Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0366420 | KEH34477.1 | 87.578 | 161 | 20 | 0 | 1 | 161 | 1 | 161 | 3.49e-99 | 292 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0366420 | sp|Q9FJK3|AGL80_ARATH | 48.718 | 156 | 77 | 2 | 1 | 155 | 1 | 154 | 3.87e-36 | 130 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0366420 | A0A072UY35 | 87.578 | 161 | 20 | 0 | 1 | 161 | 1 | 161 | 1.67e-99 | 292 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0366420 | TF | MADS-M-type |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0227480 | Msa0366420 | 0.826586 | 2.501385e-54 | -8.615850e-47 |
| Msa0365500 | Msa0366420 | 0.803094 | 4.106377e-49 | -8.615850e-47 |
| Msa0366420 | Msa0414410 | 0.909708 | 4.224088e-82 | -8.615850e-47 |
| Msa0366420 | Msa0414420 | 0.855898 | 4.630127e-62 | -8.615850e-47 |
| Msa0366420 | Msa0452900 | 0.830508 | 2.822722e-55 | -8.615850e-47 |
| Msa0366420 | Msa0459160 | 0.909125 | 8.047202e-82 | -8.615850e-47 |
| Msa0366420 | Msa0459170 | 0.801206 | 1.004334e-48 | -8.615850e-47 |
| Msa0366420 | Msa0506190 | 0.809060 | 2.280473e-50 | -8.615850e-47 |
| Msa0366420 | Msa0564890 | 0.818507 | 1.891238e-52 | -8.615850e-47 |
| Msa0366420 | Msa0743810 | 0.805984 | 1.025303e-49 | -8.615850e-47 |
| Msa0366420 | Msa0808010 | 0.809804 | 1.579125e-50 | -8.615850e-47 |
| Msa0366420 | Msa0808020 | 0.801958 | 7.042930e-49 | -8.615850e-47 |
| Msa0366420 | Msa0825860 | 0.806760 | 7.033393e-50 | -8.615850e-47 |
| Msa0366420 | Msa0981370 | 0.818776 | 1.643140e-52 | -8.615850e-47 |
| Msa0366420 | Msa1016280 | 0.817578 | 3.066152e-52 | -8.615850e-47 |
| Msa0366420 | Msa1025360 | 0.834421 | 3.025962e-56 | -8.615850e-47 |
| Msa0366420 | Msa1025370 | 0.825153 | 5.473996e-54 | -8.615850e-47 |
| Msa0366420 | Msa1044830 | 0.829016 | 6.517025e-55 | -8.615850e-47 |
| Msa0366420 | Msa1044840 | 0.836445 | 9.320127e-57 | -8.615850e-47 |
| Msa0366420 | Msa1100980 | 0.827306 | 1.682711e-54 | -8.615850e-47 |
| Msa0366420 | Msa1109440 | 0.813087 | 3.056335e-51 | -8.615850e-47 |
| Msa0366420 | Msa1121200 | 0.830550 | 2.757168e-55 | -8.615850e-47 |
| Msa0366420 | Msa1135740 | 0.807130 | 5.874108e-50 | -8.615850e-47 |
| Msa0366420 | Msa1146110 | 0.801448 | 8.962624e-49 | -8.615850e-47 |
| Msa0366420 | Msa1192640 | 0.810894 | 9.185596e-51 | -8.615850e-47 |
| Msa0366420 | Msa1270230 | 0.825735 | 3.986480e-54 | -8.615850e-47 |
| Msa0366420 | Msa1283330 | 0.817365 | 3.425313e-52 | -8.615850e-47 |
| Msa0366420 | Msa1285930 | 0.817359 | 3.436251e-52 | -8.615850e-47 |
| Msa0366420 | Msa1287800 | 0.829877 | 4.025934e-55 | -8.615850e-47 |
