Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0506190 | KEH34477.1 | 89.441 | 161 | 17 | 0 | 1 | 161 | 1 | 161 | 1.12e-102 | 301 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0506190 | sp|Q9FJK3|AGL80_ARATH | 48.718 | 156 | 77 | 2 | 1 | 155 | 1 | 154 | 1.07e-36 | 131 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0506190 | A0A072UY35 | 89.441 | 161 | 17 | 0 | 1 | 161 | 1 | 161 | 5.36e-103 | 301 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0506190 | TF | MADS-M-type |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0102070 | Msa0506190 | 0.817550 | 3.111776e-52 | -8.615850e-47 |
| Msa0124100 | Msa0506190 | 0.801657 | 8.118808e-49 | -8.615850e-47 |
| Msa0227480 | Msa0506190 | 0.806338 | 8.634509e-50 | -8.615850e-47 |
| Msa0365500 | Msa0506190 | 0.811015 | 8.649292e-51 | -8.615850e-47 |
| Msa0366420 | Msa0506190 | 0.809060 | 2.280473e-50 | -8.615850e-47 |
| Msa0414410 | Msa0506190 | 0.864374 | 1.273456e-64 | -8.615850e-47 |
| Msa0414420 | Msa0506190 | 0.870022 | 1.996277e-66 | -8.615850e-47 |
| Msa0452900 | Msa0506190 | 0.833918 | 4.046205e-56 | -8.615850e-47 |
| Msa0459160 | Msa0506190 | 0.855789 | 4.982107e-62 | -8.615850e-47 |
| Msa0459170 | Msa0506190 | 0.818558 | 1.841552e-52 | -8.615850e-47 |
| Msa0267000 | Msa0506190 | 0.830012 | 3.732598e-55 | -8.615850e-47 |
| Msa0267010 | Msa0506190 | 0.824793 | 6.657486e-54 | -8.615850e-47 |
| Msa0342240 | Msa0506190 | 0.806944 | 6.430433e-50 | -8.615850e-47 |
| Msa0360510 | Msa0506190 | 0.856659 | 2.769494e-62 | -8.615850e-47 |
| Msa0506190 | Msa0564890 | 0.831869 | 1.307209e-55 | -8.615850e-47 |
| Msa0506190 | Msa0726140 | 0.820899 | 5.374681e-53 | -8.615850e-47 |
| Msa0506190 | Msa0743810 | 0.818122 | 2.310540e-52 | -8.615850e-47 |
| Msa0506190 | Msa0745060 | 0.823448 | 1.377828e-53 | -8.615850e-47 |
| Msa0506190 | Msa0777870 | 0.800236 | 1.584469e-48 | -8.615850e-47 |
| Msa0506190 | Msa0787600 | 0.803573 | 3.268086e-49 | -8.615850e-47 |
| Msa0506190 | Msa0808010 | 0.801684 | 8.016397e-49 | -8.615850e-47 |
| Msa0506190 | Msa0808020 | 0.805766 | 1.138995e-49 | -8.615850e-47 |
| Msa0506190 | Msa0825860 | 0.821083 | 4.875194e-53 | -8.615850e-47 |
| Msa0506190 | Msa0981370 | 0.801780 | 7.660225e-49 | -8.615850e-47 |
| Msa0506190 | Msa1016280 | 0.815688 | 8.131092e-52 | -8.615850e-47 |
| Msa0506190 | Msa1025360 | 0.836205 | 1.072405e-56 | -8.615850e-47 |
| Msa0506190 | Msa1025370 | 0.831791 | 1.366519e-55 | -8.615850e-47 |
