AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0645460


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0645460 MtrunA17_Chr4g0033181 93.237 207 11 1 9 212 5 211 4.78e-142 396
Msa0645460 MtrunA17_Chr3g0118651 49.306 144 63 3 70 212 72 206 8.94e-38 139
Msa0645460 MtrunA17_Chr3g0118641 44.785 163 80 3 51 212 52 205 2.64e-36 134
Msa0645460 MtrunA17_Chr3g0118621 45.070 142 76 2 71 212 28 167 1.50e-30 118
Msa0645460 MtrunA17_Chr8g0344201 38.732 142 81 3 75 212 90 229 6.22e-26 104
Msa0645460 MtrunA17_Chr8g0377101 31.469 143 93 3 73 212 77 217 6.90e-18 81.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0645460 AT1G17420.1 39.216 153 87 3 64 212 74 224 2.14e-28 112
Msa0645460 AT1G72520.1 37.324 142 83 3 75 212 91 230 5.16e-26 105
Msa0645460 AT3G45140.1 32.121 165 100 5 50 212 47 201 4.56e-22 94.0
Msa0645460 AT1G67560.1 31.469 143 92 4 73 212 79 218 3.07e-14 71.2

Find 41 sgRNAs with CRISPR-Local

Find 152 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACAACCTCCTTTGTTTCTTT+TGG 0.222665 4_3:-50738218 None:intergenic
ATAAAGCAAATTGTTCTTGA+TGG 0.271031 4_3:+50741561 Msa0645460:CDS
TTTGAAGTACCAGGAAGTTT+TGG 0.287906 4_3:+50741489 Msa0645460:CDS
GGATAATGATGAAACCTTAT+TGG 0.288513 4_3:-50741670 None:intergenic
TTGTTCAAGATGAGACAATT+TGG 0.358818 4_3:-50738123 None:intergenic
ATCCAACATGAAAACATGTT+TGG 0.381038 4_3:-50738173 None:intergenic
TTGTGGAAAATGAGCATAGA+AGG 0.384517 4_3:+50741529 Msa0645460:CDS
CCAATATCTCCAAAACTTCC+TGG 0.404847 4_3:-50741498 None:intergenic
GTTCTTGATGGCTTTCTCAC+TGG 0.412239 4_3:+50741573 Msa0645460:CDS
ATCATCAGGGTTGTCATGCT+TGG 0.413714 4_3:-50741631 None:intergenic
TGATGACATAACCGATTTGT+TGG 0.420284 4_3:+50738389 Msa0645460:CDS
GTTGGGTAAATCAATTCTCT+TGG 0.421329 4_3:+50738407 Msa0645460:CDS
AAAATGACCCTCTTATCATC+AGG 0.437774 4_3:-50741645 None:intergenic
AAGCCATGTCTCCATGGTAT+TGG 0.449477 4_3:+50738144 Msa0645460:CDS
GATGACATAACCGATTTGTT+GGG 0.451366 4_3:+50738390 Msa0645460:CDS
AATTGATTTACCCAACAAAT+CGG 0.464268 4_3:-50738400 None:intergenic
CTTCCACTGATCTATGCGTC+TGG 0.491600 4_3:-50741446 None:intergenic
GTTAGCTCCGAGCTAGATCC+CGG 0.491907 4_3:+50738435 Msa0645460:CDS
ATGACAACCCTGATGATAAG+AGG 0.495085 4_3:+50741637 Msa0645460:CDS
GAGACAAAATTGGAGAAGGA+AGG 0.497417 4_3:+50741405 Msa0645460:intron
GAGAAAAGTCCTCCAACTGT+TGG 0.515763 4_3:-50738342 None:intergenic
TCAGAAATGGCTATAGAAAG+AGG 0.531378 4_3:+50738363 Msa0645460:CDS
ACTGTTCAACCAACAGTTGG+AGG 0.537630 4_3:+50738333 Msa0645460:CDS
