164450 AT2G37010.2 32.714 269 143 8 156 421 494 727 5.09e-30 125
Msa1164450 AT2G37010.1 32.714 269 143 8 156 421 494 727 5.09e-30 125
Msa1164450 AT1G53390.1 31.502 273 149 8 162 431 523 760 1.22e-29 124
Msa1164450 AT5G06530.4 32.031 256 138 8 179 433 1 221 1.13e-27 116
Msa1164450 AT2G28070.2 28.622 283 166 5 156 437 127 374 1.38e-27 117
Msa1164450 AT2G28070.1 28.622 283 166 5 156 437 127 374 1.38e-27 117
Msa1164450 AT2G37360.1 30.337 267 151 5 162 427 133 365 1.31e-26 114
Msa1164450 AT3G53510.1 31.086 267 149 5 162 427 126 358 3.59e-26 113
Msa1164450 AT5G60740.1 32.979 282 149 9 153 431 508 752 4.46e-26 113
Msa1164450 AT3G55090.1 29.000 300 173 8 134 427 74 339 1.23e-25 111
Msa1164450 AT2G13610.1 26.990 289 174 5 161 448 61 313 2.40e-25 110
Msa1164450 AT3G55110.1 29.677 310 174 10 129 431 56 328 3.42e-25 110
Msa1164450 AT1G53270.1 28.940 349 199 8 112 460 15 314 6.92e-25 108
Msa1164450 AT2G39350.1 29.221 308 171 9 155 449 102 375 6.99e-25 108
Msa1164450 AT3G55100.1 30.000 280 157 8 161 438 50 292 1.68e-24 107
Msa1164450 AT3G55100.2 30.000 280 157 8 161 438 50 292 1.68e-24 107
Msa1164450 AT3G55130.1 30.483 269 151 7 161 427 98 332 2.47e-24 107
Msa1164450 AT5G19410.2 26.882 279 168 6 158 432 71 317 4.39e-20 94.0
Msa1164450 AT5G19410.1 26.882 279 168 6 158 432 62 308 4.56e-20 94.0
Msa1164450 AT4G25750.1 26.786 280 165 5 152 431 20 259 3.10e-19 91.3
Msa1164450 AT5G13580.1 29.104 268 155 5 161 427 107 340 6.19e-19 90.5
Msa1164450 AT5G52860.1 24.126 286 174 5 148 431 28 272 9.23e-17 83.6

Find 99 sgRNAs with CRISPR-Local

Find 202 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAAATAGATTGTAAGTTTC+TGG 0.141371 7_4:-56127078 None:intergenic
TTCTAGCTAACCTTCAATTT+TGG 0.143177 7_4:-56125667 None:intergenic
TCTGCCACTCCTTTCCTATT+TGG 0.169484 7_4:-56127192 None:intergenic
ATGATGAAGAAGCTCTTAAA+TGG 0.231811 7_4:+56124862 Msa1164450:CDS
TAAAAGACCAAGAGCAATAC+TGG 0.257781 7_4:+56127322 Msa1164450:CDS
GGATTGGTAGTTCATCAATT+TGG 0.264276 7_4:+56124790 Msa1164450:CDS
CCACATAAGCAGCAGTTCTT+TGG 0.277597 7_4:-56125866 None:intergenic
GAGCTTCTTCATCATCTTCT+TGG 0.281650 7_4:-56124854 None:intergenic
GCCTACCTTCACTAATTTCA+TGG 0.283156 7_4:+56125271 Msa1164450:CDS
TGGAGGGTGGAGGTAGTTTC+AGG 0.285263 7_4:+56124769 Msa1164450:CDS
CACATAAGCAGCAGTTCTTT+GGG 0.291294 7_4:-56125865 None:intergenic
GAGCTTCTGCTTCGATATTC+AGG 0.298469 7_4:-56125229 None:intergenic
CCACTGACGTGTACTTTATA+TGG 0.321607 7_4:-56127914 None:intergenic
ACCAACTAAAGCTTTATTCA+TGG 0.345531 7_4:+56126942 Msa1164450:CDS
GTGGAATATTAAAGCCTTCC+AGG 0.352817 7_4:+56125483 Msa1164450:CDS
AACCACACTCCTGTTGGCTT+TGG 0.354490 7_4:+56125630 Msa1164450:CDS
GTAGATGAAGAGAGTTCAAT+AGG 0.382888 7_4:-56125418 None:intergenic
AAAGTTTCTGCTCAAACTTA+AGG 0.388000 7_4:+56125043 Msa1164450:CDS
TCTGGTAGGGTGACTTATAA+TGG 0.398130 7_4:+56125819 Msa1164450:CDS
CAAGGAGTTGGACCTCGTTA+TGG 0.401958 7_4:+56125954 Msa1164450:CDS
GGATGAAATATCTACGGGTT+TGG 0.404551 7_4:+56126963 Msa1164450:CDS
TCGAATCGAACTTCTATTGT+AGG 0.406120 7_4:-56125203 None:intergenic
CCAAAGAACTGCTGCTTATG+TGG 0.417441 7_4:+56125866 Msa1164450:CDS
TGTGTTCCCAGTATTGCTCT+TGG 0.418265 7_4:-56127329 None:intergenic
GGTTTGCTCACTTCACTTCA+AGG 0.418409 7_4:+56124927 Msa1164450:CDS
TCCATGAATAAAGCTTTAGT+TGG 0.423072 7_4:-56126943 None:intergenic
GTTGACTGTTAGAGAAACTT+TGG 0.432255 7_4:+56125914 Msa1164450:CDS
GTCGATTCAGATCGTGCCTT+GGG 0.440645 7_4:+56128092 Msa1164450:CDS
CTTCTTCATCATCTTCTTGG+TGG 0.449088 7_4:-56124851 None:intergenic