| Msa0366420 | Msa1287810 | 0.837985 | 3.762913e-57 | -8.615850e-47 |
| Msa0366420 | Msa1433120 | 0.813758 | 2.176440e-51 | -8.615850e-47 |
| Msa0267000 | Msa0366420 | 0.822307 | 2.540889e-53 | -8.615850e-47 |
| Msa0267010 | Msa0366420 | 0.824213 | 9.115379e-54 | -8.615850e-47 |
| Msa0342240 | Msa0366420 | 0.808890 | 2.479723e-50 | -8.615850e-47 |
| Msa0360510 | Msa0366420 | 0.815801 | 7.675280e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0366420 | MtrunA17_Chr3g0107461 | 87.578 | 161 | 20 | 0 | 1 | 161 | 1 | 161 | 3.21e-103 | 292 |
| Msa0366420 | MtrunA17_Chr4g0031421 | 77.444 | 133 | 30 | 0 | 29 | 161 | 1 | 133 | 1.60e-71 | 211 |
| Msa0366420 | MtrunA17_Chr3g0105791 | 75.188 | 133 | 33 | 0 | 29 | 161 | 1 | 133 | 5.03e-69 | 205 |
| Msa0366420 | MtrunA17_Chr3g0107381 | 54.545 | 154 | 69 | 1 | 1 | 154 | 1 | 153 | 8.74e-56 | 174 |
| Msa0366420 | MtrunA17_Chr3g0110131 | 49.032 | 155 | 78 | 1 | 1 | 155 | 1 | 154 | 2.20e-41 | 138 |
| Msa0366420 | MtrunA17_Chr2g0283941 | 42.308 | 156 | 90 | 0 | 5 | 160 | 5 | 160 | 2.93e-40 | 135 |
| Msa0366420 | MtrunA17_Chr2g0296861 | 46.452 | 155 | 82 | 1 | 1 | 155 | 1 | 154 | 2.27e-39 | 130 |
| Msa0366420 | MtrunA17_Chr8g0351751 | 41.509 | 159 | 91 | 1 | 1 | 157 | 1 | 159 | 2.39e-36 | 125 |
| Msa0366420 | MtrunA17_Chr4g0014321 | 37.662 | 154 | 96 | 0 | 1 | 154 | 1 | 154 | 3.87e-36 | 124 |
| Msa0366420 | MtrunA17_Chr4g0014131 | 44.099 | 161 | 90 | 0 | 1 | 161 | 1 | 161 | 8.88e-36 | 124 |
| Msa0366420 | MtrunA17_Chr5g0432691 | 38.961 | 154 | 93 | 1 | 1 | 154 | 1 | 153 | 1.43e-35 | 121 |
| Msa0366420 | MtrunA17_Chr4g0014031 | 43.590 | 156 | 88 | 0 | 1 | 156 | 1 | 156 | 2.79e-35 | 122 |
| Msa0366420 | MtrunA17_Chr3g0107331 | 41.722 | 151 | 87 | 1 | 3 | 153 | 2 | 151 | 1.34e-34 | 119 |
| Msa0366420 | MtrunA17_Chr3g0106421 | 44.697 | 132 | 73 | 0 | 29 | 160 | 1 | 132 | 1.00e-33 | 118 |
| Msa0366420 | MtrunA17_Chr4g0014121 | 40.385 | 156 | 93 | 0 | 1 | 156 | 29 | 184 | 1.62e-32 | 114 |
| Msa0366420 | MtrunA17_Chr2g0296831 | 48.361 | 122 | 63 | 0 | 1 | 122 | 1 | 122 | 1.61e-31 | 109 |
| Msa0366420 | MtrunA17_Chr3g0106501 | 45.736 | 129 | 70 | 0 | 29 | 157 | 1 | 129 | 2.89e-31 | 110 |
| Msa0366420 | MtrunA17_Chr3g0107351 | 37.419 | 155 | 96 | 1 | 3 | 157 | 2 | 155 | 1.64e-30 | 108 |
| Msa0366420 | MtrunA17_Chr4g0013041 | 37.209 | 172 | 87 | 4 | 1 | 157 | 1 | 166 | 1.75e-30 | 109 |
| Msa0366420 | MtrunA17_Chr5g0420351 | 38.217 | 157 | 95 | 2 | 1 | 157 | 1 | 155 | 2.48e-30 | 107 |
| Msa0366420 | MtrunA17_Chr3g0107341 | 38.158 | 152 | 93 | 1 | 3 | 154 | 2 | 152 | 1.57e-28 | 103 |