TTTGGTTACTTCCAATACCA+TGG 0.556225 4_3:-50738155 None:intergenic
TTGGAGAAGGAAGGAATCAA+AGG 0.560037 4_3:+50741414 Msa0645460:CDS
CTTCCAATACCATGGAGACA+TGG 0.561407 4_3:-50738147 None:intergenic
AGATATTGGTGCAGTTCTTG+TGG 0.562515 4_3:+50741512 Msa0645460:CDS
AAAAGAGACAAAATTGGAGA+AGG 0.563624 4_3:+50741401 Msa0645460:intron
TGACTTACCGGGATCTAGCT+CGG 0.577812 4_3:-50738442 None:intergenic
CAGAAATGGCTATAGAAAGA+GGG 0.580132 4_3:+50738364 Msa0645460:CDS
TTGAACAAGCCATGTCTCCA+TGG 0.586444 4_3:+50738138 Msa0645460:CDS
GTTACTGTTCAACCAACAGT+TGG 0.586551 4_3:+50738330 Msa0645460:CDS
CCACTGATCTATGCGTCTGG+TGG 0.602891 4_3:-50741443 None:intergenic
AAATGACCCTCTTATCATCA+GGG 0.603935 4_3:-50741644 None:intergenic
TGTGGAAAATGAGCATAGAA+GGG 0.608699 4_3:+50741530 Msa0645460:CDS
GAAGCTGAATTTGAAGTACC+AGG 0.611074 4_3:+50741480 Msa0645460:CDS
TGACAACCCTGATGATAAGA+GGG 0.622995 4_3:+50741638 Msa0645460:CDS
TCATAAACCAAAAGAAACAA+AGG 0.629237 4_3:+50738211 Msa0645460:CDS
CCACCAGACGCATAGATCAG+TGG 0.649521 4_3:+50741443 Msa0645460:CDS
TAAACCAAAAGAAACAAAGG+AGG 0.689233 4_3:+50738214 Msa0645460:CDS
TGTTGGTTGAACAGTAACTG+TGG 0.746011 4_3:-50738325 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATAAAATAATTTAAATAAA+GGG - chr4_3:50739478-50739497 None:intergenic 0.0%
!!! CATGTTTTTAAAAAAAATTA+GGG + chr4_3:50738919-50738938 Msa0645460:intron 10.0%
!!! TAATTTTATTTAATTACTAG+AGG + chr4_3:50739151-50739170 Msa0645460:intron 10.0%
!! TAAATTATTAATTAGAAAGA+TGG - chr4_3:50739390-50739409 None:intergenic 10.0%
!! TAATTAAATCTCATTAAAAT+AGG + chr4_3:50739670-50739689 Msa0645460:intron 10.0%
!!! AAAAAATGATCAAATATTTT+TGG - chr4_3:50739762-50739781 None:intergenic 10.0%
!!! AATATTTGATCATTTTTTTA+AGG + chr4_3:50739764-50739783 Msa0645460:intron 10.0%
!!! ATCAATTTTAATATATACAA+TGG - chr4_3:50739831-50739850 None:intergenic 10.0%
!! ATATAGAAAAAAATTGTTTA+AGG + chr4_3:50740297-50740316 Msa0645460:intron 10.0%
!! TATAGAAAAAAATTGTTTAA+GGG + chr4_3:50740298-50740317 Msa0645460:intron 10.0%
!! TTTGTTAATTATTTAATTGT+TGG - chr4_3:50740725-50740744 None:intergenic 10.0%
!!! CAATTAATTTTATTTTTGTT+TGG - chr4_3:50741317-50741336 None:intergenic 10.0%
!! TTAAATAATCCGTAAAAAAT+CGG - chr4_3:50738621-50738640 None:intergenic 15.0%
!!! CCTAATTTTTTTTAAAAACA+TGG - chr4_3:50738921-50738940 None:intergenic 15.0%
!!! CCATGTTTTTAAAAAAAATT+AGG + chr4_3:50738918-50738937 Msa0645460:intron 15.0%
!!! TATAGAAAAACTTTTTTTTC+AGG - chr4_3:50739312-50739331 None:intergenic 15.0%
