Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0176260 | XP_013469370.1 | 98.753 | 481 | 6 | 0 | 1 | 481 | 1 | 481 | 0.0 | 965 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0176260 | sp|F4HW02|GAT1_ARATH | 52.715 | 442 | 207 | 1 | 41 | 480 | 9 | 450 | 1.45e-172 | 496 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0176260 | A0A072VPU6 | 98.753 | 481 | 6 | 0 | 1 | 481 | 1 | 481 | 0.0 | 965 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001830 | Msa0176260 | 0.836109 | 1.134471e-56 | -8.615850e-47 |
| Msa0004480 | Msa0176260 | 0.828481 | 8.779819e-55 | -8.615850e-47 |
| Msa0011050 | Msa0176260 | 0.848012 | 8.038797e-60 | -8.615850e-47 |
| Msa0026630 | Msa0176260 | 0.809855 | 1.539294e-50 | -8.615850e-47 |
| Msa0043850 | Msa0176260 | 0.823060 | 1.697656e-53 | -8.615850e-47 |
| Msa0048390 | Msa0176260 | 0.846074 | 2.729233e-59 | -8.615850e-47 |
| Msa0059900 | Msa0176260 | 0.824956 | 6.093270e-54 | -8.615850e-47 |
| Msa0060070 | Msa0176260 | 0.849707 | 2.720537e-60 | -8.615850e-47 |
| Msa0061220 | Msa0176260 | 0.831984 | 1.224395e-55 | -8.615850e-47 |
| Msa0071480 | Msa0176260 | 0.837688 | 4.483469e-57 | -8.615850e-47 |
| Msa0090380 | Msa0176260 | 0.846917 | 1.607088e-59 | -8.615850e-47 |
| Msa0090510 | Msa0176260 | 0.815134 | 1.080279e-51 | -8.615850e-47 |
| Msa0094710 | Msa0176260 | 0.801000 | 1.106886e-48 | -8.615850e-47 |
| Msa0104810 | Msa0176260 | 0.802409 | 5.686815e-49 | -8.615850e-47 |
| Msa0119440 | Msa0176260 | 0.810882 | 9.242474e-51 | -8.615850e-47 |
| Msa0136630 | Msa0176260 | 0.854868 | 9.236811e-62 | -8.615850e-47 |
| Msa0137860 | Msa0176260 | 0.841793 | 3.831337e-58 | -8.615850e-47 |
| Msa0137980 | Msa0176260 | 0.817854 | 2.656796e-52 | -8.615850e-47 |
| Msa0138900 | Msa0176260 | 0.854111 | 1.530001e-61 | -8.615850e-47 |
| Msa0139670 | Msa0176260 | 0.804230 | 2.386411e-49 | -8.615850e-47 |
| Msa0151220 | Msa0176260 | 0.850959 | 1.211336e-60 | -8.615850e-47 |
| Msa0162690 | Msa0176260 | 0.826640 | 2.427662e-54 | -8.615850e-47 |
| Msa0176260 | Msa0183910 | 0.813961 | 1.963405e-51 | -8.615850e-47 |
| Msa0176260 | Msa0187310 | 0.824982 | 6.008927e-54 | -8.615850e-47 |
| Msa0176260 | Msa0196880 | 0.805466 | 1.317028e-49 | -8.615850e-47 |
| Msa0176260 | Msa0213430 | 0.851931 | 6.435661e-61 | -8.615850e-47 |
| Msa0176260 | Msa0220750 | 0.803337 | 3.657412e-49 | -8.615850e-47 |
| Msa0176260 | Msa0224130 | 0.841322 | 5.097860e-58 | -8.615850e-47 |
| Msa0176260 | Msa0225850 | 0.807240 | 5.566167e-50 | -8.615850e-47 |
| Msa0176260 | Msa0227360 | 0.825066 | 5.740323e-54 | -8.615850e-47 |
| Msa0176260 | Msa0233970 | 0.820470 | 6.742842e-53 | -8.615850e-47 |
| Msa0176260 | Msa0259440 | 0.825854 | 3.736014e-54 | -8.615850e-47 |
| Msa0176260 | Msa0259580 | 0.818535 | 1.863176e-52 | -8.615850e-47 |
| Msa0176260 | Msa0260520 | 0.812453 | 4.206626e-51 | -8.615850e-47 |
| Msa0176260 | Msa0264680 | 0.845383 | 4.203503e-59 | -8.615850e-47 |
| Msa0176260 | Msa0265270 | 0.835784 | 1.371552e-56 | -8.615850e-47 |
| Msa0176260 | Msa0272400 | 0.822304 | 2.544506e-53 | -8.615850e-47 |
| Msa0176260 | Msa0276430 | 0.848793 | 4.886252e-60 | -8.615850e-47 |
| Msa0176260 | Msa0279430 | 0.826871 | 2.138021e-54 | -8.615850e-47 |
| Msa0176260 | Msa0302730 | 0.855695 | 5.308784e-62 | -8.615850e-47 |
| Msa0176260 | Msa0302840 | 0.841258 | 5.300118e-58 | -8.615850e-47 |
| Msa0176260 | Msa0305620 | 0.808765 | 2.637422e-50 | -8.615850e-47 |
| Msa0176260 | Msa0312590 | 0.815711 | 8.036371e-52 | -8.615850e-47 |
| Msa0176260 | Msa0316470 | 0.847226 | 1.321867e-59 | -8.615850e-47 |
| Msa0176260 | Msa0319020 | 0.812898 | 3.362070e-51 | -8.615850e-47 |
| Msa0176260 | Msa0364790 | 0.848262 | 6.856763e-60 | -8.615850e-47 |
| Msa0176260 | Msa0365950 | 0.837417 | 5.263914e-57 | -8.615850e-47 |
| Msa0176260 | Msa0372460 | 0.800618 | 1.324367e-48 | -8.615850e-47 |
| Msa0176260 | Msa0380600 | 0.858266 | 9.266921e-63 | -8.615850e-47 |
| Msa0176260 | Msa0412260 | 0.834831 | 2.387744e-56 | -8.615850e-47 |
| Msa0176260 | Msa0430240 | 0.856392 | 3.318116e-62 | -8.615850e-47 |
| Msa0176260 | Msa0456770 | 0.838380 | 2.976489e-57 | -8.615850e-47 |
| Msa0176260 | Msa0484800 | 0.832425 | 9.524372e-56 | -8.615850e-47 |
| Msa0176260 | Msa0500400 | 0.822455 | 2.347470e-53 | -8.615850e-47 |
| Msa0176260 | Msa0534870 | 0.841457 | 4.698566e-58 | -8.615850e-47 |
| Msa0176260 | Msa0545050 | 0.840422 | 8.776763e-58 | -8.615850e-47 |
| Msa0176260 | Msa0558390 | 0.804689 | 1.914938e-49 | -8.615850e-47 |
| Msa0176260 | Msa0574930 | 0.805800 | 1.120836e-49 | -8.615850e-47 |
| Msa0176260 | Msa0579670 | 0.822404 | 2.412746e-53 | -8.615850e-47 |
| Msa0176260 | Msa0584580 | 0.850481 | 1.651638e-60 | -8.615850e-47 |
| Msa0176260 | Msa0584600 | 0.847845 | 8.937654e-60 | -8.615850e-47 |
| Msa0176260 | Msa0590390 | 0.805688 | 1.183070e-49 | -8.615850e-47 |
| Msa0176260 | Msa0600590 | 0.842884 | 1.968731e-58 | -8.615850e-47 |
| Msa0176260 | Msa0613150 | 0.801434 | 9.021894e-49 | -8.615850e-47 |
| Msa0176260 | Msa0628810 | 0.810501 | 1.116930e-50 | -8.615850e-47 |
| Msa0176260 | Msa0631320 | 0.846266 | 2.419428e-59 | -8.615850e-47 |
| Msa0176260 | Msa0635270 | 0.828219 | 1.015035e-54 | -8.615850e-47 |
| Msa0176260 | Msa0641130 | 0.832302 | 1.021457e-55 | -8.615850e-47 |
| Msa0176260 | Msa0679670 | 0.802580 | 5.244753e-49 | -8.615850e-47 |
| Msa0176260 | Msa0696100 | 0.810626 | 1.049555e-50 | -8.615850e-47 |
| Msa0176260 | Msa0698460 | 0.803731 | 3.031483e-49 | -8.615850e-47 |
| Msa0176260 | Msa0709120 | 0.804570 | 2.027117e-49 | -8.615850e-47 |
| Msa0176260 | Msa0734940 | 0.811043 | 8.528519e-51 | -8.615850e-47 |
| Msa0176260 | Msa0743870 | 0.835110 | 2.030306e-56 | -8.615850e-47 |
| Msa0176260 | Msa0744640 | 0.801405 | 9.143294e-49 | -8.615850e-47 |
| Msa0176260 | Msa0764070 | 0.802566 | 5.280354e-49 | -8.615850e-47 |
| Msa0176260 | Msa0769720 | 0.819718 | 1.002625e-52 | -8.615850e-47 |
| Msa0176260 | Msa0775160 | 0.815525 | 8.842249e-52 | -8.615850e-47 |