AATATTCTCAAGGATGTTAG+TGG 0.453666 7_4:+56125464 Msa1164450:CDS
ACACTCCTGTTGGCTTTGGC+CGG 0.463489 7_4:+56125634 Msa1164450:CDS
ATTCATGGATGAAATATCTA+CGG 0.465538 7_4:+56126957 Msa1164450:CDS
GATGAAGGAGCAGAAGTAGC+TGG 0.478497 7_4:+56127890 Msa1164450:CDS
CGAGTTATTATACGTCATGA+TGG 0.480489 7_4:+56127862 Msa1164450:CDS
CAAAAGAAACGCCTTACAAC+AGG 0.480553 7_4:+56126822 Msa1164450:CDS
CATAACGAGGTCCAACTCCT+TGG 0.489265 7_4:-56125953 None:intergenic
TCCTTGGACCCTTGCTGAGA+AGG 0.493320 7_4:-56125937 None:intergenic
AAGTTTCTGGCGGCGGCTGA+AGG 0.494464 7_4:-56127065 None:intergenic
CACTATATACCAAGGTCCTC+GGG 0.497479 7_4:+56127128 Msa1164450:CDS
TCAGCAAGGGTCCAAGGAGT+TGG 0.502813 7_4:+56125942 Msa1164450:CDS
TTCATGTACACATCAAGATC+TGG 0.503365 7_4:-56126472 None:intergenic
TTCCTCAAACGTTCAAAAGT+AGG 0.504895 7_4:-56124903 None:intergenic
TGATAACAGATTATGTCCTA+AGG 0.509802 7_4:+56126634 Msa1164450:CDS
TTCATGGATGAAATATCTAC+GGG 0.510607 7_4:+56126958 Msa1164450:CDS
AAAACTTGATCCAAAATTGA+AGG 0.512290 7_4:+56125657 Msa1164450:CDS
TGATGAAGAAGCTCTTAAAT+GGG 0.512782 7_4:+56124863 Msa1164450:CDS
CCGCGGTTCCTTTGAGAATG+TGG 0.513311 7_4:-56127032 None:intergenic
AATGTAGGGGAGATGTTGGT+TGG 0.515674 7_4:+56126919 Msa1164450:intron
GTTTGCTCACTTCACTTCAA+GGG 0.516738 7_4:+56124928 Msa1164450:CDS
GCCTTCTCAGCAAGGGTCCA+AGG 0.516744 7_4:+56125936 Msa1164450:CDS
GGTGGAGGTAGTTTCAGGAT+TGG 0.517606 7_4:+56124774 Msa1164450:CDS
GGTCGATTCAGATCGTGCCT+TGG 0.517859 7_4:+56128091 Msa1164450:CDS
GCAATGATAAGAGGTATCTC+TGG 0.518499 7_4:+56126795 Msa1164450:CDS
GAGATCGATATTGAGAAGCT+TGG 0.518932 7_4:+56124960 Msa1164450:CDS
TTGGTAGTTCATCAATTTGG+AGG 0.523769 7_4:+56124793 Msa1164450:CDS
CTTCTCAATATCGATCTCAA+TGG 0.527857 7_4:-56124955 None:intergenic
TATAAATGTAGGGGAGATGT+TGG 0.529082 7_4:+56126915 Msa1164450:intron
ACTTGTTAGACTTGCTGAAG+AGG 0.529899 7_4:+56125013 Msa1164450:CDS
AACTTTGGCCTTCTCAGCAA+GGG 0.549423 7_4:+56125929 Msa1164450:CDS
GTGGGAAATGCAATGATAAG+AGG 0.551778 7_4:+56126786 Msa1164450:CDS
TACACATCAAGATCTGGATC+AGG 0.554683 7_4:-56126466 None:intergenic
ACACTATATACCAAGGTCCT+CGG 0.555260 7_4:+56127127 Msa1164450:CDS
TTTAAATGTCCAAATAGGAA+AGG 0.558289 7_4:+56127183 Msa1164450:CDS
GCTCAAACTTAAGGATCGAA+TGG 0.559485 7_4:+56125052 Msa1164450:CDS
AACTTAAGGATCGAATGGAC+AGG 0.561378 7_4:+56125057 Msa1164450:CDS
AGATTGTAAGTTTCTGGCGG+CGG 0.564925 7_4:-56127072 None:intergenic
AAACTTTGGCCTTCTCAGCA+AGG 0.565835 7_4:+56125928 Msa1164450:CDS
GATCAAAATGATCTTCACAT+TGG 0.570352 7_4:+56125888 Msa1164450:CDS
GATAACAGATTATGTCCTAA+GGG 0.578159 7_4:+56126635 Msa1164450:CDS
GCACGTGTTCCCGAGGACCT+TGG 0.583551 7_4:-56127137 None:intergenic
ACAACATCTAAATATTCTCA+AGG 0.587622 7_4:+56125454 Msa1164450:CDS
TTTGCTCACTTCACTTCAAG+GGG 0.590533 7_4:+56124929 Msa1164450:CDS
ACATAAGCAGCAGTTCTTTG+GGG 0.594957 7_4:-56125864 None:intergenic
CAATATGTCCACATTCTCAA+AGG 0.595709 7_4:+56127024 Msa1164450:CDS
CCACAGGCTGTAGCAAATGA+AGG 0.597045 7_4:+56126597 Msa1164450:intron
TGTAGCAAATGAAGGCCAGA+AGG 0.601459 7_4:+56126605 Msa1164450:CDS
TTTCATGGTTAATATAGTAG+AGG 0.602626 7_4:+56125286 Msa1164450:CDS
ATATGTGCTGATACTGTTGT+GGG 0.603906 7_4:+56126768 Msa1164450:CDS
GTGGTGATGATGGAGGGTGG+AGG 0.607031 7_4:+56124759 None:intergenic
TATTGAATTCTAATGACCCA+AGG 0.610977 7_4:-56128108 None:intergenic
AATTCGTATTGATACCTGGA+AGG 0.611598 7_4:-56125497 None:intergenic
GATATGTGCTGATACTGTTG+TGG 0.614684 7_4:+56126767 Msa1164450:CDS
ATTAACCATGAAATTAGTGA+AGG 0.615008 7_4:-56125276 None:intergenic
ACCATGAAATTAGTGAAGGT+AGG 0.619076 7_4:-56125272 None:intergenic
