Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0645460 | RHN61117.1 | 93.237 | 207 | 11 | 1 | 9 | 212 | 5 | 211 | 5.20e-138 | 396 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0645460 | sp|O24370|LOX21_SOLTU | 47.619 | 168 | 77 | 3 | 45 | 212 | 46 | 202 | 1.75e-41 | 152 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0014790 | Msa0645460 | 0.837030 | 6.610494e-57 | -8.615850e-47 |
Msa0021980 | Msa0645460 | 0.807956 | 3.923554e-50 | -8.615850e-47 |
Msa0026120 | Msa0645460 | 0.821285 | 4.379233e-53 | -8.615850e-47 |
Msa0036150 | Msa0645460 | 0.809600 | 1.746525e-50 | -8.615850e-47 |
Msa0053480 | Msa0645460 | 0.826943 | 2.055786e-54 | -8.615850e-47 |
Msa0055650 | Msa0645460 | 0.806021 | 1.007066e-49 | -8.615850e-47 |
Msa0067580 | Msa0645460 | 0.809555 | 1.785974e-50 | -8.615850e-47 |
Msa0070090 | Msa0645460 | 0.842185 | 3.016796e-58 | -8.615850e-47 |
Msa0077920 | Msa0645460 | 0.825457 | 4.639310e-54 | -8.615850e-47 |
Msa0089150 | Msa0645460 | -0.810967 | 8.857710e-51 | -8.615850e-47 |
Msa0093440 | Msa0645460 | 0.817236 | 3.661111e-52 | -8.615850e-47 |
Msa0112800 | Msa0645460 | 0.806258 | 8.974720e-50 | -8.615850e-47 |
Msa0604130 | Msa0645460 | 0.898214 | 6.606129e-77 | -8.615850e-47 |
Msa0607620 | Msa0645460 | 0.822745 | 2.009658e-53 | -8.615850e-47 |
Msa0617560 | Msa0645460 | -0.804667 | 1.935405e-49 | -8.615850e-47 |
Msa0636750 | Msa0645460 | 0.920446 | 1.266431e-87 | -8.615850e-47 |
Msa0636760 | Msa0645460 | 0.930278 | 2.066795e-93 | -8.615850e-47 |
Msa0641020 | Msa0645460 | 0.871929 | 4.697864e-67 | -8.615850e-47 |
Msa0641030 | Msa0645460 | 0.858017 | 1.099332e-62 | -8.615850e-47 |
Msa0645460 | Msa0648200 | 0.802815 | 4.690988e-49 | -8.615850e-47 |
Msa0645460 | Msa0648300 | 0.823699 | 1.203584e-53 | -8.615850e-47 |
Msa0645460 | Msa0664110 | 0.810353 | 1.202667e-50 | -8.615850e-47 |
Msa0645460 | Msa0664130 | 0.823965 | 1.042582e-53 | -8.615850e-47 |
Msa0645460 | Msa0678240 | 0.816114 | 6.533867e-52 | -8.615850e-47 |
Msa0645460 | Msa0679560 | 0.845523 | 3.851242e-59 | -8.615850e-47 |
Msa0645460 | Msa0684910 | 0.916231 | 2.284332e-85 | -8.615850e-47 |
Msa0645460 | Msa0684920 | 0.930528 | 1.436236e-93 | -8.615850e-47 |
Msa0645460 | Msa0685880 | 0.809779 | 1.598099e-50 | -8.615850e-47 |
Msa0645460 | Msa0691140 | 0.835862 | 1.310628e-56 | -8.615850e-47 |
Msa0645460 | Msa0729920 | 0.806146 | 9.478266e-50 | -8.615850e-47 |
Msa0645460 | Msa0739410 | 0.805313 | 1.417727e-49 | -8.615850e-47 |
Msa0645460 | Msa0752580 | 0.815121 | 1.087222e-51 | -8.615850e-47 |
Msa0645460 | Msa0754500 | 0.808866 | 2.509434e-50 | -8.615850e-47 |
Msa0645460 | Msa0756940 | 0.808810 | 2.579489e-50 | -8.615850e-47 |
Msa0645460 | Msa0782090 | 0.806041 | 9.970299e-50 | -8.615850e-47 |
Msa0645460 | Msa0819740 | 0.821867 | 3.213975e-53 | -8.615850e-47 |
Msa0645460 | Msa0833080 | 0.800092 | 1.694574e-48 | -8.615850e-47 |
Msa0645460 | Msa0836510 | 0.813682 | 2.261533e-51 | -8.615850e-47 |
Msa0645460 | Msa0843280 | 0.807349 | 5.279937e-50 | -8.615850e-47 |
Msa0645460 | Msa0883390 | 0.841456 | 4.699176e-58 | -8.615850e-47 |
Msa0645460 | Msa0883410 | 0.822984 | 1.767997e-53 | -8.615850e-47 |
Msa0645460 | Msa0883430 | 0.800467 | 1.421570e-48 | -8.615850e-47 |
Msa0645460 | Msa0883660 | 0.821497 | 3.913575e-53 | -8.615850e-47 |
Msa0645460 | Msa0883670 | 0.805268 | 1.448946e-49 | -8.615850e-47 |
Msa0645460 | Msa0885320 | 0.846085 | 2.709926e-59 | -8.615850e-47 |
Msa0645460 | Msa0886660 | 0.847062 | 1.466869e-59 | -8.615850e-47 |
Msa0645460 | Msa0887000 | 0.833519 | 5.089357e-56 | -8.615850e-47 |
Msa0645460 | Msa0912160 | 0.845468 | 3.984825e-59 | -8.615850e-47 |
Msa0645460 | Msa0912200 | 0.820738 | 5.851996e-53 | -8.615850e-47 |
Msa0645460 | Msa0912230 | 0.802949 | 4.399663e-49 | -8.615850e-47 |
Msa0645460 | Msa0912470 | 0.848122 | 7.496046e-60 | -8.615850e-47 |