!! TATGTATCATATTTATATAC+AGG - chr4_3:50739421-50739440 None:intergenic 15.0%
!! GTTTAAATAAAGGATAAAAA+TGG - chr4_3:50739604-50739623 None:intergenic 15.0%
!!! AATATTTTTGGCAAATAATA+AGG - chr4_3:50739750-50739769 None:intergenic 15.0%
!! TTCATTAGCAATATTATAAA+AGG + chr4_3:50739928-50739947 Msa0645460:intron 15.0%
!! CAATATTATCTATACTATAT+GGG - chr4_3:50740371-50740390 None:intergenic 15.0%
!! ACAATATTATCTATACTATA+TGG - chr4_3:50740372-50740391 None:intergenic 15.0%
!! ACAAAATAAAAGATTATGAA+AGG - chr4_3:50741074-50741093 None:intergenic 15.0%
!!! TTTTATTTTGTGTTTTGATT+TGG + chr4_3:50741083-50741102 Msa0645460:intron 15.0%
!!! TTAATTGACCTTTTTTTTTT+AGG + chr4_3:50741330-50741349 Msa0645460:intron 15.0%
!!! TAATTGACCTTTTTTTTTTA+GGG + chr4_3:50741331-50741350 Msa0645460:intron 15.0%
!! ATTAATTCCCTAAAAAAAAA+AGG - chr4_3:50741341-50741360 None:intergenic 15.0%
!!! TTTTTTTTCCTAAAGCAATA+AGG + chr4_3:50738590-50738609 Msa0645460:intron 20.0%
!! TTGAAGAAAACTACATTTAA+GGG - chr4_3:50739030-50739049 None:intergenic 20.0%
!! TTTGAAGAAAACTACATTTA+AGG - chr4_3:50739031-50739050 None:intergenic 20.0%
!! TATAGAAAGAGATATCAATT+TGG + chr4_3:50739228-50739247 Msa0645460:intron 20.0%
!! ATCATATTTATATACAGGTA+TGG - chr4_3:50739416-50739435 None:intergenic 20.0%
!! AATATTATCTAATTGTTGTG+TGG - chr4_3:50739701-50739720 None:intergenic 20.0%
!! TAACGCGTATAAATTATTAA+CGG + chr4_3:50740102-50740121 Msa0645460:intron 20.0%
!!! AAGATAAACATAGTCTTTTT+GGG - chr4_3:50740207-50740226 None:intergenic 20.0%
!!! AAAGATAAACATAGTCTTTT+TGG - chr4_3:50740208-50740227 None:intergenic 20.0%
!! ATTACTAACATTATCAACAT+TGG + chr4_3:50740523-50740542 Msa0645460:intron 20.0%
!! ATATTCATAACTATCAACAT+TGG + chr4_3:50740645-50740664 Msa0645460:intron 20.0%
!! CAAAATAAGTTCAATTCAAA+CGG + chr4_3:50740988-50741007 Msa0645460:intron 20.0%
!! AAAATAAGTTCAATTCAAAC+GGG + chr4_3:50740989-50741008 Msa0645460:intron 20.0%
!! TGTTAGATTATAATTATTCG+TGG + chr4_3:50741131-50741150 Msa0645460:intron 20.0%
!!! TTCTTTTGGTTTATGAACAA+AGG - chr4_3:50738207-50738226 None:intergenic 25.0%
! TCATAAACCAAAAGAAACAA+AGG + chr4_3:50738211-50738230 Msa0645460:CDS 25.0%
!! AATTGATTTACCCAACAAAT+CGG - chr4_3:50738403-50738422 None:intergenic 25.0%
!!! TTAACTTTGGAATTTAGGTT+GGG + chr4_3:50738468-50738487 Msa0645460:intron 25.0%
!!! CATTTTAAGCTGTTTTTAAC+TGG - chr4_3:50738964-50738983 None:intergenic 25.0%
! CTATATATTCAGTGAATGTT+TGG - chr4_3:50739096-50739115 None:intergenic 25.0%
