AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0961560

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0961560 MtrunA17_Chr6g0481041 97.665 728 15 2 1 726 1 728 0.0 1486
Msa0961560 MtrunA17_Chr8g0350321 48.966 725 331 10 20 725 106 810 0.0 679
Msa0961560 MtrunA17_Chr7g0246631 49.582 718 323 12 23 725 85 778 0.0 678
Msa0961560 MtrunA17_Chr4g0024351 47.340 733 347 14 2 726 33 734 0.0 662
Msa0961560 MtrunA17_Chr5g0410711 48.660 709 338 15 29 726 89 782 0.0 659
Msa0961560 MtrunA17_Chr2g0322731 48.077 728 338 14 2 722 72 766 0.0 654
Msa0961560 MtrunA17_Chr1g0203671 46.814 722 332 13 27 721 93 789 0.0 641
Msa0961560 MtrunA17_Chr7g0224451 63.800 500 113 6 18 509 3 442 0.0 631
Msa0961560 MtrunA17_Chr2g0331581 40.883 702 351 12 33 723 143 791 0.0 561
Msa0961560 MtrunA17_Chr6g0472471 42.318 716 363 15 33 721 73 765 2.20e-180 533
Msa0961560 MtrunA17_Chr7g0224481 61.893 391 87 5 18 400 3 339 1.38e-160 467
Msa0961560 MtrunA17_Chr7g0224491 66.460 322 82 7 403 724 1 296 3.64e-135 400
Msa0961560 MtrunA17_Chr5g0394111 35.235 701 345 13 36 721 40 646 1.29e-134 412
Msa0961560 MtrunA17_Chr2g0292731 42.773 512 262 11 220 721 58 548 2.60e-128 392
Msa0961560 MtrunA17_Chr2g0292741 43.333 510 257 11 220 721 50 535 8.81e-128 390
Msa0961560 MtrunA17_Chr2g0292761 33.441 622 324 19 108 721 1 540 1.68e-99 317
Msa0961560 MtrunA17_Chr5g0419821 61.194 134 51 1 17 149 21 154 1.92e-51 176
Msa0961560 MtrunA17_Chr7g0224431 54.321 162 32 2 249 410 1 120 8.12e-46 159
Msa0961560 MtrunA17_Chr7g0224461 63.077 130 35 4 595 724 1 117 7.34e-37 134
Msa0961560 MtrunA17_Chr2g0319671 40.462 173 95 3 280 452 104 268 1.50e-32 128
Msa0961560 MtrunA17_Chr2g0319681 32.231 242 142 6 485 721 1 225 6.03e-32 124
Msa0961560 MtrunA17_Chr2g0304191 44.030 134 73 2 234 366 1 133 2.40e-29 113
Msa0961560 MtrunA17_Chr2g0319701 35.270 241 126 10 489 721 5 223 5.12e-29 116
Msa0961560 MtrunA17_Chr2g0319691 40.000 115 61 3 340 452 1 109 3.96e-20 87.8
Msa0961560 MtrunA17_Chr1g0205981 29.592 196 105 6 84 269 1 173 9.29e-14 70.9
Msa0961560 MtrunA17_Chr4g0028991 30.769 182 90 6 18 163 9 190 8.23e-13 72.0
Msa0961560 MtrunA17_Chr1g0163701 83.784 37 6 0 340 376 238 274 1.02e-12 70.9
Msa0961560 MtrunA17_Chr7g0265521 38.835 103 60 1 25 124 56 158 3.26e-12 67.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0961560 AT1G73360.1 63.764 712 227 13 25 726 28 718 0.0 892
Msa0961560 AT1G17920.2 59.285 727 239 15 12 726 5 686 0.0 842
Msa0961560 AT1G17920.1 59.285 727 239 15 12 726 5 686 0.0 842
Msa0961560 AT4G04890.2 51.695 708 305 16 26 723 57 737 0.0 697
Msa0961560 AT4G04890.1 51.695 708 305 16 26 723 57 737 0.0 697
Msa0961560 AT4G21750.2 50.279 716 317 15 29 723 62 759 0.0 684
Msa0961560 AT4G21750.1 50.279 716 317 15 29 723 62 759 0.0 684
Msa0961560 AT4G21750.3 50.279 716 317 15 29 723 62 759 0.0 684
Msa0961560 AT4G21750.4 50.279 716 317 15 29 723 62 759 0.0 684
Msa0961560 AT1G05230.3 47.527 728 324 12 10 726 39 719 0.0 670
Msa0961560 AT1G05230.8 47.397 730 324 13 10 726 39 721 0.0 665
Msa0961560 AT1G05230.4 47.397 730 324 13 10 726 39 721 0.0 665
Msa0961560 AT1G05230.9 47.397 730 324 13 10 726 39 721 0.0 665
Msa0961560 AT1G05230.10 47.397 730 324 13 10 726 39 721 0.0 665
Msa0961560 AT1G05230.7 47.397 730 324 13 10 726 39 721 0.0 665
Msa0961560 AT1G05230.11 47.397 730 324 13 10 726 39 721 0.0 665
Msa0961560 AT1G05230.2 47.397 730 324 13 10 726 39 721 0.0 665
Msa0961560 AT1G05230.6 47.397 730 324 13 10 726 39 721 0.0 665
Msa0961560 AT1G05230.5 47.397 730 324 13 10 726 39 721 0.0 665
Msa0961560 AT1G05230.1 47.397 730 324 13 10 726 39 721 0.0 665
Msa0961560 AT4G00730.1 47.003 734 341 12 2 725 107 802 0.0 640
Msa0961560 AT3G61150.1 46.453 719 346 15 28 726 109 808 0.0 627
Msa0961560 AT5G46880.3 44.354 735 346 19 20 721 102 806 0.0 569
Msa0961560 AT5G46880.1 44.354 735 346 19 20 721 102 806 0.0 569
Msa0961560 AT5G46880.2 44.354 735 346 19 20 721 102 806 0.0 569
Msa0961560 AT1G05230.12 49.378 563 255 10 29 586 64 601 0.0 546
Msa0961560 AT5G52170.3 43.040 704 308 15 33 725 61 682 0.0 537
Msa0961560 AT5G52170.1 43.040 704 308 15 33 725 61 682 0.0 537
Msa0961560 AT5G52170.2 42.716 707 311 15 33 725 61 687 0.0 533
Msa0961560 AT3G03260.1 40.921 738 367 17 9 724 7 697 1.06e-179 530
Msa0961560 AT1G79840.3 38.778 704 362 17 27 721 41 684 2.87e-170 505
Msa0961560 AT1G79840.6 38.778 704 362 17 27 721 41 684 2.87e-170 505
Msa0961560 AT1G79840.1 38.778 704 362 17 27 721 99 742 1.98e-169 505
Msa0961560 AT1G79840.2 38.778 704 362 17 27 721 128 771 1.36e-168 504
Msa0961560 AT2G32370.1 39.124 731 376 18 12 726 48 725 3.06e-163 488
Msa0961560 AT5G17320.1 40.434 737 368 18 21 723 18 717 1.19e-162 486
Msa0961560 AT4G17710.1 39.518 706 324 18 29 721 88 703 6.13e-158 474
Msa0961560 AT1G34650.1 40.385 728 376 17 21 723 13 707 1.96e-155 468
Msa0961560 AT1G79840.4 40.385 572 286 16 27 588 99 625 1.85e-141 429
Msa0961560 AT4G00730.2 48.394 467 212 9 2 461 107 551 6.85e-139 420
Msa0961560 AT3G03260.2 41.516 554 296 12 9 556 7 538 4.81e-137 414
Msa0961560 AT4G25530.1 34.764 699 396 16 29 722 40 683 3.62e-127 394
Msa0961560 AT1G79840.5 40.659 455 217 13 27 472 99 509 3.20e-103 326
Msa0961560 AT5G07260.1 24.549 554 335 18 96 641 11 489 1.22e-39 154
Msa0961560 AT5G07260.2 24.368 554 331 19 96 641 11 484 3.33e-39 153
Msa0961560 AT4G26920.1 22.876 459 254 15 201 651 54 420 1.36e-19 92.8
Msa0961560 AT5G60690.1 37.121 132 56 5 18 122 7 138 6.43e-14 76.3