Msa0645460 | Msa0919490 | 0.812812 | 3.512240e-51 | -8.615850e-47 |
Msa0645460 | Msa0946120 | 0.809722 | 1.643835e-50 | -8.615850e-47 |
Msa0645460 | Msa0951720 | 0.820900 | 5.372442e-53 | -8.615850e-47 |
Msa0645460 | Msa0957800 | 0.847136 | 1.399244e-59 | -8.615850e-47 |
Msa0645460 | Msa0984830 | 0.835572 | 1.552051e-56 | -8.615850e-47 |
Msa0645460 | Msa0984850 | 0.801396 | 9.183775e-49 | -8.615850e-47 |
Msa0645460 | Msa0986870 | 0.822607 | 2.163498e-53 | -8.615850e-47 |
Msa0645460 | Msa0987860 | 0.816813 | 4.556289e-52 | -8.615850e-47 |
Msa0645460 | Msa1001210 | 0.816063 | 6.708242e-52 | -8.615850e-47 |
Msa0645460 | Msa1006290 | 0.801093 | 1.059444e-48 | -8.615850e-47 |
Msa0645460 | Msa1006460 | 0.825173 | 5.415324e-54 | -8.615850e-47 |
Msa0645460 | Msa1006680 | 0.811334 | 7.373225e-51 | -8.615850e-47 |
Msa0645460 | Msa1008340 | 0.847448 | 1.149218e-59 | -8.615850e-47 |
Msa0645460 | Msa1008960 | 0.815726 | 7.974335e-52 | -8.615850e-47 |
Msa0645460 | Msa1009020 | 0.865292 | 6.563845e-65 | -8.615850e-47 |
Msa0645460 | Msa1009170 | 0.801359 | 9.346479e-49 | -8.615850e-47 |
Msa0645460 | Msa1018720 | 0.865284 | 6.604059e-65 | -8.615850e-47 |
Msa0645460 | Msa1025770 | 0.831956 | 1.243915e-55 | -8.615850e-47 |
Msa0645460 | Msa1032350 | 0.804002 | 2.662178e-49 | -8.615850e-47 |
Msa0645460 | Msa1033670 | 0.833833 | 4.248363e-56 | -8.615850e-47 |
Msa0645460 | Msa1036350 | 0.817071 | 3.987816e-52 | -8.615850e-47 |
Msa0645460 | Msa1036360 | 0.858918 | 5.921091e-63 | -8.615850e-47 |
Msa0645460 | Msa1044450 | 0.806457 | 8.150135e-50 | -8.615850e-47 |
Msa0645460 | Msa1049950 | 0.825008 | 5.923113e-54 | -8.615850e-47 |
Msa0645460 | Msa1050320 | 0.825869 | 3.704196e-54 | -8.615850e-47 |
Msa0645460 | Msa1052070 | 0.803601 | 3.224231e-49 | -8.615850e-47 |
Msa0645460 | Msa1052080 | 0.806579 | 7.682055e-50 | -8.615850e-47 |
Msa0645460 | Msa1055710 | 0.800181 | 1.625983e-48 | -8.615850e-47 |
Msa0645460 | Msa1076630 | 0.840260 | 9.676811e-58 | -8.615850e-47 |
Msa0645460 | Msa1076640 | 0.857595 | 1.466345e-62 | -8.615850e-47 |
Msa0645460 | Msa1098990 | 0.822695 | 2.064001e-53 | -8.615850e-47 |
Msa0645460 | Msa1101620 | 0.803416 | 3.523445e-49 | -8.615850e-47 |
Msa0645460 | Msa1103610 | 0.823347 | 1.454989e-53 | -8.615850e-47 |
Msa0645460 | Msa1108780 | 0.823762 | 1.163469e-53 | -8.615850e-47 |
Msa0645460 | Msa1113210 | 0.820606 | 6.275259e-53 | -8.615850e-47 |
Msa0645460 | Msa1129010 | -0.808795 | 2.598887e-50 | -8.615850e-47 |
Msa0645460 | Msa1135660 | 0.803142 | 4.015012e-49 | -8.615850e-47 |
Msa0645460 | Msa1139240 | 0.856957 | 2.264109e-62 | -8.615850e-47 |
Msa0645460 | Msa1140460 | 0.810612 | 1.057299e-50 | -8.615850e-47 |
Msa0645460 | Msa1147190 | 0.848430 | 6.158483e-60 | -8.615850e-47 |
Msa0645460 | Msa1166270 | 0.801153 | 1.029694e-48 | -8.615850e-47 |
Msa0645460 | Msa1173670 | 0.803009 | 4.277658e-49 | -8.615850e-47 |
Msa0645460 | Msa1179130 | 0.800695 | 1.277355e-48 | -8.615850e-47 |
Msa0645460 | Msa1182780 | 0.820493 | 6.664243e-53 | -8.615850e-47 |
Msa0645460 | Msa1199750 | 0.816020 | 6.858658e-52 | -8.615850e-47 |
Msa0645460 | Msa1208250 | 0.820435 | 6.870787e-53 | -8.615850e-47 |
Msa0645460 | Msa1211280 | 0.839212 | 1.813723e-57 | -8.615850e-47 |
Msa0645460 | Msa1211370 | 0.822539 | 2.244139e-53 | -8.615850e-47 |
Msa0645460 | Msa1238130 | 0.840330 | 9.279774e-58 | -8.615850e-47 |
Msa0645460 | Msa1244300 | 0.815677 | 8.177845e-52 | -8.615850e-47 |
Msa0645460 | Msa1247720 | 0.801764 | 7.720658e-49 | -8.615850e-47 |
Msa0645460 | Msa1279850 | 0.816407 | 5.618842e-52 | -8.615850e-47 |
Msa0645460 | Msa1279860 | 0.826981 | 2.012792e-54 | -8.615850e-47 |
Msa0645460 | Msa1279870 | 0.828290 | 9.761806e-55 | -8.615850e-47 |
Msa0645460 | Msa1285830 | 0.816710 | 4.806220e-52 | -8.615850e-47 |
Msa0645460 | Msa1287160 | 0.826549 | 2.552653e-54 | -8.615850e-47 |