| Msa0506190 | Msa1044830 | 0.836666 | 8.186351e-57 | -8.615850e-47 |
| Msa0506190 | Msa1044840 | 0.836989 | 6.773439e-57 | -8.615850e-47 |
| Msa0506190 | Msa1109440 | 0.811819 | 5.784921e-51 | -8.615850e-47 |
| Msa0506190 | Msa1121200 | 0.806833 | 6.788170e-50 | -8.615850e-47 |
| Msa0506190 | Msa1146110 | 0.805882 | 1.076932e-49 | -8.615850e-47 |
| Msa0506190 | Msa1192640 | 0.810347 | 1.205966e-50 | -8.615850e-47 |
| Msa0506190 | Msa1269670 | 0.821876 | 3.197560e-53 | -8.615850e-47 |
| Msa0506190 | Msa1270230 | 0.833337 | 5.652836e-56 | -8.615850e-47 |
| Msa0506190 | Msa1270240 | 0.806186 | 9.297533e-50 | -8.615850e-47 |
| Msa0506190 | Msa1283330 | 0.825494 | 4.547444e-54 | -8.615850e-47 |
| Msa0506190 | Msa1285930 | 0.816798 | 4.592359e-52 | -8.615850e-47 |
| Msa0506190 | Msa1287800 | 0.835549 | 1.572655e-56 | -8.615850e-47 |
| Msa0506190 | Msa1287810 | 0.841021 | 6.117360e-58 | -8.615850e-47 |
| Msa0506190 | Msa1289430 | 0.806351 | 8.581764e-50 | -8.615850e-47 |
| Msa0506190 | Msa1307890 | 0.805114 | 1.560661e-49 | -8.615850e-47 |
| Msa0506190 | Msa1404000 | 0.819557 | 1.090892e-52 | -8.615850e-47 |
| Msa0506190 | Msa1415310 | 0.811024 | 8.610849e-51 | -8.615850e-47 |
| Msa0506190 | Msa1422180 | 0.800569 | 1.355091e-48 | -8.615850e-47 |
| Msa0506190 | Msa1433120 | 0.812102 | 5.019227e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0506190 | MtrunA17_Chr3g0107461 | 89.441 | 161 | 17 | 0 | 1 | 161 | 1 | 161 | 1.03e-106 | 301 |
| Msa0506190 | MtrunA17_Chr4g0031421 | 78.947 | 133 | 28 | 0 | 29 | 161 | 1 | 133 | 3.81e-73 | 216 |
| Msa0506190 | MtrunA17_Chr3g0105791 | 78.195 | 133 | 29 | 0 | 29 | 161 | 1 | 133 | 2.65e-72 | 214 |
| Msa0506190 | MtrunA17_Chr3g0107381 | 54.839 | 155 | 67 | 2 | 1 | 154 | 1 | 153 | 5.22e-55 | 172 |
| Msa0506190 | MtrunA17_Chr3g0110131 | 49.032 | 155 | 78 | 1 | 1 | 155 | 1 | 154 | 2.25e-41 | 138 |
| Msa0506190 | MtrunA17_Chr2g0296861 | 47.097 | 155 | 81 | 1 | 1 | 155 | 1 | 154 | 8.95e-41 | 134 |
| Msa0506190 | MtrunA17_Chr2g0283941 | 42.308 | 156 | 90 | 0 | 5 | 160 | 5 | 160 | 6.43e-40 | 134 |
| Msa0506190 | MtrunA17_Chr5g0432691 | 39.610 | 154 | 92 | 1 | 1 | 154 | 1 | 153 | 1.54e-37 | 126 |
| Msa0506190 | MtrunA17_Chr8g0351751 | 41.509 | 159 | 91 | 1 | 1 | 157 | 1 | 159 | 1.35e-36 | 126 |
| Msa0506190 | MtrunA17_Chr4g0014321 | 37.662 | 154 | 96 | 0 | 1 | 154 | 1 | 154 | 6.85e-36 | 124 |