! ACATTCACTGAATATATAGT+TGG + chr4_3:50739097-50739116 Msa0645460:intron 25.0%
! AAATAAGCACAGTAGAAAAA+CGG - chr4_3:50739205-50739224 None:intergenic 25.0%
! AGTGTTATATAGTGTTCTTA+TGG + chr4_3:50739331-50739350 Msa0645460:intron 25.0%
! TGGTTAAATCTCACTAAAAT+AGG - chr4_3:50739370-50739389 None:intergenic 25.0%
!! AAATATGATACATAGCTTTG+TGG + chr4_3:50739427-50739446 Msa0645460:intron 25.0%
! TAATCAGCAATCTACATAAA+TGG + chr4_3:50739858-50739877 Msa0645460:intron 25.0%
! TAGGTAGTAGTAATATAAAG+AGG - chr4_3:50740033-50740052 None:intergenic 25.0%
! TTACTACTACCTAAAAAAAG+AGG + chr4_3:50740040-50740059 Msa0645460:intron 25.0%
! ATTATCTATACTATATGGGA+AGG - chr4_3:50740367-50740386 None:intergenic 25.0%
!! AACATTATCAACATTGGTTA+CGG + chr4_3:50740529-50740548 Msa0645460:intron 25.0%
!! TCATTTTACGTTCTAATAAG+AGG - chr4_3:50740574-50740593 None:intergenic 25.0%
!! ATAACTATCAACATTGGTTA+CGG + chr4_3:50740651-50740670 Msa0645460:intron 25.0%
!! TCATTTTACGTTCTAATAAG+AGG - chr4_3:50740574-50740593 None:intergenic 25.0%
! AAATAAGTTCAATTCAAACG+GGG + chr4_3:50740990-50741009 Msa0645460:intron 25.0%
!!! ACGTCAATTTTAGCATATAT+TGG - chr4_3:50741284-50741303 None:intergenic 25.0%
! GGGAAAAATACAAGTAATTA+AGG - chr4_3:50741367-50741386 None:intergenic 25.0%
!!! TTGTATTTTTCCCTTGTTTT+TGG + chr4_3:50741374-50741393 Msa0645460:intron 25.0%
!! TCTTTTTGAACCAAAAACAA+GGG - chr4_3:50741387-50741406 None:intergenic 25.0%
! ATAAAGCAAATTGTTCTTGA+TGG + chr4_3:50741561-50741580 Msa0645460:CDS 25.0%
!! TCAATTTTTCTTGTGAATCA+TGG + chr4_3:50741601-50741620 Msa0645460:CDS 25.0%
!! CAATTTTTCTTGTGAATCAT+GGG + chr4_3:50741602-50741621 Msa0645460:CDS 25.0%
TTGTTCAAGATGAGACAATT+TGG - chr4_3:50738126-50738145 None:intergenic 30.0%
! AACCAAACATGTTTTCATGT+TGG + chr4_3:50738171-50738190 Msa0645460:CDS 30.0%
ATCCAACATGAAAACATGTT+TGG - chr4_3:50738176-50738195 None:intergenic 30.0%
TAAACCAAAAGAAACAAAGG+AGG + chr4_3:50738214-50738233 Msa0645460:CDS 30.0%
!! CACTCTTAACTTTGGAATTT+AGG + chr4_3:50738463-50738482 Msa0645460:intron 30.0%
!! CTTAACTTTGGAATTTAGGT+TGG + chr4_3:50738467-50738486 Msa0645460:intron 30.0%
ATATAGTGTTCTTATGGTAG+TGG + chr4_3:50739337-50739356 Msa0645460:intron 30.0%
!! AAATGTGACACATAGTTTTG+TGG + chr4_3:50739565-50739584 Msa0645460:intron 30.0%
CGTTAGCGCAATAAAAAAAA+CGG - chr4_3:50740087-50740106 None:intergenic 30.0%
AATAAGAGGAATTGCTCATT+TGG - chr4_3:50740560-50740579 None:intergenic 30.0%