CATAAGCAGCAGTTCTTTGG+GGG 0.621089 7_4:-56125863 None:intergenic
TCACTAGTGGTGATGATGGA+GGG 0.623995 7_4:+56124753 None:intergenic
GGCCAAAGCCAACAGGAGTG+TGG 0.627884 7_4:-56125632 None:intergenic
AAAAGACCAAGAGCAATACT+GGG 0.629897 7_4:+56127323 Msa1164450:CDS
AATTCAAGCACGTGTTCCCG+AGG 0.636376 7_4:-56127144 None:intergenic
ATGTCCAAATAGGAAAGGAG+TGG 0.643864 7_4:+56127188 Msa1164450:CDS
ATGATAAGAGGTATCTCTGG+CGG 0.659627 7_4:+56126798 Msa1164450:CDS
AATAGATTGTAAGTTTCTGG+CGG 0.663428 7_4:-56127075 None:intergenic
CTAGTGGTGATGATGGAGGG+TGG 0.670984 7_4:+56124756 None:intergenic
GATAGTCACACTATATACCA+AGG 0.678386 7_4:+56127120 Msa1164450:CDS
CCATATAAAGTACACGTCAG+TGG 0.680878 7_4:+56127914 Msa1164450:CDS
ATCGAAGCAGAAGCTCGTGT+AGG 0.699267 7_4:+56125236 Msa1164450:CDS
CCACATTCTCAAAGGAACCG+CGG 0.722372 7_4:+56127032 Msa1164450:CDS
TAGACAAACTAACCATAACG+AGG 0.752957 7_4:-56125966 None:intergenic
CTGAAGGAGTGAGATCACCG+CGG 0.821002 7_4:-56127049 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CTTTTACATTTTAATTTTAA+AGG + chr7_4:56125394-56125413 Msa1164450:intron 10.0%
!!! ACAAAGTTTTATTTATTTAT+TGG + chr7_4:56127264-56127283 Msa1164450:intron 10.0%
!!! TATATCTGAAATAAATAAAA+GGG - chr7_4:56127842-56127861 None:intergenic 10.0%
!!! ATATAAAAGTTTTTTCTACT+CGG + chr7_4:56126499-56126518 Msa1164450:intron 15.0%
!! ATAATATTACAATGTAGTTA+TGG - chr7_4:56126693-56126712 None:intergenic 15.0%
!! AATAATCATAAACATATATC+CGG - chr7_4:56127595-56127614 None:intergenic 15.0%
!!! GTATATCTGAAATAAATAAA+AGG - chr7_4:56127843-56127862 None:intergenic 15.0%
!!! TGAATTCTAACTAAACATTT+TGG + chr7_4:56125364-56125383 Msa1164450:intron 20.0%
!! ATACTTATGTGATAAGAAAA+AGG - chr7_4:56126000-56126019 None:intergenic 20.0%
!! ATACATTACTGATAATAAAG+TGG + chr7_4:56126551-56126570 Msa1164450:intron 20.0%
!! TATTAGGAATCTATAAATGT+AGG + chr7_4:56126904-56126923 Msa1164450:intron 20.0%
!! ATTAGGAATCTATAAATGTA+GGG + chr7_4:56126905-56126924 Msa1164450:intron 20.0%
!!! CTATAAAATACAAGTTTTCA+TGG - chr7_4:56127292-56127311 None:intergenic 20.0%
!!! CATGAAAACTTGTATTTTAT+AGG + chr7_4:56127290-56127309 Msa1164450:intron 20.0%
!! AAATTGTATAAACCCAAAAT+GGG + chr7_4:56127721-56127740 Msa1164450:intron 20.0%
!! GAAATAAATAAAAGGGATTT+GGG - chr7_4:56127835-56127854 None:intergenic 20.0%
!! TGAAATAAATAAAAGGGATT+TGG - chr7_4:56127836-56127855 None:intergenic 20.0%
! ATCATCCAATGAACAAAAAA+AGG - chr7_4:56125162-56125181 None:intergenic 25.0%
! ATTAACCATGAAATTAGTGA+AGG - chr7_4:56125279-56125298 None:intergenic 25.0%
! TTTCATGGTTAATATAGTAG+AGG + chr7_4:56125286-56125305 Msa1164450:CDS 25.0%
!!! TTTAGATGTTGTTTTCTACT+TGG - chr7_4:56125446-56125465 None:intergenic 25.0%
! ACAACATCTAAATATTCTCA+AGG + chr7_4:56125454-56125473 Msa1164450:CDS 25.0%
! CAACTTGAAACATCTTATAT+TGG - chr7_4:56125563-56125582 None:intergenic 25.0%
!! CAATATAAGATGTTTCAAGT+TGG + chr7_4:56125561-56125580 Msa1164450:intron 25.0%
! AAAACTTGATCCAAAATTGA+AGG + chr7_4:56125657-56125676 Msa1164450:CDS 25.0%
! TTAAAACATAGATAAGAGAG+AGG - chr7_4:56125715-56125734 None:intergenic 25.0%
! TATTTCAGTAGCAAAAGATA+GGG + chr7_4:56126178-56126197 Msa1164450:intron 25.0%
!! TTTCTAATTTAGAGCTTGTT+TGG - chr7_4:56126363-56126382 None:intergenic 25.0%
! ATCAGTAATGTATATCTGTA+TGG - chr7_4:56126544-56126563 None:intergenic 25.0%
!! TTTTTATTCATAATGACCAC+AGG + chr7_4:56126581-56126600 Msa1164450:intron 25.0%
! GTATTAATTACTTTACCCTT+AGG - chr7_4:56126653-56126672 None:intergenic 25.0%
!! TGCTATACATTTGTAGATTT+TGG + chr7_4:56126737-56126756 Msa1164450:intron 25.0%