| Msa0506190 | MtrunA17_Chr3g0107331 | 40.397 | 151 | 89 | 1 | 3 | 153 | 2 | 151 | 1.43e-33 | 116 |
| Msa0506190 | MtrunA17_Chr3g0106421 | 44.697 | 132 | 73 | 0 | 29 | 160 | 1 | 132 | 1.76e-33 | 117 |
| Msa0506190 | MtrunA17_Chr4g0014031 | 42.949 | 156 | 89 | 0 | 1 | 156 | 1 | 156 | 6.01e-33 | 116 |
| Msa0506190 | MtrunA17_Chr4g0014131 | 42.857 | 161 | 92 | 0 | 1 | 161 | 1 | 161 | 7.26e-33 | 116 |
| Msa0506190 | MtrunA17_Chr2g0296831 | 51.282 | 117 | 57 | 0 | 1 | 117 | 1 | 117 | 1.35e-32 | 112 |
| Msa0506190 | MtrunA17_Chr3g0106501 | 44.961 | 129 | 71 | 0 | 29 | 157 | 1 | 129 | 2.46e-31 | 110 |
| Msa0506190 | MtrunA17_Chr4g0014121 | 39.103 | 156 | 95 | 0 | 1 | 156 | 29 | 184 | 3.51e-30 | 108 |
| Msa0506190 | MtrunA17_Chr4g0013041 | 35.714 | 154 | 97 | 1 | 1 | 154 | 1 | 152 | 1.02e-29 | 107 |
| Msa0506190 | MtrunA17_Chr5g0420351 | 37.580 | 157 | 96 | 2 | 1 | 157 | 1 | 155 | 1.62e-29 | 105 |
| Msa0506190 | MtrunA17_Chr3g0107351 | 36.129 | 155 | 98 | 1 | 3 | 157 | 2 | 155 | 1.73e-29 | 105 |
| Msa0506190 | MtrunA17_Chr3g0107341 | 36.129 | 155 | 98 | 1 | 3 | 157 | 2 | 155 | 1.83e-27 | 100 |
| Msa0506190 | MtrunA17_Chr3g0107361 | 36.129 | 155 | 98 | 1 | 3 | 157 | 2 | 155 | 1.95e-27 | 100 |
| Msa0506190 | MtrunA17_Chr1g0188681 | 38.750 | 160 | 90 | 4 | 1 | 157 | 1 | 155 | 3.01e-27 | 100 |
| Msa0506190 | MtrunA17_Chr1g0197461 | 34.194 | 155 | 100 | 2 | 3 | 157 | 2 | 154 | 1.45e-26 | 98.2 |
| Msa0506190 | MtrunA17_Chr4g0012761 | 36.943 | 157 | 97 | 2 | 1 | 157 | 1 | 155 | 1.37e-24 | 93.2 |
| Msa0506190 | MtrunA17_Chr1g0188661 | 36.709 | 158 | 96 | 3 | 1 | 157 | 1 | 155 | 1.47e-24 | 93.2 |
| Msa0506190 | MtrunA17_Chr1g0197261 | 32.278 | 158 | 103 | 3 | 1 | 157 | 1 | 155 | 2.54e-23 | 89.7 |
| Msa0506190 | MtrunA17_Chr7g0218151 | 35.032 | 157 | 100 | 2 | 1 | 157 | 1 | 155 | 5.93e-23 | 89.0 |
| Msa0506190 | MtrunA17_Chr1g0188651 | 35.404 | 161 | 100 | 2 | 1 | 161 | 1 | 157 | 1.62e-22 | 87.8 |
| Msa0506190 | MtrunA17_Chr1g0197321 | 32.075 | 159 | 103 | 3 | 1 | 157 | 1 | 156 | 2.41e-22 | 87.4 |
| Msa0506190 | MtrunA17_Chr1g0193311 | 35.443 | 158 | 98 | 3 | 1 | 157 | 1 | 155 | 2.88e-22 | 87.0 |
| Msa0506190 | MtrunA17_Chr4g0008701 | 28.148 | 135 | 93 | 1 | 16 | 150 | 19 | 149 | 5.33e-14 | 68.6 |
| Msa0506190 | MtrunA17_Chr7g0267601 | 28.070 | 114 | 82 | 0 | 5 | 118 | 8 | 121 | 1.18e-12 | 64.7 |
| Msa0506190 | MtrunA17_Chr3g0128721 | 26.056 | 142 | 96 | 2 | 16 | 153 | 19 | 155 | 5.59e-12 | 62.8 |