| Msa0176260 | Msa0787790 | 0.845899 | 3.045014e-59 | -8.615850e-47 |
| Msa0176260 | Msa0812530 | 0.846183 | 2.548182e-59 | -8.615850e-47 |
| Msa0176260 | Msa0812950 | 0.828660 | 7.945956e-55 | -8.615850e-47 |
| Msa0176260 | Msa0824930 | 0.802350 | 5.848296e-49 | -8.615850e-47 |
| Msa0176260 | Msa0828200 | 0.820664 | 6.086533e-53 | -8.615850e-47 |
| Msa0176260 | Msa0841730 | 0.800422 | 1.452074e-48 | -8.615850e-47 |
| Msa0176260 | Msa0852790 | 0.837462 | 5.124237e-57 | -8.615850e-47 |
| Msa0176260 | Msa0853440 | 0.813885 | 2.040336e-51 | -8.615850e-47 |
| Msa0176260 | Msa0863990 | 0.846265 | 2.421802e-59 | -8.615850e-47 |
| Msa0176260 | Msa0870510 | 0.809205 | 2.123356e-50 | -8.615850e-47 |
| Msa0176260 | Msa0930740 | 0.814226 | 1.716495e-51 | -8.615850e-47 |
| Msa0176260 | Msa0945130 | 0.862961 | 3.495829e-64 | -8.615850e-47 |
| Msa0176260 | Msa0968050 | 0.803743 | 3.012711e-49 | -8.615850e-47 |
| Msa0176260 | Msa0994910 | 0.808541 | 2.944807e-50 | -8.615850e-47 |
| Msa0176260 | Msa1011250 | 0.803750 | 3.002679e-49 | -8.615850e-47 |
| Msa0176260 | Msa1013070 | 0.800689 | 1.281090e-48 | -8.615850e-47 |
| Msa0176260 | Msa1015880 | 0.810469 | 1.134915e-50 | -8.615850e-47 |
| Msa0176260 | Msa1016960 | 0.824484 | 7.873166e-54 | -8.615850e-47 |
| Msa0176260 | Msa1023310 | 0.800355 | 1.498542e-48 | -8.615850e-47 |
| Msa0176260 | Msa1043120 | 0.810116 | 1.352579e-50 | -8.615850e-47 |
| Msa0176260 | Msa1058200 | 0.827643 | 1.396632e-54 | -8.615850e-47 |
| Msa0176260 | Msa1059670 | 0.816528 | 5.279107e-52 | -8.615850e-47 |
| Msa0176260 | Msa1062040 | 0.836471 | 9.178387e-57 | -8.615850e-47 |
| Msa0176260 | Msa1070540 | 0.820265 | 7.516915e-53 | -8.615850e-47 |
| Msa0176260 | Msa1089190 | 0.831862 | 1.312195e-55 | -8.615850e-47 |
| Msa0176260 | Msa1101240 | 0.816977 | 4.187772e-52 | -8.615850e-47 |
| Msa0176260 | Msa1104650 | 0.805737 | 1.155294e-49 | -8.615850e-47 |
| Msa0176260 | Msa1107200 | 0.838848 | 2.252922e-57 | -8.615850e-47 |
| Msa0176260 | Msa1109810 | 0.823314 | 1.481044e-53 | -8.615850e-47 |
| Msa0176260 | Msa1113100 | 0.802518 | 5.401191e-49 | -8.615850e-47 |
| Msa0176260 | Msa1131790 | 0.838390 | 2.959698e-57 | -8.615850e-47 |
| Msa0176260 | Msa1150780 | 0.832545 | 8.890851e-56 | -8.615850e-47 |
| Msa0176260 | Msa1180720 | 0.814368 | 1.596602e-51 | -8.615850e-47 |
| Msa0176260 | Msa1183140 | 0.848524 | 5.801879e-60 | -8.615850e-47 |
| Msa0176260 | Msa1208990 | 0.806660 | 7.385190e-50 | -8.615850e-47 |
| Msa0176260 | Msa1214170 | 0.815879 | 7.371920e-52 | -8.615850e-47 |
| Msa0176260 | Msa1218160 | 0.860811 | 1.592167e-63 | -8.615850e-47 |
| Msa0176260 | Msa1225580 | 0.852665 | 3.978084e-61 | -8.615850e-47 |
| Msa0176260 | Msa1229480 | 0.843822 | 1.105888e-58 | -8.615850e-47 |
| Msa0176260 | Msa1231190 | 0.809208 | 2.119729e-50 | -8.615850e-47 |
| Msa0176260 | Msa1231710 | 0.804395 | 2.204851e-49 | -8.615850e-47 |
| Msa0176260 | Msa1238680 | 0.805507 | 1.290939e-49 | -8.615850e-47 |
| Msa0176260 | Msa1246780 | 0.846037 | 2.792806e-59 | -8.615850e-47 |
| Msa0176260 | Msa1246790 | 0.814964 | 1.177947e-51 | -8.615850e-47 |
| Msa0176260 | Msa1252000 | 0.811613 | 6.412492e-51 | -8.615850e-47 |
| Msa0176260 | Msa1259860 | 0.812958 | 3.261615e-51 | -8.615850e-47 |
| Msa0176260 | Msa1260680 | 0.849059 | 4.122689e-60 | -8.615850e-47 |
| Msa0176260 | Msa1286210 | 0.869693 | 2.556402e-66 | -8.615850e-47 |
| Msa0176260 | Msa1286220 | 0.822609 | 2.162026e-53 | -8.615850e-47 |
| Msa0176260 | Msa1309760 | 0.839348 | 1.671865e-57 | -8.615850e-47 |
| Msa0176260 | Msa1312440 | 0.832863 | 7.413606e-56 | -8.615850e-47 |
| Msa0176260 | Msa1355510 | 0.844381 | 7.829337e-59 | -8.615850e-47 |
| Msa0176260 | Msa1360020 | 0.806861 | 6.695556e-50 | -8.615850e-47 |
| Msa0176260 | Msa1364080 | 0.832168 | 1.102499e-55 | -8.615850e-47 |
| Msa0176260 | Msa1369920 | -0.823359 | 1.445016e-53 | -8.615850e-47 |
| Msa0176260 | Msa1386000 | 0.821837 | 3.264565e-53 | -8.615850e-47 |
| Msa0176260 | Msa1397390 | 0.819998 | 8.652244e-53 | -8.615850e-47 |
| Msa0176260 | Msa1407760 | 0.807517 | 4.864422e-50 | -8.615850e-47 |
| Msa0176260 | Msa1420940 | 0.817611 | 3.014413e-52 | -8.615850e-47 |
| Msa0176260 | Msa1421210 | 0.810693 | 1.015458e-50 | -8.615850e-47 |
| Msa0176260 | Msa1430130 | 0.811256 | 7.666678e-51 | -8.615850e-47 |
| Msa0176260 | Msa1433410 | 0.850553 | 1.576397e-60 | -8.615850e-47 |
| Msa0176260 | Msa1443620 | 0.850896 | 1.262001e-60 | -8.615850e-47 |
| Msa0176260 | Msa1443640 | 0.815400 | 9.428502e-52 | -8.615850e-47 |
| Msa0176260 | Msa1460750 | 0.810639 | 1.042947e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0176260 | MtrunA17_Chr1g0198081 | 98.753 | 481 | 6 | 0 | 1 | 481 | 1 | 481 | 0.0 | 965 |
| Msa0176260 | MtrunA17_Chr4g0027241 | 58.225 | 462 | 192 | 1 | 19 | 480 | 1 | 461 | 0.0 | 575 |
| Msa0176260 | MtrunA17_Chr8g0387941 | 46.606 | 442 | 234 | 2 | 41 | 481 | 10 | 450 | 1.79e-138 | 406 |
| Msa0176260 | MtrunA17_Chr1g0184721 | 35.047 | 428 | 258 | 10 | 61 | 480 | 24 | 439 | 4.58e-75 | 243 |
| Msa0176260 | MtrunA17_Chr4g0027261 | 55.440 | 193 | 79 | 1 | 288 | 480 | 1 | 186 | 2.91e-67 | 214 |
| Msa0176260 | MtrunA17_Chr6g0458931 | 29.530 | 447 | 294 | 9 | 40 | 479 | 23 | 455 | 2.23e-57 | 196 |
| Msa0176260 | MtrunA17_Chr2g0331721 | 28.842 | 475 | 310 | 12 | 19 | 479 | 1 | 461 | 3.92e-54 | 188 |
| Msa0176260 | MtrunA17_Chr8g0376991 | 30.536 | 429 | 271 | 11 | 61 | 479 | 25 | 436 | 7.08e-52 | 181 |
| Msa0176260 | MtrunA17_Chr5g0436281 | 32.405 | 395 | 247 | 8 | 90 | 480 | 4 | 382 | 1.49e-49 | 174 |
| Msa0176260 | MtrunA17_Chr4g0057851 | 28.230 | 418 | 279 | 9 | 66 | 476 | 17 | 420 | 1.99e-47 | 169 |
| Msa0176260 | MtrunA17_Chr4g0058161 | 29.362 | 470 | 298 | 13 | 20 | 480 | 5 | 449 | 3.26e-46 | 166 |
| Msa0176260 | MtrunA17_Chr6g0459021 | 28.791 | 455 | 299 | 10 | 32 | 479 | 11 | 447 | 9.56e-45 | 162 |
| Msa0176260 | MtrunA17_Chr6g0459031 | 29.812 | 426 | 279 | 8 | 61 | 479 | 16 | 428 | 1.62e-43 | 159 |