!! GCTATACATTTGTAGATTTT+GGG + chr7_4:56126738-56126757 Msa1164450:intron 25.0%
! ACCTCAATAAACTGATTATT+AGG + chr7_4:56126888-56126907 Msa1164450:intron 25.0%
! TCCTAATAATCAGTTTATTG+AGG - chr7_4:56126892-56126911 None:intergenic 25.0%
! TTAGGAATCTATAAATGTAG+GGG + chr7_4:56126906-56126925 Msa1164450:intron 25.0%
! ATTCATGGATGAAATATCTA+CGG + chr7_4:56126957-56126976 Msa1164450:CDS 25.0%
! TCAAATAGATTGTAAGTTTC+TGG - chr7_4:56127081-56127100 None:intergenic 25.0%
!!! CTTGAATTTTTCGAATCAAT+TGG + chr7_4:56127159-56127178 Msa1164450:CDS 25.0%
!!! TTGGTTTTAAATGTCCAAAT+AGG + chr7_4:56127178-56127197 Msa1164450:CDS 25.0%
! TTTAAATGTCCAAATAGGAA+AGG + chr7_4:56127183-56127202 Msa1164450:CDS 25.0%
!! ATGGAAATTTTACTAATCGT+TGG + chr7_4:56127446-56127465 Msa1164450:intron 25.0%
!!! GAATTTTAGTTATGAAACTC+CGG + chr7_4:56127476-56127495 Msa1164450:intron 25.0%
! GAAATTGTATAAACCCAAAA+TGG + chr7_4:56127720-56127739 Msa1164450:intron 25.0%
ATGATGAAGAAGCTCTTAAA+TGG + chr7_4:56124862-56124881 Msa1164450:CDS 30.0%
TGATGAAGAAGCTCTTAAAT+GGG + chr7_4:56124863-56124882 Msa1164450:CDS 30.0%
AAAGTTTCTGCTCAAACTTA+AGG + chr7_4:56125043-56125062 Msa1164450:CDS 30.0%
! GCATCTCATTTAAAATCACA+AGG - chr7_4:56125107-56125126 None:intergenic 30.0%
!!! CTACTCCTTTTTTTGTTCAT+TGG + chr7_4:56125154-56125173 Msa1164450:intron 30.0%
AATATTCTCAAGGATGTTAG+TGG + chr7_4:56125464-56125483 Msa1164450:CDS 30.0%
! ACAAAATTCGTATTGATACC+TGG - chr7_4:56125504-56125523 None:intergenic 30.0%
!! ATTCATTGATTTCTCTTTCC+AGG + chr7_4:56125527-56125546 Msa1164450:intron 30.0%
!! TTCATTGATTTCTCTTTCCA+GGG + chr7_4:56125528-56125547 Msa1164450:intron 30.0%
!! TTCAGAATGACATTGCTTTT+AGG + chr7_4:56125589-56125608 Msa1164450:intron 30.0%
! CAATTTTGGATCAAGTTTTC+CGG - chr7_4:56125656-56125675 None:intergenic 30.0%
!! TTCTAGCTAACCTTCAATTT+TGG - chr7_4:56125670-56125689 None:intergenic 30.0%
GATCAAAATGATCTTCACAT+TGG + chr7_4:56125888-56125907 Msa1164450:CDS 30.0%
CTATTTCAGTAGCAAAAGAT+AGG + chr7_4:56126177-56126196 Msa1164450:intron 30.0%
! AATTTAGAGCTTGTTTGGAT+TGG - chr7_4:56126358-56126377 None:intergenic 30.0%
AATGTCAACAATATTACACG+TGG - chr7_4:56126393-56126412 None:intergenic 30.0%
! ATTTGCATGTTTTTCTCTTC+TGG - chr7_4:56126440-56126459 None:intergenic 30.0%
!!! TAAAAGTTTTTTCTACTCGG+TGG + chr7_4:56126502-56126521 Msa1164450:intron 30.0%
! CTGTTATCAAATTTTCCTTC+TGG - chr7_4:56126623-56126642 None:intergenic 30.0%
TGATAACAGATTATGTCCTA+AGG + chr7_4:56126634-56126653 Msa1164450:CDS 30.0%
GATAACAGATTATGTCCTAA+GGG + chr7_4:56126635-56126654 Msa1164450:CDS 30.0%
!!! GATTTGTTTTACCTGTTGTA+AGG - chr7_4:56126836-56126855 None:intergenic 30.0%
!! ACCAACTAAAGCTTTATTCA+TGG + chr7_4:56126942-56126961 Msa1164450:CDS 30.0%
! TCCATGAATAAAGCTTTAGT+TGG - chr7_4:56126946-56126965 None:intergenic 30.0%
TTCATGGATGAAATATCTAC+GGG + chr7_4:56126958-56126977 Msa1164450:CDS 30.0%
! AATAGATTGTAAGTTTCTGG+CGG - chr7_4:56127078-56127097 None:intergenic 30.0%
! AGCTACGAAGCAATATTTTA+TGG + chr7_4:56127427-56127446 Msa1164450:intron 30.0%
TTTACTAATCGTTGGAAATG+AGG + chr7_4:56127454-56127473 Msa1164450:intron 30.0%
! TTTCCGATAACAACTAGTTT+CGG - chr7_4:56127511-56127530 None:intergenic 30.0%
!!! GGTACTATTTTTGAGTTAAC+AGG + chr7_4:56127935-56127954 Msa1164450:CDS 30.0%
!! ATCCTAGGTAATTTTCTAGT+AGG + chr7_4:56128043-56128062 Msa1164450:intron 30.0%
!! TCCTAGGTAATTTTCTAGTA+GGG + chr7_4:56128044-56128063 Msa1164450:intron 30.0%
! GGATTGGTAGTTCATCAATT+TGG + chr7_4:56124790-56124809 Msa1164450:CDS 35.0%