| Msa0506190 | MtrunA17_Chr6g0457851 | 29.204 | 113 | 73 | 3 | 1 | 107 | 11 | 122 | 1.09e-11 | 61.6 |
| Msa0506190 | MtrunA17_Chr1g0212151 | 28.448 | 116 | 76 | 3 | 1 | 110 | 1 | 115 | 2.86e-11 | 60.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0506190 | AT5G48670.1 | 48.718 | 156 | 77 | 2 | 1 | 155 | 1 | 154 | 1.08e-37 | 131 |
| Msa0506190 | AT3G05860.2 | 46.281 | 121 | 61 | 1 | 1 | 117 | 1 | 121 | 4.47e-30 | 108 |
| Msa0506190 | AT3G05860.3 | 46.281 | 121 | 61 | 1 | 1 | 117 | 1 | 121 | 6.78e-30 | 109 |
| Msa0506190 | AT3G05860.1 | 46.281 | 121 | 61 | 1 | 1 | 117 | 1 | 121 | 1.15e-29 | 109 |
| Msa0506190 | AT1G65330.1 | 40.541 | 148 | 87 | 1 | 3 | 150 | 2 | 148 | 2.19e-29 | 108 |
| Msa0506190 | AT1G65300.1 | 39.490 | 157 | 93 | 2 | 5 | 161 | 4 | 158 | 2.57e-29 | 108 |
| Msa0506190 | AT5G27810.1 | 52.809 | 89 | 42 | 0 | 29 | 117 | 1 | 89 | 1.64e-28 | 102 |
| Msa0506190 | AT5G26650.1 | 35.948 | 153 | 97 | 1 | 5 | 157 | 3 | 154 | 5.45e-25 | 99.0 |
| Msa0506190 | AT5G27960.1 | 34.641 | 153 | 99 | 1 | 5 | 157 | 3 | 154 | 8.74e-24 | 95.1 |
| Msa0506190 | AT1G22590.2 | 33.125 | 160 | 90 | 2 | 1 | 157 | 1 | 146 | 8.47e-23 | 89.0 |
| Msa0506190 | AT1G31640.1 | 38.994 | 159 | 83 | 4 | 3 | 155 | 2 | 152 | 1.75e-22 | 92.8 |
| Msa0506190 | AT1G31630.1 | 35.185 | 162 | 95 | 5 | 3 | 161 | 2 | 156 | 1.84e-22 | 91.7 |
| Msa0506190 | AT2G28700.1 | 32.667 | 150 | 100 | 1 | 1 | 150 | 1 | 149 | 8.16e-21 | 87.0 |
| Msa0506190 | AT5G26630.1 | 33.548 | 155 | 102 | 1 | 1 | 155 | 1 | 154 | 2.22e-20 | 84.0 |
| Msa0506190 | AT5G06500.1 | 33.333 | 147 | 88 | 3 | 1 | 147 | 1 | 137 | 3.96e-18 | 78.6 |
| Msa0506190 | AT2G40210.1 | 33.663 | 101 | 67 | 0 | 1 | 101 | 1 | 101 | 1.03e-13 | 67.8 |
| Msa0506190 | AT5G26580.1 | 36.634 | 101 | 50 | 1 | 1 | 101 | 1 | 87 | 3.91e-13 | 66.2 |
| Msa0506190 | AT3G57230.1 | 29.012 | 162 | 100 | 4 | 1 | 161 | 1 | 148 | 1.07e-12 | 63.9 |
| Msa0506190 | AT3G57230.4 | 29.012 | 162 | 100 | 4 | 1 | 161 | 1 | 148 | 1.07e-12 | 63.9 |
| Msa0506190 | AT3G57230.2 | 29.825 | 114 | 76 | 2 | 1 | 113 | 1 | 111 | 3.04e-11 | 58.5 |
Find 36 sgRNAs with CRISPR-Local
Find 47 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTGGTCATTTCCTGCTTTC+TGG | 0.066665 | 3_4:+52399367 | None:intergenic |
| ATTCATACCACAGAATTTAA+TGG | 0.196701 | 3_4:-52399329 | Msa0506190:CDS |
| CAGGTTTGGCCATCAGATTC+AGG | 0.280803 | 3_4:-52399524 | Msa0506190:CDS |
| CTGAATGTTATCCTCCTCTT+CGG | 0.350265 | 3_4:+52399839 | None:intergenic |