Msa0645460 | Msa1287340 | 0.817800 | 2.732814e-52 | -8.615850e-47 |
Msa0645460 | Msa1294470 | 0.836669 | 8.173612e-57 | -8.615850e-47 |
Msa0645460 | Msa1304850 | 0.809308 | 2.018041e-50 | -8.615850e-47 |
Msa0645460 | Msa1317140 | 0.802544 | 5.334175e-49 | -8.615850e-47 |
Msa0645460 | Msa1328600 | 0.827742 | 1.322465e-54 | -8.615850e-47 |
Msa0645460 | Msa1329820 | 0.814843 | 1.253228e-51 | -8.615850e-47 |
Msa0645460 | Msa1352550 | 0.814034 | 1.892245e-51 | -8.615850e-47 |
Msa0645460 | Msa1357380 | 0.825326 | 4.981798e-54 | -8.615850e-47 |
Msa0645460 | Msa1391600 | 0.811386 | 7.184893e-51 | -8.615850e-47 |
Msa0645460 | Msa1413880 | 0.838317 | 3.089338e-57 | -8.615850e-47 |
Msa0645460 | Msa1443440 | 0.812197 | 4.784852e-51 | -8.615850e-47 |
Msa0645460 | Msa1445250 | 0.877094 | 8.279053e-69 | -8.615850e-47 |
Msa0645460 | Msa1445700 | 0.801755 | 7.751833e-49 | -8.615850e-47 |
Msa0645460 | Msa1456410 | 0.816486 | 5.395255e-52 | -8.615850e-47 |
Msa0645460 | Msa1457020 | 0.800853 | 1.186038e-48 | -8.615850e-47 |
Msa0645460 | Msa1457070 | 0.834330 | 3.190755e-56 | -8.615850e-47 |
Msa0645460 | Msa1459170 | 0.810261 | 1.258914e-50 | -8.615850e-47 |
Msa0125810 | Msa0645460 | 0.828013 | 1.138395e-54 | -8.615850e-47 |
Msa0130100 | Msa0645460 | 0.807522 | 4.850200e-50 | -8.615850e-47 |
Msa0151810 | Msa0645460 | 0.814790 | 1.287473e-51 | -8.615850e-47 |
Msa0153440 | Msa0645460 | 0.804730 | 1.877204e-49 | -8.615850e-47 |
Msa0166580 | Msa0645460 | 0.811902 | 5.550583e-51 | -8.615850e-47 |
Msa0170450 | Msa0645460 | 0.825275 | 5.123003e-54 | -8.615850e-47 |
Msa0179860 | Msa0645460 | 0.809402 | 1.925855e-50 | -8.615850e-47 |
Msa0201330 | Msa0645460 | 0.804288 | 2.321745e-49 | -8.615850e-47 |
Msa0201370 | Msa0645460 | 0.809786 | 1.592798e-50 | -8.615850e-47 |
Msa0201390 | Msa0645460 | 0.801446 | 8.967952e-49 | -8.615850e-47 |
Msa0211670 | Msa0645460 | 0.809521 | 1.815962e-50 | -8.615850e-47 |
Msa0225370 | Msa0645460 | 0.811460 | 6.924926e-51 | -8.615850e-47 |
Msa0227800 | Msa0645460 | 0.817112 | 3.903860e-52 | -8.615850e-47 |
Msa0232860 | Msa0645460 | 0.805440 | 1.333598e-49 | -8.615850e-47 |
Msa0365360 | Msa0645460 | 0.844641 | 6.665894e-59 | -8.615850e-47 |
Msa0389050 | Msa0645460 | 0.820572 | 6.390803e-53 | -8.615850e-47 |
Msa0405250 | Msa0645460 | -0.801752 | 7.762388e-49 | -8.615850e-47 |
Msa0411000 | Msa0645460 | 0.800951 | 1.132778e-48 | -8.615850e-47 |
Msa0416800 | Msa0645460 | 0.806203 | 9.221124e-50 | -8.615850e-47 |
Msa0452010 | Msa0645460 | 0.824527 | 7.693338e-54 | -8.615850e-47 |
Msa0452680 | Msa0645460 | 0.822925 | 1.824400e-53 | -8.615850e-47 |
Msa0457370 | Msa0645460 | 0.830267 | 3.232660e-55 | -8.615850e-47 |
Msa0481320 | Msa0645460 | 0.854181 | 1.460057e-61 | -8.615850e-47 |
Msa0241580 | Msa0645460 | 0.823437 | 1.385713e-53 | -8.615850e-47 |
Msa0243910 | Msa0645460 | 0.816749 | 4.710056e-52 | -8.615850e-47 |
Msa0243930 | Msa0645460 | 0.806371 | 8.498560e-50 | -8.615850e-47 |
Msa0243940 | Msa0645460 | 0.804605 | 1.993439e-49 | -8.615850e-47 |
Msa0251140 | Msa0645460 | 0.815212 | 1.037864e-51 | -8.615850e-47 |
Msa0256660 | Msa0645460 | 0.807313 | 5.372519e-50 | -8.615850e-47 |
Msa0279490 | Msa0645460 | 0.824243 | 8.972175e-54 | -8.615850e-47 |
Msa0282590 | Msa0645460 | 0.811463 | 6.912561e-51 | -8.615850e-47 |
Msa0304740 | Msa0645460 | 0.806320 | 8.710760e-50 | -8.615850e-47 |
Msa0304990 | Msa0645460 | 0.835147 | 1.987772e-56 | -8.615850e-47 |
Msa0328840 | Msa0645460 | 0.852342 | 4.916448e-61 | -8.615850e-47 |
Msa0331590 | Msa0645460 | 0.819354 | 1.213475e-52 | -8.615850e-47 |
Msa0334650 | Msa0645460 | 0.800545 | 1.370469e-48 | -8.615850e-47 |
Msa0343200 | Msa0645460 | 0.824856 | 6.433664e-54 | -8.615850e-47 |
Msa0360940 | Msa0645460 | 0.807056 | 6.090668e-50 | -8.615850e-47 |
