Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0716760 | XP_003612025.2 | 94.932 | 296 | 11 | 3 | 1 | 295 | 5 | 297 | 0.0 | 574 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0716760 | sp|Q9ZPW7|ZHD6_ARATH | 48.276 | 232 | 86 | 7 | 72 | 295 | 57 | 262 | 3.82e-60 | 195 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0716760 | G7KDN2 | 94.932 | 296 | 11 | 3 | 1 | 295 | 5 | 297 | 0.0 | 574 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0716760 | TF | zf-HD |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0002930 | Msa0716760 | 0.809359 | 1.967500e-50 | -8.615850e-47 |
| Msa0017510 | Msa0716760 | 0.826593 | 2.491751e-54 | -8.615850e-47 |
| Msa0022640 | Msa0716760 | 0.802550 | 5.320205e-49 | -8.615850e-47 |
| Msa0072370 | Msa0716760 | 0.803151 | 3.996415e-49 | -8.615850e-47 |
| Msa0110970 | Msa0716760 | 0.827221 | 1.763857e-54 | -8.615850e-47 |
| Msa0620240 | Msa0716760 | 0.801467 | 8.881371e-49 | -8.615850e-47 |
| Msa0625890 | Msa0716760 | 0.824153 | 9.419952e-54 | -8.615850e-47 |
| Msa0631120 | Msa0716760 | 0.801449 | 8.957195e-49 | -8.615850e-47 |
| Msa0663680 | Msa0716760 | 0.812145 | 4.913003e-51 | -8.615850e-47 |
| Msa0682620 | Msa0716760 | 0.813590 | 2.370496e-51 | -8.615850e-47 |
| Msa0688770 | Msa0716760 | 0.824361 | 8.417274e-54 | -8.615850e-47 |
| Msa0716760 | Msa0741900 | 0.809706 | 1.656951e-50 | -8.615850e-47 |
| Msa0716760 | Msa0810480 | 0.803309 | 3.707324e-49 | -8.615850e-47 |
| Msa0716760 | Msa0824680 | 0.806165 | 9.390200e-50 | -8.615850e-47 |
| Msa0716760 | Msa0853540 | 0.806446 | 8.194441e-50 | -8.615850e-47 |
| Msa0716760 | Msa0862100 | 0.807801 | 4.232715e-50 | -8.615850e-47 |
| Msa0716760 | Msa0880140 | 0.828981 | 6.646199e-55 | -8.615850e-47 |
| Msa0716760 | Msa1009000 | 0.810255 | 1.262561e-50 | -8.615850e-47 |
| Msa0716760 | Msa1014270 | 0.826483 | 2.646396e-54 | -8.615850e-47 |
| Msa0716760 | Msa1041530 | 0.803069 | 4.156958e-49 | -8.615850e-47 |
| Msa0716760 | Msa1055260 | 0.808773 | 2.626358e-50 | -8.615850e-47 |
| Msa0716760 | Msa1055280 | 0.822783 | 1.969168e-53 | -8.615850e-47 |
| Msa0716760 | Msa1077180 | 0.812754 | 3.616160e-51 | -8.615850e-47 |
| Msa0716760 | Msa1081570 | 0.806876 | 6.648984e-50 | -8.615850e-47 |
| Msa0716760 | Msa1098560 | 0.831316 | 1.788214e-55 | -8.615850e-47 |
| Msa0716760 | Msa1124680 | -0.820588 | 6.335269e-53 | -8.615850e-47 |
| Msa0716760 | Msa1127140 | 0.807437 | 5.056897e-50 | -8.615850e-47 |
| Msa0716760 | Msa1127950 | 0.801251 | 9.834485e-49 | -8.615850e-47 |
| Msa0716760 | Msa1133000 | 0.804106 | 2.532392e-49 | -8.615850e-47 |
| Msa0716760 | Msa1133710 | 0.816186 | 6.297451e-52 | -8.615850e-47 |
| Msa0716760 | Msa1169710 | 0.806381 | 8.458174e-50 | -8.615850e-47 |
| Msa0716760 | Msa1176160 | 0.809074 | 2.264893e-50 | -8.615850e-47 |
| Msa0716760 | Msa1211090 | 0.800718 | 1.263658e-48 | -8.615850e-47 |
| Msa0716760 | Msa1222970 | 0.807057 | 6.086834e-50 | -8.615850e-47 |
| Msa0716760 | Msa1228210 | 0.821904 | 3.150184e-53 | -8.615850e-47 |
| Msa0716760 | Msa1228610 | 0.817235 | 3.663347e-52 | -8.615850e-47 |
| Msa0716760 | Msa1242230 | 0.803795 | 2.938974e-49 | -8.615850e-47 |
| Msa0716760 | Msa1271280 | 0.824406 | 8.213226e-54 | -8.615850e-47 |
| Msa0716760 | Msa1271290 | 0.804895 | 1.734603e-49 | -8.615850e-47 |
| Msa0716760 | Msa1271300 | 0.812011 | 5.252836e-51 | -8.615850e-47 |