Msa0961560 AT1G30490.1 34.821 112 65 2 15 118 4 115 2.28e-11 67.8
Msa0961560 AT1G52150.3 21.429 462 294 17 313 722 228 672 2.72e-11 67.8
Msa0961560 AT1G52150.1 21.041 461 297 16 313 722 228 672 3.64e-11 67.4
Msa0961560 AT1G52150.2 20.996 462 297 16 313 722 228 673 4.71e-11 67.0

Find 166 sgRNAs with CRISPR-Local

Find 281 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGCTTTGGTTGAAATGTTTA+TGG 0.134213 6_3:-83559882 Msa0961560:CDS
GTAAACTACTAACCATTATT+TGG 0.141492 6_3:+83557721 None:intergenic
GACTTATCAATGGGAAATTT+TGG 0.144806 6_3:-83560235 Msa0961560:CDS
CGCAAATTGAGCAAGGTTTA+TGG 0.148416 6_3:-83559456 Msa0961560:CDS
CTCCTAGACAGATCAAATTT+TGG 0.209657 6_3:-83561557 Msa0961560:CDS
CGATGCCATCGTCTTCCTTC+TGG 0.221564 6_3:-83559376 Msa0961560:CDS
ACTATTGAAGTTATCTCTTC+TGG 0.240170 6_3:-83559728 Msa0961560:CDS
TTGCAATATGAGCAACTTCT+TGG 0.244055 6_3:+83558380 None:intergenic
TTCAACCGATTATTTGTCTT+AGG 0.246053 6_3:+83559965 None:intergenic
TAGTGGGATGTTCTTTCTAA+TGG 0.252600 6_3:-83558412 Msa0961560:CDS
GAGTCTGTTGCAACTGTTAA+TGG 0.255130 6_3:-83557678 Msa0961560:CDS
GCAACTGTTAATGGACTTAT+TGG 0.266967 6_3:-83557669 Msa0961560:CDS
AACAGTTGCATTCCAAATAA+TGG 0.273585 6_3:-83557733 Msa0961560:CDS
TTCATAGATGTTAATTCAAT+TGG 0.304841 6_3:+83557939 None:intergenic
TGAAAGGCTTGCTTGTTCTA+TGG 0.312367 6_3:-83559108 Msa0961560:CDS
ATCTATAGTGGTGCTGCATT+TGG 0.321196 6_3:-83559167 Msa0961560:CDS
CACATTCCAGTAACACCTTC+AGG 0.343396 6_3:-83557888 Msa0961560:CDS
GCAACTCCATCTCTGTGCTT+AGG 0.352073 6_3:-83558342 Msa0961560:CDS
TGCAGACTAATGAGCCTCTA+TGG 0.353256 6_3:-83560048 Msa0961560:CDS
GATTGGTCTTCCAATGTATT+TGG 0.360707 6_3:+83560300 None:intergenic
AGTGGGATGTTCTTTCTAAT+GGG 0.366936 6_3:-83558411 Msa0961560:CDS
ATGTGAGAATATAGCTATAA+GGG 0.368026 6_3:-83561027 Msa0961560:CDS
GTGAAACCTGAAGGTGTTAC+TGG 0.378283 6_3:+83557882 None:intergenic
GCAAATTGAGCAAGGTTTAT+GGG 0.381720 6_3:-83559455 Msa0961560:CDS
TTCATCATTGGACTTATCAA+TGG 0.382138 6_3:-83560245 Msa0961560:CDS
ATCGAAATTGAGGAGCAAAT+TGG 0.385407 6_3:+83559395 None:intergenic
AAGAAATTGAAAACAGTTTG+TGG 0.386401 6_3:+83558557 None:intergenic
TGCAACCTTTGTTTCTCATC+AGG 0.387813 6_3:+83561603 None:intergenic
GAAGCTTCAATGCGAATATT+CGG 0.387981 6_3:+83559938 None:intergenic
ACCAATTCACATTTCATCAT+TGG 0.388149 6_3:-83560257 Msa0961560:CDS
TGCATAGTTGATGAACTTCC+TGG 0.389675 6_3:+83560166 None:intergenic
GAGAATCAGAAGAACCTTCA+TGG 0.402346 6_3:+83561857 None:intergenic
GATGTGAGAATATAGCTATA+AGG 0.404730 6_3:-83561028 Msa0961560:CDS
CAACTCCATCTCTGTGCTTA+GGG 0.406270 6_3:-83558341 Msa0961560:intron
CACTTCCACCATTGTTCCCT+AGG 0.407591 6_3:+83557769 None:intergenic
TTTGGTGGGCATGGAATGGT+TGG 0.409505 6_3:-83560217 Msa0961560:CDS
ATTACCTTGGAGTAGCCATT+AGG 0.412515 6_3:+83559334 None:intergenic
TCTCGTGTTGTTATCATGAA+TGG 0.413589 6_3:-83559908 Msa0961560:CDS
TCCTAGTGGTTCTATGCAAC+TGG 0.418254 6_3:-83559693 Msa0961560:intron
TTTCTATAAAGCCTATGAAC+TGG 0.420383 6_3:+83559194 None:intergenic
ATGCAATGGAAGAGATGATT+AGG 0.426158 6_3:-83560075 Msa0961560:CDS
GGTGGGCATGGAATGGTTGG+AGG 0.429152 6_3:-83560214 Msa0961560:CDS
GATAACAATAACAATCTTCA+AGG 0.430765 6_3:-83557834 Msa0961560:CDS
CTGCATTTGGTGCTGAAAGA+TGG 0.431370 6_3:-83559154 Msa0961560:CDS
TTAAAGCAGCTTTGATGTGT+TGG 0.431801 6_3:+83557637 None:intergenic
CTGCTCTTTCCCTCAGGTGA+TGG 0.432769 6_3:+83558770 None:intergenic
AGTTATCTCTTCTGGAATGA+TGG 0.433595 6_3:-83559720 Msa0961560:CDS
GCGCATCAGCTAGTCATAGA+TGG 0.435956 6_3:-83558697 Msa0961560:CDS
CTTGATCTTGATCTTCTACC+AGG 0.439859 6_3:-83560184 Msa0961560:CDS
AAGAAACAATCATCATTGAT+TGG 0.440524 6_3:+83560963 None:intergenic
ATCATGCTGCTCTTTCCCTC+AGG 0.443142 6_3:+83558764 None:intergenic
GAAGTTGCTCATATTGCAAA+TGG 0.443252 6_3:-83558376 Msa0961560:CDS
AAAACAGTTTGTGGAGGGAG+AGG 0.444588 6_3:+83558566 None:intergenic
AGGGAGTCAGAGTTACTGTT+AGG 0.446651 6_3:-83558652 Msa0961560:CDS
GGTTTCACAATCACTTCTGA+TGG 0.448901 6_3:-83557867 Msa0961560:CDS
TCCAATGATGAAATGTGAAT+TGG 0.452865 6_3:+83560256 None:intergenic
TATCATGAATGGCTTAGCTT+TGG 0.453058 6_3:-83559897 Msa0961560:CDS
TCAACCGATTATTTGTCTTA+GGG 0.453573 6_3:+83559966 None:intergenic
TATAGAAATGCTATCTATAG+TGG 0.453642 6_3:-83559179 Msa0961560:CDS
GTTTCTGCCACCCGTGATCT+CGG 0.464633 6_3:-83559086 Msa0961560:CDS
ACTGGTGGAAGCTGTGTGAT+TGG 0.466182 6_3:+83560283 None:intergenic
CACACTTTCAGCTTTGAATG+AGG 0.466242 6_3:-83558672 Msa0961560:CDS
GAAAGCTGTGTGGACTCATC+AGG 0.466364 6_3:-83557981 Msa0961560:CDS
TTCATTCAAGACATGCCTAA+TGG 0.467119 6_3:-83559349 Msa0961560:CDS
TCATCATTGGACTTATCAAT+GGG 0.471502 6_3:-83560244 Msa0961560:CDS
GGTCACTTGGATTGAACACT+TGG 0.486015 6_3:-83559234 Msa0961560:CDS
GAAAGGCAAGCTGGTTGGTA+AGG 0.487355 6_3:+83560136 None:intergenic
GTTAAGCAGAGAATTAGCTT+TGG 0.491594 6_3:-83561580 Msa0961560:CDS
AAGATGTAGAATTCTCTGAT+AGG 0.493505 6_3:+83559490 None:intergenic
CTAGGGAACAATGGTGGAAG+TGG 0.494985 6_3:-83557768 Msa0961560:CDS
ACCAGCTTGCCTTTCTGACA+TGG 0.500844 6_3:-83560128 Msa0961560:CDS
TATGTGCAGCTACTACCATT+TGG 0.503380 6_3:-83558592 Msa0961560:CDS
GTGTTTGATTTCATCCATAG+AGG 0.504517 6_3:+83560034 None:intergenic
GCATCAACAAGCTCAAACCT+AGG 0.505348 6_3:-83557786 Msa0961560:CDS
CTTTGTTTCTCATCAGGATG+AGG 0.506519 6_3:+83561609 None:intergenic
TCAATTTCTTCAAAGATGAA+AGG 0.508178 6_3:-83558544 Msa0961560:CDS
TGTTCCCTAAGACAAATAAT+CGG 0.509693 6_3:-83559970 Msa0961560:CDS
GAAATGTGAATTGGTGCAAC+TGG 0.511399 6_3:+83560265 None:intergenic
AGTGGAGCAAGTGGGTCCCC+TGG 0.514639 6_3:-83561901 Msa0961560:CDS