| Msa0176260 | MtrunA17_Chr7g0230011 | 29.060 | 468 | 300 | 11 | 19 | 479 | 1 | 443 | 1.62e-43 | 159 |
| Msa0176260 | MtrunA17_Chr6g0458921 | 29.343 | 426 | 281 | 8 | 61 | 479 | 16 | 428 | 8.52e-43 | 157 |
| Msa0176260 | MtrunA17_Chr3g0122921 | 26.452 | 465 | 293 | 13 | 25 | 479 | 3 | 428 | 7.22e-42 | 154 |
| Msa0176260 | MtrunA17_Chr1g0198541 | 29.837 | 429 | 274 | 11 | 61 | 479 | 26 | 437 | 7.95e-42 | 154 |
| Msa0176260 | MtrunA17_Chr1g0198531 | 28.731 | 449 | 289 | 12 | 41 | 479 | 10 | 437 | 1.43e-41 | 154 |
| Msa0176260 | MtrunA17_Chr3g0077651 | 29.437 | 462 | 293 | 14 | 33 | 479 | 26 | 469 | 1.04e-40 | 152 |
| Msa0176260 | MtrunA17_Chr5g0422741 | 28.904 | 429 | 278 | 11 | 61 | 479 | 28 | 439 | 8.38e-40 | 149 |
| Msa0176260 | MtrunA17_Chr6g0459001 | 28.602 | 465 | 274 | 11 | 61 | 479 | 24 | 476 | 1.15e-38 | 146 |
| Msa0176260 | MtrunA17_Chr6g0459011 | 29.484 | 407 | 266 | 9 | 75 | 474 | 1 | 393 | 4.03e-38 | 143 |
| Msa0176260 | MtrunA17_Chr1g0206871 | 27.391 | 460 | 287 | 11 | 62 | 481 | 18 | 470 | 1.55e-37 | 143 |
| Msa0176260 | MtrunA17_Chr3g0112971 | 30.184 | 381 | 244 | 9 | 105 | 480 | 72 | 435 | 4.41e-37 | 141 |
| Msa0176260 | MtrunA17_Chr3g0143701 | 28.066 | 424 | 275 | 13 | 61 | 465 | 86 | 498 | 2.98e-36 | 140 |
| Msa0176260 | MtrunA17_Chr2g0328081 | 27.465 | 426 | 289 | 8 | 61 | 479 | 16 | 428 | 3.66e-36 | 138 |
| Msa0176260 | MtrunA17_Chr4g0037201 | 25.720 | 486 | 303 | 17 | 39 | 481 | 41 | 511 | 9.56e-30 | 122 |
| Msa0176260 | MtrunA17_Chr1g0146411 | 26.500 | 400 | 262 | 12 | 70 | 445 | 44 | 435 | 1.08e-29 | 121 |
| Msa0176260 | MtrunA17_Chr3g0125081 | 25.833 | 480 | 315 | 15 | 35 | 479 | 3 | 476 | 1.48e-29 | 120 |
| Msa0176260 | MtrunA17_Chr1g0159761 | 26.959 | 434 | 270 | 16 | 32 | 430 | 2 | 423 | 4.79e-29 | 119 |
| Msa0176260 | MtrunA17_Chr3g0140761 | 24.524 | 473 | 305 | 14 | 43 | 478 | 21 | 478 | 1.69e-28 | 117 |
| Msa0176260 | MtrunA17_Chr3g0103231 | 26.396 | 394 | 256 | 11 | 70 | 435 | 34 | 421 | 1.90e-28 | 117 |
| Msa0176260 | MtrunA17_Chr3g0130641 | 26.116 | 448 | 280 | 18 | 70 | 481 | 44 | 476 | 2.43e-28 | 117 |
| Msa0176260 | MtrunA17_Chr3g0125091 | 25.207 | 484 | 314 | 17 | 35 | 479 | 3 | 477 | 6.12e-28 | 116 |
| Msa0176260 | MtrunA17_Chr3g0125101 | 25.513 | 439 | 292 | 11 | 70 | 479 | 45 | 477 | 1.12e-27 | 115 |
| Msa0176260 | MtrunA17_Chr3g0103221 | 24.826 | 431 | 288 | 13 | 70 | 471 | 41 | 464 | 1.97e-27 | 114 |
| Msa0176260 | MtrunA17_Chr8g0384661 | 25.290 | 518 | 325 | 21 | 1 | 481 | 1 | 493 | 5.43e-26 | 110 |
| Msa0176260 | MtrunA17_Chr1g0146491 | 24.835 | 455 | 292 | 17 | 62 | 478 | 26 | 468 | 5.93e-26 | 110 |
| Msa0176260 | MtrunA17_Chr3g0103211 | 28.244 | 393 | 250 | 12 | 70 | 435 | 34 | 421 | 7.36e-26 | 110 |
| Msa0176260 | MtrunA17_Chr3g0130651 | 26.904 | 394 | 241 | 14 | 70 | 430 | 37 | 416 | 7.69e-26 | 110 |
| Msa0176260 | MtrunA17_Chr5g0406331 | 27.430 | 463 | 272 | 18 | 51 | 479 | 78 | 510 | 1.05e-25 | 110 |
| Msa0176260 | MtrunA17_Chr3g0140531 | 23.950 | 476 | 322 | 15 | 33 | 478 | 2 | 467 | 3.38e-22 | 99.4 |
| Msa0176260 | MtrunA17_Chr5g0406351 | 25.546 | 458 | 288 | 16 | 51 | 479 | 99 | 532 | 3.47e-22 | 99.8 |
| Msa0176260 | MtrunA17_Chr4g0038711 | 24.408 | 422 | 285 | 13 | 69 | 468 | 80 | 489 | 4.39e-22 | 99.0 |
| Msa0176260 | MtrunA17_Chr5g0447221 | 26.448 | 397 | 252 | 15 | 70 | 435 | 40 | 427 | 1.52e-21 | 97.1 |
| Msa0176260 | MtrunA17_Chr1g0206851 | 27.273 | 374 | 216 | 11 | 146 | 481 | 25 | 380 | 2.32e-20 | 92.8 |
| Msa0176260 | MtrunA17_Chr3g0103271 | 26.020 | 392 | 251 | 16 | 70 | 430 | 38 | 421 | 4.24e-20 | 92.8 |
| Msa0176260 | MtrunA17_Chr1g0146391 | 24.385 | 447 | 286 | 19 | 70 | 479 | 23 | 454 | 9.48e-20 | 91.7 |
| Msa0176260 | MtrunA17_Chr2g0281341 | 27.397 | 292 | 187 | 8 | 40 | 316 | 77 | 358 | 9.61e-20 | 92.0 |
| Msa0176260 | MtrunA17_Chr4g0037361 | 23.992 | 471 | 305 | 13 | 37 | 480 | 15 | 459 | 1.40e-17 | 85.1 |
| Msa0176260 | MtrunA17_Chr3g0114951 | 23.721 | 430 | 277 | 11 | 76 | 480 | 41 | 444 | 2.95e-17 | 84.0 |
| Msa0176260 | MtrunA17_Chr1g0206831 | 25.680 | 331 | 208 | 10 | 175 | 477 | 19 | 339 | 1.14e-16 | 81.3 |
| Msa0176260 | MtrunA17_Chr1g0206821 | 27.615 | 239 | 157 | 8 | 62 | 285 | 25 | 262 | 1.81e-16 | 82.0 |
| Msa0176260 | MtrunA17_Chr1g0206821 | 27.803 | 223 | 139 | 4 | 276 | 481 | 313 | 530 | 1.09e-11 | 67.0 |
| Msa0176260 | MtrunA17_Chr1g0146331 | 24.236 | 458 | 274 | 20 | 70 | 479 | 31 | 463 | 5.10e-16 | 80.5 |
| Msa0176260 | MtrunA17_Chr3g0140541 | 23.134 | 402 | 276 | 10 | 70 | 444 | 36 | 431 | 2.13e-15 | 78.6 |
| Msa0176260 | MtrunA17_Chr7g0241841 | 23.077 | 429 | 292 | 11 | 18 | 437 | 5 | 404 | 4.39e-14 | 74.3 |
| Msa0176260 | MtrunA17_Chr5g0447231 | 24.173 | 393 | 257 | 14 | 70 | 430 | 36 | 419 | 1.62e-13 | 72.4 |
| Msa0176260 | MtrunA17_Chr5g0402151 | 25.564 | 266 | 161 | 10 | 70 | 326 | 11 | 248 | 1.80e-13 | 70.9 |
| Msa0176260 | MtrunA17_Chr2g0281021 | 41.096 | 73 | 33 | 2 | 412 | 479 | 1 | 68 | 2.52e-13 | 65.1 |
| Msa0176260 | MtrunA17_Chr4g0006031 | 22.727 | 506 | 317 | 17 | 2 | 480 | 5 | 463 | 8.60e-13 | 70.5 |
| Msa0176260 | MtrunA17_Chr5g0436811 | 22.222 | 450 | 281 | 14 | 63 | 480 | 50 | 462 | 1.47e-12 | 69.7 |
| Msa0176260 | MtrunA17_Chr3g0103261 | 31.405 | 121 | 80 | 3 | 70 | 188 | 34 | 153 | 7.16e-11 | 60.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0176260 | AT1G08230.2 | 52.715 | 442 | 207 | 1 | 41 | 480 | 9 | 450 | 1.48e-173 | 496 |
| Msa0176260 | AT5G41800.1 | 49.315 | 438 | 219 | 3 | 46 | 481 | 13 | 449 | 1.42e-136 | 401 |
| Msa0176260 | AT1G08230.3 | 51.714 | 350 | 167 | 1 | 133 | 480 | 1 | 350 | 4.60e-132 | 386 |
| Msa0176260 | AT1G08230.4 | 51.672 | 329 | 157 | 1 | 154 | 480 | 3 | 331 | 1.67e-121 | 358 |
| Msa0176260 | AT1G08230.6 | 51.672 | 329 | 157 | 1 | 154 | 480 | 3 | 331 | 1.67e-121 | 358 |
| Msa0176260 | AT1G08230.5 | 51.672 | 329 | 157 | 1 | 154 | 480 | 3 | 331 | 1.67e-121 | 358 |
| Msa0176260 | AT5G40780.1 | 29.741 | 464 | 299 | 10 | 23 | 479 | 3 | 446 | 1.66e-56 | 194 |
| Msa0176260 | AT3G55740.1 | 31.616 | 427 | 271 | 9 | 59 | 480 | 28 | 438 | 1.49e-54 | 189 |