| Msa0716760 | Msa1293770 | 0.813891 | 2.034034e-51 | -8.615850e-47 |
| Msa0716760 | Msa1305510 | 0.800230 | 1.588761e-48 | -8.615850e-47 |
| Msa0716760 | Msa1307190 | 0.808935 | 2.424677e-50 | -8.615850e-47 |
| Msa0716760 | Msa1320740 | 0.823109 | 1.653360e-53 | -8.615850e-47 |
| Msa0716760 | Msa1322860 | 0.816362 | 5.749986e-52 | -8.615850e-47 |
| Msa0716760 | Msa1327050 | 0.806293 | 8.824167e-50 | -8.615850e-47 |
| Msa0716760 | Msa1351760 | 0.809504 | 1.831830e-50 | -8.615850e-47 |
| Msa0716760 | Msa1374550 | 0.816861 | 4.444433e-52 | -8.615850e-47 |
| Msa0716760 | Msa1420060 | 0.806536 | 7.842487e-50 | -8.615850e-47 |
| Msa0716760 | Msa1421550 | 0.817063 | 4.004985e-52 | -8.615850e-47 |
| Msa0716760 | Msa1460890 | 0.806162 | 9.405070e-50 | -8.615850e-47 |
| Msa0140780 | Msa0716760 | 0.811059 | 8.461540e-51 | -8.615850e-47 |
| Msa0153420 | Msa0716760 | 0.824834 | 6.510018e-54 | -8.615850e-47 |
| Msa0157290 | Msa0716760 | 0.826704 | 2.343714e-54 | -8.615850e-47 |
| Msa0161680 | Msa0716760 | 0.806312 | 8.745697e-50 | -8.615850e-47 |
| Msa0197230 | Msa0716760 | 0.821278 | 4.394729e-53 | -8.615850e-47 |
| Msa0200260 | Msa0716760 | 0.804117 | 2.519705e-49 | -8.615850e-47 |
| Msa0378340 | Msa0716760 | 0.801153 | 1.030095e-48 | -8.615850e-47 |
| Msa0392420 | Msa0716760 | 0.815394 | 9.456102e-52 | -8.615850e-47 |
| Msa0392460 | Msa0716760 | 0.811825 | 5.768926e-51 | -8.615850e-47 |
| Msa0392490 | Msa0716760 | 0.810438 | 1.152651e-50 | -8.615850e-47 |
| Msa0419970 | Msa0716760 | 0.800491 | 1.405715e-48 | -8.615850e-47 |
| Msa0427690 | Msa0716760 | 0.801883 | 7.296654e-49 | -8.615850e-47 |
| Msa0436500 | Msa0716760 | 0.809775 | 1.601840e-50 | -8.615850e-47 |
| Msa0446090 | Msa0716760 | 0.808479 | 3.034909e-50 | -8.615850e-47 |
| Msa0461720 | Msa0716760 | 0.818224 | 2.190995e-52 | -8.615850e-47 |
| Msa0238890 | Msa0716760 | 0.838473 | 2.815892e-57 | -8.615850e-47 |
| Msa0243100 | Msa0716760 | 0.812501 | 4.106500e-51 | -8.615850e-47 |
| Msa0287650 | Msa0716760 | 0.806370 | 8.500474e-50 | -8.615850e-47 |
| Msa0289890 | Msa0716760 | 0.838637 | 2.554239e-57 | -8.615850e-47 |
| Msa0308830 | Msa0716760 | 0.860586 | 1.862773e-63 | -8.615850e-47 |
| Msa0317920 | Msa0716760 | 0.806437 | 8.228111e-50 | -8.615850e-47 |
| Msa0323610 | Msa0716760 | 0.800373 | 1.485711e-48 | -8.615850e-47 |
| Msa0487570 | Msa0716760 | 0.817804 | 2.727077e-52 | -8.615850e-47 |
| Msa0487630 | Msa0716760 | 0.821485 | 3.938271e-53 | -8.615850e-47 |
| Msa0503580 | Msa0716760 | 0.802359 | 5.825415e-49 | -8.615850e-47 |
| Msa0517340 | Msa0716760 | 0.803156 | 3.987854e-49 | -8.615850e-47 |
| Msa0523460 | Msa0716760 | 0.801814 | 7.538736e-49 | -8.615850e-47 |
| Msa0538060 | Msa0716760 | 0.802130 | 6.490527e-49 | -8.615850e-47 |
| Msa0602250 | Msa0716760 | 0.800600 | 1.335689e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0716760 | MtrunA17_Chr5g0404271 | 94.932 | 296 | 11 | 3 | 1 | 295 | 5 | 297 | 0.0 | 574 |
| Msa0716760 | MtrunA17_Chr4g0076821 | 41.949 | 236 | 100 | 6 | 97 | 295 | 113 | 348 | 4.83e-53 | 177 |
| Msa0716760 | MtrunA17_Chr1g0188441 | 41.089 | 202 | 94 | 4 | 97 | 295 | 9 | 188 | 1.50e-50 | 165 |
| Msa0716760 | MtrunA17_Chr3g0133181 | 41.951 | 205 | 94 | 4 | 97 | 290 | 80 | 270 | 8.49e-45 | 153 |
| Msa0716760 | MtrunA17_Chr7g0217231 | 39.623 | 212 | 102 | 7 | 95 | 294 | 86 | 283 | 9.45e-45 | 155 |