| Msa0366420 | MtrunA17_Chr3g0107361 | 38.158 | 152 | 93 | 1 | 3 | 154 | 2 | 152 | 1.81e-28 | 103 |
| Msa0366420 | MtrunA17_Chr1g0188681 | 38.217 | 157 | 95 | 2 | 1 | 157 | 1 | 155 | 2.71e-28 | 102 |
| Msa0366420 | MtrunA17_Chr1g0197461 | 34.194 | 155 | 100 | 2 | 3 | 157 | 2 | 154 | 5.55e-27 | 99.4 |
| Msa0366420 | MtrunA17_Chr1g0188661 | 37.342 | 158 | 95 | 3 | 1 | 157 | 1 | 155 | 8.53e-26 | 96.3 |
| Msa0366420 | MtrunA17_Chr4g0012761 | 37.580 | 157 | 96 | 2 | 1 | 157 | 1 | 155 | 1.58e-25 | 95.5 |
| Msa0366420 | MtrunA17_Chr1g0197261 | 32.903 | 155 | 100 | 3 | 1 | 154 | 1 | 152 | 2.13e-24 | 92.4 |
| Msa0366420 | MtrunA17_Chr1g0197321 | 33.333 | 159 | 101 | 3 | 1 | 157 | 1 | 156 | 5.83e-24 | 91.7 |
| Msa0366420 | MtrunA17_Chr7g0218151 | 35.669 | 157 | 99 | 2 | 1 | 157 | 1 | 155 | 6.91e-24 | 91.3 |
| Msa0366420 | MtrunA17_Chr1g0188651 | 36.025 | 161 | 99 | 2 | 1 | 161 | 1 | 157 | 1.03e-23 | 90.9 |
| Msa0366420 | MtrunA17_Chr1g0193311 | 36.076 | 158 | 97 | 3 | 1 | 157 | 1 | 155 | 3.62e-23 | 89.4 |
| Msa0366420 | MtrunA17_Chr4g0008701 | 28.188 | 149 | 100 | 3 | 3 | 148 | 6 | 150 | 1.48e-14 | 70.1 |
| Msa0366420 | MtrunA17_Chr7g0267601 | 26.452 | 155 | 106 | 4 | 3 | 154 | 6 | 155 | 5.19e-14 | 68.6 |
| Msa0366420 | MtrunA17_Chr3g0128721 | 24.183 | 153 | 107 | 2 | 5 | 153 | 8 | 155 | 7.83e-12 | 62.4 |
| Msa0366420 | MtrunA17_Chr6g0457851 | 29.204 | 113 | 73 | 3 | 1 | 107 | 11 | 122 | 2.42e-11 | 60.5 |
| Msa0366420 | MtrunA17_Chr1g0212151 | 28.448 | 116 | 76 | 3 | 1 | 110 | 1 | 115 | 4.25e-11 | 60.1 |
| Msa0366420 | MtrunA17_Chr2g0279821 | 30.973 | 113 | 76 | 1 | 1 | 113 | 1 | 111 | 5.91e-11 | 58.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0366420 | AT5G48670.1 | 48.718 | 156 | 77 | 2 | 1 | 155 | 1 | 154 | 3.93e-37 | 130 |
| Msa0366420 | AT3G05860.2 | 48.718 | 117 | 56 | 1 | 1 | 113 | 1 | 117 | 1.30e-30 | 110 |
| Msa0366420 | AT3G05860.3 | 47.107 | 121 | 60 | 1 | 1 | 117 | 1 | 121 | 2.91e-30 | 110 |
| Msa0366420 | AT3G05860.1 | 47.107 | 121 | 60 | 1 | 1 | 117 | 1 | 121 | 3.83e-30 | 110 |
| Msa0366420 | AT1G65330.1 | 41.216 | 148 | 86 | 1 | 3 | 150 | 2 | 148 | 5.17e-30 | 110 |
| Msa0366420 | AT1G65300.1 | 39.490 | 157 | 93 | 2 | 5 | 161 | 4 | 158 | 2.36e-29 | 108 |
| Msa0366420 | AT5G27810.1 | 51.685 | 89 | 43 | 0 | 29 | 117 | 1 | 89 | 3.85e-27 | 99.0 |
| Msa0366420 | AT5G26650.1 | 35.294 | 153 | 98 | 1 | 5 | 157 | 3 | 154 | 1.13e-23 | 95.5 |
| Msa0366420 | AT5G27960.1 | 37.226 | 137 | 85 | 1 | 5 | 141 | 3 | 138 | 1.65e-22 | 91.7 |
| Msa0366420 | AT1G31630.1 | 35.625 | 160 | 85 | 5 | 3 | 154 | 2 | 151 | 1.21e-21 | 89.7 |