| Msa0176260 | AT5G40780.3 | 31.796 | 412 | 260 | 9 | 75 | 479 | 1 | 398 | 1.17e-52 | 183 |
| Msa0176260 | AT5G40780.2 | 31.796 | 412 | 260 | 9 | 75 | 479 | 1 | 398 | 1.17e-52 | 183 |
| Msa0176260 | AT1G48640.1 | 29.955 | 444 | 290 | 10 | 43 | 479 | 24 | 453 | 1.91e-52 | 184 |
| Msa0176260 | AT2G39890.2 | 30.841 | 428 | 273 | 10 | 59 | 480 | 31 | 441 | 2.16e-52 | 183 |
| Msa0176260 | AT2G39890.1 | 30.841 | 428 | 273 | 10 | 59 | 480 | 31 | 441 | 2.16e-52 | 183 |
| Msa0176260 | AT3G55740.2 | 32.152 | 395 | 248 | 8 | 90 | 480 | 4 | 382 | 2.70e-52 | 181 |
| Msa0176260 | AT3G55740.3 | 32.152 | 395 | 248 | 8 | 90 | 480 | 4 | 382 | 2.70e-52 | 181 |
| Msa0176260 | AT2G36590.1 | 32.944 | 428 | 264 | 10 | 59 | 480 | 25 | 435 | 1.28e-51 | 181 |
| Msa0176260 | AT2G39890.3 | 31.313 | 396 | 250 | 9 | 90 | 480 | 4 | 382 | 6.97e-50 | 175 |
| Msa0176260 | AT1G24400.1 | 28.662 | 471 | 296 | 12 | 19 | 479 | 1 | 441 | 1.03e-46 | 168 |
| Msa0176260 | AT1G71680.1 | 29.437 | 462 | 298 | 12 | 30 | 479 | 3 | 448 | 3.57e-46 | 167 |
| Msa0176260 | AT1G61270.1 | 29.371 | 429 | 277 | 10 | 49 | 465 | 23 | 437 | 1.33e-45 | 165 |
| Msa0176260 | AT3G01760.1 | 27.818 | 417 | 276 | 9 | 61 | 465 | 33 | 436 | 7.04e-41 | 152 |
| Msa0176260 | AT1G67640.1 | 28.855 | 454 | 293 | 10 | 42 | 479 | 2 | 441 | 2.48e-40 | 150 |
| Msa0176260 | AT1G71680.2 | 28.530 | 347 | 229 | 8 | 30 | 367 | 3 | 339 | 2.86e-38 | 143 |
| Msa0176260 | AT1G25530.1 | 28.904 | 429 | 276 | 11 | 62 | 479 | 30 | 440 | 2.75e-37 | 142 |
| Msa0176260 | AT2G36590.2 | 33.447 | 293 | 181 | 6 | 59 | 349 | 25 | 305 | 5.05e-35 | 134 |
| Msa0176260 | AT5G09220.1 | 26.829 | 451 | 277 | 16 | 70 | 481 | 56 | 492 | 3.66e-31 | 126 |
| Msa0176260 | AT1G10010.2 | 26.386 | 451 | 293 | 13 | 62 | 480 | 31 | 474 | 1.30e-30 | 124 |
| Msa0176260 | AT1G10010.1 | 26.386 | 451 | 293 | 13 | 62 | 480 | 30 | 473 | 1.53e-30 | 124 |
| Msa0176260 | AT5G63850.1 | 25.778 | 450 | 283 | 15 | 70 | 481 | 29 | 465 | 3.95e-29 | 120 |
| Msa0176260 | AT1G77380.1 | 25.342 | 438 | 293 | 11 | 70 | 478 | 40 | 472 | 4.05e-27 | 114 |
| Msa0176260 | AT1G58360.1 | 23.542 | 480 | 323 | 14 | 31 | 478 | 13 | 480 | 1.17e-25 | 110 |
| Msa0176260 | AT1G44100.1 | 25.764 | 458 | 278 | 16 | 70 | 481 | 38 | 479 | 1.66e-25 | 109 |
| Msa0176260 | AT5G49630.1 | 25.635 | 433 | 267 | 15 | 35 | 427 | 10 | 427 | 5.13e-23 | 102 |
| Msa0176260 | AT4G35180.1 | 24.884 | 430 | 292 | 14 | 61 | 473 | 59 | 474 | 6.33e-20 | 92.8 |
| Msa0176260 | AT1G47670.1 | 24.401 | 459 | 296 | 15 | 36 | 465 | 69 | 505 | 3.83e-19 | 90.5 |
| Msa0176260 | AT5G23810.1 | 25.871 | 402 | 237 | 15 | 70 | 427 | 36 | 420 | 1.31e-16 | 82.4 |
| Msa0176260 | AT1G77690.1 | 22.970 | 431 | 291 | 11 | 32 | 451 | 18 | 418 | 3.39e-15 | 78.2 |
| Msa0176260 | AT4G35180.2 | 26.866 | 268 | 174 | 9 | 61 | 316 | 59 | 316 | 6.06e-15 | 76.3 |
| Msa0176260 | AT2G21050.1 | 23.261 | 417 | 277 | 11 | 30 | 437 | 16 | 398 | 1.00e-14 | 76.6 |
| Msa0176260 | AT2G38120.2 | 22.705 | 414 | 276 | 11 | 33 | 437 | 26 | 404 | 4.35e-12 | 68.2 |
| Msa0176260 | AT2G38120.1 | 22.152 | 474 | 309 | 14 | 32 | 480 | 25 | 463 | 5.06e-12 | 68.6 |
| Msa0176260 | AT5G23810.2 | 26.316 | 323 | 193 | 13 | 70 | 364 | 36 | 341 | 3.61e-11 | 65.1 |
Find 95 sgRNAs with CRISPR-Local
Find 191 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCAATTTATCATATGTTT+TGG | 0.217202 | 1_4:-62559978 | Msa0176260:CDS |
| GCAAAACTAACCTGTATTTC+TGG | 0.221480 | 1_4:+62559399 | None:intergenic |
| GTGTTGCTATCTCTGGTTAT+TGG | 0.236584 | 1_4:-62558822 | Msa0176260:CDS |
| CTCCACATATAATGATAAAT+TGG | 0.244397 | 1_4:+62559758 | None:intergenic |
| AAGACTTAAATTAGTTTAGA+TGG | 0.247828 | 1_4:+62561170 | None:intergenic |
| GCCATTCTTTCCAGATATAA+TGG | 0.250563 | 1_4:-62558098 | Msa0176260:CDS |
| GTTGGTTTGGAGGAGTAATT+TGG | 0.258662 | 1_4:-62560676 | Msa0176260:CDS |
| ATTGAAAACTGTCCTTTCTT+TGG | 0.270053 | 1_4:+62558193 | None:intergenic |
| CCAAACAATGCCATTATATC+TGG | 0.276029 | 1_4:+62558088 | None:intergenic |
| TAAAGCTTCATTGATCCTTC+TGG | 0.278033 | 1_4:+62559781 | None:intergenic |
| CCCAGAAGAGTAAATGAAAA+TGG | 0.280555 | 1_4:+62560698 | None:intergenic |
| TGGAGTTGTAACTATGCTTT+TGG | 0.281191 | 1_4:-62559740 | Msa0176260:CDS |
| ATCTCTGGTTATTGGGCATT+TGG | 0.283481 | 1_4:-62558814 | Msa0176260:CDS |
| CCAAACAAGGCATAATCTAT+TGG | 0.285091 | 1_4:-62557997 | Msa0176260:CDS |
| TGTTGCTATCTCTGGTTATT+GGG | 0.292003 | 1_4:-62558821 | Msa0176260:CDS |
| CCAATAGATTATGCCTTGTT+TGG | 0.304670 | 1_4:+62557997 | None:intergenic |
| GATTCAAATAATTCATTTGT+TGG | 0.306422 | 1_4:+62558229 | None:intergenic |
| CCGAGAGAGTATTCTGTAAA+AGG | 0.306567 | 1_4:-62559498 | Msa0176260:CDS |
| TTTACTCTTCTGGGTTGGTT+TGG | 0.313104 | 1_4:-62560689 | Msa0176260:CDS |
| GTAATTTGGTTGGTCCTTGC+AGG | 0.336273 | 1_4:-62560662 | Msa0176260:CDS |
| CCAGATATAATGGCATTGTT+TGG | 0.340494 | 1_4:-62558088 | Msa0176260:CDS |
| CTCATCCTTCTTCAAGTCTT+CGG | 0.352088 | 1_4:-62558703 | Msa0176260:CDS |
| TATTGGGTGAATACATTGAT+TGG | 0.369575 | 1_4:-62557980 | Msa0176260:CDS |
| TATTTCAGTGTTGCTATCTC+TGG | 0.372416 | 1_4:-62558829 | Msa0176260:CDS |
| ACTCTTCTGGGTTGGTTTGG+AGG | 0.373429 | 1_4:-62560686 | Msa0176260:CDS |
| CAAACAAGGCATAATCTATT+GGG | 0.383365 | 1_4:-62557996 | Msa0176260:CDS |
| GCAGTTTAGATTCAGAGATA+TGG | 0.408710 | 1_4:-62560570 | Msa0176260:CDS |
| CAAAACTATTGCTTCCCAAA+TGG | 0.410549 | 1_4:-62558747 | Msa0176260:CDS |
| CAATTCTTGCTAACTACATT+GGG | 0.412959 | 1_4:-62558774 | Msa0176260:CDS |
| TATACAAGTGATAGTGAAAA+GGG | 0.415951 | 1_4:-62560964 | Msa0176260:CDS |
| TGGGATTATTCCAGAAATAC+AGG | 0.421758 | 1_4:-62559409 | Msa0176260:intron |
| GCCATTATATCTGGAAAGAA+TGG | 0.421778 | 1_4:+62558097 | None:intergenic |
| AAGTTTGTTCTTGTTTCTAA+AGG | 0.431928 | 1_4:-62560889 | Msa0176260:intron |
| AGATGGGCAAAATACTATAT+AGG | 0.433545 | 1_4:-62560005 | Msa0176260:CDS |
| AAACTGTTTGGTGTCTTCAA+TGG | 0.434041 | 1_4:-62559462 | Msa0176260:CDS |