| Msa0716760 | MtrunA17_Chr5g0427051 | 35.833 | 240 | 137 | 5 | 69 | 293 | 30 | 267 | 8.10e-43 | 147 |
| Msa0716760 | MtrunA17_Chr2g0315941 | 34.400 | 250 | 131 | 6 | 60 | 293 | 35 | 267 | 1.10e-40 | 142 |
| Msa0716760 | MtrunA17_Chr8g0367691 | 35.965 | 228 | 120 | 5 | 74 | 287 | 46 | 261 | 7.14e-40 | 140 |
| Msa0716760 | MtrunA17_Chr6g0453231 | 38.462 | 208 | 103 | 5 | 97 | 293 | 91 | 284 | 2.23e-39 | 140 |
| Msa0716760 | MtrunA17_Chr5g0412501 | 63.492 | 63 | 23 | 0 | 231 | 293 | 209 | 271 | 1.16e-23 | 97.4 |
| Msa0716760 | MtrunA17_Chr8g0361671 | 61.404 | 57 | 22 | 0 | 231 | 287 | 271 | 327 | 1.44e-19 | 87.8 |
| Msa0716760 | MtrunA17_Chr8g0361671 | 50.704 | 71 | 26 | 2 | 90 | 158 | 57 | 120 | 4.34e-18 | 83.6 |
| Msa0716760 | MtrunA17_Chr8g0357721 | 28.834 | 163 | 79 | 3 | 106 | 268 | 14 | 139 | 3.00e-19 | 82.0 |
| Msa0716760 | MtrunA17_Chr3g0092371 | 54.688 | 64 | 29 | 0 | 87 | 150 | 10 | 73 | 4.35e-19 | 80.1 |
| Msa0716760 | MtrunA17_Chr6g0479901 | 56.897 | 58 | 24 | 1 | 231 | 287 | 101 | 158 | 6.48e-19 | 82.4 |
| Msa0716760 | MtrunA17_Chr6g0479901 | 61.538 | 52 | 15 | 2 | 97 | 145 | 19 | 68 | 1.91e-15 | 72.8 |
| Msa0716760 | MtrunA17_Chr8g0357741 | 48.387 | 62 | 31 | 1 | 232 | 293 | 36 | 96 | 8.17e-16 | 71.6 |
| Msa0716760 | MtrunA17_Chr4g0060731 | 51.562 | 64 | 26 | 2 | 87 | 149 | 15 | 74 | 8.60e-14 | 65.5 |
| Msa0716760 | MtrunA17_Chr6g0453221 | 57.143 | 49 | 17 | 1 | 97 | 145 | 21 | 65 | 8.16e-13 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0716760 | AT2G18350.1 | 48.276 | 232 | 86 | 7 | 72 | 295 | 57 | 262 | 3.88e-61 | 195 |
| Msa0716760 | AT2G02540.2 | 39.013 | 223 | 89 | 6 | 95 | 293 | 85 | 284 | 3.08e-49 | 166 |
| Msa0716760 | AT2G02540.1 | 39.013 | 223 | 89 | 6 | 95 | 293 | 85 | 284 | 3.08e-49 | 166 |
| Msa0716760 | AT3G50890.1 | 42.640 | 197 | 98 | 4 | 97 | 292 | 60 | 242 | 3.14e-48 | 161 |
| Msa0716760 | AT4G24660.1 | 41.748 | 206 | 84 | 6 | 93 | 293 | 45 | 219 | 1.92e-47 | 158 |
| Msa0716760 | AT4G24660.2 | 41.346 | 208 | 86 | 6 | 93 | 295 | 45 | 221 | 3.24e-47 | 158 |
| Msa0716760 | AT1G14440.1 | 40.385 | 208 | 100 | 5 | 95 | 293 | 88 | 280 | 1.44e-45 | 156 |
| Msa0716760 | AT1G14440.2 | 40.385 | 208 | 100 | 5 | 95 | 293 | 88 | 280 | 1.44e-45 | 156 |
| Msa0716760 | AT1G69600.1 | 36.681 | 229 | 124 | 5 | 77 | 295 | 3 | 220 | 4.42e-44 | 150 |
| Msa0716760 | AT3G28920.1 | 37.864 | 206 | 118 | 3 | 94 | 291 | 49 | 252 | 2.39e-42 | 148 |
| Msa0716760 | AT5G65410.1 | 37.441 | 211 | 106 | 4 | 86 | 292 | 64 | 252 | 3.06e-42 | 147 |
| Msa0716760 | AT5G15210.1 | 38.342 | 193 | 104 | 4 | 97 | 287 | 56 | 235 | 8.15e-38 | 135 |
| Msa0716760 | AT5G60480.1 | 35.681 | 213 | 95 | 6 | 84 | 287 | 24 | 203 | 4.26e-36 | 129 |
| Msa0716760 | AT1G75240.1 | 48.214 | 112 | 40 | 2 | 194 | 292 | 195 | 301 | 8.07e-28 | 109 |
| Msa0716760 | AT5G42780.1 | 30.612 | 196 | 113 | 5 | 97 | 290 | 64 | 238 | 2.54e-27 | 107 |
| Msa0716760 | AT5G39760.1 | 53.846 | 65 | 30 | 0 | 231 | 295 | 200 | 264 | 4.49e-20 | 89.0 |
| Msa0716760 | AT1G14687.1 | 27.692 | 195 | 102 | 6 | 97 | 288 | 7 | 165 | 2.18e-19 | 84.0 |
| Msa0716760 | AT1G74660.2 | 53.448 | 58 | 27 | 0 | 93 | 150 | 35 | 92 | 8.92e-19 | 80.1 |
| Msa0716760 | AT1G74660.1 | 57.407 | 54 | 23 | 0 | 97 | 150 | 39 | 92 | 3.64e-18 | 78.6 |
| Msa0716760 | AT3G28917.1 | 58.182 | 55 | 22 | 1 | 97 | 150 | 33 | 87 | 6.55e-17 | 75.1 |