| Msa0366420 | AT1G22590.2 | 32.500 | 160 | 91 | 2 | 1 | 157 | 1 | 146 | 1.45e-21 | 85.9 |
| Msa0366420 | AT1G31640.1 | 38.365 | 159 | 84 | 4 | 3 | 155 | 2 | 152 | 2.70e-21 | 89.7 |
| Msa0366420 | AT5G26630.1 | 34.194 | 155 | 101 | 1 | 1 | 155 | 1 | 154 | 8.14e-21 | 85.1 |
| Msa0366420 | AT2G28700.1 | 32.667 | 150 | 100 | 1 | 1 | 150 | 1 | 149 | 8.24e-21 | 87.0 |
| Msa0366420 | AT5G06500.1 | 33.333 | 147 | 88 | 3 | 1 | 147 | 1 | 137 | 1.09e-19 | 82.8 |
| Msa0366420 | AT5G26580.1 | 36.634 | 101 | 50 | 1 | 1 | 101 | 1 | 87 | 2.83e-13 | 66.6 |
| Msa0366420 | AT5G26865.1 | 43.056 | 72 | 40 | 1 | 24 | 94 | 2 | 73 | 1.79e-12 | 61.2 |
| Msa0366420 | AT2G40210.1 | 32.673 | 101 | 68 | 0 | 1 | 101 | 1 | 101 | 2.27e-12 | 63.9 |
| Msa0366420 | AT5G27090.1 | 39.024 | 82 | 49 | 1 | 14 | 94 | 30 | 111 | 1.54e-11 | 60.1 |
| Msa0366420 | AT5G27944.1 | 43.056 | 72 | 40 | 1 | 24 | 94 | 41 | 112 | 2.61e-11 | 60.1 |
Find 33 sgRNAs with CRISPR-Local
Find 39 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTGGTCATTTCCTGCTTTC+TGG | 0.066665 | 3_1:-61320227 | None:intergenic |
| ATTCATACCACAGAATTTAA+TGG | 0.196701 | 3_1:+61320265 | Msa0366420:CDS |
| CAGGTTTGGCCATCAGATTC+AGG | 0.232242 | 3_1:+61320070 | Msa0366420:CDS |
| GTTCAAGAGTTTGCATGAAC+TGG | 0.380322 | 3_1:+61320114 | Msa0366420:CDS |
| GATGAAATTAGCACTCTTTG+TGG | 0.382102 | 3_1:+61320001 | Msa0366420:CDS |
| AATGAAATGATGAATGATAT+TGG | 0.442815 | 3_1:-61320245 | None:intergenic |
| ACAATCCTCAAGTACAGGTT+TGG | 0.465441 | 3_1:+61320056 | Msa0366420:CDS |
| TATTCTTGAGGCAAACCATT+GGG | 0.481117 | 3_1:+61320167 | Msa0366420:CDS |
| AGGTTTGGCCATCAGATTCA+GGG | 0.491311 | 3_1:+61320071 | Msa0366420:CDS |
| GGGTTAGAAGTGTGATATCC+AGG | 0.506627 | 3_1:+61320092 | Msa0366420:CDS |
| AAGGAAGGAAACCAGAAAGC+AGG | 0.520416 | 3_1:+61320216 | Msa0366420:CDS |
| CAAATTCTCAGCAATAAAAG+AGG | 0.520681 | 3_1:-61320323 | None:intergenic |
| GGAGGATGACATTCAGAAAG+AGG | 0.520726 | 3_1:+61319760 | Msa0366420:CDS |
| CTATTCTTGAGGCAAACCAT+TGG | 0.534098 | 3_1:+61320166 | Msa0366420:CDS |
| TAAATATCCATTAAATTCTG+TGG | 0.554522 | 3_1:-61320272 | None:intergenic |
| TTGCTCGTAAATTATTGCAC+CGG | 0.562136 | 3_1:-61320032 | None:intergenic |
| GCAAAACAATCCTCAAGTAC+AGG | 0.563776 | 3_1:+61320051 | Msa0366420:CDS |
| CACTATCATGGCTAGAGGGA+AGG | 0.570504 | 3_1:+61319704 | None:intergenic |
| CTGCTCATAGACTTTCCCAA+TGG | 0.579151 | 3_1:-61320182 | None:intergenic |
| TTCATGCAAACTCTTGAACC+TGG | 0.581655 | 3_1:-61320110 | None:intergenic |
| ACTCTTTGTGGAATAGAAGC+CGG | 0.588115 | 3_1:+61320013 | Msa0366420:CDS |