! TTGGTAGTTCATCAATTTGG+AGG + chr7_4:56124793-56124812 Msa1164450:CDS 35.0%
!! TTCCTACTTTTGAACGTTTG+AGG + chr7_4:56124901-56124920 Msa1164450:CDS 35.0%
TTCCTCAAACGTTCAAAAGT+AGG - chr7_4:56124906-56124925 None:intergenic 35.0%
! ACTTTTGAACGTTTGAGGAA+AGG + chr7_4:56124906-56124925 Msa1164450:CDS 35.0%
CTTCTCAATATCGATCTCAA+TGG - chr7_4:56124958-56124977 None:intergenic 35.0%
TCATTGGATGATATCAGAGT+TGG + chr7_4:56125170-56125189 Msa1164450:intron 35.0%
TCGAATCGAACTTCTATTGT+AGG - chr7_4:56125206-56125225 None:intergenic 35.0%
ACCATGAAATTAGTGAAGGT+AGG - chr7_4:56125275-56125294 None:intergenic 35.0%
GTAGATGAAGAGAGTTCAAT+AGG - chr7_4:56125421-56125440 None:intergenic 35.0%
! AATTCGTATTGATACCTGGA+AGG - chr7_4:56125500-56125519 None:intergenic 35.0%
! TGACTTCATGATCAGTTTTC+TGG + chr7_4:56125801-56125820 Msa1164450:intron 35.0%
!! TTCATGATCAGTTTTCTGGT+AGG + chr7_4:56125805-56125824 Msa1164450:intron 35.0%
!! TCATGATCAGTTTTCTGGTA+GGG + chr7_4:56125806-56125825 Msa1164450:intron 35.0%
GTTGACTGTTAGAGAAACTT+TGG + chr7_4:56125914-56125933 Msa1164450:CDS 35.0%
TAGACAAACTAACCATAACG+AGG - chr7_4:56125969-56125988 None:intergenic 35.0%
! ATACACAAGCTGAAGTACTA+AGG + chr7_4:56126061-56126080 Msa1164450:intron 35.0%
AAACTGTGTGGTACAGTTTA+TGG - chr7_4:56126299-56126318 None:intergenic 35.0%
GCATGTTTGAACTTATCTAC+TGG - chr7_4:56126336-56126355 None:intergenic 35.0%
TTCATGTACACATCAAGATC+TGG - chr7_4:56126475-56126494 None:intergenic 35.0%
! ATATGTGCTGATACTGTTGT+GGG + chr7_4:56126768-56126787 Msa1164450:CDS 35.0%
TATAAATGTAGGGGAGATGT+TGG + chr7_4:56126915-56126934 Msa1164450:intron 35.0%
CAATATGTCCACATTCTCAA+AGG + chr7_4:56127024-56127043 Msa1164450:CDS 35.0%
GATAGTCACACTATATACCA+AGG + chr7_4:56127120-56127139 Msa1164450:CDS 35.0%
TAAAAGACCAAGAGCAATAC+TGG + chr7_4:56127322-56127341 Msa1164450:CDS 35.0%
AAAAGACCAAGAGCAATACT+GGG + chr7_4:56127323-56127342 Msa1164450:CDS 35.0%
TAGCCGAAACTAGTTGTTAT+CGG + chr7_4:56127505-56127524 Msa1164450:intron 35.0%
TATACCAGAATACGATAGAC+CGG + chr7_4:56127573-56127592 Msa1164450:intron 35.0%
!! TATAAACCCAAAATGGGTTG+AGG + chr7_4:56127727-56127746 Msa1164450:intron 35.0%
! TTCTAACCTCAACCCATTTT+GGG - chr7_4:56127736-56127755 None:intergenic 35.0%
! TTTCTAACCTCAACCCATTT+TGG - chr7_4:56127737-56127756 None:intergenic 35.0%
CGAGTTATTATACGTCATGA+TGG + chr7_4:56127862-56127881 Msa1164450:CDS 35.0%
! GTCATGATGGTTTTTGATGA+AGG + chr7_4:56127875-56127894 Msa1164450:CDS 35.0%
TCTAGCATGAGTGTTAAACT+CGG - chr7_4:56128022-56128041 None:intergenic 35.0%
!! CCTAGGTAATTTTCTAGTAG+GGG + chr7_4:56128045-56128064 Msa1164450:intron 35.0%
TTTCAATTTGGTATCAGAGC+AGG + chr7_4:56128070-56128089 Msa1164450:intron 35.0%
CTTCTTCATCATCTTCTTGG+TGG - chr7_4:56124854-56124873 None:intergenic 40.0%
GAGCTTCTTCATCATCTTCT+TGG - chr7_4:56124857-56124876 None:intergenic 40.0%
GTTTGCTCACTTCACTTCAA+GGG + chr7_4:56124928-56124947 Msa1164450:CDS 40.0%
TTTGCTCACTTCACTTCAAG+GGG + chr7_4:56124929-56124948 Msa1164450:CDS 40.0%
GAGATCGATATTGAGAAGCT+TGG + chr7_4:56124960-56124979 Msa1164450:CDS 40.0%
!! ACTTGTTAGACTTGCTGAAG+AGG + chr7_4:56125013-56125032 Msa1164450:CDS 40.0%
GCTCAAACTTAAGGATCGAA+TGG + chr7_4:56125052-56125071 Msa1164450:CDS 40.0%
AACTTAAGGATCGAATGGAC+AGG + chr7_4:56125057-56125076 Msa1164450:CDS 40.0%
GCCTACCTTCACTAATTTCA+TGG + chr7_4:56125271-56125290 Msa1164450:CDS 40.0%
GTGGAATATTAAAGCCTTCC+AGG + chr7_4:56125483-56125502 Msa1164450:CDS 40.0%
!! TATATTGGTTCAAGAAGCCC+TGG - chr7_4:56125548-56125567 None:intergenic 40.0%