AATAAGAGGAATTGCTCATT+TGG - chr4_3:50740560-50740579 None:intergenic 30.0%
TTTCTTACTTCTACCAGATA+AGG - chr4_3:50741233-50741252 None:intergenic 30.0%
! CTCTTTTTGAACCAAAAACA+AGG - chr4_3:50741388-50741407 None:intergenic 30.0%
GGTTCAAAAAGAGACAAAAT+TGG + chr4_3:50741395-50741414 Msa0645460:intron 30.0%
AAAAGAGACAAAATTGGAGA+AGG + chr4_3:50741401-50741420 Msa0645460:intron 30.0%
GATTCACAAGAAAAATTGAC+AGG - chr4_3:50741600-50741619 None:intergenic 30.0%
TTTGGTTACTTCCAATACCA+TGG - chr4_3:50738158-50738177 None:intergenic 35.0%
!! ACAACCTCCTTTGTTTCTTT+TGG - chr4_3:50738221-50738240 None:intergenic 35.0%
AGAAACAAAGGAGGTTGTTT+AGG + chr4_3:50738223-50738242 Msa0645460:intron 35.0%
TCAGAAATGGCTATAGAAAG+AGG + chr4_3:50738363-50738382 Msa0645460:CDS 35.0%
CAGAAATGGCTATAGAAAGA+GGG + chr4_3:50738364-50738383 Msa0645460:CDS 35.0%
!! TGATGACATAACCGATTTGT+TGG + chr4_3:50738389-50738408 Msa0645460:CDS 35.0%
!! GATGACATAACCGATTTGTT+GGG + chr4_3:50738390-50738409 Msa0645460:CDS 35.0%
GTTGGGTAAATCAATTCTCT+TGG + chr4_3:50738407-50738426 Msa0645460:CDS 35.0%
AAAGTTAAGAGTGACTTACC+GGG - chr4_3:50738456-50738475 None:intergenic 35.0%
CAAAGTTAAGAGTGACTTAC+CGG - chr4_3:50738457-50738476 None:intergenic 35.0%
!!! AAGGCAATGCCGATTTTTTA+CGG + chr4_3:50738609-50738628 Msa0645460:intron 35.0%
AAAAATGCCACTACAAACGT+GGG + chr4_3:50738840-50738859 Msa0645460:intron 35.0%
TCAGTGAATGTTTGGATTGA+AGG - chr4_3:50739088-50739107 None:intergenic 35.0%
!!! GTGAGTACTCCTCTTTTTTT+AGG - chr4_3:50740052-50740071 None:intergenic 35.0%
TACTATATGGGAAGGAGATA+GGG - chr4_3:50740359-50740378 None:intergenic 35.0%
ATACTATATGGGAAGGAGAT+AGG - chr4_3:50740360-50740379 None:intergenic 35.0%
!!! TACATCGAGTGTCATTTTGT+TGG - chr4_3:50741016-50741035 None:intergenic 35.0%
TAAGTACAAGATGTGACAAG+AGG - chr4_3:50741157-50741176 None:intergenic 35.0%
TTAACCTCATATGCCTTATC+TGG + chr4_3:50741217-50741236 Msa0645460:intron 35.0%
!!! TAGCAGAACGTTGTTTTTCT+AGG + chr4_3:50741255-50741274 Msa0645460:intron 35.0%
!!! AGCAGAACGTTGTTTTTCTA+GGG + chr4_3:50741256-50741275 Msa0645460:intron 35.0%
!! TTTGAAGTACCAGGAAGTTT+TGG + chr4_3:50741489-50741508 Msa0645460:CDS 35.0%
TTGTGGAAAATGAGCATAGA+AGG + chr4_3:50741529-50741548 Msa0645460:CDS 35.0%
TGTGGAAAATGAGCATAGAA+GGG + chr4_3:50741530-50741549 Msa0645460:CDS 35.0%
AAATGACCCTCTTATCATCA+GGG - chr4_3:50741647-50741666 None:intergenic 35.0%
AAAATGACCCTCTTATCATC+AGG - chr4_3:50741648-50741667 None:intergenic 35.0%
! GTTTTCATGTTGGATCGTCA+AGG + chr4_3:50738181-50738200 Msa0645460:CDS 40.0%