| TCCTCACTATCATGGCTAGA+GGG | 0.594549 | 3_1:+61319700 | None:intergenic |
| GAGGTCGATCAAAAGATGAA+AGG | 0.605953 | 3_1:+61320349 | Msa0366420:CDS |
| CTTCTAACCCCTGAATCTGA+TGG | 0.608216 | 3_1:-61320079 | None:intergenic |
| GATGGCCAAACCTGTACTTG+AGG | 0.609083 | 3_1:-61320061 | None:intergenic |
| ATGAGCAGATGATGAAACAA+AGG | 0.611511 | 3_1:+61320197 | Msa0366420:CDS |
| ACATAACATGTGACTCGAAG+AGG | 0.616371 | 3_1:+61319739 | Msa0366420:CDS |
| ATCCTCACTATCATGGCTAG+AGG | 0.627794 | 3_1:+61319699 | None:intergenic |
| GGTTTGGCCATCAGATTCAG+GGG | 0.628974 | 3_1:+61320072 | Msa0366420:CDS |
| TATTGCTGAGAATTTGAGGG+AGG | 0.639350 | 3_1:+61320330 | Msa0366420:CDS |
| GCAGATGATGAAACAAAGGA+AGG | 0.642572 | 3_1:+61320201 | Msa0366420:CDS |
| TAACATGTGACTCGAAGAGG+AGG | 0.651743 | 3_1:+61319742 | Msa0366420:CDS |
| TGGATCAAGAGCTATTCTTG+AGG | 0.708311 | 3_1:+61320155 | Msa0366420:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAAATTTAGAATTTTACTAT+AGG | + | chr3_1:61319926-61319945 | Msa0366420:intron | 10.0% |
| !!! | ATGGATATATTTTTTTTAAT+AGG | + | chr3_1:61319962-61319981 | Msa0366420:intron | 10.0% |
| !! | TATAGGTTATATATTGTTTA+TGG | + | chr3_1:61319943-61319962 | Msa0366420:intron | 15.0% |
| !! | AATGAAATGATGAATGATAT+TGG | - | chr3_1:61320248-61320267 | None:intergenic | 20.0% |
| !! | TAAATATCCATTAAATTCTG+TGG | - | chr3_1:61320275-61320294 | None:intergenic | 20.0% |
| ! | ATTCATACCACAGAATTTAA+TGG | + | chr3_1:61320265-61320284 | Msa0366420:CDS | 25.0% |
| !! | TTTTATTGCTGAGAATTTGA+GGG | + | chr3_1:61320327-61320346 | Msa0366420:CDS | 25.0% |
| ACATTCAGAAAGAGGAAAAA+TGG | + | chr3_1:61319768-61319787 | Msa0366420:CDS | 30.0% | |
| TATGTATGATATGCAAAGAG+AGG | - | chr3_1:61319804-61319823 | None:intergenic | 30.0% | |
| ACTGGAACAAAGTAAAAAGA+TGG | + | chr3_1:61320132-61320151 | Msa0366420:CDS | 30.0% | |
| CAAATTCTCAGCAATAAAAG+AGG | - | chr3_1:61320326-61320345 | None:intergenic | 30.0% | |
| ! | CTTTTATTGCTGAGAATTTG+AGG | + | chr3_1:61320326-61320345 | Msa0366420:CDS | 30.0% |
| GATGAAATTAGCACTCTTTG+TGG | + | chr3_1:61320001-61320020 | Msa0366420:CDS | 35.0% | |
| TTGCTCGTAAATTATTGCAC+CGG | - | chr3_1:61320035-61320054 | None:intergenic | 35.0% | |
| GGAACAAAGTAAAAAGATGG+TGG | + | chr3_1:61320135-61320154 | Msa0366420:CDS | 35.0% | |
| TATTCTTGAGGCAAACCATT+GGG | + | chr3_1:61320167-61320186 | Msa0366420:CDS | 35.0% | |
| ATGAGCAGATGATGAAACAA+AGG | + | chr3_1:61320197-61320216 | Msa0366420:CDS | 35.0% | |
| ACATAACATGTGACTCGAAG+AGG | + | chr3_1:61319739-61319758 | Msa0366420:CDS | 40.0% | |