| TGGGCATTTGGAAATGCATC+TGG | 0.435496 | 1_4:-62558802 | Msa0176260:CDS |
| ACAATTCTTGCTAACTACAT+TGG | 0.436770 | 1_4:-62558775 | Msa0176260:CDS |
| TCTCATGAAGATAAACTGTT+TGG | 0.440619 | 1_4:-62559474 | Msa0176260:CDS |
| GTGATTGGTGGTCCTCTTGT+GGG | 0.456203 | 1_4:-62559951 | Msa0176260:CDS |
| ATATACAAGTGATAGTGAAA+AGG | 0.456820 | 1_4:-62560965 | Msa0176260:CDS |
| TACCAATTTATCATTATATG+TGG | 0.457634 | 1_4:-62559760 | Msa0176260:CDS |
| ATCCTTCTGGATGGTAAAGT+TGG | 0.467861 | 1_4:+62559794 | None:intergenic |
| TTTCATTTACTCTTCTGGGT+TGG | 0.472965 | 1_4:-62560694 | Msa0176260:CDS |
| GTTAATAGAATATAGGAAGA+AGG | 0.473532 | 1_4:+62557800 | None:intergenic |
| TAGATTATGCCTTGTTTGGA+AGG | 0.479683 | 1_4:+62558001 | None:intergenic |
| TCATTTGACAACATCTATTG+TGG | 0.482815 | 1_4:-62560741 | Msa0176260:CDS |
| GATTCAGCAAGAAATTAAGA+TGG | 0.483527 | 1_4:-62561016 | Msa0176260:CDS |
| CATTTGACAACATCTATTGT+GGG | 0.484467 | 1_4:-62560740 | Msa0176260:CDS |
| AACTTTGGCACCTCCTGTGA+AGG | 0.500740 | 1_4:-62558902 | Msa0176260:CDS |
| AAGAAGGATGAGTATATTAG+TGG | 0.500852 | 1_4:+62558714 | None:intergenic |
| AATGGAAGTGTAAGAATCAC+TGG | 0.501324 | 1_4:+62560716 | None:intergenic |
| CCCTATCACAACTAAAATTG+AGG | 0.506614 | 1_4:+62557949 | None:intergenic |
| ATTCAGCAAGAAATTAAGAT+GGG | 0.508045 | 1_4:-62561015 | Msa0176260:CDS |
| CATAATTATTTGCTAGCTCA+AGG | 0.512919 | 1_4:-62561085 | Msa0176260:five_prime_UTR |
| AGTGATTGGTGGTCCTCTTG+TGG | 0.515725 | 1_4:-62559952 | Msa0176260:CDS |
| GTGAATACATTGATTGGAGG+AGG | 0.520319 | 1_4:-62557974 | Msa0176260:CDS |
| ATTGATCTAGAGAGCACCCT+TGG | 0.527273 | 1_4:+62558157 | None:intergenic |
| AATAATCCCACTAGCATATG+TGG | 0.533821 | 1_4:+62559422 | None:intergenic |
| TATCTCAAGGAGTGAAAGGA+TGG | 0.534203 | 1_4:+62559709 | None:intergenic |
| TTGGAACATCATGCTCAGCT+TGG | 0.539890 | 1_4:-62560599 | Msa0176260:CDS |
| TGTTGTGGCAGGACCAAGAT+GGG | 0.545193 | 1_4:-62560021 | Msa0176260:intron |
| AGACTCTTTCCTCCCACAAG+AGG | 0.553648 | 1_4:+62559939 | None:intergenic |
| TATCTCTGAATCTAAACTGC+CGG | 0.555341 | 1_4:+62560573 | None:intergenic |
| TGGGTGAATACATTGATTGG+AGG | 0.555938 | 1_4:-62557977 | Msa0176260:CDS |
| ACTTCACCTGAGTTAGATGC+AGG | 0.556542 | 1_4:-62560916 | Msa0176260:CDS |
| AATGTATCTCAAGGAGTGAA+AGG | 0.559352 | 1_4:+62559705 | None:intergenic |
| CAATGCGCAATGTTGTGCCA+AGG | 0.562014 | 1_4:-62558174 | Msa0176260:CDS |
| GTTTGGAGGAGTAATTTGGT+TGG | 0.564814 | 1_4:-62560672 | Msa0176260:CDS |
| AATCAGATTAATGTATCTCA+AGG | 0.567736 | 1_4:+62559696 | None:intergenic |
| GAAACATGTTTGAATGATGA+TGG | 0.569231 | 1_4:+62561194 | None:intergenic |
| ACTTTCAAACCTTCCAAACA+AGG | 0.573660 | 1_4:-62558010 | Msa0176260:CDS |
| TACCAACTTTACCATCCAGA+AGG | 0.580856 | 1_4:-62559796 | Msa0176260:CDS |
| AACATATGATAAATTGAAGA+GGG | 0.583245 | 1_4:+62559982 | None:intergenic |
| ATCTAACTCAGGTGAAGTAG+AGG | 0.591866 | 1_4:+62560921 | None:intergenic |
| TTGCTACCACATATGCTAGT+GGG | 0.592496 | 1_4:-62559428 | Msa0176260:CDS |
| ATCATGCTCAGCTTGGTCGC+CGG | 0.597950 | 1_4:-62560592 | Msa0176260:CDS |
| TTTGCTCCTGCATCTAACTC+AGG | 0.601599 | 1_4:+62560910 | None:intergenic |
| ATTGCTACCACATATGCTAG+TGG | 0.604816 | 1_4:-62559429 | Msa0176260:CDS |
| TCAATCCGAAGACTTGAAGA+AGG | 0.606882 | 1_4:+62558698 | None:intergenic |
| ACTTTGGCACCTCCTGTGAA+GGG | 0.608006 | 1_4:-62558901 | Msa0176260:CDS |
| ATTGGCAAAATGAAATCTAG+AGG | 0.608137 | 1_4:+62558049 | None:intergenic |
| TATGCAATATTTCTCACCGT+CGG | 0.609864 | 1_4:-62559652 | Msa0176260:CDS |
| AAACATATGATAAATTGAAG+AGG | 0.610873 | 1_4:+62559981 | None:intergenic |
| ATGTTGTGGCAGGACCAAGA+TGG | 0.614341 | 1_4:-62560022 | Msa0176260:intron |
| GCTTCATTGATCCTTCTGGA+TGG | 0.631067 | 1_4:+62559785 | None:intergenic |
| AATGCGCAATGTTGTGCCAA+GGG | 0.637146 | 1_4:-62558173 | Msa0176260:CDS |
| TGTGGGAGGAAAGAGTCTCA+AGG | 0.646216 | 1_4:-62559934 | Msa0176260:intron |
| TGAATACATTGATTGGAGGA+GGG | 0.653687 | 1_4:-62557973 | Msa0176260:CDS |
| TCAAGTCTTCGGATTGACTG+CGG | 0.656105 | 1_4:-62558692 | Msa0176260:intron |
| AGAATGTGATCACTCCTGCA+AGG | 0.671411 | 1_4:+62560648 | None:intergenic |
| ATTGGTGGTCCTCTTGTGGG+AGG | 0.705316 | 1_4:-62559948 | Msa0176260:CDS |
| TTTACAGAATACTCTCTCGG+CGG | 0.727989 | 1_4:+62559501 | None:intergenic |
| ACCGACGTATATCGAGCCGA+CGG | 0.742222 | 1_4:+62559636 | None:intergenic |
| GTAGGATCATGGTTACACTG+TGG | 0.750740 | 1_4:-62560767 | Msa0176260:intron |
| ACCGTCGGCTCGATATACGT+CGG | 0.773213 | 1_4:-62559637 | Msa0176260:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TGATTAATTAATTTACTATA+TGG | - | chr1_4:62558211-62558230 | Msa0176260:CDS | 10.0% |
| !! | AATTAATTTACTATATGGTT+TGG | - | chr1_4:62558216-62558235 | Msa0176260:CDS | 15.0% |
| !!! | TTCAATTTATCATATGTTTT+GGG | - | chr1_4:62559042-62559061 | Msa0176260:intron | 15.0% |
| !!! | AGAATTGATTTTTACATTTT+TGG | - | chr1_4:62559739-62559758 | Msa0176260:CDS | 15.0% |
| !! | ATAAGCATTACTATATAATA+AGG | + | chr1_4:62560646-62560665 | None:intergenic | 15.0% |
| !!! | GAATTATTTGAATCAATTTT+CGG | - | chr1_4:62560799-62560818 | Msa0176260:intron | 15.0% |
| !!! | ATAATCATTTTTACATATTC+AGG | + | chr1_4:62561157-62561176 | None:intergenic | 15.0% |
| !! | TGAATATGTAAAAATGATTA+TGG | - | chr1_4:62561156-62561175 | Msa0176260:five_prime_UTR | 15.0% |
| !!! | AAGACTTAAATTAGTTTAGA+TGG | + | chr1_4:62557852-62557871 | None:intergenic | 20.0% |
| !!! | TAATCTTTTATCTATTGTCT+TGG | - | chr1_4:62558401-62558420 | Msa0176260:intron | 20.0% |
| !! | TGTAACTTAAATGACTAAAT+TGG | + | chr1_4:62558680-62558699 | None:intergenic | 20.0% |
| !! | AACATATGATAAATTGAAGA+GGG | + | chr1_4:62559040-62559059 | None:intergenic | 20.0% |
| !! | AAACATATGATAAATTGAAG+AGG | + | chr1_4:62559041-62559060 | None:intergenic | 20.0% |
| !!! | CTTCAATTTATCATATGTTT+TGG | - | chr1_4:62559041-62559060 | Msa0176260:intron | 20.0% |
| !! | TACCAATTTATCATTATATG+TGG | - | chr1_4:62559259-62559278 | Msa0176260:intron | 20.0% |
| !! | TAATTGGAATCAAATATGTT+TGG | - | chr1_4:62559677-62559696 | Msa0176260:CDS | 20.0% |