AACAAAGGAGGTTGTTTAGG+AGG + chr4_3:50738226-50738245 Msa0645460:intron 40.0%
! TGTTGGTTGAACAGTAACTG+TGG - chr4_3:50738328-50738347 None:intergenic 40.0%
GTTACTGTTCAACCAACAGT+TGG + chr4_3:50738330-50738349 Msa0645460:CDS 40.0%
! TGGAGGACTTTTCTCAGAAA+TGG + chr4_3:50738350-50738369 Msa0645460:CDS 40.0%
CGGTAAGTCACTCTTAACTT+TGG + chr4_3:50738455-50738474 Msa0645460:intron 40.0%
CAAAAATGCCACTACAAACG+TGG + chr4_3:50738839-50738858 Msa0645460:intron 40.0%
!!! TGTGACACATAGTTTTGTGG+TGG + chr4_3:50739568-50739587 Msa0645460:intron 40.0%
ATAGAAAGAGCAAGAGCAAG+AGG + chr4_3:50739989-50740008 Msa0645460:intron 40.0%
TCTACCAGATAAGGCATATG+AGG - chr4_3:50741224-50741243 None:intergenic 40.0%
!!! GCAGAACGTTGTTTTTCTAG+GGG + chr4_3:50741257-50741276 Msa0645460:intron 40.0%
GAGACAAAATTGGAGAAGGA+AGG + chr4_3:50741405-50741424 Msa0645460:intron 40.0%
TTGGAGAAGGAAGGAATCAA+AGG + chr4_3:50741414-50741433 Msa0645460:CDS 40.0%
! GAAGCTGAATTTGAAGTACC+AGG + chr4_3:50741480-50741499 Msa0645460:CDS 40.0%
CCAATATCTCCAAAACTTCC+TGG - chr4_3:50741501-50741520 None:intergenic 40.0%
!!! CCAGGAAGTTTTGGAGATAT+TGG + chr4_3:50741498-50741517 Msa0645460:CDS 40.0%
AGATATTGGTGCAGTTCTTG+TGG + chr4_3:50741512-50741531 Msa0645460:CDS 40.0%
ATGACAACCCTGATGATAAG+AGG + chr4_3:50741637-50741656 Msa0645460:CDS 40.0%
TGACAACCCTGATGATAAGA+GGG + chr4_3:50741638-50741657 Msa0645460:CDS 40.0%
TTGAACAAGCCATGTCTCCA+TGG + chr4_3:50738138-50738157 Msa0645460:CDS 45.0%
AAGCCATGTCTCCATGGTAT+TGG + chr4_3:50738144-50738163 Msa0645460:CDS 45.0%
CTTCCAATACCATGGAGACA+TGG - chr4_3:50738150-50738169 None:intergenic 45.0%
ACTGTTCAACCAACAGTTGG+AGG + chr4_3:50738333-50738352 Msa0645460:CDS 45.0%
GAGAAAAGTCCTCCAACTGT+TGG - chr4_3:50738345-50738364 None:intergenic 45.0%
GGGTGCAATAAGATAGTCTG+TGG + chr4_3:50738488-50738507 Msa0645460:intron 45.0%
! CGGCATTGCCTTATTGCTTT+AGG - chr4_3:50738601-50738620 None:intergenic 45.0%
AGCTTCGTTTCAACACTCGT+TGG - chr4_3:50738781-50738800 None:intergenic 45.0%
CTCTATACCCACGTTTGTAG+TGG - chr4_3:50738850-50738869 None:intergenic 45.0%
CACTACAAACGTGGGTATAG+AGG + chr4_3:50738848-50738867 Msa0645460:intron 45.0%
! GGGAAGGAGATAGGGATTTT+AGG - chr4_3:50740351-50740370 None:intergenic 45.0%
! GTTCTTGATGGCTTTCTCAC+TGG + chr4_3:50741573-50741592 Msa0645460:CDS 45.0%
ATCATCAGGGTTGTCATGCT+TGG - chr4_3:50741634-50741653 None:intergenic 45.0%
!! GTATAAAATAATTTAAATAA+AGG - chr4_3:50739479-50739498 None:intergenic 5.0%