| GTTCAGGAGTTTGCCTGGAC+TGG | 0.382826 | 3_4:-52399480 | Msa0506190:CDS |
| CTGAATCTGATGGCCAAACC+TGG | 0.394292 | 3_4:+52399525 | None:intergenic |
| TGAATGTTATCCTCCTCTTC+GGG | 0.395416 | 3_4:+52399840 | None:intergenic |
| GAAGTGTGATATCCAGGTTC+AGG | 0.406864 | 3_4:-52399496 | Msa0506190:CDS |
| GATGAAATTAGCACTCTTTG+CGG | 0.413383 | 3_4:-52399593 | Msa0506190:CDS |
| AATGAAATGATGAATGATAT+TGG | 0.442815 | 3_4:+52399349 | None:intergenic |
| TCCAGGTTCAGGAGTTTGCC+TGG | 0.447666 | 3_4:-52399485 | Msa0506190:CDS |
| ACAATCCTCAAGCCCAGGTT+TGG | 0.451431 | 3_4:-52399538 | Msa0506190:CDS |
| TATTCTTGAGGCAAAGCATT+GGG | 0.452810 | 3_4:-52399427 | Msa0506190:CDS |
| GAGGACAAATCATTAAGATC+AGG | 0.474701 | 3_4:+52399290 | None:intergenic |
| GTGTTAGAAGTGTGATATCC+AGG | 0.495852 | 3_4:-52399502 | Msa0506190:CDS |
| CACTATCATGGCTAGAGGTA+AGG | 0.508320 | 3_4:-52399888 | None:intergenic |
| TCCAGGCAAACTCCTGAACC+TGG | 0.517673 | 3_4:+52399484 | None:intergenic |
| AAGGAAGGAAACCAGAAAGC+AGG | 0.520416 | 3_4:-52399378 | Msa0506190:CDS |
| CAAATTCTCAGCAATAAAAG+AGG | 0.520681 | 3_4:+52399271 | None:intergenic |
| GGAGGATAACATTCAGAAAG+AGG | 0.525464 | 3_4:-52399832 | Msa0506190:CDS |
| TAAATATCCATTAAATTCTG+TGG | 0.554522 | 3_4:+52399322 | None:intergenic |
| GTATTCTTGAGGCAAAGCAT+TGG | 0.555152 | 3_4:-52399428 | Msa0506190:CDS |
| GATGGCCAAACCTGGGCTTG+AGG | 0.558655 | 3_4:+52399533 | None:intergenic |
| TTGCTCGTAAATTATTGCAC+CGG | 0.562136 | 3_4:+52399562 | None:intergenic |
| GCAAAACAATCCTCAAGCCC+AGG | 0.573782 | 3_4:-52399543 | Msa0506190:CDS |
| TGAATCTGATGGCCAAACCT+GGG | 0.601638 | 3_4:+52399526 | None:intergenic |
| GAGGTCGATCAAAAGATGAA+AGG | 0.605953 | 3_4:-52399245 | Msa0506190:CDS |
| ATGAGCAGATGATGAAACAA+AGG | 0.611511 | 3_4:-52399397 | Msa0506190:CDS |
| ACTCTTTGCGGAATAGAAGC+CGG | 0.612299 | 3_4:-52399581 | Msa0506190:CDS |
| CTTCTAACACCTGAATCTGA+TGG | 0.613550 | 3_4:+52399515 | None:intergenic |
| ACATAACATGTGACCCGAAG+AGG | 0.618667 | 3_4:-52399853 | Msa0506190:CDS |
| TATTGCTGAGAATTTGAGGG+AGG | 0.639350 | 3_4:-52399264 | Msa0506190:CDS |
| GCAGATGATGAAACAAAGGA+AGG | 0.642572 | 3_4:-52399393 | Msa0506190:CDS |
| ATCCTCACTATCATGGCTAG+AGG | 0.659018 | 3_4:-52399893 | None:intergenic |
| TAACATGTGACCCGAAGAGG+AGG | 0.659370 | 3_4:-52399850 | Msa0506190:CDS |
| TGGATCAAGAGGTATTCTTG+AGG | 0.709854 | 3_4:-52399439 | Msa0506190:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTATGGATTTTTTTTATTA+GGG | - | chr3_4:52399476-52399495 | Msa0506190:CDS | 10.0% |