| !! | TGTAAAAATCAATTCTACAT+CGG | + | chr1_4:62559735-62559754 | None:intergenic | 20.0% |
| !! | AGAGTTTATGTTATATATGT+TGG | - | chr1_4:62560496-62560515 | Msa0176260:intron | 20.0% |
| !! | TTATAACTTGATTATATTGC+AGG | - | chr1_4:62560756-62560775 | Msa0176260:CDS | 20.0% |
| !! | GATTCAAATAATTCATTTGT+TGG | + | chr1_4:62560793-62560812 | None:intergenic | 20.0% |
| !! | GTTATATTGTAAAAAACCAT+TGG | + | chr1_4:62560991-62561010 | None:intergenic | 20.0% |
| ! | ATTCAGCAAGAAATTAAGAT+GGG | - | chr1_4:62558004-62558023 | Msa0176260:CDS | 25.0% |
| !! | ATATACAAGTGATAGTGAAA+AGG | - | chr1_4:62558054-62558073 | Msa0176260:CDS | 25.0% |
| !! | TATACAAGTGATAGTGAAAA+GGG | - | chr1_4:62558055-62558074 | Msa0176260:CDS | 25.0% |
| !!! | AAGTTTGTTCTTGTTTCTAA+AGG | - | chr1_4:62558130-62558149 | Msa0176260:CDS | 25.0% |
| !! | TTTGGTTGTGTATATTTTGT+AGG | - | chr1_4:62558234-62558253 | Msa0176260:CDS | 25.0% |
| !! | TCGTTGTTGTTATTAATCAT+TGG | - | chr1_4:62558530-62558549 | Msa0176260:intron | 25.0% |
| ! | AATATTGTGCTTATATGAGT+AGG | + | chr1_4:62558635-62558654 | None:intergenic | 25.0% |
| !! | AATTGAGATTGTAGCTTTTA+AGG | - | chr1_4:62558839-62558858 | Msa0176260:CDS | 25.0% |
| !!! | TCTCTAAAATTGTATACAGT+AGG | + | chr1_4:62558871-62558890 | None:intergenic | 25.0% |
| !!! | TAATTTGCTTGAAAATGTTG+TGG | - | chr1_4:62558983-62559002 | Msa0176260:intron | 25.0% |
| ! | CTCAAGGTAATAACATAAAA+AGG | - | chr1_4:62559101-62559120 | Msa0176260:intron | 25.0% |
| ! | GAAACTATAGTATAAGAATG+TGG | + | chr1_4:62559163-62559182 | None:intergenic | 25.0% |
| ! | CTTATACTATAGTTTCACTA+AGG | - | chr1_4:62559167-62559186 | Msa0176260:intron | 25.0% |
| ! | CTCCACATATAATGATAAAT+TGG | + | chr1_4:62559264-62559283 | None:intergenic | 25.0% |
| ! | AATCAGATTAATGTATCTCA+AGG | + | chr1_4:62559326-62559345 | None:intergenic | 25.0% |
| ! | TAGAGAACAAATGTTGTAAT+TGG | - | chr1_4:62559661-62559680 | Msa0176260:CDS | 25.0% |
| ! | AAGTTAAAAATCGATTGTAG+AGG | + | chr1_4:62559835-62559854 | None:intergenic | 25.0% |
| ! | TTGGTTATTCTAAACTCAAA+AGG | + | chr1_4:62560045-62560064 | None:intergenic | 25.0% |
| ! | ATGTATATGCATAACAGTTT+AGG | + | chr1_4:62560361-62560380 | None:intergenic | 25.0% |
| !! | TCAATTTTGCGATTCAAATT+CGG | - | chr1_4:62560384-62560403 | Msa0176260:intron | 25.0% |
| ! | GAACTTATTTATAGCTTAGT+TGG | - | chr1_4:62560421-62560440 | Msa0176260:intron | 25.0% |
| ! | TAAATGTACATGTTACTGTT+TGG | - | chr1_4:62560459-62560478 | Msa0176260:intron | 25.0% |
| ! | TTATTTCAATAAAGCTTCGA+TGG | - | chr1_4:62560534-62560553 | Msa0176260:intron | 25.0% |
| ! | TCAAGTTATAATCATTCATC+AGG | + | chr1_4:62560747-62560766 | None:intergenic | 25.0% |
| GAAACATGTTTGAATGATGA+TGG | + | chr1_4:62557828-62557847 | None:intergenic | 30.0% | |
| ! | CATAATTATTTGCTAGCTCA+AGG | - | chr1_4:62557934-62557953 | Msa0176260:CDS | 30.0% |
| GATTCAGCAAGAAATTAAGA+TGG | - | chr1_4:62558003-62558022 | Msa0176260:CDS | 30.0% | |
| ! | GTGTATATTTTGTAGGATCA+TGG | - | chr1_4:62558241-62558260 | Msa0176260:CDS | 30.0% |
| TCATTTGACAACATCTATTG+TGG | - | chr1_4:62558278-62558297 | Msa0176260:intron | 30.0% | |
| CATTTGACAACATCTATTGT+GGG | - | chr1_4:62558279-62558298 | Msa0176260:intron | 30.0% | |
| ! | TCCATTTTCATTTACTCTTC+TGG | - | chr1_4:62558320-62558339 | Msa0176260:intron | 30.0% |
| ! | CCATTTTCATTTACTCTTCT+GGG | - | chr1_4:62558321-62558340 | Msa0176260:intron | 30.0% |
| ! | GATATGGCTAGAGATATTTT+AGG | - | chr1_4:62558465-62558484 | Msa0176260:intron | 30.0% |
| ATATGAGTAGGAATCAAACT+CGG | + | chr1_4:62558623-62558642 | None:intergenic | 30.0% | |
| AAAATTGTATACAGTAGGCA+AGG | + | chr1_4:62558866-62558885 | None:intergenic | 30.0% | |
| ! | ATATAGTATTTTGCCCATCT+TGG | + | chr1_4:62559014-62559033 | None:intergenic | 30.0% |
| AGATGGGCAAAATACTATAT+AGG | - | chr1_4:62559014-62559033 | Msa0176260:intron | 30.0% | |
| GTAAGGAGATAAAAACACAA+TGG | - | chr1_4:62559404-62559423 | Msa0176260:intron | 30.0% | |
| AGATAAAAACACAATGGCAT+TGG | - | chr1_4:62559410-62559429 | Msa0176260:CDS | 30.0% | |
| TCTCATGAAGATAAACTGTT+TGG | - | chr1_4:62559545-62559564 | Msa0176260:intron | 30.0% | |
| ! | TTTGGTTTCACTTTATGAAG+AGG | - | chr1_4:62559695-62559714 | Msa0176260:CDS | 30.0% |
| !! | CACTTTAGAATCAATTCTGA+AGG | + | chr1_4:62559790-62559809 | None:intergenic | 30.0% |
| ! | AATTTTGTCTTCTCCAAAAG+TGG | - | chr1_4:62559930-62559949 | Msa0176260:intron | 30.0% |
| ! | CAATTCTTGTGCAATTTTGT+AGG | - | chr1_4:62560093-62560112 | Msa0176260:intron | 30.0% |
| ACAATTCTTGCTAACTACAT+TGG | - | chr1_4:62560244-62560263 | Msa0176260:intron | 30.0% | |
| CAATTCTTGCTAACTACATT+GGG | - | chr1_4:62560245-62560264 | Msa0176260:intron | 30.0% | |
| AAGAAGGATGAGTATATTAG+TGG | + | chr1_4:62560308-62560327 | None:intergenic | 30.0% | |
| ! | CAATTTTGCGATTCAAATTC+GGG | - | chr1_4:62560385-62560404 | Msa0176260:intron | 30.0% |
| ! | GCTTTATTGAAATAAGCTCA+AGG | + | chr1_4:62560529-62560548 | None:intergenic | 30.0% |
| ! | TCCTCTTTGATAATAGACAT+AGG | - | chr1_4:62560576-62560595 | Msa0176260:CDS | 30.0% |
| ACCTATGTCTATTATCAAAG+AGG | + | chr1_4:62560580-62560599 | None:intergenic | 30.0% | |
| ATTGAAAACTGTCCTTTCTT+TGG | + | chr1_4:62560829-62560848 | None:intergenic | 30.0% | |
| ATTGGCAAAATGAAATCTAG+AGG | + | chr1_4:62560973-62560992 | None:intergenic | 30.0% | |
| ! | TCTAGATTTCATTTTGCCAA+TGG | - | chr1_4:62560972-62560991 | Msa0176260:CDS | 30.0% |
| CAAACAAGGCATAATCTATT+GGG | - | chr1_4:62561023-62561042 | Msa0176260:CDS | 30.0% | |
| TATTGGGTGAATACATTGAT+TGG | - | chr1_4:62561039-62561058 | Msa0176260:CDS | 30.0% | |
| !!! | TCCTCAATTTTAGTTGTGAT+AGG | - | chr1_4:62561069-62561088 | Msa0176260:exon | 30.0% |
| !!! | CCTCAATTTTAGTTGTGATA+GGG | - | chr1_4:62561070-62561089 | Msa0176260:exon | 30.0% |
| !!! | CTCAATTTTAGTTGTGATAG+GGG | - | chr1_4:62561071-62561090 | Msa0176260:exon | 30.0% |
| !!! | TCAATTTTAGTTGTGATAGG+GGG | - | chr1_4:62561072-62561091 | Msa0176260:exon | 30.0% |
| ! | AATGGAAGTGTAAGAATCAC+TGG | + | chr1_4:62558306-62558325 | None:intergenic | 35.0% |