GCCACCCGTGATCTCGGTGG+AGG 0.515311 6_3:-83559080 Msa0961560:intron
AATAACAATCTTCAAGGAAG+TGG 0.515892 6_3:-83557828 Msa0961560:CDS
CTTTCCTACCATTGTGACAA+TGG 0.517329 6_3:-83559756 Msa0961560:CDS
AGCACAGAGATGGAGTTGCC+AGG 0.521625 6_3:+83558346 None:intergenic
AGACGATGGCATCGAAATTG+AGG 0.523715 6_3:+83559385 None:intergenic
CACTTCAGAGGATGTGTGAA+AGG 0.529816 6_3:-83559124 Msa0961560:CDS
TCCATGTCAGAAAGGCAAGC+TGG 0.530766 6_3:+83560127 None:intergenic
TATTCGCATTGAAGCTTCGA+GGG 0.530981 6_3:-83559933 Msa0961560:CDS
CTTGCCATTGTCACAATGGT+AGG 0.533442 6_3:+83559752 None:intergenic
GAGCTGATAACTGTCAACTA+AGG 0.535625 6_3:-83561070 Msa0961560:CDS
GTTATCTCTTCTGGAATGAT+GGG 0.536912 6_3:-83559719 Msa0961560:CDS
CACAAGGGTGCAAGAGAGAG+TGG 0.542100 6_3:-83562397 Msa0961560:intron
AAGAACCTTCATGGTGATGA+TGG 0.553394 6_3:+83561866 None:intergenic
GAACAGAAGGACTCAGATGA+AGG 0.553957 6_3:-83561529 Msa0961560:intron
AGCATTGCTGCCAAATACAT+TGG 0.554442 6_3:-83560310 Msa0961560:CDS
CATTCATCATTCATAGCACA+AGG 0.556005 6_3:-83562413 Msa0961560:five_prime_UTR
GTTGTCATGAGGAAAATCAT+AGG 0.556836 6_3:+83559417 None:intergenic
ACACTTTCAGCTTTGAATGA+GGG 0.558221 6_3:-83558671 Msa0961560:CDS
AATTGAAAACAGTTTGTGGA+GGG 0.561046 6_3:+83558561 None:intergenic
TACTGTACGCAAATTGAGCA+AGG 0.562069 6_3:-83559463 Msa0961560:CDS
GCACAGAGATGGAGTTGCCA+GGG 0.562213 6_3:+83558347 None:intergenic
AGTGGTAATGTTAATGCTGA+TGG 0.563501 6_3:-83557810 Msa0961560:CDS
AGATGAAAGGAAAAGATCAC+AGG 0.565819 6_3:-83558531 Msa0961560:intron
TGATGGTGATGATGATCACC+AGG 0.567266 6_3:+83561883 None:intergenic
GTGATCTGCCCCTCTTGTGG+TGG 0.567379 6_3:-83560990 Msa0961560:CDS
GTATACCTCCACCGAGATCA+CGG 0.569764 6_3:+83559075 None:intergenic
ACCATCTGCTAAACTTAACA+TGG 0.570228 6_3:-83557700 Msa0961560:CDS
GCACATAGCACAACACCACT+AGG 0.575221 6_3:+83558608 None:intergenic
TTAATCTTGAAAACTATGAG+AGG 0.580418 6_3:-83559994 Msa0961560:CDS
TCAGCGATTCCATCACCTGA+GGG 0.581584 6_3:-83558779 Msa0961560:intron
AAATGTGCAACTCAAAGAAG+AGG 0.585426 6_3:-83560916 Msa0961560:intron
AACCAAAATTTGATCTGTCT+AGG 0.585787 6_3:+83561555 None:intergenic
GGGAACAATGGTGGAAGTGG+AGG 0.586180 6_3:-83557765 Msa0961560:CDS
CTGAAGGTGTTACTGGAATG+TGG 0.586831 6_3:+83557889 None:intergenic
ATTGCAAATGGTTCTCACCC+TGG 0.587680 6_3:-83558364 Msa0961560:CDS
TGACATTGCTTCAAATGCAA+TGG 0.587866 6_3:-83560089 Msa0961560:CDS
TCTTACCCTAAGCACAGAGA+TGG 0.590044 6_3:+83558336 None:intergenic
TCCATGTTAAGTTTAGCAGA+TGG 0.590444 6_3:+83557699 None:intergenic
CTCATTCAAAGCTGAAAGTG+TGG 0.591958 6_3:+83558673 None:intergenic
ATATTCGCATTGAAGCTTCG+AGG 0.592812 6_3:-83559934 Msa0961560:CDS
GATGAAACTAGCACAAAGGA+TGG 0.595813 6_3:-83558744 Msa0961560:CDS
TGGAGGGAGAGGTAGCCAAA+TGG 0.596344 6_3:+83558577 None:intergenic
GGAATGATGGGTAGTCCTAG+TGG 0.600560 6_3:-83559707 Msa0961560:CDS
TATACCTCCACCGAGATCAC+GGG 0.602328 6_3:+83559076 None:intergenic
GATGGCTCACTACACTTCAG+AGG 0.604262 6_3:-83559136 Msa0961560:CDS
CTCATCCTGATGAGAAACAA+AGG 0.606148 6_3:-83561608 Msa0961560:CDS
TAGGAAAGAGAGCCATCCAC+TGG 0.606397 6_3:+83559771 None:intergenic
AGTCCTTGCCATTGTCACAA+TGG 0.607736 6_3:+83559748 None:intergenic
AGCTCAAACCTAGGGAACAA+TGG 0.607766 6_3:-83557777 Msa0961560:CDS
TGTCAGAAAGGCAAGCTGGT+TGG 0.608188 6_3:+83560131 None:intergenic
GATTGGAGGACCACCACAAG+AGG 0.608794 6_3:+83560980 None:intergenic
AAACAATCATCATTGATTGG+AGG 0.609512 6_3:+83560966 None:intergenic
TGGATGAAATCAAACACTGA+TGG 0.611729 6_3:-83560028 Msa0961560:CDS
GAGTATCATAGTGGAGCAAG+TGG 0.613997 6_3:-83561910 Msa0961560:CDS
ACACTGCTAATCAGATTCAA+AGG 0.615484 6_3:-83561807 Msa0961560:CDS
CATCACCATCATCACCATGA+AGG 0.615682 6_3:-83561871 Msa0961560:CDS
TTCAGCGATTCCATCACCTG+AGG 0.619756 6_3:-83558780 Msa0961560:intron
GTTAGGAAGAGTACTGAACT+TGG 0.620703 6_3:-83558635 Msa0961560:CDS
AGAAGATCAAGATCAAGAGA+AGG 0.622073 6_3:+83560190 None:intergenic
TCTTGAATGAAGCAGCCAGA+AGG 0.622291 6_3:+83559361 None:intergenic
CTACCATTGTGACAATGGCA+AGG 0.622296 6_3:-83559751 Msa0961560:CDS
AAATTGAAAACAGTTTGTGG+AGG 0.630363 6_3:+83558560 None:intergenic
CATCAACAAGCTCAAACCTA+GGG 0.632798 6_3:-83557785 Msa0961560:CDS
AATTCTCTGATAGGAACAAG+TGG 0.634478 6_3:+83559499 None:intergenic
ATGTGAATTGGTGCAACTGG+TGG 0.640938 6_3:+83560268 None:intergenic
GGAGCAAATTGGTTGTCATG+AGG 0.644218 6_3:+83559406 None:intergenic
AATGTGATCTGCCCCTCTTG+TGG 0.645075 6_3:-83560993 Msa0961560:CDS
ATTGGAGGACCACCACAAGA+GGG 0.645788 6_3:+83560981 None:intergenic
ACCTCCACCGAGATCACGGG+TGG 0.647060 6_3:+83559079 None:intergenic
CATGCCTAATGGCTACTCCA+AGG 0.648553 6_3:-83559338 Msa0961560:intron
ACTGAACTTGGTCAGCCTAG+TGG 0.649999 6_3:-83558623 Msa0961560:CDS
GAAGTGATTGTGAAACCTGA+AGG 0.654254 6_3:+83557873 None:intergenic
GAATCTGATTAGCAGTGTGA+CGG 0.657531 6_3:+83561812 None:intergenic
TCTGCCACCCGTGATCTCGG+TGG 0.670940 6_3:-83559083 Msa0961560:CDS
TGAAGGTGTTACTGGAATGT+GGG 0.675743 6_3:+83557890 None:intergenic
TCAAACCTAGGGAACAATGG+TGG 0.694105 6_3:-83557774 Msa0961560:CDS
TTGGAGGACCACCACAAGAG+GGG 0.698087 6_3:+83560982 None:intergenic
GCATGATGAAACTAGCACAA+AGG 0.703541 6_3:-83558748 Msa0961560:CDS
AGTATCATAGTGGAGCAAGT+GGG 0.711511 6_3:-83561909 Msa0961560:CDS
TCTGATTAGCAGTGTGACGG+TGG 0.712245 6_3:+83561815 None:intergenic
AGCAGCCAGAAGGAAGACGA+TGG 0.713063 6_3:+83559371 None:intergenic
ACCAGTTGCATAGAACCACT+AGG 0.720763 6_3:+83559692 None:intergenic
TCTATGAATGTAGCAATGAG+TGG 0.727295 6_3:-83557924 Msa0961560:CDS
ATTCATCATTCATAGCACAA+GGG 0.753569 6_3:-83562412 Msa0961560:five_prime_UTR