| Msa0716760 | AT1G18835.1 | 51.852 | 54 | 23 | 1 | 97 | 150 | 26 | 76 | 1.56e-13 | 65.5 |
Find 56 sgRNAs with CRISPR-Local
Find 132 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGATGTCACAAACAACTTT+AGG | 0.291725 | 5_1:-10229445 | Msa0716760:CDS |
| TTAGTAGTAGTGTTATGATT+AGG | 0.305285 | 5_1:+10229331 | None:intergenic |
| TAGTAGTAGTGTTATGATTA+GGG | 0.310997 | 5_1:+10229332 | None:intergenic |
| TTGTTGCTATGATGATAATT+AGG | 0.318608 | 5_1:+10228959 | None:intergenic |
| CCGTCCATGATGATGACTTT+TGG | 0.355768 | 5_1:-10228860 | Msa0716760:CDS |
| AGAGTTTCACAACCTAGTTC+TGG | 0.368324 | 5_1:-10228893 | Msa0716760:CDS |
| AAGATGGTGTTGGAAGATTA+AGG | 0.396177 | 5_1:+10228927 | None:intergenic |
| GTTGTTGCAGCCGTTAGATC+TGG | 0.406325 | 5_1:+10229256 | None:intergenic |
| CTTACCCTCTTCTTCAAAAC+CGG | 0.408989 | 5_1:+10228761 | None:intergenic |
| CGGTTGCTGCGGCGTTTGTA+TGG | 0.409265 | 5_1:+10228781 | None:intergenic |
| ATGGAGTTTGCTGAAAAGAT+TGG | 0.437625 | 5_1:-10228704 | Msa0716760:CDS |
| CATACAAACGCCGCAGCAAC+CGG | 0.441402 | 5_1:-10228780 | Msa0716760:CDS |
| GAGGAATACTATGTTGTTGT+TGG | 0.445811 | 5_1:+10229002 | None:intergenic |
| AGTGAAGATCTCAACATGTT+TGG | 0.446843 | 5_1:-10228815 | Msa0716760:CDS |
| ATGGGAAGCCACGTGGTAGA+TGG | 0.447420 | 5_1:-10229121 | Msa0716760:CDS |
| CGTGGTTTCTCAGACATTCT+CGG | 0.464493 | 5_1:+10229152 | None:intergenic |
| TCAAGTTGGTATCAAGAGAC+AGG | 0.468371 | 5_1:-10228633 | Msa0716760:CDS |
| GGGGTACCTTCTTCACCGCT+TGG | 0.472411 | 5_1:+10229082 | None:intergenic |
| ACTTGAGGTGGTGGTGGAGT+TGG | 0.474110 | 5_1:+10229394 | None:intergenic |
| GAGAAACCACGCGGCAAGCA+TGG | 0.475746 | 5_1:-10229140 | Msa0716760:CDS |
| CAGCACATTTGAAATATTGT+GGG | 0.475954 | 5_1:+10229062 | None:intergenic |
| GCAGCACATTTGAAATATTG+TGG | 0.476946 | 5_1:+10229061 | None:intergenic |
| GATGTTATTTGTTGTGGCTG+AGG | 0.477728 | 5_1:+10229202 | None:intergenic |
| TCTTCACTTGATGATTCAGC+TGG | 0.479858 | 5_1:+10228830 | None:intergenic |
| GTGTGAACTTGAGGTGGTGG+TGG | 0.490980 | 5_1:+10229388 | None:intergenic |
| TTCACAACCTAGTTCTGGAC+AGG | 0.499932 | 5_1:-10228888 | Msa0716760:CDS |
| ATGACAGGTCTTTGAGAAGA+AGG | 0.512659 | 5_1:+10229283 | None:intergenic |
| TTCATGCCAAGCGGTGAAGA+AGG | 0.514566 | 5_1:-10229088 | Msa0716760:CDS |
| GTTGTTGATGTTATTTGTTG+TGG | 0.517906 | 5_1:+10229196 | None:intergenic |
| TGGAGTTTGCTGAAAAGATT+GGG | 0.549528 | 5_1:-10228703 | Msa0716760:CDS |
| AGAAACCACGCGGCAAGCAT+GGG | 0.549901 | 5_1:-10229139 | Msa0716760:CDS |
| GGTGGAACCTGTCCAGAACT+AGG | 0.552234 | 5_1:+10228881 | None:intergenic |
| GTTAGATCTGGATCTATGAC+AGG | 0.562020 | 5_1:+10229268 | None:intergenic |
| GAAGGTGCAAGATGTGGTGG+TGG | 0.572439 | 5_1:+10229301 | None:intergenic |
| TGATCCAAAAGTCATCATCA+TGG | 0.575663 | 5_1:+10228856 | None:intergenic |
| TTCTTCAAAACCGGTTGCTG+CGG | 0.576173 | 5_1:+10228770 | None:intergenic |
| TGAGATGACGAAGATGGTGT+TGG | 0.582966 | 5_1:+10228917 | None:intergenic |
| AATGTGTGAACTTGAGGTGG+TGG | 0.602598 | 5_1:+10229385 | None:intergenic |
| TGTCATAGATCCAGATCTAA+CGG | 0.606727 | 5_1:-10229266 | Msa0716760:CDS |
| AAGACTAATGTGTGAACTTG+AGG | 0.616691 | 5_1:+10229379 | None:intergenic |
| CCAAAAGTCATCATCATGGA+CGG | 0.622115 | 5_1:+10228860 | None:intergenic |
| AGCCACGTGGTAGATGGATG+TGG | 0.625991 | 5_1:-10229115 | Msa0716760:CDS |
| GGCTTCCCATGCTTGCCGCG+TGG | 0.643184 | 5_1:+10229134 | None:intergenic |