| !!! | TAAATTTGGAATTTTACTAT+AGG | - | chr3_4:52399443-52399462 | Msa0506190:CDS | 15.0% |
| !! | TATAGGTTATATATTGTTTA+TGG | - | chr3_4:52399460-52399479 | Msa0506190:CDS | 15.0% |
| !!! | GTTTATGGATTTTTTTTATT+AGG | - | chr3_4:52399475-52399494 | Msa0506190:CDS | 15.0% |
| !! | AATGAAATGATGAATGATAT+TGG | + | chr3_4:52399761-52399780 | None:intergenic | 20.0% |
| !! | TAAATATCCATTAAATTCTG+TGG | + | chr3_4:52399788-52399807 | None:intergenic | 20.0% |
| ! | ATTCATACCACAGAATTTAA+TGG | - | chr3_4:52399778-52399797 | Msa0506190:intron | 25.0% |
| !! | TTTTATTGCTGAGAATTTGA+GGG | - | chr3_4:52399840-52399859 | Msa0506190:CDS | 25.0% |
| ACATTCAGAAAGAGGAAAAA+TGG | - | chr3_4:52399283-52399302 | Msa0506190:CDS | 30.0% | |
| TATGTATGATATGCAAAGAG+AGG | + | chr3_4:52399319-52399338 | None:intergenic | 30.0% | |
| ACTGGAACAAAGTAAAAAGA+TGG | - | chr3_4:52399645-52399664 | Msa0506190:intron | 30.0% | |
| CAAATTCTCAGCAATAAAAG+AGG | + | chr3_4:52399839-52399858 | None:intergenic | 30.0% | |
| ! | CTTTTATTGCTGAGAATTTG+AGG | - | chr3_4:52399839-52399858 | Msa0506190:CDS | 30.0% |
| GATGAAATTAGCACTCTTTG+CGG | - | chr3_4:52399514-52399533 | Msa0506190:CDS | 35.0% | |
| TTGCTCGTAAATTATTGCAC+CGG | + | chr3_4:52399548-52399567 | None:intergenic | 35.0% | |
| ! | TTTTTACTTTGTTCCAGTCC+AGG | + | chr3_4:52399643-52399662 | None:intergenic | 35.0% |
| GGAACAAAGTAAAAAGATGG+TGG | - | chr3_4:52399648-52399667 | Msa0506190:intron | 35.0% | |
| !! | TAAAAAGATGGTGGATCAAG+AGG | - | chr3_4:52399657-52399676 | Msa0506190:intron | 35.0% |
| ! | TATTCTTGAGGCAAAGCATT+GGG | - | chr3_4:52399680-52399699 | Msa0506190:intron | 35.0% |
| ATGAGCAGATGATGAAACAA+AGG | - | chr3_4:52399710-52399729 | Msa0506190:intron | 35.0% | |
| GAGGACAAATCATTAAGATC+AGG | + | chr3_4:52399820-52399839 | None:intergenic | 35.0% | |
| TGAATGTTATCCTCCTCTTC+GGG | + | chr3_4:52399270-52399289 | None:intergenic | 40.0% | |
| CTGAATGTTATCCTCCTCTT+CGG | + | chr3_4:52399271-52399290 | None:intergenic | 40.0% | |
| GGAGGATAACATTCAGAAAG+AGG | - | chr3_4:52399275-52399294 | Msa0506190:CDS | 40.0% | |
| CTTCTAACACCTGAATCTGA+TGG | + | chr3_4:52399595-52399614 | None:intergenic | 40.0% | |
| ! | GTGTTAGAAGTGTGATATCC+AGG | - | chr3_4:52399605-52399624 | Msa0506190:CDS | 40.0% |
| !! | TGGATCAAGAGGTATTCTTG+AGG | - | chr3_4:52399668-52399687 | Msa0506190:intron | 40.0% |
| GTATTCTTGAGGCAAAGCAT+TGG | - | chr3_4:52399679-52399698 | Msa0506190:intron | 40.0% | |