ATGGTGATGATGATCACCAG+GGG 0.762862 6_3:+83561885 None:intergenic
GATGGTGATGATGATCACCA+GGG 0.763546 6_3:+83561884 None:intergenic
GATACTTCAAGAAAGCTGTG+TGG 0.763992 6_3:-83557991 Msa0961560:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTAAAAAAATATAAAAAAA+TGG + chr6_3:83558366-83558385 None:intergenic 0.0%
!! TTATTATTATTATAAAATTT+AGG - chr6_3:83558817-83558836 Msa0961560:intron 0.0%
!! AATGAAAAAAAATCTTATAA+TGG + chr6_3:83557789-83557808 None:intergenic 10.0%
!!! TAATTTACATATTTTTGAAA+CGG + chr6_3:83557845-83557864 None:intergenic 10.0%
!! GAAGAAAAAAAATAAAAAAT+AGG + chr6_3:83558392-83558411 None:intergenic 10.0%
!!! TAATTATGTGTTATTTTAAT+TGG - chr6_3:83558910-83558929 Msa0961560:intron 10.0%
!! TGAATAAAGTTAATAATATT+TGG + chr6_3:83559164-83559183 None:intergenic 10.0%
!! AAATATAAAACAAATAAACA+TGG + chr6_3:83559630-83559649 None:intergenic 10.0%
!!! TTAATAAAGTATTAATTCAA+AGG + chr6_3:83560735-83560754 None:intergenic 10.0%
!!! AATAAAAGTTTTTGAAAGAT+GGG + chr6_3:83558058-83558077 None:intergenic 15.0%
!!! AAATAAAAGTTTTTGAAAGA+TGG + chr6_3:83558059-83558078 None:intergenic 15.0%
!!! TGTGTATTTTATATTTATGT+TGG - chr6_3:83558712-83558731 Msa0961560:CDS 15.0%
!!! ATTTACAATGTACTTTTAAA+TGG - chr6_3:83559659-83559678 Msa0961560:intron 15.0%
!! TGAAAAAATTAATAAAATGG+AGG + chr6_3:83561736-83561755 None:intergenic 15.0%
!! GGATGAAAAAATTAATAAAA+TGG + chr6_3:83561739-83561758 None:intergenic 15.0%
!! TTAGAAACAAAATAAAAATC+CGG + chr6_3:83561948-83561967 None:intergenic 15.0%
!! AAAGAAACATGAATTAATGA+AGG - chr6_3:83558578-83558597 Msa0961560:CDS 20.0%
!!! TCAAATTGTGTATTTTTTTC+TGG - chr6_3:83558622-83558641 Msa0961560:CDS 20.0%
!! ATTATAAAATTTAGGAGAGT+TGG - chr6_3:83558825-83558844 Msa0961560:intron 20.0%
!! TTATAAAATTTAGGAGAGTT+GGG - chr6_3:83558826-83558845 Msa0961560:intron 20.0%
!!! GTTATTTTAATTGGATTTTG+TGG - chr6_3:83558919-83558938 Msa0961560:intron 20.0%
!! AAATTGAACAAAACATTTGT+AGG - chr6_3:83559324-83559343 Msa0961560:intron 20.0%
!! AATTGAACAAAACATTTGTA+GGG - chr6_3:83559325-83559344 Msa0961560:intron 20.0%
!!! AAAAAGATCGTGATTTTTAT+AGG - chr6_3:83559358-83559377 Msa0961560:CDS 20.0%
!!! TTTTAAATGGTCAATTGAAA+TGG - chr6_3:83559672-83559691 Msa0961560:intron 20.0%
!!! CACTAAAAATATTTTGACAT+CGG - chr6_3:83560380-83560399 Msa0961560:intron 20.0%
!! ATTCAATGTTGAATAGAAAT+CGG + chr6_3:83560456-83560475 None:intergenic 20.0%
!!! TTTGAAATTTTAGATGTATG+AGG - chr6_3:83560500-83560519 Msa0961560:intron 20.0%
!!! GTTAGTCTTGTATATTTTAT+AGG - chr6_3:83560784-83560803 Msa0961560:intron 20.0%
!!! TCGATCATATTTAATTTTCT+TGG - chr6_3:83561203-83561222 Msa0961560:intron 20.0%
!! ACAAAAATTTCATTCTTCTA+AGG + chr6_3:83561578-83561597 None:intergenic 20.0%
!!! TTGTTTTTTTGTTTGTTTAG+TGG - chr6_3:83561610-83561629 Msa0961560:CDS 20.0%
!!! TGTTTTTTTGTTTGTTTAGT+GGG - chr6_3:83561611-83561630 Msa0961560:CDS 20.0%
!!! CGAATATATTTTTTAGAGTA+AGG + chr6_3:83561925-83561944 None:intergenic 20.0%
!! TTCATAGATGTTAATTCAAT+TGG + chr6_3:83562103-83562122 None:intergenic 20.0%
! GAAAATGAATGAATGTGATT+TGG + chr6_3:83558006-83558025 None:intergenic 25.0%
!!! TTTTTTCTTCAGTATGTTCA+AGG - chr6_3:83558402-83558421 Msa0961560:CDS 25.0%
! ATAAAGTTTGTGTATCTTTC+TGG - chr6_3:83558751-83558770 Msa0961560:CDS 25.0%
!! TTAATTGGATTTTGTGGTTT+TGG - chr6_3:83558925-83558944 Msa0961560:intron 25.0%
! ATGTGAGAATATAGCTATAA+GGG - chr6_3:83559012-83559031 Msa0961560:intron 25.0%
! AAGAAACAATCATCATTGAT+TGG + chr6_3:83559079-83559098 None:intergenic 25.0%
!!! GTACAATTTTAGTCTCTATA+AGG - chr6_3:83559297-83559316 Msa0961560:intron 25.0%
!!! TATAAAGGATTTTAAGGTCT+CGG + chr6_3:83559569-83559588 None:intergenic 25.0%
!! CAGCAATATAAAGGATTTTA+AGG + chr6_3:83559575-83559594 None:intergenic 25.0%
! TTAATCTTGAAAACTATGAG+AGG - chr6_3:83560045-83560064 Msa0961560:CDS 25.0%
! ATTCAAAGGTTATATTACCT+TGG + chr6_3:83560721-83560740 None:intergenic 25.0%
!! TGTATATTTTATAGGTCACT+TGG - chr6_3:83560792-83560811 Msa0961560:intron 25.0%
! TATAGAAATGCTATCTATAG+TGG - chr6_3:83560860-83560879 Msa0961560:intron 25.0%
!! TTTGTTTGCATTTTATTGCA+AGG - chr6_3:83561142-83561161 Msa0961560:intron 25.0%
! AAGAAATTGAAAACAGTTTG+TGG + chr6_3:83561485-83561504 None:intergenic 25.0%
! TCAATTTCTTCAAAGATGAA+AGG - chr6_3:83561495-83561514 Msa0961560:intron 25.0%
!! ACTCTAAAAAATATATTCGC+CGG - chr6_3:83561926-83561945 Msa0961560:exon 25.0%
!! TTGTGAATTTTCGAATGTAT+AGG - chr6_3:83561997-83562016 Msa0961560:intron 25.0%
! GATAACAATAACAATCTTCA+AGG - chr6_3:83562205-83562224 Msa0961560:intron 25.0%
! GTAAACTACTAACCATTATT+TGG + chr6_3:83562321-83562340 None:intergenic 25.0%
ATTCATCATTCATAGCACAA+GGG - chr6_3:83557627-83557646 Msa0961560:CDS 30.0%
CTCATTGAAACCAAAAATCA+CGG - chr6_3:83557810-83557829 Msa0961560:CDS 30.0%
! GATATTACTACCGTGATTTT+TGG + chr6_3:83557823-83557842 None:intergenic 30.0%
ATATATCACTGCTAAATGTG+TGG - chr6_3:83557899-83557918 Msa0961560:CDS 30.0%
! GGTTGGAATAAAAGCTTTAA+GGG + chr6_3:83557985-83558004 None:intergenic 30.0%
TGGTTGGAATAAAAGCTTTA+AGG + chr6_3:83557986-83558005 None:intergenic 30.0%
!! ATGAATGAATGTGATTTGGT+TGG + chr6_3:83558002-83558021 None:intergenic 30.0%
CTTCAGAACTTGATCAAAAA+TGG - chr6_3:83558107-83558126 Msa0961560:intron 30.0%
! TCAAAAATGGAGTATCATAG+TGG - chr6_3:83558120-83558139 Msa0961560:intron 30.0%
AACCAAAATTTGATCTGTCT+AGG + chr6_3:83558487-83558506 None:intergenic 30.0%
!!! AATTTTGGTTTCAGAACAGA+AGG - chr6_3:83558497-83558516 Msa0961560:intron 30.0%
!!! GGTCTTATTAGTTTTTCTCA+TGG - chr6_3:83558599-83558618 Msa0961560:CDS 30.0%
