AlfalfaGEDB | Msa0459170

M. sativa cultivar zhongmu-4 / Msa0459170

KEGG: K09260
GO: GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042995 GO:0043076 GO:0043078 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090406 GO:0097159 GO:0120025 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141
PFAM: PF00319.21

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0459170	KEH34477.1	88.820	161	18	0	1	161	1	161	1.86e-100	295

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0459170	sp\|Q9FJK3\|AGL80_ARATH	49.359	156	76	2	1	155	1	154	1.15e-36	131

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0459170	A0A072UY35	88.820	161	18	0	1	161	1	161	8.90e-101	295

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TFs/TRs:

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Gene ID	Type	Classification
Msa0459170	TF	MADS-M-type

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0016570	Msa0459170	0.818347	2.055287e-52	-8.615850e-47
Msa0102070	Msa0459170	0.847840	8.964585e-60	-8.615850e-47
Msa0111510	Msa0459170	0.820007	8.610086e-53	-8.615850e-47
Msa0142220	Msa0459170	0.829868	4.044874e-55	-8.615850e-47
Msa0145750	Msa0459170	0.805786	1.128482e-49	-8.615850e-47
Msa0200000	Msa0459170	0.812271	4.610204e-51	-8.615850e-47
Msa0227480	Msa0459170	0.835131	2.005352e-56	-8.615850e-47
Msa0231000	Msa0459170	0.841786	3.847649e-58	-8.615850e-47
Msa0235140	Msa0459170	0.835682	1.455931e-56	-8.615850e-47
Msa0267000	Msa0459170	0.876651	1.178521e-68	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0459170	MtrunA17_Chr3g0107461	88.820	161	18	0	1	161	1	161	1.71e-104	295
Msa0459170	MtrunA17_Chr4g0031421	78.195	133	29	0	29	161	1	133	5.28e-71	210
Msa0459170	MtrunA17_Chr3g0105791	77.444	133	30	0	29	161	1	133	2.92e-70	208
Msa0459170	MtrunA17_Chr3g0107381	55.484	155	66	2	1	154	1	153	3.30e-55	173
Msa0459170	MtrunA17_Chr3g0110131	49.367	158	79	1	1	158	1	157	5.11e-42	140
Msa0459170	MtrunA17_Chr2g0296861	47.742	155	80	1	1	155	1	154	2.36e-40	133
Msa0459170	MtrunA17_Chr2g0283941	42.500	160	92	0	1	160	1	160	2.77e-40	135
Msa0459170	MtrunA17_Chr4g0014321	38.961	154	94	0	1	154	1	154	2.10e-37	128
Msa0459170	MtrunA17_Chr4g0014131	44.720	161	89	0	1	161	1	161	1.21e-36	126
Msa0459170	MtrunA17_Chr8g0351751	41.772	158	90	1	1	156	1	158	2.05e-36	125

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0459170	AT5G48670.1	49.359	156	76	2	1	155	1	154	1.17e-37	131
Msa0459170	AT3G05860.2	40.789	152	85	2	1	150	1	149	4.33e-30	108
Msa0459170	AT1G65330.1	41.216	148	86	1	3	150	2	148	5.28e-30	110
Msa0459170	AT3G05860.3	52.525	99	47	0	1	99	1	99	1.61e-29	108
Msa0459170	AT3G05860.1	52.525	99	47	0	1	99	1	99	2.13e-29	108
Msa0459170	AT1G65300.1	39.735	151	90	1	5	155	4	153	3.29e-29	108
Msa0459170	AT5G27810.1	53.933	89	41	0	29	117	1	89	2.06e-28	102
Msa0459170	AT5G26650.1	35.948	153	97	1	5	157	3	154	5.09e-24	96.3
Msa0459170	AT5G27960.1	34.641	153	99	1	5	157	3	154	5.70e-23	92.8
Msa0459170	AT1G22590.2	33.125	160	90	2	1	157	1	146	1.22e-21	85.9

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Find 36 sgRNAs with CRISPR-Local