! AGTGTGGTTTTTCCAGAACT+TGG - chr7_4:56125619-56125638 None:intergenic 40.0%
TCTGGTAGGGTGACTTATAA+TGG + chr7_4:56125819-56125838 Msa1164450:CDS 40.0%
ACATAAGCAGCAGTTCTTTG+GGG - chr7_4:56125867-56125886 None:intergenic 40.0%
CACATAAGCAGCAGTTCTTT+GGG - chr7_4:56125868-56125887 None:intergenic 40.0%
CTTATTACCATAAGCTCGAC+AGG - chr7_4:56126241-56126260 None:intergenic 40.0%
TAAGTACTCACGAAACTGTG+TGG - chr7_4:56126311-56126330 None:intergenic 40.0%
TACACATCAAGATCTGGATC+AGG - chr7_4:56126469-56126488 None:intergenic 40.0%
! GATATGTGCTGATACTGTTG+TGG + chr7_4:56126767-56126786 Msa1164450:CDS 40.0%
GTGGGAAATGCAATGATAAG+AGG + chr7_4:56126786-56126805 Msa1164450:CDS 40.0%
!! GCAATGATAAGAGGTATCTC+TGG + chr7_4:56126795-56126814 Msa1164450:CDS 40.0%
!! ATGATAAGAGGTATCTCTGG+CGG + chr7_4:56126798-56126817 Msa1164450:CDS 40.0%
CAAAAGAAACGCCTTACAAC+AGG + chr7_4:56126822-56126841 Msa1164450:CDS 40.0%
GGATGAAATATCTACGGGTT+TGG + chr7_4:56126963-56126982 Msa1164450:CDS 40.0%
ACACTATATACCAAGGTCCT+CGG + chr7_4:56127127-56127146 Msa1164450:CDS 40.0%
ATGTCCAAATAGGAAAGGAG+TGG + chr7_4:56127188-56127207 Msa1164450:CDS 40.0%
GCGATGATAAAGTATACGAG+AGG + chr7_4:56127370-56127389 Msa1164450:intron 40.0%
ATATCCGGTCTATCGTATTC+TGG - chr7_4:56127580-56127599 None:intergenic 40.0%
ATGCATAACTGAGCGATCAA+GGG - chr7_4:56127697-56127716 None:intergenic 40.0%
TATGCATAACTGAGCGATCA+AGG - chr7_4:56127698-56127717 None:intergenic 40.0%
TTCCATCTATCCTAGGTTGT+AGG - chr7_4:56127790-56127809 None:intergenic 40.0%
CCACTGACGTGTACTTTATA+TGG - chr7_4:56127917-56127936 None:intergenic 40.0%
CCATATAAAGTACACGTCAG+TGG + chr7_4:56127914-56127933 Msa1164450:CDS 40.0%
ATGAGTGTTAAACTCGGCAT+CGG - chr7_4:56128016-56128035 None:intergenic 40.0%
ACACTCATGCTAGATATCCT+AGG + chr7_4:56128028-56128047 Msa1164450:intron 40.0%
CCCCTACTAGAAAATTACCT+AGG - chr7_4:56128048-56128067 None:intergenic 40.0%
!! CTAGTAGGGGTGTTTCAATT+TGG + chr7_4:56128058-56128077 Msa1164450:intron 40.0%
! GGTTTGCTCACTTCACTTCA+AGG + chr7_4:56124927-56124946 Msa1164450:CDS 45.0%
GAGCTTCTGCTTCGATATTC+AGG - chr7_4:56125232-56125251 None:intergenic 45.0%
!! CTTTTAGGTCCTCCAAGTTC+TGG + chr7_4:56125604-56125623 Msa1164450:CDS 45.0%
! GTGGTTTTTCCAGAACTTGG+AGG - chr7_4:56125616-56125635 None:intergenic 45.0%
TGGAAAAACCACACTCCTGT+TGG + chr7_4:56125624-56125643 Msa1164450:CDS 45.0%
CATAAGCAGCAGTTCTTTGG+GGG - chr7_4:56125866-56125885 None:intergenic 45.0%
CCACATAAGCAGCAGTTCTT+TGG - chr7_4:56125869-56125888 None:intergenic 45.0%
! CCAAAGAACTGCTGCTTATG+TGG + chr7_4:56125866-56125885 Msa1164450:CDS 45.0%
! AAACTTTGGCCTTCTCAGCA+AGG + chr7_4:56125928-56125947 Msa1164450:CDS 45.0%
! AACTTTGGCCTTCTCAGCAA+GGG + chr7_4:56125929-56125948 Msa1164450:CDS 45.0%
AAGCTATCCTGTCGAGCTTA+TGG + chr7_4:56126231-56126250 Msa1164450:intron 45.0%
TGTAGCAAATGAAGGCCAGA+AGG + chr7_4:56126605-56126624 Msa1164450:CDS 45.0%
AATGTAGGGGAGATGTTGGT+TGG + chr7_4:56126919-56126938 Msa1164450:intron 45.0%
!! AGATTGTAAGTTTCTGGCGG+CGG - chr7_4:56127075-56127094 None:intergenic 45.0%
CACTATATACCAAGGTCCTC+GGG + chr7_4:56127128-56127147 Msa1164450:CDS 45.0%
TCTGCCACTCCTTTCCTATT+TGG - chr7_4:56127195-56127214 None:intergenic 45.0%
TGTGTTCCCAGTATTGCTCT+TGG - chr7_4:56127332-56127351 None:intergenic 45.0%
CTAGTTTCGGCTAACTAAGC+CGG - chr7_4:56127498-56127517 None:intergenic 45.0%
GGGTTGAGGTTAGAAACAGA+TGG + chr7_4:56127741-56127760 Msa1164450:intron 45.0%
TAGAAACAGATGGCGATCCT+AGG + chr7_4:56127751-56127770 Msa1164450:intron 45.0%
TGCCTACAACCTAGGATAGA+TGG + chr7_4:56127785-56127804 Msa1164450:intron 45.0%