!!! TTTTGTGGTTTTGGTTAAAC+AGG - chr6_3:83558934-83558953 Msa0961560:intron 30.0%
GATGTGAGAATATAGCTATA+AGG - chr6_3:83559011-83559030 Msa0961560:intron 30.0%
! AAACAATCATCATTGATTGG+AGG + chr6_3:83559076-83559095 None:intergenic 30.0%
! AACATTTTGCCGCAAAATAA+AGG + chr6_3:83559437-83559456 None:intergenic 30.0%
CAATTGCAACCAAAACATAA+AGG + chr6_3:83559494-83559513 None:intergenic 30.0%
TTTGGTTGCAATTGCAATTA+CGG - chr6_3:83559500-83559519 Msa0961560:CDS 30.0%
! CAAATTTTACGTAGCAAATG+TGG - chr6_3:83559525-83559544 Msa0961560:CDS 30.0%
CAATTACAGCAGCAATATAA+AGG + chr6_3:83559584-83559603 None:intergenic 30.0%
ACCAATTCACATTTCATCAT+TGG - chr6_3:83559782-83559801 Msa0961560:intron 30.0%
TCCAATGATGAAATGTGAAT+TGG + chr6_3:83559786-83559805 None:intergenic 30.0%
TTCATCATTGGACTTATCAA+TGG - chr6_3:83559794-83559813 Msa0961560:intron 30.0%
TCATCATTGGACTTATCAAT+GGG - chr6_3:83559795-83559814 Msa0961560:intron 30.0%
! GACTTATCAATGGGAAATTT+TGG - chr6_3:83559804-83559823 Msa0961560:intron 30.0%
! TTATCAATGGGAAATTTTGG+TGG - chr6_3:83559807-83559826 Msa0961560:intron 30.0%
!! TATCAATGGGAAATTTTGGT+GGG - chr6_3:83559808-83559827 Msa0961560:intron 30.0%
TGTTCCCTAAGACAAATAAT+CGG - chr6_3:83560069-83560088 Msa0961560:CDS 30.0%
TCAACCGATTATTTGTCTTA+GGG + chr6_3:83560076-83560095 None:intergenic 30.0%
TTCAACCGATTATTTGTCTT+AGG + chr6_3:83560077-83560096 None:intergenic 30.0%
! AGCTTTGGTTGAAATGTTTA+TGG - chr6_3:83560157-83560176 Msa0961560:CDS 30.0%
ACAAAAGAACAAGTACTTAC+TGG + chr6_3:83560185-83560204 None:intergenic 30.0%
ACTATTGAAGTTATCTCTTC+TGG - chr6_3:83560311-83560330 Msa0961560:CDS 30.0%
AAGATGTAGAATTCTCTGAT+AGG + chr6_3:83560552-83560571 None:intergenic 30.0%
AAGACAAAAATCCAGTTCAT+AGG - chr6_3:83560834-83560853 Msa0961560:intron 30.0%
TTTCTATAAAGCCTATGAAC+TGG + chr6_3:83560848-83560867 None:intergenic 30.0%
!!! TATAACAGTTTTAGAGACGT+CGG - chr6_3:83561048-83561067 Msa0961560:CDS 30.0%
!! CTTCTAAAACAGTTATATCG+TGG + chr6_3:83561088-83561107 None:intergenic 30.0%
TGCATATATACATATGTGCA+TGG + chr6_3:83561177-83561196 None:intergenic 30.0%
GATCTAAAAGTTGTGTATAC+CGG - chr6_3:83561231-83561250 Msa0961560:intron 30.0%
AATTGAAAACAGTTTGTGGA+GGG + chr6_3:83561481-83561500 None:intergenic 30.0%
AAATTGAAAACAGTTTGTGG+AGG + chr6_3:83561482-83561501 None:intergenic 30.0%
!!! TCATCCACTTTGTTTTCAAT+CGG - chr6_3:83561753-83561772 Msa0961560:intron 30.0%
AATAACAATCTTCAAGGAAG+TGG - chr6_3:83562211-83562230 Msa0961560:intron 30.0%
AACAGTTGCATTCCAAATAA+TGG - chr6_3:83562306-83562325 Msa0961560:intron 30.0%
CATTCATCATTCATAGCACA+AGG - chr6_3:83557626-83557645 Msa0961560:CDS 35.0%
GTTCTATAGCTATATGGCTA+TGG + chr6_3:83557959-83557978 None:intergenic 35.0%
ACACTGCTAATCAGATTCAA+AGG - chr6_3:83558232-83558251 Msa0961560:intron 35.0%
! GTTAAGCAGAGAATTAGCTT+TGG - chr6_3:83558459-83558478 Msa0961560:intron 35.0%
! CTCCTAGACAGATCAAATTT+TGG - chr6_3:83558482-83558501 Msa0961560:intron 35.0%
! CAAATAAAGCTTTGACCATG+AGG + chr6_3:83558861-83558880 None:intergenic 35.0%
AAATGTGCAACTCAAAGAAG+AGG - chr6_3:83559123-83559142 Msa0961560:CDS 35.0%
!!! TGCCGTAAACCTTTATTTTG+CGG - chr6_3:83559425-83559444 Msa0961560:CDS 35.0%
TGCCGCAAAATAAAGGTTTA+CGG + chr6_3:83559430-83559449 None:intergenic 35.0%
CCAAAACATAAAGGACTTTG+AGG + chr6_3:83559485-83559504 None:intergenic 35.0%
! CCTCAAAGTCCTTTATGTTT+TGG - chr6_3:83559482-83559501 Msa0961560:CDS 35.0%
!! GATTGGTCTTCCAATGTATT+TGG + chr6_3:83559742-83559761 None:intergenic 35.0%
AGAAGATCAAGATCAAGAGA+AGG + chr6_3:83559852-83559871 None:intergenic 35.0%
! GTGATTTTTCCATGTCAGAA+AGG + chr6_3:83559923-83559942 None:intergenic 35.0%
TGACATTGCTTCAAATGCAA+TGG - chr6_3:83559950-83559969 Msa0961560:CDS 35.0%
ATGCAATGGAAGAGATGATT+AGG - chr6_3:83559964-83559983 Msa0961560:CDS 35.0%
! GTGTTTGATTTCATCCATAG+AGG + chr6_3:83560008-83560027 None:intergenic 35.0%
TGGATGAAATCAAACACTGA+TGG - chr6_3:83560011-83560030 Msa0961560:CDS 35.0%
GAAGCTTCAATGCGAATATT+CGG + chr6_3:83560104-83560123 None:intergenic 35.0%
! TCTCGTGTTGTTATCATGAA+TGG - chr6_3:83560131-83560150 Msa0961560:CDS 35.0%
TATCATGAATGGCTTAGCTT+TGG - chr6_3:83560142-83560161 Msa0961560:CDS 35.0%
!! GATTGATTTTTCAGAACCAG+TGG - chr6_3:83560252-83560271 Msa0961560:CDS 35.0%
!! AGTTATCTCTTCTGGAATGA+TGG - chr6_3:83560319-83560338 Msa0961560:CDS 35.0%
!! GTTATCTCTTCTGGAATGAT+GGG - chr6_3:83560320-83560339 Msa0961560:CDS 35.0%
AATTCTCTGATAGGAACAAG+TGG + chr6_3:83560543-83560562 None:intergenic 35.0%
GCAAATTGAGCAAGGTTTAT+GGG - chr6_3:83560584-83560603 Msa0961560:intron 35.0%
GTTGTCATGAGGAAAATCAT+AGG + chr6_3:83560625-83560644 None:intergenic 35.0%
ATCGAAATTGAGGAGCAAAT+TGG + chr6_3:83560647-83560666 None:intergenic 35.0%
TTCATTCAAGACATGCCTAA+TGG - chr6_3:83560690-83560709 Msa0961560:intron 35.0%
ATGGAATCGCTGAAAAATTC+CGG + chr6_3:83561253-83561272 None:intergenic 35.0%
!! ACACTTTCAGCTTTGAATGA+GGG - chr6_3:83561368-83561387 Msa0961560:intron 35.0%
AGATGAAAGGAAAAGATCAC+AGG - chr6_3:83561508-83561527 Msa0961560:intron 35.0%
TAGTGGGATGTTCTTTCTAA+TGG - chr6_3:83561627-83561646 Msa0961560:CDS 35.0%
AGTGGGATGTTCTTTCTAAT+GGG - chr6_3:83561628-83561647 Msa0961560:CDS 35.0%
TTGCAATATGAGCAACTTCT+TGG + chr6_3:83561662-83561681 None:intergenic 35.0%
GAAGTTGCTCATATTGCAAA+TGG - chr6_3:83561663-83561682 Msa0961560:intron 35.0%
TCTATGAATGTAGCAATGAG+TGG - chr6_3:83562115-83562134 Msa0961560:intron 35.0%
! AGTGGTAATGTTAATGCTGA+TGG - chr6_3:83562229-83562248 Msa0961560:intron 35.0%