| GCAGATGATGAAACAAAGGA+AGG | - | chr3_4:52399714-52399733 | Msa0506190:intron | 40.0% | |
| ATTGGTCATTTCCTGCTTTC+TGG | + | chr3_4:52399743-52399762 | None:intergenic | 40.0% | |
| TATTGCTGAGAATTTGAGGG+AGG | - | chr3_4:52399843-52399862 | Msa0506190:CDS | 40.0% | |
| GAGGTCGATCAAAAGATGAA+AGG | - | chr3_4:52399862-52399881 | Msa0506190:CDS | 40.0% | |
| ACATAACATGTGACCCGAAG+AGG | - | chr3_4:52399254-52399273 | Msa0506190:CDS | 45.0% | |
| ACTCTTTGCGGAATAGAAGC+CGG | - | chr3_4:52399526-52399545 | Msa0506190:CDS | 45.0% | |
| TGAATCTGATGGCCAAACCT+GGG | + | chr3_4:52399584-52399603 | None:intergenic | 45.0% | |
| GAAGTGTGATATCCAGGTTC+AGG | - | chr3_4:52399611-52399630 | Msa0506190:CDS | 45.0% | |
| AAGGAAGGAAACCAGAAAGC+AGG | - | chr3_4:52399729-52399748 | Msa0506190:intron | 45.0% | |
| !!! | TAACTTTTATTTAATAAATT+TGG | - | chr3_4:52399429-52399448 | Msa0506190:CDS | 5.0% |
| TAACATGTGACCCGAAGAGG+AGG | - | chr3_4:52399257-52399276 | Msa0506190:CDS | 50.0% | |
| GCAAAACAATCCTCAAGCCC+AGG | - | chr3_4:52399564-52399583 | Msa0506190:CDS | 50.0% | |
| ACAATCCTCAAGCCCAGGTT+TGG | - | chr3_4:52399569-52399588 | Msa0506190:CDS | 50.0% | |
| CTGAATCTGATGGCCAAACC+TGG | + | chr3_4:52399585-52399604 | None:intergenic | 50.0% | |
| CAGGTTTGGCCATCAGATTC+AGG | - | chr3_4:52399583-52399602 | Msa0506190:CDS | 50.0% | |
| TCCAGGTTCAGGAGTTTGCC+TGG | - | chr3_4:52399622-52399641 | Msa0506190:intron | 55.0% | |
| TCCAGGCAAACTCCTGAACC+TGG | + | chr3_4:52399626-52399645 | None:intergenic | 55.0% | |
| GTTCAGGAGTTTGCCTGGAC+TGG | - | chr3_4:52399627-52399646 | Msa0506190:intron | 55.0% | |
| GATGGCCAAACCTGGGCTTG+AGG | + | chr3_4:52399577-52399596 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 52399226 | 52399903 | 52399226 | ID=Msa0506190;Name=Msa0506190 |
| chr3_4 | mRNA | 52399226 | 52399903 | 52399226 | ID=Msa0506190-mRNA-1;Parent=Msa0506190;Name=Msa0506190-mRNA-1;_AED=0.38;_eAED=0.38;_QI=0|0|0|1|1|1|2|0|161 |
| chr3_4 | exon | 52399825 | 52399903 | 52399825 | ID=Msa0506190-mRNA-1:exon:11434;Parent=Msa0506190-mRNA-1 |
| chr3_4 | exon | 52399226 | 52399632 | 52399226 | ID=Msa0506190-mRNA-1:exon:11433;Parent=Msa0506190-mRNA-1 |
| chr3_4 | CDS | 52399825 | 52399903 | 52399825 | ID=Msa0506190-mRNA-1:cds;Parent=Msa0506190-mRNA-1 |
| chr3_4 | CDS | 52399226 | 52399632 | 52399226 | ID=Msa0506190-mRNA-1:cds;Parent=Msa0506190-mRNA-1 |
| Gene Sequence |
| Protein sequence |