Msa0509020 | Msa0645460 | 0.809851 | 1.542688e-50 | -8.615850e-47 |
Msa0535050 | Msa0645460 | 0.802411 | 5.683019e-49 | -8.615850e-47 |
Msa0544930 | Msa0645460 | 0.840380 | 9.006745e-58 | -8.615850e-47 |
Msa0548720 | Msa0645460 | 0.806115 | 9.620448e-50 | -8.615850e-47 |
Msa0563140 | Msa0645460 | 0.833224 | 6.028961e-56 | -8.615850e-47 |
Msa0575540 | Msa0645460 | 0.837119 | 6.274380e-57 | -8.615850e-47 |
Msa0591780 | Msa0645460 | 0.802817 | 4.685634e-49 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0645460 | MtrunA17_Chr4g0033181 | 93.237 | 207 | 11 | 1 | 9 | 212 | 5 | 211 | 4.78e-142 | 396 |
Msa0645460 | MtrunA17_Chr3g0118651 | 49.306 | 144 | 63 | 3 | 70 | 212 | 72 | 206 | 8.94e-38 | 139 |
Msa0645460 | MtrunA17_Chr3g0118641 | 44.785 | 163 | 80 | 3 | 51 | 212 | 52 | 205 | 2.64e-36 | 134 |
Msa0645460 | MtrunA17_Chr3g0118621 | 45.070 | 142 | 76 | 2 | 71 | 212 | 28 | 167 | 1.50e-30 | 118 |
Msa0645460 | MtrunA17_Chr8g0344201 | 38.732 | 142 | 81 | 3 | 75 | 212 | 90 | 229 | 6.22e-26 | 104 |
Msa0645460 | MtrunA17_Chr8g0377101 | 31.469 | 143 | 93 | 3 | 73 | 212 | 77 | 217 | 6.90e-18 | 81.6 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0645460 | AT1G17420.1 | 39.216 | 153 | 87 | 3 | 64 | 212 | 74 | 224 | 2.14e-28 | 112 |
Msa0645460 | AT1G72520.1 | 37.324 | 142 | 83 | 3 | 75 | 212 | 91 | 230 | 5.16e-26 | 105 |
Msa0645460 | AT3G45140.1 | 32.121 | 165 | 100 | 5 | 50 | 212 | 47 | 201 | 4.56e-22 | 94.0 |
Msa0645460 | AT1G67560.1 | 31.469 | 143 | 92 | 4 | 73 | 212 | 79 | 218 | 3.07e-14 | 71.2 |
Find 41 sgRNAs with CRISPR-Local
Find 152 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ACAACCTCCTTTGTTTCTTT+TGG | 0.222665 | 4_3:-50738218 | None:intergenic |
ATAAAGCAAATTGTTCTTGA+TGG | 0.271031 | 4_3:+50741561 | Msa0645460:CDS |
TTTGAAGTACCAGGAAGTTT+TGG | 0.287906 | 4_3:+50741489 | Msa0645460:CDS |
GGATAATGATGAAACCTTAT+TGG | 0.288513 | 4_3:-50741670 | None:intergenic |
TTGTTCAAGATGAGACAATT+TGG | 0.358818 | 4_3:-50738123 | None:intergenic |
ATCCAACATGAAAACATGTT+TGG | 0.381038 | 4_3:-50738173 | None:intergenic |
TTGTGGAAAATGAGCATAGA+AGG | 0.384517 | 4_3:+50741529 | Msa0645460:CDS |
CCAATATCTCCAAAACTTCC+TGG | 0.404847 | 4_3:-50741498 | None:intergenic |
GTTCTTGATGGCTTTCTCAC+TGG | 0.412239 | 4_3:+50741573 | Msa0645460:CDS |
ATCATCAGGGTTGTCATGCT+TGG | 0.413714 | 4_3:-50741631 | None:intergenic |
TGATGACATAACCGATTTGT+TGG | 0.420284 | 4_3:+50738389 | Msa0645460:CDS |
GTTGGGTAAATCAATTCTCT+TGG | 0.421329 | 4_3:+50738407 | Msa0645460:CDS |
AAAATGACCCTCTTATCATC+AGG | 0.437774 | 4_3:-50741645 | None:intergenic |
AAGCCATGTCTCCATGGTAT+TGG | 0.449477 | 4_3:+50738144 | Msa0645460:CDS |
GATGACATAACCGATTTGTT+GGG | 0.451366 | 4_3:+50738390 | Msa0645460:CDS |
AATTGATTTACCCAACAAAT+CGG | 0.464268 | 4_3:-50738400 | None:intergenic |
CTTCCACTGATCTATGCGTC+TGG | 0.491600 | 4_3:-50741446 | None:intergenic |
GTTAGCTCCGAGCTAGATCC+CGG | 0.491907 | 4_3:+50738435 | Msa0645460:CDS |
ATGACAACCCTGATGATAAG+AGG | 0.495085 | 4_3:+50741637 | Msa0645460:CDS |
GAGACAAAATTGGAGAAGGA+AGG | 0.497417 | 4_3:+50741405 | Msa0645460:intron |
GAGAAAAGTCCTCCAACTGT+TGG | 0.515763 | 4_3:-50738342 | None:intergenic |
TCAGAAATGGCTATAGAAAG+AGG | 0.531378 | 4_3:+50738363 | Msa0645460:CDS |
ACTGTTCAACCAACAGTTGG+AGG | 0.537630 | 4_3:+50738333 | Msa0645460:CDS |
TTTGGTTACTTCCAATACCA+TGG | 0.556225 | 4_3:-50738155 | None:intergenic |
TTGGAGAAGGAAGGAATCAA+AGG | 0.560037 | 4_3:+50741414 | Msa0645460:CDS |
CTTCCAATACCATGGAGACA+TGG | 0.561407 | 4_3:-50738147 | None:intergenic |
AGATATTGGTGCAGTTCTTG+TGG | 0.562515 | 4_3:+50741512 | Msa0645460:CDS |
AAAAGAGACAAAATTGGAGA+AGG | 0.563624 | 4_3:+50741401 | Msa0645460:intron |
TGACTTACCGGGATCTAGCT+CGG | 0.577812 | 4_3:-50738442 | None:intergenic |
CAGAAATGGCTATAGAAAGA+GGG | 0.580132 | 4_3:+50738364 | Msa0645460:CDS |
TTGAACAAGCCATGTCTCCA+TGG | 0.586444 | 4_3:+50738138 | Msa0645460:CDS |