ACCATCTGCTAAACTTAACA+TGG - chr6_3:83562339-83562358 Msa0961560:intron 35.0%
TCCATGTTAAGTTTAGCAGA+TGG + chr6_3:83562343-83562362 None:intergenic 35.0%
!! GCAACTGTTAATGGACTTAT+TGG - chr6_3:83562370-83562389 Msa0961560:intron 35.0%
! TTAAAGCAGCTTTGATGTGT+TGG + chr6_3:83562405-83562424 None:intergenic 35.0%
TAGCTATATGGCTATGGCTA+TGG + chr6_3:83557953-83557972 None:intergenic 40.0%
!! GGGCTAGTTCTATAGCTATA+TGG + chr6_3:83557965-83557984 None:intergenic 40.0%
! AGTATCATAGTGGAGCAAGT+GGG - chr6_3:83558130-83558149 Msa0961560:intron 40.0%
! AAGAACCTTCATGGTGATGA+TGG + chr6_3:83558176-83558195 None:intergenic 40.0%
GAGAATCAGAAGAACCTTCA+TGG + chr6_3:83558185-83558204 None:intergenic 40.0%
GAATCTGATTAGCAGTGTGA+CGG + chr6_3:83558230-83558249 None:intergenic 40.0%
! CTTTGTTTCTCATCAGGATG+AGG + chr6_3:83558433-83558452 None:intergenic 40.0%
CTCATCCTGATGAGAAACAA+AGG - chr6_3:83558431-83558450 Msa0961560:intron 40.0%
! TGCAACCTTTGTTTCTCATC+AGG + chr6_3:83558439-83558458 None:intergenic 40.0%
GAGCTGATAACTGTCAACTA+AGG - chr6_3:83558969-83558988 Msa0961560:intron 40.0%
! GGGGCAGATCACATTTTTAA+GGG + chr6_3:83559041-83559060 None:intergenic 40.0%
! AGGGGCAGATCACATTTTTA+AGG + chr6_3:83559042-83559061 None:intergenic 40.0%
AGCATTGCTGCCAAATACAT+TGG - chr6_3:83559729-83559748 Msa0961560:CDS 40.0%
GAAATGTGAATTGGTGCAAC+TGG + chr6_3:83559777-83559796 None:intergenic 40.0%
!! AAATTTTGGTGGGCATGGAA+TGG - chr6_3:83559818-83559837 Msa0961560:intron 40.0%
CTTGATCTTGATCTTCTACC+AGG - chr6_3:83559855-83559874 Msa0961560:intron 40.0%
!! TGCATAGTTGATGAACTTCC+TGG + chr6_3:83559876-83559895 None:intergenic 40.0%
ATATTCGCATTGAAGCTTCG+AGG - chr6_3:83560105-83560124 Msa0961560:CDS 40.0%
TATTCGCATTGAAGCTTCGA+GGG - chr6_3:83560106-83560125 Msa0961560:CDS 40.0%
!! GATTTTTCAGAACCAGTGGA+TGG - chr6_3:83560256-83560275 Msa0961560:CDS 40.0%
CTTTCCTACCATTGTGACAA+TGG - chr6_3:83560283-83560302 Msa0961560:CDS 40.0%
TACTGTACGCAAATTGAGCA+AGG - chr6_3:83560576-83560595 Msa0961560:intron 40.0%
CGCAAATTGAGCAAGGTTTA+TGG - chr6_3:83560583-83560602 Msa0961560:intron 40.0%
ATTACCTTGGAGTAGCCATT+AGG + chr6_3:83560708-83560727 None:intergenic 40.0%
!! ATCTATAGTGGTGCTGCATT+TGG - chr6_3:83560872-83560891 Msa0961560:intron 40.0%
! TGAAAGGCTTGCTTGTTCTA+TGG - chr6_3:83560931-83560950 Msa0961560:CDS 40.0%
AAGTCTAAGCAATGCAATCG+TGG - chr6_3:83561105-83561124 Msa0961560:intron 40.0%
GCATGATGAAACTAGCACAA+AGG - chr6_3:83561291-83561310 Msa0961560:intron 40.0%
GATGAAACTAGCACAAAGGA+TGG - chr6_3:83561295-83561314 Msa0961560:intron 40.0%
CTCATTCAAAGCTGAAAGTG+TGG + chr6_3:83561369-83561388 None:intergenic 40.0%
!! CACACTTTCAGCTTTGAATG+AGG - chr6_3:83561367-83561386 Msa0961560:intron 40.0%
!! GTTAGGAAGAGTACTGAACT+TGG - chr6_3:83561404-83561423 Msa0961560:intron 40.0%
TATGTGCAGCTACTACCATT+TGG - chr6_3:83561447-83561466 Msa0961560:intron 40.0%
! CTCACCGATTGAAAACAAAG+TGG + chr6_3:83561760-83561779 None:intergenic 40.0%
!!! CTTTGTTTTCAATCGGTGAG+AGG - chr6_3:83561760-83561779 Msa0961560:intron 40.0%
GTGCTAGCAGGATATGATAA+GGG + chr6_3:83561892-83561911 None:intergenic 40.0%
GATACTTCAAGAAAGCTGTG+TGG - chr6_3:83562048-83562067 Msa0961560:intron 40.0%
!! TGAAGGTGTTACTGGAATGT+GGG + chr6_3:83562152-83562171 None:intergenic 40.0%
GAAGTGATTGTGAAACCTGA+AGG + chr6_3:83562169-83562188 None:intergenic 40.0%
GGTTTCACAATCACTTCTGA+TGG - chr6_3:83562172-83562191 Msa0961560:intron 40.0%
CATCAACAAGCTCAAACCTA+GGG - chr6_3:83562254-83562273 Msa0961560:intron 40.0%
GAGTCTGTTGCAACTGTTAA+TGG - chr6_3:83562361-83562380 Msa0961560:intron 40.0%
ATGGCTATGGCATATGGCTA+TGG + chr6_3:83557940-83557959 None:intergenic 45.0%
ATGGCTATGGCTATGGCATA+TGG + chr6_3:83557946-83557965 None:intergenic 45.0%
! GAGTATCATAGTGGAGCAAG+TGG - chr6_3:83558129-83558148 Msa0961560:intron 45.0%
! ATGGTGATGATGATCACCAG+GGG + chr6_3:83558157-83558176 None:intergenic 45.0%
! GATGGTGATGATGATCACCA+GGG + chr6_3:83558158-83558177 None:intergenic 45.0%
! TGATGGTGATGATGATCACC+AGG + chr6_3:83558159-83558178 None:intergenic 45.0%
CATCACCATCATCACCATGA+AGG - chr6_3:83558168-83558187 Msa0961560:intron 45.0%
GAACAGAAGGACTCAGATGA+AGG - chr6_3:83558510-83558529 Msa0961560:intron 45.0%
! GCGGCAAAATGTTGTTGACT+CGG - chr6_3:83559444-83559463 Msa0961560:CDS 45.0%
ATGTGAATTGGTGCAACTGG+TGG + chr6_3:83559774-83559793 None:intergenic 45.0%
!! ATGGGAAATTTTGGTGGGCA+TGG - chr6_3:83559813-83559832 Msa0961560:intron 45.0%
TGCAGACTAATGAGCCTCTA+TGG - chr6_3:83559991-83560010 Msa0961560:CDS 45.0%
CTTGCCATTGTCACAATGGT+AGG + chr6_3:83560290-83560309 None:intergenic 45.0%
CTACCATTGTGACAATGGCA+AGG - chr6_3:83560288-83560307 Msa0961560:CDS 45.0%
AGTCCTTGCCATTGTCACAA+TGG + chr6_3:83560294-83560313 None:intergenic 45.0%
! TCCTAGTGGTTCTATGCAAC+TGG - chr6_3:83560346-83560365 Msa0961560:intron 45.0%
ACCAGTTGCATAGAACCACT+AGG + chr6_3:83560350-83560369 None:intergenic 45.0%
GGAGCAAATTGGTTGTCATG+AGG + chr6_3:83560636-83560655 None:intergenic 45.0%
! AGACGATGGCATCGAAATTG+AGG + chr6_3:83560657-83560676 None:intergenic 45.0%
TCTTGAATGAAGCAGCCAGA+AGG + chr6_3:83560681-83560700 None:intergenic 45.0%
GGTCACTTGGATTGAACACT+TGG - chr6_3:83560805-83560824 Msa0961560:intron 45.0%
!! CTGCATTTGGTGCTGAAAGA+TGG - chr6_3:83560885-83560904 Msa0961560:intron 45.0%
CACTTCAGAGGATGTGTGAA+AGG - chr6_3:83560915-83560934 Msa0961560:intron 45.0%
CAATGCAATCGTGGTTGCAT+CGG - chr6_3:83561114-83561133 Msa0961560:intron 45.0%
AGGGAGTCAGAGTTACTGTT+AGG - chr6_3:83561387-83561406 Msa0961560:intron 45.0%