| ACTCTTTGAGATGACGAAGA+TGG | 0.644785 | 5_1:+10228911 | None:intergenic |
| GAAGAAGGTGCAAGATGTGG+TGG | 0.651537 | 5_1:+10229298 | None:intergenic |
| AGCACATTTGAAATATTGTG+GGG | 0.654466 | 5_1:+10229063 | None:intergenic |
| ACATGCTGAACATGTTGTTG+AGG | 0.672696 | 5_1:+10228983 | None:intergenic |
| AGTTTGCTGAAAAGATTGGG+TGG | 0.678186 | 5_1:-10228700 | Msa0716760:CDS |
| AAAGTCATCATCATGGACGG+TGG | 0.680716 | 5_1:+10228863 | None:intergenic |
| TGAGAAGAAGGTGCAAGATG+TGG | 0.685772 | 5_1:+10229295 | None:intergenic |
| GGCAAGCATGGGAAGCCACG+TGG | 0.697743 | 5_1:-10229128 | Msa0716760:CDS |
| ACTAATGTGTGAACTTGAGG+TGG | 0.703165 | 5_1:+10229382 | None:intergenic |
| CACCACATCCATCTACCACG+TGG | 0.722647 | 5_1:+10229113 | None:intergenic |
| TATCATCATAGCAACAACAA+CGG | 0.730770 | 5_1:-10228953 | Msa0716760:CDS |
| TGTGGTGAATTCATGCCAAG+CGG | 0.769326 | 5_1:-10229097 | Msa0716760:CDS |
| AGAATGTCTGAGAAACCACG+CGG | 0.882510 | 5_1:-10229149 | Msa0716760:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | TAGTAGTAGTGTTATGATTA+GGG | + | chr5_1:10228690-10228709 | None:intergenic | 25.0% |
| ! | TTAGTAGTAGTGTTATGATT+AGG | + | chr5_1:10228691-10228710 | None:intergenic | 25.0% |
| !! | TATGTTTTCGATGGAAATTA+CGG | + | chr5_1:10228996-10229015 | None:intergenic | 25.0% |
| ! | TTGTTGCTATGATGATAATT+AGG | + | chr5_1:10229063-10229082 | None:intergenic | 25.0% |
| ! | TAGTAGTAGTGTTATGATTA+GGG | + | chr5_1:10228690-10228709 | None:intergenic | 25.0% |
| ! | TTAGTAGTAGTGTTATGATT+AGG | + | chr5_1:10228691-10228710 | None:intergenic | 25.0% |
| !! | TATGTTTTCGATGGAAATTA+CGG | + | chr5_1:10228996-10229015 | None:intergenic | 25.0% |
| ! | TTGTTGCTATGATGATAATT+AGG | + | chr5_1:10229063-10229082 | None:intergenic | 25.0% |
| ! | GTTGTTGATGTTATTTGTTG+TGG | + | chr5_1:10228826-10228845 | None:intergenic | 30.0% |
| ! | AGCACATTTGAAATATTGTG+GGG | + | chr5_1:10228959-10228978 | None:intergenic | 30.0% |
| ! | CAGCACATTTGAAATATTGT+GGG | + | chr5_1:10228960-10228979 | None:intergenic | 30.0% |
| TATCATCATAGCAACAACAA+CGG | - | chr5_1:10229066-10229085 | Msa0716760:CDS | 30.0% | |
| ! | GTTGTTGATGTTATTTGTTG+TGG | + | chr5_1:10228826-10228845 | None:intergenic | 30.0% |
| ! | AGCACATTTGAAATATTGTG+GGG | + | chr5_1:10228959-10228978 | None:intergenic | 30.0% |
| ! | CAGCACATTTGAAATATTGT+GGG | + | chr5_1:10228960-10228979 | None:intergenic | 30.0% |
| TATCATCATAGCAACAACAA+CGG | - | chr5_1:10229066-10229085 | Msa0716760:CDS | 30.0% | |
| AAGACTAATGTGTGAACTTG+AGG | + | chr5_1:10228643-10228662 | None:intergenic | 35.0% | |
| ! | TGATTAGGGTGTGAATTTTG+AGG | + | chr5_1:10228676-10228695 | None:intergenic | 35.0% |
| TGTCATAGATCCAGATCTAA+CGG | - | chr5_1:10228753-10228772 | Msa0716760:CDS | 35.0% | |
| ! | GCAGCACATTTGAAATATTG+TGG | + | chr5_1:10228961-10228980 | None:intergenic | 35.0% |
| ! | GTTGTTGGATATGTTTTCGA+TGG | + | chr5_1:10229005-10229024 | None:intergenic | 35.0% |
| GAGGAATACTATGTTGTTGT+TGG | + | chr5_1:10229020-10229039 | None:intergenic | 35.0% | |
| ! | AAGATGGTGTTGGAAGATTA+AGG | + | chr5_1:10229095-10229114 | None:intergenic | 35.0% |
| TGATCCAAAAGTCATCATCA+TGG | + | chr5_1:10229166-10229185 | None:intergenic | 35.0% | |
| AGTGAAGATCTCAACATGTT+TGG | - | chr5_1:10229204-10229223 | Msa0716760:CDS | 35.0% | |
| TCTCACAGCAACAAAAAGAT+AGG | - | chr5_1:10229289-10229308 | Msa0716760:CDS | 35.0% | |