| ACTCTTTGTGGAATAGAAGC+CGG | + | chr3_1:61320013-61320032 | Msa0366420:CDS | 40.0% | |
| GCAAAACAATCCTCAAGTAC+AGG | + | chr3_1:61320051-61320070 | Msa0366420:CDS | 40.0% | |
| ACAATCCTCAAGTACAGGTT+TGG | + | chr3_1:61320056-61320075 | Msa0366420:CDS | 40.0% | |
| TTCATGCAAACTCTTGAACC+TGG | - | chr3_1:61320113-61320132 | None:intergenic | 40.0% | |
| GTTCAAGAGTTTGCATGAAC+TGG | + | chr3_1:61320114-61320133 | Msa0366420:CDS | 40.0% | |
| TGGATCAAGAGCTATTCTTG+AGG | + | chr3_1:61320155-61320174 | Msa0366420:CDS | 40.0% | |
| CTATTCTTGAGGCAAACCAT+TGG | + | chr3_1:61320166-61320185 | Msa0366420:CDS | 40.0% | |
| GCAGATGATGAAACAAAGGA+AGG | + | chr3_1:61320201-61320220 | Msa0366420:CDS | 40.0% | |
| ATTGGTCATTTCCTGCTTTC+TGG | - | chr3_1:61320230-61320249 | None:intergenic | 40.0% | |
| TATTGCTGAGAATTTGAGGG+AGG | + | chr3_1:61320330-61320349 | Msa0366420:CDS | 40.0% | |
| GAGGTCGATCAAAAGATGAA+AGG | + | chr3_1:61320349-61320368 | Msa0366420:CDS | 40.0% | |
| TAACATGTGACTCGAAGAGG+AGG | + | chr3_1:61319742-61319761 | Msa0366420:CDS | 45.0% | |
| GGAGGATGACATTCAGAAAG+AGG | + | chr3_1:61319760-61319779 | Msa0366420:CDS | 45.0% | |
| AGGTTTGGCCATCAGATTCA+GGG | + | chr3_1:61320071-61320090 | Msa0366420:CDS | 45.0% | |
| CTTCTAACCCCTGAATCTGA+TGG | - | chr3_1:61320082-61320101 | None:intergenic | 45.0% | |
| ! | GGGTTAGAAGTGTGATATCC+AGG | + | chr3_1:61320092-61320111 | Msa0366420:CDS | 45.0% |
| CTGCTCATAGACTTTCCCAA+TGG | - | chr3_1:61320185-61320204 | None:intergenic | 45.0% | |
| AAGGAAGGAAACCAGAAAGC+AGG | + | chr3_1:61320216-61320235 | Msa0366420:CDS | 45.0% | |
| GATGGCCAAACCTGTACTTG+AGG | - | chr3_1:61320064-61320083 | None:intergenic | 50.0% | |
| CAGGTTTGGCCATCAGATTC+AGG | + | chr3_1:61320070-61320089 | Msa0366420:CDS | 50.0% | |
| GGTTTGGCCATCAGATTCAG+GGG | + | chr3_1:61320072-61320091 | Msa0366420:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 61319711 | 61320390 | 61319711 | ID=Msa0366420;Name=Msa0366420 |
| chr3_1 | mRNA | 61319711 | 61320390 | 61319711 | ID=Msa0366420-mRNA-1;Parent=Msa0366420;Name=Msa0366420-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|0|0|1|1|1|2|0|161 |
| chr3_1 | exon | 61319711 | 61319789 | 61319711 | ID=Msa0366420-mRNA-1:exon:11857;Parent=Msa0366420-mRNA-1 |
| chr3_1 | exon | 61319984 | 61320390 | 61319984 | ID=Msa0366420-mRNA-1:exon:11858;Parent=Msa0366420-mRNA-1 |
| chr3_1 | CDS | 61319711 | 61319789 | 61319711 | ID=Msa0366420-mRNA-1:cds;Parent=Msa0366420-mRNA-1 |
| chr3_1 | CDS | 61319984 | 61320390 | 61319984 | ID=Msa0366420-mRNA-1:cds;Parent=Msa0366420-mRNA-1 |
| Gene Sequence |
| Protein sequence |