| CCCAGAAGAGTAAATGAAAA+TGG | + | chr1_4:62558324-62558343 | None:intergenic | 35.0% | |
| TTTCATTTACTCTTCTGGGT+TGG | - | chr1_4:62558325-62558344 | Msa0176260:intron | 35.0% | |
| TATCTCTGAATCTAAACTGC+CGG | + | chr1_4:62558449-62558468 | None:intergenic | 35.0% | |
| GCAGTTTAGATTCAGAGATA+TGG | - | chr1_4:62558449-62558468 | Msa0176260:intron | 35.0% | |
| TAATCATTGGACCATTGTTG+AGG | - | chr1_4:62558543-62558562 | Msa0176260:intron | 35.0% | |
| ! | GACTAAATTGGTGATTCACT+CGG | + | chr1_4:62558668-62558687 | None:intergenic | 35.0% |
| !!! | ATATGTTTTGGGACAGTGAT+TGG | - | chr1_4:62559053-62559072 | Msa0176260:intron | 35.0% |
| TAAAGCTTCATTGATCCTTC+TGG | + | chr1_4:62559241-62559260 | None:intergenic | 35.0% | |
| ! | TGGAGTTGTAACTATGCTTT+TGG | - | chr1_4:62559279-62559298 | Msa0176260:intron | 35.0% |
| AATGTATCTCAAGGAGTGAA+AGG | + | chr1_4:62559317-62559336 | None:intergenic | 35.0% | |
| TATGCAATATTTCTCACCGT+CGG | - | chr1_4:62559367-62559386 | Msa0176260:intron | 35.0% | |
| ! | CCTTTTACAGAATACTCTCT+CGG | + | chr1_4:62559524-62559543 | None:intergenic | 35.0% |
| !! | AAACTGTTTGGTGTCTTCAA+TGG | - | chr1_4:62559557-62559576 | Msa0176260:intron | 35.0% |
| AATAATCCCACTAGCATATG+TGG | + | chr1_4:62559600-62559619 | None:intergenic | 35.0% | |
| TGGGATTATTCCAGAAATAC+AGG | - | chr1_4:62559610-62559629 | Msa0176260:intron | 35.0% | |
| GCAAAACTAACCTGTATTTC+TGG | + | chr1_4:62559623-62559642 | None:intergenic | 35.0% | |
| GAAGACAAAATTCAGTCTAG+AGG | + | chr1_4:62559922-62559941 | None:intergenic | 35.0% | |
| TGATTCTGGATATGTACGTT+TGG | + | chr1_4:62559958-62559977 | None:intergenic | 35.0% | |
| AATAATTGTGGTTGGATCTG+CGG | + | chr1_4:62559991-62560010 | None:intergenic | 35.0% | |
| CACAACGAAATAATTGTGGT+TGG | + | chr1_4:62559999-62560018 | None:intergenic | 35.0% | |
| CTGTCACAACGAAATAATTG+TGG | + | chr1_4:62560003-62560022 | None:intergenic | 35.0% | |
| ! | TGCAATTTTGTAGGCAACTT+TGG | - | chr1_4:62560102-62560121 | Msa0176260:intron | 35.0% |
| ! | TTGAACATTTTTCCCTTCAC+AGG | + | chr1_4:62560133-62560152 | None:intergenic | 35.0% |
| GTGAAGGGAAAAATGTTCAA+AGG | - | chr1_4:62560133-62560152 | Msa0176260:intron | 35.0% | |
| ! | TATTTCAGTGTTGCTATCTC+TGG | - | chr1_4:62560190-62560209 | Msa0176260:intron | 35.0% |
| TGTTGCTATCTCTGGTTATT+GGG | - | chr1_4:62560198-62560217 | Msa0176260:intron | 35.0% | |
| CAAAACTATTGCTTCCCAAA+TGG | - | chr1_4:62560272-62560291 | Msa0176260:intron | 35.0% | |
| GTGGTCAAGAAAAACCATTT+GGG | + | chr1_4:62560289-62560308 | None:intergenic | 35.0% | |
| AGTGGTCAAGAAAAACCATT+TGG | + | chr1_4:62560290-62560309 | None:intergenic | 35.0% | |
| ! | ATTTTCGGAGATCCAAAGAA+AGG | - | chr1_4:62560814-62560833 | Msa0176260:intron | 35.0% |
| GCCATTCTTTCCAGATATAA+TGG | - | chr1_4:62560921-62560940 | Msa0176260:CDS | 35.0% | |
| GCCATTATATCTGGAAAGAA+TGG | + | chr1_4:62560925-62560944 | None:intergenic | 35.0% | |
| CCAAACAATGCCATTATATC+TGG | + | chr1_4:62560934-62560953 | None:intergenic | 35.0% | |
| CCAGATATAATGGCATTGTT+TGG | - | chr1_4:62560931-62560950 | Msa0176260:CDS | 35.0% | |
| ACTTTCAAACCTTCCAAACA+AGG | - | chr1_4:62561009-62561028 | Msa0176260:CDS | 35.0% | |
| !! | TAGATTATGCCTTGTTTGGA+AGG | + | chr1_4:62561021-62561040 | None:intergenic | 35.0% |
| ! | CCAATAGATTATGCCTTGTT+TGG | + | chr1_4:62561025-62561044 | None:intergenic | 35.0% |
| CCAAACAAGGCATAATCTAT+TGG | - | chr1_4:62561022-62561041 | Msa0176260:CDS | 35.0% | |
| ! | TGAATACATTGATTGGAGGA+GGG | - | chr1_4:62561046-62561065 | Msa0176260:CDS | 35.0% |
| CCCTATCACAACTAAAATTG+AGG | + | chr1_4:62561073-62561092 | None:intergenic | 35.0% | |
| ATCTAACTCAGGTGAAGTAG+AGG | + | chr1_4:62558101-62558120 | None:intergenic | 40.0% | |
| !! | TTTACTCTTCTGGGTTGGTT+TGG | - | chr1_4:62558330-62558349 | Msa0176260:intron | 40.0% |
| !! | GTTGGTTTGGAGGAGTAATT+TGG | - | chr1_4:62558343-62558362 | Msa0176260:intron | 40.0% |
| GTTTGGAGGAGTAATTTGGT+TGG | - | chr1_4:62558347-62558366 | Msa0176260:intron | 40.0% | |
| !! | TGATGCGTTGCTTTGTTTGT+TGG | - | chr1_4:62558897-62558916 | Msa0176260:CDS | 40.0% |
| !! | GTTGCTTTGTTTGTTGGACA+CGG | - | chr1_4:62558903-62558922 | Msa0176260:CDS | 40.0% |
| !! | TGTTTCGAACCTTTGAAGCA+CGG | + | chr1_4:62558959-62558978 | None:intergenic | 40.0% |
| TTGCTTGAAAATGTTGTGGC+AGG | - | chr1_4:62558987-62559006 | Msa0176260:intron | 40.0% | |
| TACCAACTTTACCATCCAGA+AGG | - | chr1_4:62559223-62559242 | Msa0176260:intron | 40.0% | |
| ATCCTTCTGGATGGTAAAGT+TGG | + | chr1_4:62559228-62559247 | None:intergenic | 40.0% | |
| TATCTCAAGGAGTGAAAGGA+TGG | + | chr1_4:62559313-62559332 | None:intergenic | 40.0% | |
| TTGATTGCATGATCCAATGC+AGG | - | chr1_4:62559479-62559498 | Msa0176260:CDS | 40.0% | |
| TTTACAGAATACTCTCTCGG+CGG | + | chr1_4:62559521-62559540 | None:intergenic | 40.0% | |
| !! | CCGAGAGAGTATTCTGTAAA+AGG | - | chr1_4:62559521-62559540 | Msa0176260:CDS | 40.0% |
| ATTGCTACCACATATGCTAG+TGG | - | chr1_4:62559590-62559609 | Msa0176260:intron | 40.0% | |
| TTGCTACCACATATGCTAGT+GGG | - | chr1_4:62559591-62559610 | Msa0176260:intron | 40.0% | |
| GAAGGCAAAATCAGTTCTAC+TGG | + | chr1_4:62559772-62559791 | None:intergenic | 40.0% | |
| !! | TGTACGTTTGGTTCCACTTT+TGG | + | chr1_4:62559946-62559965 | None:intergenic | 40.0% |
| AGTCACTTGACATGTGCATT+TGG | + | chr1_4:62560064-62560083 | None:intergenic | 40.0% | |
| ! | AACATTTTTCCCTTCACAGG+AGG | + | chr1_4:62560130-62560149 | None:intergenic | 40.0% |
| ! | GTGTTGCTATCTCTGGTTAT+TGG | - | chr1_4:62560197-62560216 | Msa0176260:intron | 40.0% |
| ATCTCTGGTTATTGGGCATT+TGG | - | chr1_4:62560205-62560224 | Msa0176260:intron | 40.0% | |
| CTCATCCTTCTTCAAGTCTT+CGG | - | chr1_4:62560316-62560335 | Msa0176260:intron | 40.0% | |
| TCAATCCGAAGACTTGAAGA+AGG | + | chr1_4:62560324-62560343 | None:intergenic | 40.0% | |
| CAACATTGCTGCAAAAAGTG+TGG | + | chr1_4:62560902-62560921 | None:intergenic | 40.0% | |
| ! | TGGGTGAATACATTGATTGG+AGG | - | chr1_4:62561042-62561061 | Msa0176260:CDS | 40.0% |