Find 46 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAGGAAGGAAACCAGAAAGC+AGG	0.520416	3_3:-55542763	Msa0459170:CDS
AATGAAATGATGAATGATAT+TGG	0.442815	3_3:+55542734	None:intergenic
ACAATCCTCAAGCCCAGGTT+TGG	0.451431	3_3:-55542923	Msa0459170:CDS
ACATAACATGTGACCCGAAG+AGG	0.618667	3_3:-55543242	Msa0459170:CDS
ACTCTTTGTGGAATAGAAGC+TGG	0.543874	3_3:-55542966	Msa0459170:CDS
AGGTTTGGCCATCAGATTCA+GGG	0.444978	3_3:-55542908	Msa0459170:CDS
ATCCTCACTATCATGGCTAG+AGG	0.659018	3_3:-55543282	None:intergenic
ATGAGCAGTTGATGAAACAA+AGG	0.608842	3_3:-55542782	Msa0459170:CDS
ATTCATACCACAGAATTTAA+TGG	0.196701	3_3:-55542714	Msa0459170:CDS
ATTGGTCATTTCCTGCTTTC+TGG	0.066665	3_3:+55542752	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ACATTCAGAAAGAGGAAAAA+TGG	-	chr3_3:55542668-55542687	Msa0459170:CDS	30.0%
TATGTATGATATGCAAAGAG+AGG	+	chr3_3:55542704-55542723	None:intergenic	30.0%
ACTGGAACAAAGTAAAAAGA+TGG	-	chr3_3:55543034-55543053	Msa0459170:intron	30.0%
CAAATTCTCAGCAATAAAAG+AGG	+	chr3_3:55543228-55543247	None:intergenic	30.0%
GATGAAATTAGCACTCTTTG+TGG	-	chr3_3:55542903-55542922	Msa0459170:CDS	35.0%
GGAACAAAGTAAAAAGATGG+TGG	-	chr3_3:55543037-55543056	Msa0459170:intron	35.0%
GAGGACAAATCATTAAGATC+AGG	+	chr3_3:55543209-55543228	None:intergenic	35.0%
TGAATGTTATCCTCCTCTTC+GGG	+	chr3_3:55542655-55542674	None:intergenic	40.0%
CTGAATGTTATCCTCCTCTT+CGG	+	chr3_3:55542656-55542675	None:intergenic	40.0%
GGAGGATAACATTCAGAAAG+AGG	-	chr3_3:55542660-55542679	Msa0459170:CDS	40.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_3	gene	55542611	55543292	55542611	ID=Msa0459170;Name=Msa0459170
chr3_3	mRNA	55542611	55543292	55542611	ID=Msa0459170-mRNA-1;Parent=Msa0459170;Name=Msa0459170-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0\|0\|0\|1\|1\|1\|2\|0\|161
chr3_3	exon	55543214	55543292	55543214	ID=Msa0459170-mRNA-1:exon:11006;Parent=Msa0459170-mRNA-1
chr3_3	exon	55542611	55543017	55542611	ID=Msa0459170-mRNA-1:exon:11005;Parent=Msa0459170-mRNA-1
chr3_3	CDS	55543214	55543292	55543214	ID=Msa0459170-mRNA-1:cds;Parent=Msa0459170-mRNA-1
chr3_3	CDS	55542611	55543017	55542611	ID=Msa0459170-mRNA-1:cds;Parent=Msa0459170-mRNA-1

Gene Sequence

>Msa0459170

ATGGCTAGAGGTAAGGTGAAACTAGCATACATAACATGTGACCCGAAGAGGAGGATAACATTCAGAAAGAGGAAAAATGGGATTATGAAGAAGATTGATGAAATTAGCACTCTTTGTGGAATAGAAGCTGGTGCAATAATTTACGAGCAAAACAATCCTCAAGCCCAGGTTTGGCCATCAGATTCAGGGGTTAGAAGTGTGATATCCAGGTTCAGGAGTTTGCATGAACTGGAACAAAGTAAAAAGATGGTGGATCAAGAGGTATTCTTGAGGCAAAGCATTGGGAAAGTCTATGAGCAGTTGATGAAACAAAGGAAGGAAACCAGAAAGCAGGAAATGACCAATATCATTCATCATTTCATTCATACCACAGAATTTAATGGATATTTAATGAGCAAACCTGATCTTAATGATTTGTCCTCTTTTATTGCTGAGAATTTGAGGGAGGTCGATCAAAAGATGAAAGGAATGTCAATCGAAGATTGA

Protein sequence

>Msa0459170

MARGKVKLAYITCDPKRRITFRKRKNGIMKKIDEISTLCGIEAGAIIYEQNNPQAQVWPSDSGVRSVISRFRSLHELEQSKKMVDQEVFLRQSIGKVYEQLMKQRKETRKQEMTNIIHHFIHTTEFNGYLMSKPDLNDLSSFIAENLREVDQKMKGMSIED*