| GCAACAAAAAGATAGGATGA+TGG | - | chr5_1:10229296-10229315 | Msa0716760:CDS | 35.0% | |
| !! | ATGGAGTTTGCTGAAAAGAT+TGG | - | chr5_1:10229315-10229334 | Msa0716760:CDS | 35.0% |
| !! | TGGAGTTTGCTGAAAAGATT+GGG | - | chr5_1:10229316-10229335 | Msa0716760:CDS | 35.0% |
| !!! | CAACAGTTTTGTTCTCAAGT+TGG | - | chr5_1:10229372-10229391 | Msa0716760:CDS | 35.0% |
| AAGACTAATGTGTGAACTTG+AGG | + | chr5_1:10228643-10228662 | None:intergenic | 35.0% | |
| ! | TGATTAGGGTGTGAATTTTG+AGG | + | chr5_1:10228676-10228695 | None:intergenic | 35.0% |
| TGTCATAGATCCAGATCTAA+CGG | - | chr5_1:10228753-10228772 | Msa0716760:CDS | 35.0% | |
| ! | GCAGCACATTTGAAATATTG+TGG | + | chr5_1:10228961-10228980 | None:intergenic | 35.0% |
| ! | GTTGTTGGATATGTTTTCGA+TGG | + | chr5_1:10229005-10229024 | None:intergenic | 35.0% |
| GAGGAATACTATGTTGTTGT+TGG | + | chr5_1:10229020-10229039 | None:intergenic | 35.0% | |
| ! | AAGATGGTGTTGGAAGATTA+AGG | + | chr5_1:10229095-10229114 | None:intergenic | 35.0% |
| TGATCCAAAAGTCATCATCA+TGG | + | chr5_1:10229166-10229185 | None:intergenic | 35.0% | |
| AGTGAAGATCTCAACATGTT+TGG | - | chr5_1:10229204-10229223 | Msa0716760:CDS | 35.0% | |
| TCTCACAGCAACAAAAAGAT+AGG | - | chr5_1:10229289-10229308 | Msa0716760:CDS | 35.0% | |
| GCAACAAAAAGATAGGATGA+TGG | - | chr5_1:10229296-10229315 | Msa0716760:CDS | 35.0% | |
| !! | ATGGAGTTTGCTGAAAAGAT+TGG | - | chr5_1:10229315-10229334 | Msa0716760:CDS | 35.0% |
| !! | TGGAGTTTGCTGAAAAGATT+GGG | - | chr5_1:10229316-10229335 | Msa0716760:CDS | 35.0% |
| !!! | CAACAGTTTTGTTCTCAAGT+TGG | - | chr5_1:10229372-10229391 | Msa0716760:CDS | 35.0% |
| ACTAATGTGTGAACTTGAGG+TGG | + | chr5_1:10228640-10228659 | None:intergenic | 40.0% | |
| !!! | TAGGGTGTGAATTTTGAGGT+GGG | + | chr5_1:10228672-10228691 | None:intergenic | 40.0% |
| !! | TTAGGGTGTGAATTTTGAGG+TGG | + | chr5_1:10228673-10228692 | None:intergenic | 40.0% |
| ! | ATGACAGGTCTTTGAGAAGA+AGG | + | chr5_1:10228739-10228758 | None:intergenic | 40.0% |
| GTTAGATCTGGATCTATGAC+AGG | + | chr5_1:10228754-10228773 | None:intergenic | 40.0% | |
| !! | GATGTTATTTGTTGTGGCTG+AGG | + | chr5_1:10228820-10228839 | None:intergenic | 40.0% |
| ACATGCTGAACATGTTGTTG+AGG | + | chr5_1:10229039-10229058 | None:intergenic | 40.0% | |
| !! | ACTCTTTGAGATGACGAAGA+TGG | + | chr5_1:10229111-10229130 | None:intergenic | 40.0% |
| AGAGTTTCACAACCTAGTTC+TGG | - | chr5_1:10229126-10229145 | Msa0716760:CDS | 40.0% | |
| CCAAAAGTCATCATCATGGA+CGG | + | chr5_1:10229162-10229181 | None:intergenic | 40.0% | |
| ! | TCTTCACTTGATGATTCAGC+TGG | + | chr5_1:10229192-10229211 | None:intergenic | 40.0% |
| CTTACCCTCTTCTTCAAAAC+CGG | + | chr5_1:10229261-10229280 | None:intergenic | 40.0% | |
| !! | AGTTTGCTGAAAAGATTGGG+TGG | - | chr5_1:10229319-10229338 | Msa0716760:CDS | 40.0% |
| !! | TCAAGTTGGTATCAAGAGAC+AGG | - | chr5_1:10229386-10229405 | Msa0716760:CDS | 40.0% |
| ACTAATGTGTGAACTTGAGG+TGG | + | chr5_1:10228640-10228659 | None:intergenic | 40.0% | |
| !!! | TAGGGTGTGAATTTTGAGGT+GGG | + | chr5_1:10228672-10228691 | None:intergenic | 40.0% |
| !! | TTAGGGTGTGAATTTTGAGG+TGG | + | chr5_1:10228673-10228692 | None:intergenic | 40.0% |
| ! | ATGACAGGTCTTTGAGAAGA+AGG | + | chr5_1:10228739-10228758 | None:intergenic | 40.0% |
| GTTAGATCTGGATCTATGAC+AGG | + | chr5_1:10228754-10228773 | None:intergenic | 40.0% | |