GTTACTGTTCAACCAACAGT+TGG | 0.586551 | 4_3:+50738330 | Msa0645460:CDS |
CCACTGATCTATGCGTCTGG+TGG | 0.602891 | 4_3:-50741443 | None:intergenic |
AAATGACCCTCTTATCATCA+GGG | 0.603935 | 4_3:-50741644 | None:intergenic |
TGTGGAAAATGAGCATAGAA+GGG | 0.608699 | 4_3:+50741530 | Msa0645460:CDS |
GAAGCTGAATTTGAAGTACC+AGG | 0.611074 | 4_3:+50741480 | Msa0645460:CDS |
TGACAACCCTGATGATAAGA+GGG | 0.622995 | 4_3:+50741638 | Msa0645460:CDS |
TCATAAACCAAAAGAAACAA+AGG | 0.629237 | 4_3:+50738211 | Msa0645460:CDS |
CCACCAGACGCATAGATCAG+TGG | 0.649521 | 4_3:+50741443 | Msa0645460:CDS |
TAAACCAAAAGAAACAAAGG+AGG | 0.689233 | 4_3:+50738214 | Msa0645460:CDS |
TGTTGGTTGAACAGTAACTG+TGG | 0.746011 | 4_3:-50738325 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TATAAAATAATTTAAATAAA+GGG | - | chr4_3:50739478-50739497 | None:intergenic | 0.0% |
!!! | CATGTTTTTAAAAAAAATTA+GGG | + | chr4_3:50738919-50738938 | Msa0645460:intron | 10.0% |
!!! | TAATTTTATTTAATTACTAG+AGG | + | chr4_3:50739151-50739170 | Msa0645460:intron | 10.0% |
!! | TAAATTATTAATTAGAAAGA+TGG | - | chr4_3:50739390-50739409 | None:intergenic | 10.0% |
!! | TAATTAAATCTCATTAAAAT+AGG | + | chr4_3:50739670-50739689 | Msa0645460:intron | 10.0% |
!!! | AAAAAATGATCAAATATTTT+TGG | - | chr4_3:50739762-50739781 | None:intergenic | 10.0% |
!!! | AATATTTGATCATTTTTTTA+AGG | + | chr4_3:50739764-50739783 | Msa0645460:intron | 10.0% |
!!! | ATCAATTTTAATATATACAA+TGG | - | chr4_3:50739831-50739850 | None:intergenic | 10.0% |
!! | ATATAGAAAAAAATTGTTTA+AGG | + | chr4_3:50740297-50740316 | Msa0645460:intron | 10.0% |
!! | TATAGAAAAAAATTGTTTAA+GGG | + | chr4_3:50740298-50740317 | Msa0645460:intron | 10.0% |
!! | TTTGTTAATTATTTAATTGT+TGG | - | chr4_3:50740725-50740744 | None:intergenic | 10.0% |
!!! | CAATTAATTTTATTTTTGTT+TGG | - | chr4_3:50741317-50741336 | None:intergenic | 10.0% |
!! | TTAAATAATCCGTAAAAAAT+CGG | - | chr4_3:50738621-50738640 | None:intergenic | 15.0% |
!!! | CCTAATTTTTTTTAAAAACA+TGG | - | chr4_3:50738921-50738940 | None:intergenic | 15.0% |
!!! | CCATGTTTTTAAAAAAAATT+AGG | + | chr4_3:50738918-50738937 | Msa0645460:intron | 15.0% |
!!! | TATAGAAAAACTTTTTTTTC+AGG | - | chr4_3:50739312-50739331 | None:intergenic | 15.0% |
!! | TATGTATCATATTTATATAC+AGG | - | chr4_3:50739421-50739440 | None:intergenic | 15.0% |
!! | GTTTAAATAAAGGATAAAAA+TGG | - | chr4_3:50739604-50739623 | None:intergenic | 15.0% |
!!! | AATATTTTTGGCAAATAATA+AGG | - | chr4_3:50739750-50739769 | None:intergenic | 15.0% |
!! | TTCATTAGCAATATTATAAA+AGG | + | chr4_3:50739928-50739947 | Msa0645460:intron | 15.0% |
!! | CAATATTATCTATACTATAT+GGG | - | chr4_3:50740371-50740390 | None:intergenic | 15.0% |
!! | ACAATATTATCTATACTATA+TGG | - | chr4_3:50740372-50740391 | None:intergenic | 15.0% |
!! | ACAAAATAAAAGATTATGAA+AGG | - | chr4_3:50741074-50741093 | None:intergenic | 15.0% |
!!! | TTTTATTTTGTGTTTTGATT+TGG | + | chr4_3:50741083-50741102 | Msa0645460:intron | 15.0% |
!!! | TTAATTGACCTTTTTTTTTT+AGG | + | chr4_3:50741330-50741349 | Msa0645460:intron | 15.0% |
!!! | TAATTGACCTTTTTTTTTTA+GGG | + | chr4_3:50741331-50741350 | Msa0645460:intron | 15.0% |
!! | ATTAATTCCCTAAAAAAAAA+AGG | - | chr4_3:50741341-50741360 | None:intergenic | 15.0% |
!!! | TTTTTTTTCCTAAAGCAATA+AGG | + | chr4_3:50738590-50738609 | Msa0645460:intron | 20.0% |
!! | TTGAAGAAAACTACATTTAA+GGG | - | chr4_3:50739030-50739049 | None:intergenic | 20.0% |
!! | TTTGAAGAAAACTACATTTA+AGG | - | chr4_3:50739031-50739050 | None:intergenic | 20.0% |
!! | TATAGAAAGAGATATCAATT+TGG | + | chr4_3:50739228-50739247 | Msa0645460:intron | 20.0% |
!! | ATCATATTTATATACAGGTA+TGG | - | chr4_3:50739416-50739435 | None:intergenic | 20.0% |
!! | AATATTATCTAATTGTTGTG+TGG | - | chr4_3:50739701-50739720 | None:intergenic | 20.0% |
!! | TAACGCGTATAAATTATTAA+CGG | + | chr4_3:50740102-50740121 | Msa0645460:intron | 20.0% |