CAGTGAGTTCCATCTATCCT+AGG - chr7_4:56127797-56127816 None:intergenic 45.0%
TGAGTGTTAAACTCGGCATC+GGG - chr7_4:56128015-56128034 None:intergenic 45.0%
!!! TTTTACATTTTAATTTTAAA+GGG + chr7_4:56125395-56125414 Msa1164450:intron 5.0%
GGTGGAGGTAGTTTCAGGAT+TGG + chr7_4:56124774-56124793 Msa1164450:CDS 50.0%
ATCGAAGCAGAAGCTCGTGT+AGG + chr7_4:56125236-56125255 Msa1164450:CDS 50.0%
!! AACCACACTCCTGTTGGCTT+TGG + chr7_4:56125630-56125649 Msa1164450:CDS 50.0%
CATAACGAGGTCCAACTCCT+TGG - chr7_4:56125956-56125975 None:intergenic 50.0%
CAAGGAGTTGGACCTCGTTA+TGG + chr7_4:56125954-56125973 Msa1164450:CDS 50.0%
! CCTTCATTTGCTACAGCCTG+TGG - chr7_4:56126600-56126619 None:intergenic 50.0%
CCACAGGCTGTAGCAAATGA+AGG + chr7_4:56126597-56126616 Msa1164450:intron 50.0%
CCACATTCTCAAAGGAACCG+CGG + chr7_4:56127032-56127051 Msa1164450:CDS 50.0%
AATTCAAGCACGTGTTCCCG+AGG - chr7_4:56127147-56127166 None:intergenic 50.0%
TCCTAGGTTGTAGGCAACCT+CGG - chr7_4:56127781-56127800 None:intergenic 50.0%
GATGAAGGAGCAGAAGTAGC+TGG + chr7_4:56127890-56127909 Msa1164450:CDS 50.0%
! GTCGATTCAGATCGTGCCTT+GGG + chr7_4:56128092-56128111 Msa1164450:CDS 50.0%
TGGAGGGTGGAGGTAGTTTC+AGG + chr7_4:56124769-56124788 Msa1164450:CDS 55.0%
!! ACACTCCTGTTGGCTTTGGC+CGG + chr7_4:56125634-56125653 Msa1164450:CDS 55.0%
! GTTTTCCGGCCAAAGCCAAC+AGG - chr7_4:56125642-56125661 None:intergenic 55.0%
TCCTTGGACCCTTGCTGAGA+AGG - chr7_4:56125940-56125959 None:intergenic 55.0%
TCAGCAAGGGTCCAAGGAGT+TGG + chr7_4:56125942-56125961 Msa1164450:CDS 55.0%
! CCGCGGTTCCTTTGAGAATG+TGG - chr7_4:56127035-56127054 None:intergenic 55.0%
CTGAAGGAGTGAGATCACCG+CGG - chr7_4:56127052-56127071 None:intergenic 55.0%
CTAGGTTGTAGGCAACCTCG+GGG - chr7_4:56127779-56127798 None:intergenic 55.0%
CCTAGGTTGTAGGCAACCTC+GGG - chr7_4:56127780-56127799 None:intergenic 55.0%
! GGTCGATTCAGATCGTGCCT+TGG + chr7_4:56128091-56128110 Msa1164450:CDS 55.0%
GGCCAAAGCCAACAGGAGTG+TGG - chr7_4:56125635-56125654 None:intergenic 60.0%
GCCTTCTCAGCAAGGGTCCA+AGG + chr7_4:56125936-56125955 Msa1164450:CDS 60.0%
!! AAGTTTCTGGCGGCGGCTGA+AGG - chr7_4:56127068-56127087 None:intergenic 60.0%
TAGGCAACCTCGGGGAACCT+AGG - chr7_4:56127771-56127790 None:intergenic 60.0%
CCCGAGGTTGCCTACAACCT+AGG + chr7_4:56127777-56127796 Msa1164450:intron 60.0%
GCACGTGTTCCCGAGGACCT+TGG - chr7_4:56127140-56127159 None:intergenic 65.0%
TGGCGATCCTAGGTTCCCCG+AGG + chr7_4:56127761-56127780 Msa1164450:intron 65.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 56124768 56128121 56124768 ID=Msa1164450;Name=Msa1164450
chr7_4 mRNA 56124768 56128121 56124768 ID=Msa1164450-mRNA-1;Parent=Msa1164450;Name=Msa1164450-mRNA-1;_AED=0.95;_eAED=0.95;_QI=0|0|0|0.16|1|1|12|0|497
chr7_4 exon 56124768 56125078 56124768 ID=Msa1164450-mRNA-1:exon:16699;Parent=Msa1164450-mRNA-1
chr7_4 exon 56125187 56125307 56125187 ID=Msa1164450-mRNA-1:exon:16700;Parent=Msa1164450-mRNA-1
chr7_4 exon 56125416 56125504 56125416 ID=Msa1164450-mRNA-1:exon:16701;Parent=Msa1164450-mRNA-1
chr7_4 exon 56125594 56125678 56125594 ID=Msa1164450-mRNA-1:exon:16702;Parent=Msa1164450-mRNA-1
chr7_4 exon 56125816 56125975 56125816 ID=Msa1164450-mRNA-1:exon:16703;Parent=Msa1164450-mRNA-1
chr7_4 exon 56126419 56126495 56126419 ID=Msa1164450-mRNA-1:exon:16704;Parent=Msa1164450-mRNA-1
chr7_4 exon 56126603 56126656 56126603 ID=Msa1164450-mRNA-1:exon:16705;Parent=Msa1164450-mRNA-1
chr7_4 exon 56126753 56126843 56126753 ID=Msa1164450-mRNA-1:exon:16706;Parent=Msa1164450-mRNA-1