AAAACAGTTTGTGGAGGGAG+AGG + chr6_3:83561476-83561495 None:intergenic 45.0%
ATTGCAAATGGTTCTCACCC+TGG - chr6_3:83561675-83561694 Msa0961560:intron 45.0%
CAACTCCATCTCTGTGCTTA+GGG - chr6_3:83561698-83561717 Msa0961560:intron 45.0%
TCTTACCCTAAGCACAGAGA+TGG + chr6_3:83561706-83561725 None:intergenic 45.0%
GCAATGATGTAATTGTGCCG+AGG + chr6_3:83561791-83561810 None:intergenic 45.0%
CGTGCTAGCAGGATATGATA+AGG + chr6_3:83561893-83561912 None:intergenic 45.0%
!! CTGAAGGTGTTACTGGAATG+TGG + chr6_3:83562153-83562172 None:intergenic 45.0%
CACATTCCAGTAACACCTTC+AGG - chr6_3:83562151-83562170 Msa0961560:intron 45.0%
!! GTGAAACCTGAAGGTGTTAC+TGG + chr6_3:83562160-83562179 None:intergenic 45.0%
GCATCAACAAGCTCAAACCT+AGG - chr6_3:83562253-83562272 Msa0961560:intron 45.0%
AGCTCAAACCTAGGGAACAA+TGG - chr6_3:83562262-83562281 Msa0961560:intron 45.0%
TCAAACCTAGGGAACAATGG+TGG - chr6_3:83562265-83562284 Msa0961560:intron 45.0%
!! AAGAAAAAAAATAAAAAATA+GGG + chr6_3:83558391-83558410 None:intergenic 5.0%
!!! TATTTTTTTATATTATTTTC+TGG - chr6_3:83558669-83558688 Msa0961560:CDS 5.0%
!!! TTAAAAAATTGTAATTTTAT+AGG + chr6_3:83559254-83559273 None:intergenic 5.0%
!! AATTAAAAATATATTTAACT+CGG - chr6_3:83559381-83559400 Msa0961560:CDS 5.0%
TCTGATTAGCAGTGTGACGG+TGG + chr6_3:83558227-83558246 None:intergenic 50.0%
GCTTTGACCATGAGGAGACT+AGG + chr6_3:83558853-83558872 None:intergenic 50.0%
AATGTGATCTGCCCCTCTTG+TGG - chr6_3:83559046-83559065 Msa0961560:intron 50.0%
ATTGGAGGACCACCACAAGA+GGG + chr6_3:83559061-83559080 None:intergenic 50.0%
ACTGGTGGAAGCTGTGTGAT+TGG + chr6_3:83559759-83559778 None:intergenic 50.0%
! TTTGGTGGGCATGGAATGGT+TGG - chr6_3:83559822-83559841 Msa0961560:intron 50.0%
! GAAAGGCAAGCTGGTTGGTA+AGG + chr6_3:83559906-83559925 None:intergenic 50.0%
TGTCAGAAAGGCAAGCTGGT+TGG + chr6_3:83559911-83559930 None:intergenic 50.0%
ACCAGCTTGCCTTTCTGACA+TGG - chr6_3:83559911-83559930 Msa0961560:CDS 50.0%
TCCATGTCAGAAAGGCAAGC+TGG + chr6_3:83559915-83559934 None:intergenic 50.0%
TAGGAAAGAGAGCCATCCAC+TGG + chr6_3:83560271-83560290 None:intergenic 50.0%
!! GGAATGATGGGTAGTCCTAG+TGG - chr6_3:83560332-83560351 Msa0961560:intron 50.0%
CATGCCTAATGGCTACTCCA+AGG - chr6_3:83560701-83560720 Msa0961560:intron 50.0%
GATGGCTCACTACACTTCAG+AGG - chr6_3:83560903-83560922 Msa0961560:intron 50.0%
TATACCTCCACCGAGATCAC+GGG + chr6_3:83560966-83560985 None:intergenic 50.0%
GTATACCTCCACCGAGATCA+CGG + chr6_3:83560967-83560986 None:intergenic 50.0%
AGACGTCGGCAACATGATTG+TGG - chr6_3:83561062-83561081 Msa0961560:CDS 50.0%
TTCAGCGATTCCATCACCTG+AGG - chr6_3:83561259-83561278 Msa0961560:intron 50.0%
TCAGCGATTCCATCACCTGA+GGG - chr6_3:83561260-83561279 Msa0961560:intron 50.0%
ATCATGCTGCTCTTTCCCTC+AGG + chr6_3:83561278-83561297 None:intergenic 50.0%
GCGCATCAGCTAGTCATAGA+TGG - chr6_3:83561342-83561361 Msa0961560:intron 50.0%
ACTGAACTTGGTCAGCCTAG+TGG - chr6_3:83561416-83561435 Msa0961560:intron 50.0%
GCACATAGCACAACACCACT+AGG + chr6_3:83561434-83561453 None:intergenic 50.0%
GCAACTCCATCTCTGTGCTT+AGG - chr6_3:83561697-83561716 Msa0961560:intron 50.0%
ATCGGTGAGAGGATGTTCCT+CGG - chr6_3:83561771-83561790 Msa0961560:intron 50.0%
GGATTTGAACTCGTGACCTC+AGG + chr6_3:83561824-83561843 None:intergenic 50.0%
GAGGTCACGAGTTCAAATCC+TGG - chr6_3:83561824-83561843 Msa0961560:CDS 50.0%
GAAAGCTGTGTGGACTCATC+AGG - chr6_3:83562058-83562077 Msa0961560:intron 50.0%
CACTTCCACCATTGTTCCCT+AGG + chr6_3:83562273-83562292 None:intergenic 50.0%
! CTAGGGAACAATGGTGGAAG+TGG - chr6_3:83562271-83562290 Msa0961560:intron 50.0%
! CACAAGGGTGCAAGAGAGAG+TGG - chr6_3:83557642-83557661 Msa0961560:CDS 55.0%
GTTGGGTCCTAGTCTCCTCA+TGG - chr6_3:83558843-83558862 Msa0961560:intron 55.0%
TTGGAGGACCACCACAAGAG+GGG + chr6_3:83559060-83559079 None:intergenic 55.0%
GATTGGAGGACCACCACAAG+AGG + chr6_3:83559062-83559081 None:intergenic 55.0%
CGATGCCATCGTCTTCCTTC+TGG - chr6_3:83560663-83560682 Msa0961560:intron 55.0%
AGCAGCCAGAAGGAAGACGA+TGG + chr6_3:83560671-83560690 None:intergenic 55.0%
GTTTCTGCCACCCGTGATCT+CGG - chr6_3:83560953-83560972 Msa0961560:CDS 55.0%
CTGCTCTTTCCCTCAGGTGA+TGG + chr6_3:83561272-83561291 None:intergenic 55.0%
TGGAGGGAGAGGTAGCCAAA+TGG + chr6_3:83561465-83561484 None:intergenic 55.0%
GCACAGAGATGGAGTTGCCA+GGG + chr6_3:83561695-83561714 None:intergenic 55.0%
AGCACAGAGATGGAGTTGCC+AGG + chr6_3:83561696-83561715 None:intergenic 55.0%
ACTCGTGACCTCAGGTCACA+AGG + chr6_3:83561816-83561835 None:intergenic 55.0%
CTAGCGGAGAGACTGTTTCC+AGG + chr6_3:83561845-83561864 None:intergenic 55.0%
GAAACAGTCTCTCCGCTAGC+AGG - chr6_3:83561846-83561865 Msa0961560:CDS 55.0%
TCTCTCCGCTAGCAGGAGTA+AGG - chr6_3:83561853-83561872 Msa0961560:CDS 55.0%
CTCAGCCTTACTCCTGCTAG+CGG + chr6_3:83561861-83561880 None:intergenic 55.0%
! GGGAACAATGGTGGAAGTGG+AGG - chr6_3:83562274-83562293 Msa0961560:intron 55.0%
GTGATCTGCCCCTCTTGTGG+TGG - chr6_3:83559049-83559068 Msa0961560:intron 60.0%
GGTGGGCATGGAATGGTTGG+AGG - chr6_3:83559825-83559844 Msa0961560:intron 60.0%
CATTGCCGCCTTGTGACCTG+AGG - chr6_3:83561805-83561824 Msa0961560:CDS 60.0%
CGTGACCTCAGGTCACAAGG+CGG + chr6_3:83561813-83561832 None:intergenic 60.0%
GGCTGAGTACACGTGCTAGC+AGG + chr6_3:83561904-83561923 None:intergenic 60.0%
AGTGGAGCAAGTGGGTCCCC+TGG - chr6_3:83558138-83558157 Msa0961560:intron 65.0%
TCTGCCACCCGTGATCTCGG+TGG - chr6_3:83560956-83560975 Msa0961560:CDS 65.0%
ACCTCCACCGAGATCACGGG+TGG + chr6_3:83560963-83560982 None:intergenic 65.0%
GCCACCCGTGATCTCGGTGG+AGG - chr6_3:83560959-83560978 Msa0961560:CDS 70.0%