!!! | AAGATAAACATAGTCTTTTT+GGG | - | chr4_3:50740207-50740226 | None:intergenic | 20.0% |
!!! | AAAGATAAACATAGTCTTTT+TGG | - | chr4_3:50740208-50740227 | None:intergenic | 20.0% |
!! | ATTACTAACATTATCAACAT+TGG | + | chr4_3:50740523-50740542 | Msa0645460:intron | 20.0% |
!! | ATATTCATAACTATCAACAT+TGG | + | chr4_3:50740645-50740664 | Msa0645460:intron | 20.0% |
!! | CAAAATAAGTTCAATTCAAA+CGG | + | chr4_3:50740988-50741007 | Msa0645460:intron | 20.0% |
!! | AAAATAAGTTCAATTCAAAC+GGG | + | chr4_3:50740989-50741008 | Msa0645460:intron | 20.0% |
!! | TGTTAGATTATAATTATTCG+TGG | + | chr4_3:50741131-50741150 | Msa0645460:intron | 20.0% |
!!! | TTCTTTTGGTTTATGAACAA+AGG | - | chr4_3:50738207-50738226 | None:intergenic | 25.0% |
! | TCATAAACCAAAAGAAACAA+AGG | + | chr4_3:50738211-50738230 | Msa0645460:CDS | 25.0% |
!! | AATTGATTTACCCAACAAAT+CGG | - | chr4_3:50738403-50738422 | None:intergenic | 25.0% |
!!! | TTAACTTTGGAATTTAGGTT+GGG | + | chr4_3:50738468-50738487 | Msa0645460:intron | 25.0% |
!!! | CATTTTAAGCTGTTTTTAAC+TGG | - | chr4_3:50738964-50738983 | None:intergenic | 25.0% |
! | CTATATATTCAGTGAATGTT+TGG | - | chr4_3:50739096-50739115 | None:intergenic | 25.0% |
! | ACATTCACTGAATATATAGT+TGG | + | chr4_3:50739097-50739116 | Msa0645460:intron | 25.0% |
! | AAATAAGCACAGTAGAAAAA+CGG | - | chr4_3:50739205-50739224 | None:intergenic | 25.0% |
! | AGTGTTATATAGTGTTCTTA+TGG | + | chr4_3:50739331-50739350 | Msa0645460:intron | 25.0% |
! | TGGTTAAATCTCACTAAAAT+AGG | - | chr4_3:50739370-50739389 | None:intergenic | 25.0% |
!! | AAATATGATACATAGCTTTG+TGG | + | chr4_3:50739427-50739446 | Msa0645460:intron | 25.0% |
! | TAATCAGCAATCTACATAAA+TGG | + | chr4_3:50739858-50739877 | Msa0645460:intron | 25.0% |
! | TAGGTAGTAGTAATATAAAG+AGG | - | chr4_3:50740033-50740052 | None:intergenic | 25.0% |
! | TTACTACTACCTAAAAAAAG+AGG | + | chr4_3:50740040-50740059 | Msa0645460:intron | 25.0% |
! | ATTATCTATACTATATGGGA+AGG | - | chr4_3:50740367-50740386 | None:intergenic | 25.0% |
!! | AACATTATCAACATTGGTTA+CGG | + | chr4_3:50740529-50740548 | Msa0645460:intron | 25.0% |
!! | TCATTTTACGTTCTAATAAG+AGG | - | chr4_3:50740574-50740593 | None:intergenic | 25.0% |
!! | ATAACTATCAACATTGGTTA+CGG | + | chr4_3:50740651-50740670 | Msa0645460:intron | 25.0% |
!! | TCATTTTACGTTCTAATAAG+AGG | - | chr4_3:50740574-50740593 | None:intergenic | 25.0% |
! | AAATAAGTTCAATTCAAACG+GGG | + | chr4_3:50740990-50741009 | Msa0645460:intron | 25.0% |
!!! | ACGTCAATTTTAGCATATAT+TGG | - | chr4_3:50741284-50741303 | None:intergenic | 25.0% |
! | GGGAAAAATACAAGTAATTA+AGG | - | chr4_3:50741367-50741386 | None:intergenic | 25.0% |
!!! | TTGTATTTTTCCCTTGTTTT+TGG | + | chr4_3:50741374-50741393 | Msa0645460:intron | 25.0% |
!! | TCTTTTTGAACCAAAAACAA+GGG | - | chr4_3:50741387-50741406 | None:intergenic | 25.0% |
! | ATAAAGCAAATTGTTCTTGA+TGG | + | chr4_3:50741561-50741580 | Msa0645460:CDS | 25.0% |
!! | TCAATTTTTCTTGTGAATCA+TGG | + | chr4_3:50741601-50741620 | Msa0645460:CDS | 25.0% |
!! | CAATTTTTCTTGTGAATCAT+GGG | + | chr4_3:50741602-50741621 | Msa0645460:CDS | 25.0% |
TTGTTCAAGATGAGACAATT+TGG | - | chr4_3:50738126-50738145 | None:intergenic | 30.0% | |
! | AACCAAACATGTTTTCATGT+TGG | + | chr4_3:50738171-50738190 | Msa0645460:CDS | 30.0% |
ATCCAACATGAAAACATGTT+TGG | - | chr4_3:50738176-50738195 | None:intergenic | 30.0% | |
TAAACCAAAAGAAACAAAGG+AGG | + | chr4_3:50738214-50738233 | Msa0645460:CDS | 30.0% | |
!! | CACTCTTAACTTTGGAATTT+AGG | + | chr4_3:50738463-50738482 | Msa0645460:intron | 30.0% |
!! | CTTAACTTTGGAATTTAGGT+TGG | + | chr4_3:50738467-50738486 | Msa0645460:intron | 30.0% |
ATATAGTGTTCTTATGGTAG+TGG | + | chr4_3:50739337-50739356 | Msa0645460:intron | 30.0% | |
!! | AAATGTGACACATAGTTTTG+TGG | + | chr4_3:50739565-50739584 | Msa0645460:intron | 30.0% |