!! TAAAAAAATAGTTTAAATAA+AGG - chr4_3:50739614-50739633 None:intergenic 5.0%
!! TTGTTTAATATTTAAATAAA+TGG + chr4_3:50740484-50740503 Msa0645460:intron 5.0%
!! TTAATTAATTATTTAATTGT+TGG - chr4_3:50740603-50740622 None:intergenic 5.0%
TGACTTACCGGGATCTAGCT+CGG - chr4_3:50738445-50738464 None:intergenic 50.0%
CGGATAAACGAGCACAAGAG+TGG - chr4_3:50739185-50739204 None:intergenic 50.0%
CTTCCACTGATCTATGCGTC+TGG - chr4_3:50741449-50741468 None:intergenic 50.0%
GTTAGCTCCGAGCTAGATCC+CGG + chr4_3:50738435-50738454 Msa0645460:CDS 55.0%
CCACTGATCTATGCGTCTGG+TGG - chr4_3:50741446-50741465 None:intergenic 55.0%
CCACCAGACGCATAGATCAG+TGG + chr4_3:50741443-50741462 Msa0645460:CDS 55.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 50738084 50741677 50738084 ID=Msa0645460;Name=Msa0645460
chr4_3 mRNA 50738084 50741677 50738084 ID=Msa0645460-mRNA-1;Parent=Msa0645460;Name=Msa0645460-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|0.5|0.33|1|0.5|0.33|3|0|212
chr4_3 exon 50738084 50738235 50738084 ID=Msa0645460-mRNA-1:exon:12085;Parent=Msa0645460-mRNA-1
chr4_3 exon 50738245 50738456 50738245 ID=Msa0645460-mRNA-1:exon:12086;Parent=Msa0645460-mRNA-1
chr4_3 exon 50741406 50741677 50741406 ID=Msa0645460-mRNA-1:exon:12087;Parent=Msa0645460-mRNA-1
chr4_3 CDS 50738084 50738235 50738084 ID=Msa0645460-mRNA-1:cds;Parent=Msa0645460-mRNA-1
chr4_3 CDS 50738245 50738456 50738245 ID=Msa0645460-mRNA-1:cds;Parent=Msa0645460-mRNA-1
chr4_3 CDS 50741406 50741677 50741406 ID=Msa0645460-mRNA-1:cds;Parent=Msa0645460-mRNA-1
Gene Sequence

>Msa0645460

AGCAAGAAATATGCTTATGCAACAAAAATAAGTTTAAAGCCAAATTGTCTCATCTTGAACAAGCCATGTCTCCATGGTATTGGAAGTAACCAAACATGTTTTCATGTTGGATCGTCAAGGCCTTTGTTCATAAACCAAAAGAAACAAAGGAGGAGGAATGAGTGCAGCAAAATCAAAGCTGTAGCTGTGAGTGATGAAGAACTTATAGAACAGCAATCAGTAAAAGTAACAGCCACAGTTACTGTTCAACCAACAGTTGGAGGACTTTTCTCAGAAATGGCTATAGAAAGAGGGCTTGATGACATAACCGATTTGTTGGGTAAATCAATTCTCTTGGAGTTTGTTAGCTCCGAGCTAGATCCCGAGACAAAATTGGAGAAGGAAGGAATCAAAGGTTACGTCCACCAGACGCATAGATCAGTGGAAGAGATTAAATATGAAGCTGAATTTGAAGTACCAGGAAGTTTTGGAGATATTGGTGCAGTTCTTGTGGAAAATGAGCATAGAAGGGAAATGTTTATAAAGCAAATTGTTCTTGATGGCTTTCTCACTGGTCCTGTCAATTTTTCTTGTGAATCATGGGTTCATTCCAAGCATGACAACCCTGATGATAAGAGGGTCATTTTTTCCAATAAG

Protein sequence

>Msa0645460

SKKYAYATKISLKPNCLILNKPCLHGIGSNQTCFHVGSSRPLFINQKKQRRRNECSKIKAVAVSDEELIEQQSVKVTATVTVQPTVGGLFSEMAIERGLDDITDLLGKSILLEFVSSELDPETKLEKEGIKGYVHQTHRSVEEIKYEAEFEVPGSFGDIGAVLVENEHRREMFIKQIVLDGFLTGPVNFSCESWVHSKHDNPDDKRVIFSNK