Chromosome Type Strat End Strand Name
chr6_3 gene 83557620 83562441 83557620 ID=Msa0961560;Name=Msa0961560
chr6_3 mRNA 83557620 83562441 83557620 ID=Msa0961560-mRNA-1;Parent=Msa0961560;Name=Msa0961560-mRNA-1;_AED=0.05;_eAED=0.05;_QI=57|1|0.81|1|0.9|0.81|11|0|726
chr6_3 exon 83557620 83558042 83557620 ID=Msa0961560-mRNA-1:exon:14970;Parent=Msa0961560-mRNA-1
chr6_3 exon 83558342 83558431 83558342 ID=Msa0961560-mRNA-1:exon:14969;Parent=Msa0961560-mRNA-1
chr6_3 exon 83558532 83558797 83558532 ID=Msa0961560-mRNA-1:exon:14968;Parent=Msa0961560-mRNA-1
chr6_3 exon 83559081 83559255 83559081 ID=Msa0961560-mRNA-1:exon:14967;Parent=Msa0961560-mRNA-1
chr6_3 exon 83559339 83559548 83559339 ID=Msa0961560-mRNA-1:exon:14966;Parent=Msa0961560-mRNA-1
chr6_3 exon 83559694 83559795 83559694 ID=Msa0961560-mRNA-1:exon:14965;Parent=Msa0961560-mRNA-1
chr6_3 exon 83559877 83560347 83559877 ID=Msa0961560-mRNA-1:exon:14964;Parent=Msa0961560-mRNA-1
chr6_3 exon 83560917 83561105 83560917 ID=Msa0961560-mRNA-1:exon:14963;Parent=Msa0961560-mRNA-1
chr6_3 exon 83561530 83561647 83561530 ID=Msa0961560-mRNA-1:exon:14962;Parent=Msa0961560-mRNA-1
chr6_3 exon 83561799 83561948 83561799 ID=Msa0961560-mRNA-1:exon:14961;Parent=Msa0961560-mRNA-1
chr6_3 exon 83562398 83562441 83562398 ID=Msa0961560-mRNA-1:exon:14960;Parent=Msa0961560-mRNA-1
chr6_3 five_prime_UTR 83562398 83562441 83562398 ID=Msa0961560-mRNA-1:five_prime_utr;Parent=Msa0961560-mRNA-1
chr6_3 five_prime_UTR 83561936 83561948 83561936 ID=Msa0961560-mRNA-1:five_prime_utr;Parent=Msa0961560-mRNA-1
chr6_3 CDS 83561799 83561935 83561799 ID=Msa0961560-mRNA-1:cds;Parent=Msa0961560-mRNA-1
chr6_3 CDS 83561530 83561647 83561530 ID=Msa0961560-mRNA-1:cds;Parent=Msa0961560-mRNA-1
chr6_3 CDS 83560917 83561105 83560917 ID=Msa0961560-mRNA-1:cds;Parent=Msa0961560-mRNA-1
chr6_3 CDS 83559877 83560347 83559877 ID=Msa0961560-mRNA-1:cds;Parent=Msa0961560-mRNA-1
chr6_3 CDS 83559694 83559795 83559694 ID=Msa0961560-mRNA-1:cds;Parent=Msa0961560-mRNA-1
chr6_3 CDS 83559339 83559548 83559339 ID=Msa0961560-mRNA-1:cds;Parent=Msa0961560-mRNA-1
chr6_3 CDS 83559081 83559255 83559081 ID=Msa0961560-mRNA-1:cds;Parent=Msa0961560-mRNA-1
chr6_3 CDS 83558532 83558797 83558532 ID=Msa0961560-mRNA-1:cds;Parent=Msa0961560-mRNA-1
chr6_3 CDS 83558342 83558431 83558342 ID=Msa0961560-mRNA-1:cds;Parent=Msa0961560-mRNA-1
chr6_3 CDS 83557620 83558042 83557620 ID=Msa0961560-mRNA-1:cds;Parent=Msa0961560-mRNA-1
Gene Sequence

>Msa0961560

ATGGAGTATCATAGTGGAGCAAGTGGGTCCCCTGGTGATCATCATCACCATCATCACCATGAAGGTTCTTCTGATTCTCAGAGAAGAAAGAAACGTTACCACCGTCACACTGCTAATCAGATTCAAAGGCTTGAAGCTATGTTCAAGGAGTGTCCTCATCCTGATGAGAAACAAAGGTTGCAGTTAAGCAGAGAATTAGCTTTGGCTCCTAGACAGATCAAATTTTGGTTTCAGAACAGAAGGACTCAGATGAAGGCACAGCATGAAAGAGCTGATAACTGTCAACTAAGGCAAGAGAATGATAAAATAAGATGTGAGAATATAGCTATAAGGGAAGCCCTTAAAAATGTGATCTGCCCCTCTTGTGGTGGTCCTCCAATCAATGATGATTGTTTCTTTGATGAACAAAAGCTGAGAATTGAAAATGTGCAACTCAAAGAAGAGCTTGATAGAGTATCAAGCATTGCTGCCAAATACATTGGAAGACCAATCACACAGCTTCCACCAGTTGCACCAATTCACATTTCATCATTGGACTTATCAATGGGAAATTTTGGTGGGCATGGAATGGTTGGAGGACCTTCTCTTGATCTTGATCTTCTACCAGGAAGTTCATCAACTATGCAGAATATTCCTTACCAACCAGCTTGCCTTTCTGACATGGAAAAATCACTCATGTCTGACATTGCTTCAAATGCAATGGAAGAGATGATTAGGCTTCTGCAGACTAATGAGCCTCTATGGATGAAATCAAACACTGATGGTAAAGATGTTCTTAATCTTGAAAACTATGAGAGGATGTTCCCTAAGACAAATAATCGGTTGAAGAATCCGAATATTCGCATTGAAGCTTCGAGGGATTCTCGTGTTGTTATCATGAATGGCTTAGCTTTGGTTGAAATGTTTATGGATCCAAACCAGTGGATGGCTCTCTTTCCTACCATTGTGACAATGGCAAGGACTATTGAAGTTATCTCTTCTGGAATGATGGGTAGTCCTAGTGGTTCTATGCAACTGATGTATGAGGAATTGCAAATGCTGTCACCACTTGTTCCTATCAGAGAATTCTACATCTTGCGTTACTGTACGCAAATTGAGCAAGGTTTATGGGCAATTGTTGATGTTTCCTATGATTTTCCTCATGACAACCAATTTGCTCCTCAATTTCGATGCCATCGTCTTCCTTCTGGCTGCTTCATTCAAGACATGCCTAATGGCTACTCCAAGGTCACTTGGATTGAACACTTGGAGATTGAAGACAAAAATCCAGTTCATAGGCTTTATAGAAATGCTATCTATAGTGGTGCTGCATTTGGTGCTGAAAGATGGCTCACTACACTTCAGAGGATGTGTGAAAGGCTTGCTTGTTCTATGGTTTCTGCCACCCGTGATCTCGGTGGAGCGATTCCATCACCTGAGGGAAAGAGCAGCATGATGAAACTAGCACAAAGGATGGTAACTAATTTCTGTGCAAGCATAAGCGCATCAGCTAGTCATAGATGGACCACACTTTCAGCTTTGAATGAGGGAGTCAGAGTTACTGTTAGGAAGAGTACTGAACTTGGTCAGCCTAGTGGTGTTGTGCTATGTGCAGCTACTACCATTTGGCTACCTCTCCCTCCACAAACTGTTTTCAATTTCTTCAAAGATGAAAGGAAAAGATCACAGTGGGATGTTCTTTCTAATGGGAATGCTGTCCAAGAAGTTGCTCATATTGCAAATGGTTCTCACCCTGGCAACTCCATCTCTGTGCTTAGGGCTTTCAACACAAGTCAAAACAACATGTTGATACTTCAAGAAAGCTGTGTGGACTCATCAGGATCAATTGTAGTCTATTGTCCAATTGAATTAACATCTATGAATGTAGCAATGAGTGGTGAAGACACTTCCCACATTCCAGTAACACCTTCAGGTTTCACAATCACTTCTGATGGAAACACACTTGATAACAATAACAATCTTCAAGGAAGTGGTAATGTTAATGCTGATGGAGCATCAACAAGCTCAAACCTAGGGAACAATGGTGGAAGTGGAGGATCATTGATAACAGTTGCATTCCAAATAATGGTTAGTAGTTTACCATCTGCTAAACTTAACATGGAGTCTGTTGCAACTGTTAATGGACTTATTGGTGAGACTGTCCAACACATCAAAGCTGCTTTAAATTGCCCTAGTTCTTGA
Protein sequence

>Msa0961560

MEYHSGASGSPGDHHHHHHHEGSSDSQRRKKRYHRHTANQIQRLEAMFKECPHPDEKQRLQLSRELALAPRQIKFWFQNRRTQMKAQHERADNCQLRQENDKIRCENIAIREALKNVICPSCGGPPINDDCFFDEQKLRIENVQLKEELDRVSSIAAKYIGRPITQLPPVAPIHISSLDLSMGNFGGHGMVGGPSLDLDLLPGSSSTMQNIPYQPACLSDMEKSLMSDIASNAMEEMIRLLQTNEPLWMKSNTDGKDVLNLENYERMFPKTNNRLKNPNIRIEASRDSRVVIMNGLALVEMFMDPNQWMALFPTIVTMARTIEVISSGMMGSPSGSMQLMYEELQMLSPLVPIREFYILRYCTQIEQGLWAIVDVSYDFPHDNQFAPQFRCHRLPSGCFIQDMPNGYSKVTWIEHLEIEDKNPVHRLYRNAIYSGAAFGAERWLTTLQRMCERLACSMVSATRDLGGAIPSPEGKSSMMKLAQRMVTNFCASISASASHRWTTLSALNEGVRVTVRKSTELGQPSGVVLCAATTIWLPLPPQTVFNFFKDERKRSQWDVLSNGNAVQEVAHIANGSHPGNSISVLRAFNTSQNNMLILQESCVDSSGSIVVYCPIELTSMNVAMSGEDTSHIPVTPSGFTITSDGNTLDNNNNLQGSGNVNADGASTSSNLGNNGGSGGSLITVAFQIMVSSLPSAKLNMESVATVNGLIGETVQHIKAALNCPSS*