CGTTAGCGCAATAAAAAAAA+CGG | - | chr4_3:50740087-50740106 | None:intergenic | 30.0% | |
AATAAGAGGAATTGCTCATT+TGG | - | chr4_3:50740560-50740579 | None:intergenic | 30.0% | |
AATAAGAGGAATTGCTCATT+TGG | - | chr4_3:50740560-50740579 | None:intergenic | 30.0% | |
TTTCTTACTTCTACCAGATA+AGG | - | chr4_3:50741233-50741252 | None:intergenic | 30.0% | |
! | CTCTTTTTGAACCAAAAACA+AGG | - | chr4_3:50741388-50741407 | None:intergenic | 30.0% |
GGTTCAAAAAGAGACAAAAT+TGG | + | chr4_3:50741395-50741414 | Msa0645460:intron | 30.0% | |
AAAAGAGACAAAATTGGAGA+AGG | + | chr4_3:50741401-50741420 | Msa0645460:intron | 30.0% | |
GATTCACAAGAAAAATTGAC+AGG | - | chr4_3:50741600-50741619 | None:intergenic | 30.0% | |
TTTGGTTACTTCCAATACCA+TGG | - | chr4_3:50738158-50738177 | None:intergenic | 35.0% | |
!! | ACAACCTCCTTTGTTTCTTT+TGG | - | chr4_3:50738221-50738240 | None:intergenic | 35.0% |
AGAAACAAAGGAGGTTGTTT+AGG | + | chr4_3:50738223-50738242 | Msa0645460:intron | 35.0% | |
TCAGAAATGGCTATAGAAAG+AGG | + | chr4_3:50738363-50738382 | Msa0645460:CDS | 35.0% | |
CAGAAATGGCTATAGAAAGA+GGG | + | chr4_3:50738364-50738383 | Msa0645460:CDS | 35.0% | |
!! | TGATGACATAACCGATTTGT+TGG | + | chr4_3:50738389-50738408 | Msa0645460:CDS | 35.0% |
!! | GATGACATAACCGATTTGTT+GGG | + | chr4_3:50738390-50738409 | Msa0645460:CDS | 35.0% |
GTTGGGTAAATCAATTCTCT+TGG | + | chr4_3:50738407-50738426 | Msa0645460:CDS | 35.0% | |
AAAGTTAAGAGTGACTTACC+GGG | - | chr4_3:50738456-50738475 | None:intergenic | 35.0% | |
CAAAGTTAAGAGTGACTTAC+CGG | - | chr4_3:50738457-50738476 | None:intergenic | 35.0% | |
!!! | AAGGCAATGCCGATTTTTTA+CGG | + | chr4_3:50738609-50738628 | Msa0645460:intron | 35.0% |
AAAAATGCCACTACAAACGT+GGG | + | chr4_3:50738840-50738859 | Msa0645460:intron | 35.0% | |
TCAGTGAATGTTTGGATTGA+AGG | - | chr4_3:50739088-50739107 | None:intergenic | 35.0% | |
!!! | GTGAGTACTCCTCTTTTTTT+AGG | - | chr4_3:50740052-50740071 | None:intergenic | 35.0% |
TACTATATGGGAAGGAGATA+GGG | - | chr4_3:50740359-50740378 | None:intergenic | 35.0% | |
ATACTATATGGGAAGGAGAT+AGG | - | chr4_3:50740360-50740379 | None:intergenic | 35.0% | |
!!! | TACATCGAGTGTCATTTTGT+TGG | - | chr4_3:50741016-50741035 | None:intergenic | 35.0% |
TAAGTACAAGATGTGACAAG+AGG | - | chr4_3:50741157-50741176 | None:intergenic | 35.0% | |
TTAACCTCATATGCCTTATC+TGG | + | chr4_3:50741217-50741236 | Msa0645460:intron | 35.0% | |
!!! | TAGCAGAACGTTGTTTTTCT+AGG | + | chr4_3:50741255-50741274 | Msa0645460:intron | 35.0% |
!!! | AGCAGAACGTTGTTTTTCTA+GGG | + | chr4_3:50741256-50741275 | Msa0645460:intron | 35.0% |
!! | TTTGAAGTACCAGGAAGTTT+TGG | + | chr4_3:50741489-50741508 | Msa0645460:CDS | 35.0% |
TTGTGGAAAATGAGCATAGA+AGG | + | chr4_3:50741529-50741548 | Msa0645460:CDS | 35.0% | |
TGTGGAAAATGAGCATAGAA+GGG | + | chr4_3:50741530-50741549 | Msa0645460:CDS | 35.0% | |
AAATGACCCTCTTATCATCA+GGG | - | chr4_3:50741647-50741666 | None:intergenic | 35.0% | |
AAAATGACCCTCTTATCATC+AGG | - | chr4_3:50741648-50741667 | None:intergenic | 35.0% | |
! | GTTTTCATGTTGGATCGTCA+AGG | + | chr4_3:50738181-50738200 | Msa0645460:CDS | 40.0% |
AACAAAGGAGGTTGTTTAGG+AGG | + | chr4_3:50738226-50738245 | Msa0645460:intron | 40.0% | |
! | TGTTGGTTGAACAGTAACTG+TGG | - | chr4_3:50738328-50738347 | None:intergenic | 40.0% |
GTTACTGTTCAACCAACAGT+TGG | + | chr4_3:50738330-50738349 | Msa0645460:CDS | 40.0% | |
! | TGGAGGACTTTTCTCAGAAA+TGG | + | chr4_3:50738350-50738369 | Msa0645460:CDS | 40.0% |
CGGTAAGTCACTCTTAACTT+TGG | + | chr4_3:50738455-50738474 | Msa0645460:intron | 40.0% | |
CAAAAATGCCACTACAAACG+TGG | + | chr4_3:50738839-50738858 | Msa0645460:intron | 40.0% | |
!!! | TGTGACACATAGTTTTGTGG+TGG | + | chr4_3:50739568-50739587 | Msa0645460:intron | 40.0% |
ATAGAAAGAGCAAGAGCAAG+AGG | + | chr4_3:50739989-50740008 | Msa0645460:intron | 40.0% | |