chr7_4 exon 56126926 56127227 56126926 ID=Msa1164450-mRNA-1:exon:16707;Parent=Msa1164450-mRNA-1
chr7_4 exon 56127312 56127380 56127312 ID=Msa1164450-mRNA-1:exon:16708;Parent=Msa1164450-mRNA-1
chr7_4 exon 56127857 56127956 56127857 ID=Msa1164450-mRNA-1:exon:16709;Parent=Msa1164450-mRNA-1
chr7_4 exon 56128087 56128121 56128087 ID=Msa1164450-mRNA-1:exon:16710;Parent=Msa1164450-mRNA-1
chr7_4 CDS 56124768 56125078 56124768 ID=Msa1164450-mRNA-1:cds;Parent=Msa1164450-mRNA-1
chr7_4 CDS 56125187 56125307 56125187 ID=Msa1164450-mRNA-1:cds;Parent=Msa1164450-mRNA-1
chr7_4 CDS 56125416 56125504 56125416 ID=Msa1164450-mRNA-1:cds;Parent=Msa1164450-mRNA-1
chr7_4 CDS 56125594 56125678 56125594 ID=Msa1164450-mRNA-1:cds;Parent=Msa1164450-mRNA-1
chr7_4 CDS 56125816 56125975 56125816 ID=Msa1164450-mRNA-1:cds;Parent=Msa1164450-mRNA-1
chr7_4 CDS 56126419 56126495 56126419 ID=Msa1164450-mRNA-1:cds;Parent=Msa1164450-mRNA-1
chr7_4 CDS 56126603 56126656 56126603 ID=Msa1164450-mRNA-1:cds;Parent=Msa1164450-mRNA-1
chr7_4 CDS 56126753 56126843 56126753 ID=Msa1164450-mRNA-1:cds;Parent=Msa1164450-mRNA-1
chr7_4 CDS 56126926 56127227 56126926 ID=Msa1164450-mRNA-1:cds;Parent=Msa1164450-mRNA-1
chr7_4 CDS 56127312 56127380 56127312 ID=Msa1164450-mRNA-1:cds;Parent=Msa1164450-mRNA-1
chr7_4 CDS 56127857 56127956 56127857 ID=Msa1164450-mRNA-1:cds;Parent=Msa1164450-mRNA-1
chr7_4 CDS 56128087 56128121 56128087 ID=Msa1164450-mRNA-1:cds;Parent=Msa1164450-mRNA-1
Gene Sequence

>Msa1164450

ATGGAGGGTGGAGGTAGTTTCAGGATTGGTAGTTCATCAATTTGGAGGAACAGTGATGCTGCTGAGATTTTTTCAAATTCTTTCCACCAAGAAGATGATGAAGAAGCTCTTAAATGGGCTGCAATTCAGAAACTTCCTACTTTTGAACGTTTGAGGAAAGGTTTGCTCACTTCACTTCAAGGGGAAGCCATTGAGATCGATATTGAGAAGCTTGGACTGCAAGAAAGAAAAGATTTGCTTGAAAGACTTGTTAGACTTGCTGAAGAGGATAATGAAAAGTTTCTGCTCAAACTTAAGGATCGAATGGACAGAGTTGGAATTGATCTTCCTACAATAGAAGTTCGATTCGAGCACCTGAATATCGAAGCAGAAGCTCGTGTAGGAAGCAGATCTTTGCCTACCTTCACTAATTTCATGGTTAATATAGTAGAGGGCCTATTGAACTCTCTTCATCTACTTCCAAGTAGAAAACAACATCTAAATATTCTCAAGGATGTTAGTGGAATATTAAAGCCTTCCAGAATGACATTGCTTTTAGGTCCTCCAAGTTCTGGAAAAACCACACTCCTGTTGGCTTTGGCCGGAAAACTTGATCCAAAATTGAAGTTTTCTGGTAGGGTGACTTATAATGGTCATGAGATGAGTGAATTTGTCCCCCAAAGAACTGCTGCTTATGTGGATCAAAATGATCTTCACATTGGAGAGTTGACTGTTAGAGAAACTTTGGCCTTCTCAGCAAGGGTCCAAGGAGTTGGACCTCGTTATGAGTTGCTAGCAGAATTGTCCAGAAGAGAAAAACATGCAAATATCAAGCCTGATCCAGATCTTGATGTGTACATGAAAGCTGTAGCAAATGAAGGCCAGAAGGAAAATTTGATAACAGATTATGTCCTAAGGATTTTGGGACTAGAGATATGTGCTGATACTGTTGTGGGAAATGCAATGATAAGAGGTATCTCTGGCGGACAAAAGAAACGCCTTACAACAGGGGAGATGTTGGTTGGACCAACTAAAGCTTTATTCATGGATGAAATATCTACGGGTTTGGATAGCTCGACAACTTTTCAAATTGTGAATTCAATGAAGCAATATGTCCACATTCTCAAAGGAACCGCGGTGATCTCACTCCTTCAGCCGCCGCCAGAAACTTACAATCTATTTGACAACATTATTCTACTCTCTGATAGTCACACTATATACCAAGGTCCTCGGGAACACGTGCTTGAATTTTTCGAATCAATTGGTTTTAAATGTCCAAATAGGAAAGGAGTGGCAGATTTTCTGCAAGAAGTGACATCAGTAAAAGACCAAGAGCAATACTGGGAACACAAAGATCAGTCTTATAGATGCGATGATAAAATATACGAGTTATTATACGTCATGATGGTTTTTGATGAAGGAGCAGAAGTAGCTGGACCATATAAAGTACACGTCAGTGGTACTATTTTTGAGTTAACAGAGCAGGTCGATTCAGATCGTGCCTTGGGTCATTAG
Protein sequence

>Msa1164450

MEGGGSFRIGSSSIWRNSDAAEIFSNSFHQEDDEEALKWAAIQKLPTFERLRKGLLTSLQGEAIEIDIEKLGLQERKDLLERLVRLAEEDNEKFLLKLKDRMDRVGIDLPTIEVRFEHLNIEAEARVGSRSLPTFTNFMVNIVEGLLNSLHLLPSRKQHLNILKDVSGILKPSRMTLLLGPPSSGKTTLLLALAGKLDPKLKFSGRVTYNGHEMSEFVPQRTAAYVDQNDLHIGELTVRETLAFSARVQGVGPRYELLAELSRREKHANIKPDPDLDVYMKAVANEGQKENLITDYVLRILGLEICADTVVGNAMIRGISGGQKKRLTTGEMLVGPTKALFMDEISTGLDSSTTFQIVNSMKQYVHILKGTAVISLLQPPPETYNLFDNIILLSDSHTIYQGPREHVLEFFESIGFKCPNRKGVADFLQEVTSVKDQEQYWEHKDQSYRCDDKIYELLYVMMVFDEGAEVAGPYKVHVSGTIFELTEQVDSDRALGH*