| !! | GATGTTATTTGTTGTGGCTG+AGG | + | chr5_1:10228820-10228839 | None:intergenic | 40.0% |
| ACATGCTGAACATGTTGTTG+AGG | + | chr5_1:10229039-10229058 | None:intergenic | 40.0% | |
| !! | ACTCTTTGAGATGACGAAGA+TGG | + | chr5_1:10229111-10229130 | None:intergenic | 40.0% |
| AGAGTTTCACAACCTAGTTC+TGG | - | chr5_1:10229126-10229145 | Msa0716760:CDS | 40.0% | |
| CCAAAAGTCATCATCATGGA+CGG | + | chr5_1:10229162-10229181 | None:intergenic | 40.0% | |
| ! | TCTTCACTTGATGATTCAGC+TGG | + | chr5_1:10229192-10229211 | None:intergenic | 40.0% |
| CTTACCCTCTTCTTCAAAAC+CGG | + | chr5_1:10229261-10229280 | None:intergenic | 40.0% | |
| !! | AGTTTGCTGAAAAGATTGGG+TGG | - | chr5_1:10229319-10229338 | Msa0716760:CDS | 40.0% |
| !! | TCAAGTTGGTATCAAGAGAC+AGG | - | chr5_1:10229386-10229405 | Msa0716760:CDS | 40.0% |
| AATGTGTGAACTTGAGGTGG+TGG | + | chr5_1:10228637-10228656 | None:intergenic | 45.0% | |
| ! | TGAGAAGAAGGTGCAAGATG+TGG | + | chr5_1:10228727-10228746 | None:intergenic | 45.0% |
| CGTGGTTTCTCAGACATTCT+CGG | + | chr5_1:10228870-10228889 | None:intergenic | 45.0% | |
| AGAATGTCTGAGAAACCACG+CGG | - | chr5_1:10228870-10228889 | Msa0716760:CDS | 45.0% | |
| TGTGGTGAATTCATGCCAAG+CGG | - | chr5_1:10228922-10228941 | Msa0716760:CDS | 45.0% | |
| TGAGATGACGAAGATGGTGT+TGG | + | chr5_1:10229105-10229124 | None:intergenic | 45.0% | |
| !! | TTCACAACCTAGTTCTGGAC+AGG | - | chr5_1:10229131-10229150 | Msa0716760:CDS | 45.0% |
| AAAGTCATCATCATGGACGG+TGG | + | chr5_1:10229159-10229178 | None:intergenic | 45.0% | |
| !! | CCGTCCATGATGATGACTTT+TGG | - | chr5_1:10229159-10229178 | Msa0716760:CDS | 45.0% |
| TTCTTCAAAACCGGTTGCTG+CGG | + | chr5_1:10229252-10229271 | None:intergenic | 45.0% | |
| !!! | AGCAACCGGTTTTGAAGAAG+AGG | - | chr5_1:10229253-10229272 | Msa0716760:CDS | 45.0% |
| !!! | GCAACCGGTTTTGAAGAAGA+GGG | - | chr5_1:10229254-10229273 | Msa0716760:CDS | 45.0% |
| !!! | CGGTTTTGAAGAAGAGGGTA+AGG | - | chr5_1:10229259-10229278 | Msa0716760:CDS | 45.0% |
| AATGTGTGAACTTGAGGTGG+TGG | + | chr5_1:10228637-10228656 | None:intergenic | 45.0% | |
| ! | TGAGAAGAAGGTGCAAGATG+TGG | + | chr5_1:10228727-10228746 | None:intergenic | 45.0% |
| CGTGGTTTCTCAGACATTCT+CGG | + | chr5_1:10228870-10228889 | None:intergenic | 45.0% | |
| AGAATGTCTGAGAAACCACG+CGG | - | chr5_1:10228870-10228889 | Msa0716760:CDS | 45.0% | |
| TGTGGTGAATTCATGCCAAG+CGG | - | chr5_1:10228922-10228941 | Msa0716760:CDS | 45.0% | |
| TGAGATGACGAAGATGGTGT+TGG | + | chr5_1:10229105-10229124 | None:intergenic | 45.0% | |
| !! | TTCACAACCTAGTTCTGGAC+AGG | - | chr5_1:10229131-10229150 | Msa0716760:CDS | 45.0% |
| AAAGTCATCATCATGGACGG+TGG | + | chr5_1:10229159-10229178 | None:intergenic | 45.0% | |
| !! | CCGTCCATGATGATGACTTT+TGG | - | chr5_1:10229159-10229178 | Msa0716760:CDS | 45.0% |
| TTCTTCAAAACCGGTTGCTG+CGG | + | chr5_1:10229252-10229271 | None:intergenic | 45.0% | |
| !!! | AGCAACCGGTTTTGAAGAAG+AGG | - | chr5_1:10229253-10229272 | Msa0716760:CDS | 45.0% |
| !!! | GCAACCGGTTTTGAAGAAGA+GGG | - | chr5_1:10229254-10229273 | Msa0716760:CDS | 45.0% |
| !!! | CGGTTTTGAAGAAGAGGGTA+AGG | - | chr5_1:10229259-10229278 | Msa0716760:CDS | 45.0% |
| ! | GAAGAAGGTGCAAGATGTGG+TGG | + | chr5_1:10228724-10228743 | None:intergenic | 50.0% |
| GTTGTTGCAGCCGTTAGATC+TGG | + | chr5_1:10228766-10228785 | None:intergenic | 50.0% | |