TCTACCAGATAAGGCATATG+AGG | - | chr4_3:50741224-50741243 | None:intergenic | 40.0% | |
!!! | GCAGAACGTTGTTTTTCTAG+GGG | + | chr4_3:50741257-50741276 | Msa0645460:intron | 40.0% |
GAGACAAAATTGGAGAAGGA+AGG | + | chr4_3:50741405-50741424 | Msa0645460:intron | 40.0% | |
TTGGAGAAGGAAGGAATCAA+AGG | + | chr4_3:50741414-50741433 | Msa0645460:CDS | 40.0% | |
! | GAAGCTGAATTTGAAGTACC+AGG | + | chr4_3:50741480-50741499 | Msa0645460:CDS | 40.0% |
CCAATATCTCCAAAACTTCC+TGG | - | chr4_3:50741501-50741520 | None:intergenic | 40.0% | |
!!! | CCAGGAAGTTTTGGAGATAT+TGG | + | chr4_3:50741498-50741517 | Msa0645460:CDS | 40.0% |
AGATATTGGTGCAGTTCTTG+TGG | + | chr4_3:50741512-50741531 | Msa0645460:CDS | 40.0% | |
ATGACAACCCTGATGATAAG+AGG | + | chr4_3:50741637-50741656 | Msa0645460:CDS | 40.0% | |
TGACAACCCTGATGATAAGA+GGG | + | chr4_3:50741638-50741657 | Msa0645460:CDS | 40.0% | |
TTGAACAAGCCATGTCTCCA+TGG | + | chr4_3:50738138-50738157 | Msa0645460:CDS | 45.0% | |
AAGCCATGTCTCCATGGTAT+TGG | + | chr4_3:50738144-50738163 | Msa0645460:CDS | 45.0% | |
CTTCCAATACCATGGAGACA+TGG | - | chr4_3:50738150-50738169 | None:intergenic | 45.0% | |
ACTGTTCAACCAACAGTTGG+AGG | + | chr4_3:50738333-50738352 | Msa0645460:CDS | 45.0% | |
GAGAAAAGTCCTCCAACTGT+TGG | - | chr4_3:50738345-50738364 | None:intergenic | 45.0% | |
GGGTGCAATAAGATAGTCTG+TGG | + | chr4_3:50738488-50738507 | Msa0645460:intron | 45.0% | |
! | CGGCATTGCCTTATTGCTTT+AGG | - | chr4_3:50738601-50738620 | None:intergenic | 45.0% |
AGCTTCGTTTCAACACTCGT+TGG | - | chr4_3:50738781-50738800 | None:intergenic | 45.0% | |
CTCTATACCCACGTTTGTAG+TGG | - | chr4_3:50738850-50738869 | None:intergenic | 45.0% | |
CACTACAAACGTGGGTATAG+AGG | + | chr4_3:50738848-50738867 | Msa0645460:intron | 45.0% | |
! | GGGAAGGAGATAGGGATTTT+AGG | - | chr4_3:50740351-50740370 | None:intergenic | 45.0% |
! | GTTCTTGATGGCTTTCTCAC+TGG | + | chr4_3:50741573-50741592 | Msa0645460:CDS | 45.0% |
ATCATCAGGGTTGTCATGCT+TGG | - | chr4_3:50741634-50741653 | None:intergenic | 45.0% | |
!! | GTATAAAATAATTTAAATAA+AGG | - | chr4_3:50739479-50739498 | None:intergenic | 5.0% |
!! | TAAAAAAATAGTTTAAATAA+AGG | - | chr4_3:50739614-50739633 | None:intergenic | 5.0% |
!! | TTGTTTAATATTTAAATAAA+TGG | + | chr4_3:50740484-50740503 | Msa0645460:intron | 5.0% |
!! | TTAATTAATTATTTAATTGT+TGG | - | chr4_3:50740603-50740622 | None:intergenic | 5.0% |
TGACTTACCGGGATCTAGCT+CGG | - | chr4_3:50738445-50738464 | None:intergenic | 50.0% | |
CGGATAAACGAGCACAAGAG+TGG | - | chr4_3:50739185-50739204 | None:intergenic | 50.0% | |
CTTCCACTGATCTATGCGTC+TGG | - | chr4_3:50741449-50741468 | None:intergenic | 50.0% | |
GTTAGCTCCGAGCTAGATCC+CGG | + | chr4_3:50738435-50738454 | Msa0645460:CDS | 55.0% | |
CCACTGATCTATGCGTCTGG+TGG | - | chr4_3:50741446-50741465 | None:intergenic | 55.0% | |
CCACCAGACGCATAGATCAG+TGG | + | chr4_3:50741443-50741462 | Msa0645460:CDS | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4_3 | gene | 50738084 | 50741677 | 50738084 | ID=Msa0645460;Name=Msa0645460 |
chr4_3 | mRNA | 50738084 | 50741677 | 50738084 | ID=Msa0645460-mRNA-1;Parent=Msa0645460;Name=Msa0645460-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|0.5|0.33|1|0.5|0.33|3|0|212 |
chr4_3 | exon | 50738084 | 50738235 | 50738084 | ID=Msa0645460-mRNA-1:exon:12085;Parent=Msa0645460-mRNA-1 |
chr4_3 | exon | 50738245 | 50738456 | 50738245 | ID=Msa0645460-mRNA-1:exon:12086;Parent=Msa0645460-mRNA-1 |
chr4_3 | exon | 50741406 | 50741677 | 50741406 | ID=Msa0645460-mRNA-1:exon:12087;Parent=Msa0645460-mRNA-1 |
chr4_3 | CDS | 50738084 | 50738235 | 50738084 | ID=Msa0645460-mRNA-1:cds;Parent=Msa0645460-mRNA-1 |
chr4_3 | CDS | 50738245 | 50738456 | 50738245 | ID=Msa0645460-mRNA-1:cds;Parent=Msa0645460-mRNA-1 |
chr4_3 | CDS | 50741406 | 50741677 | 50741406 | ID=Msa0645460-mRNA-1:cds;Parent=Msa0645460-mRNA-1 |
Gene Sequence |
Protein sequence |