| ! | GTGAATACATTGATTGGAGG+AGG | - | chr1_4:62561045-62561064 | Msa0176260:CDS | 40.0% |
| ACTTCACCTGAGTTAGATGC+AGG | - | chr1_4:62558103-62558122 | Msa0176260:CDS | 45.0% | |
| TTTGCTCCTGCATCTAACTC+AGG | + | chr1_4:62558112-62558131 | None:intergenic | 45.0% | |
| GTAGGATCATGGTTACACTG+TGG | - | chr1_4:62558252-62558271 | Msa0176260:intron | 45.0% | |
| ! | GTAATTTGGTTGGTCCTTGC+AGG | - | chr1_4:62558357-62558376 | Msa0176260:intron | 45.0% |
| AGAATGTGATCACTCCTGCA+AGG | + | chr1_4:62558374-62558393 | None:intergenic | 45.0% | |
| TTGGAACATCATGCTCAGCT+TGG | - | chr1_4:62558420-62558439 | Msa0176260:intron | 45.0% | |
| GTGATTCACTCGGTTCAATC+AGG | + | chr1_4:62558658-62558677 | None:intergenic | 45.0% | |
| ! | TTGTTTGTTGGACACGGACA+TGG | - | chr1_4:62558909-62558928 | Msa0176260:intron | 45.0% |
| !!! | TGTTTTGGGACAGTGATTGG+TGG | - | chr1_4:62559056-62559075 | Msa0176260:intron | 45.0% |
| GCTTCATTGATCCTTCTGGA+TGG | + | chr1_4:62559237-62559256 | None:intergenic | 45.0% | |
| ! | ATCTTTCGAGTGACCTGCAT+TGG | + | chr1_4:62559495-62559514 | None:intergenic | 45.0% |
| ! | GCGGTGACAAAAACTGATTC+TGG | + | chr1_4:62559972-62559991 | None:intergenic | 45.0% |
| TGGGCATTTGGAAATGCATC+TGG | - | chr1_4:62560217-62560236 | Msa0176260:intron | 45.0% | |
| TCAAGTCTTCGGATTGACTG+CGG | - | chr1_4:62560327-62560346 | Msa0176260:intron | 45.0% | |
| TTGCGATTCAAATTCGGGTG+CGG | - | chr1_4:62560390-62560409 | Msa0176260:intron | 45.0% | |
| AATGCGCAATGTTGTGCCAA+GGG | - | chr1_4:62560846-62560865 | Msa0176260:intron | 45.0% | |
| !! | ATTGATCTAGAGAGCACCCT+TGG | + | chr1_4:62560865-62560884 | None:intergenic | 45.0% |
| !! | ACTCTTCTGGGTTGGTTTGG+AGG | - | chr1_4:62558333-62558352 | Msa0176260:intron | 50.0% |
| CTTGCGCTAGACCTCAACAA+TGG | + | chr1_4:62558557-62558576 | None:intergenic | 50.0% | |
| TTGTTGAGGTCTAGCGCAAG+TGG | - | chr1_4:62558557-62558576 | Msa0176260:intron | 50.0% | |
| !! | ACGGACACCTCTGGAATTAG+GGG | + | chr1_4:62558940-62558959 | None:intergenic | 50.0% |
| !! | CACGGACACCTCTGGAATTA+GGG | + | chr1_4:62558941-62558960 | None:intergenic | 50.0% |
| ATGTTGTGGCAGGACCAAGA+TGG | - | chr1_4:62558997-62559016 | Msa0176260:intron | 50.0% | |
| TGTTGTGGCAGGACCAAGAT+GGG | - | chr1_4:62558998-62559017 | Msa0176260:intron | 50.0% | |
| ! | AGTGATTGGTGGTCCTCTTG+TGG | - | chr1_4:62559067-62559086 | Msa0176260:intron | 50.0% |
| ! | GTGATTGGTGGTCCTCTTGT+GGG | - | chr1_4:62559068-62559087 | Msa0176260:intron | 50.0% |
| AGACTCTTTCCTCCCACAAG+AGG | + | chr1_4:62559083-62559102 | None:intergenic | 50.0% | |
| TGTGGGAGGAAAGAGTCTCA+AGG | - | chr1_4:62559085-62559104 | Msa0176260:intron | 50.0% | |
| AACTTTGGCACCTCCTGTGA+AGG | - | chr1_4:62560117-62560136 | Msa0176260:intron | 50.0% | |
| ACTTTGGCACCTCCTGTGAA+GGG | - | chr1_4:62560118-62560137 | Msa0176260:intron | 50.0% | |
| TGCGATTCAAATTCGGGTGC+GGG | - | chr1_4:62560391-62560410 | Msa0176260:intron | 50.0% | |
| CAATGCGCAATGTTGTGCCA+AGG | - | chr1_4:62560845-62560864 | Msa0176260:intron | 50.0% | |
| ATCATGCTCAGCTTGGTCGC+CGG | - | chr1_4:62558427-62558446 | Msa0176260:intron | 55.0% | |
| TGAGGTCTAGCGCAAGTGGT+TGG | - | chr1_4:62558561-62558580 | Msa0176260:intron | 55.0% | |
| !! | GCACGGACACCTCTGGAATT+AGG | + | chr1_4:62558942-62558961 | None:intergenic | 55.0% |
| !! | CTTTGAAGCACGGACACCTC+TGG | + | chr1_4:62558949-62558968 | None:intergenic | 55.0% |
| !! | CAGAGGTGTCCGTGCTTCAA+AGG | - | chr1_4:62558947-62558966 | Msa0176260:intron | 55.0% |
| ! | ATTGGTGGTCCTCTTGTGGG+AGG | - | chr1_4:62559071-62559090 | Msa0176260:intron | 55.0% |
| !! | ACCGTCGGCTCGATATACGT+CGG | - | chr1_4:62559382-62559401 | Msa0176260:intron | 55.0% |
| ACCGACGTATATCGAGCCGA+CGG | + | chr1_4:62559386-62559405 | None:intergenic | 55.0% | |
| CGGCTCGATATACGTCGGTA+AGG | - | chr1_4:62559387-62559406 | Msa0176260:intron | 55.0% | |
| GGCGACACCCCTAATTCCAG+AGG | - | chr1_4:62558930-62558949 | Msa0176260:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 62557811 | 62561230 | 62557811 | ID=Msa0176260;Name=Msa0176260 |
| chr1_4 | mRNA | 62557811 | 62561230 | 62557811 | ID=Msa0176260-mRNA-1;Parent=Msa0176260;Name=Msa0176260-mRNA-1;_AED=0.07;_eAED=0.07;_QI=157|1|1|1|1|1|7|72|481 |
| chr1_4 | exon | 62557811 | 62558263 | 62557811 | ID=Msa0176260-mRNA-1:exon:20149;Parent=Msa0176260-mRNA-1 |
| chr1_4 | exon | 62558693 | 62558926 | 62558693 | ID=Msa0176260-mRNA-1:exon:20148;Parent=Msa0176260-mRNA-1 |
| chr1_4 | exon | 62559410 | 62559540 | 62559410 | ID=Msa0176260-mRNA-1:exon:20147;Parent=Msa0176260-mRNA-1 |
| chr1_4 | exon | 62559638 | 62559824 | 62559638 | ID=Msa0176260-mRNA-1:exon:20146;Parent=Msa0176260-mRNA-1 |
| chr1_4 | exon | 62559935 | 62560032 | 62559935 | ID=Msa0176260-mRNA-1:exon:20145;Parent=Msa0176260-mRNA-1 |
| chr1_4 | exon | 62560555 | 62560785 | 62560555 | ID=Msa0176260-mRNA-1:exon:20144;Parent=Msa0176260-mRNA-1 |
| chr1_4 | exon | 62560890 | 62561230 | 62560890 | ID=Msa0176260-mRNA-1:exon:20143;Parent=Msa0176260-mRNA-1 |
| chr1_4 | five_prime_UTR | 62561074 | 62561230 | 62561074 | ID=Msa0176260-mRNA-1:five_prime_utr;Parent=Msa0176260-mRNA-1 |
| chr1_4 | CDS | 62560890 | 62561073 | 62560890 | ID=Msa0176260-mRNA-1:cds;Parent=Msa0176260-mRNA-1 |
| chr1_4 | CDS | 62560555 | 62560785 | 62560555 | ID=Msa0176260-mRNA-1:cds;Parent=Msa0176260-mRNA-1 |
| chr1_4 | CDS | 62559935 | 62560032 | 62559935 | ID=Msa0176260-mRNA-1:cds;Parent=Msa0176260-mRNA-1 |
| chr1_4 | CDS | 62559638 | 62559824 | 62559638 | ID=Msa0176260-mRNA-1:cds;Parent=Msa0176260-mRNA-1 |
| chr1_4 | CDS | 62559410 | 62559540 | 62559410 | ID=Msa0176260-mRNA-1:cds;Parent=Msa0176260-mRNA-1 |
| chr1_4 | CDS | 62558693 | 62558926 | 62558693 | ID=Msa0176260-mRNA-1:cds;Parent=Msa0176260-mRNA-1 |
| chr1_4 | CDS | 62557883 | 62558263 | 62557883 | ID=Msa0176260-mRNA-1:cds;Parent=Msa0176260-mRNA-1 |
| chr1_4 | three_prime_UTR | 62557811 | 62557882 | 62557811 | ID=Msa0176260-mRNA-1:three_prime_utr;Parent=Msa0176260-mRNA-1 |
| Gene Sequence |
| Protein sequence |