| TTCATGCCAAGCGGTGAAGA+AGG | - | chr5_1:10228931-10228950 | Msa0716760:CDS | 50.0% | |
| ! | GAAGAAGGTGCAAGATGTGG+TGG | + | chr5_1:10228724-10228743 | None:intergenic | 50.0% |
| GTTGTTGCAGCCGTTAGATC+TGG | + | chr5_1:10228766-10228785 | None:intergenic | 50.0% | |
| TTCATGCCAAGCGGTGAAGA+AGG | - | chr5_1:10228931-10228950 | Msa0716760:CDS | 50.0% | |
| !! | ACTTGAGGTGGTGGTGGAGT+TGG | + | chr5_1:10228628-10228647 | None:intergenic | 55.0% |
| ! | GTGTGAACTTGAGGTGGTGG+TGG | + | chr5_1:10228634-10228653 | None:intergenic | 55.0% |
| ! | GAAGGTGCAAGATGTGGTGG+TGG | + | chr5_1:10228721-10228740 | None:intergenic | 55.0% |
| AGAAACCACGCGGCAAGCAT+GGG | - | chr5_1:10228880-10228899 | Msa0716760:CDS | 55.0% | |
| ATGGGAAGCCACGTGGTAGA+TGG | - | chr5_1:10228898-10228917 | Msa0716760:CDS | 55.0% | |
| AGCCACGTGGTAGATGGATG+TGG | - | chr5_1:10228904-10228923 | Msa0716760:CDS | 55.0% | |
| CACCACATCCATCTACCACG+TGG | + | chr5_1:10228909-10228928 | None:intergenic | 55.0% | |
| GGTGGAACCTGTCCAGAACT+AGG | + | chr5_1:10229141-10229160 | None:intergenic | 55.0% | |
| CATACAAACGCCGCAGCAAC+CGG | - | chr5_1:10229239-10229258 | Msa0716760:CDS | 55.0% | |
| !! | ACTTGAGGTGGTGGTGGAGT+TGG | + | chr5_1:10228628-10228647 | None:intergenic | 55.0% |
| ! | GTGTGAACTTGAGGTGGTGG+TGG | + | chr5_1:10228634-10228653 | None:intergenic | 55.0% |
| ! | GAAGGTGCAAGATGTGGTGG+TGG | + | chr5_1:10228721-10228740 | None:intergenic | 55.0% |
| AGAAACCACGCGGCAAGCAT+GGG | - | chr5_1:10228880-10228899 | Msa0716760:CDS | 55.0% | |
| ATGGGAAGCCACGTGGTAGA+TGG | - | chr5_1:10228898-10228917 | Msa0716760:CDS | 55.0% | |
| AGCCACGTGGTAGATGGATG+TGG | - | chr5_1:10228904-10228923 | Msa0716760:CDS | 55.0% | |
| CACCACATCCATCTACCACG+TGG | + | chr5_1:10228909-10228928 | None:intergenic | 55.0% | |
| GGTGGAACCTGTCCAGAACT+AGG | + | chr5_1:10229141-10229160 | None:intergenic | 55.0% | |
| CATACAAACGCCGCAGCAAC+CGG | - | chr5_1:10229239-10229258 | Msa0716760:CDS | 55.0% | |
| GAGAAACCACGCGGCAAGCA+TGG | - | chr5_1:10228879-10228898 | Msa0716760:CDS | 60.0% | |
| ! | GGGGTACCTTCTTCACCGCT+TGG | + | chr5_1:10228940-10228959 | None:intergenic | 60.0% |
| CGGTTGCTGCGGCGTTTGTA+TGG | + | chr5_1:10229241-10229260 | None:intergenic | 60.0% | |
| GAGAAACCACGCGGCAAGCA+TGG | - | chr5_1:10228879-10228898 | Msa0716760:CDS | 60.0% | |
| ! | GGGGTACCTTCTTCACCGCT+TGG | + | chr5_1:10228940-10228959 | None:intergenic | 60.0% |
| CGGTTGCTGCGGCGTTTGTA+TGG | + | chr5_1:10229241-10229260 | None:intergenic | 60.0% | |
| GGCAAGCATGGGAAGCCACG+TGG | - | chr5_1:10228891-10228910 | Msa0716760:CDS | 65.0% | |
| GGCAAGCATGGGAAGCCACG+TGG | - | chr5_1:10228891-10228910 | Msa0716760:CDS | 65.0% | |
| GGCTTCCCATGCTTGCCGCG+TGG | + | chr5_1:10228888-10228907 | None:intergenic | 70.0% | |
| GGCTTCCCATGCTTGCCGCG+TGG | + | chr5_1:10228888-10228907 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 10228577 | 10229464 | 10228577 | ID=Msa0716760;Name=Msa0716760 |
| chr5_1 | mRNA | 10228577 | 10229464 | 10228577 | ID=Msa0716760-mRNA-1;Parent=Msa0716760;Name=Msa0716760-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|-1|0|1|-1|1|1|0|295 |
| chr5_1 | exon | 10228577 | 10229464 | 10228577 | ID=Msa0716760-mRNA-1:exon:4120;Parent=Msa0716760-mRNA-1 |
| chr5_1 | CDS | 10228577 | 10229464 | 10228577 | ID=Msa0716760-mRNA-1:cds;Parent=Msa0716760-mRNA-1 |
| Gene Sequence |
| Protein sequence |
