AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0385390

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0385390 MtrunA17_Chr3g0142921 95.668 277 12 0 1 277 1 277 0.0 543
Msa0385390 MtrunA17_Chr1g0156891 75.465 269 63 1 9 277 19 284 2.47e-148 420
Msa0385390 MtrunA17_Chr1g0156911 69.455 275 80 2 3 277 7 277 3.43e-135 386
Msa0385390 MtrunA17_Chr1g0156931 66.426 277 88 3 1 277 9 280 1.12e-131 377
Msa0385390 MtrunA17_Chr1g0156901 63.230 291 103 2 3 290 17 306 1.43e-131 378
Msa0385390 MtrunA17_Chr1g0156921 64.828 290 94 4 5 290 14 299 2.27e-128 369
Msa0385390 MtrunA17_Chr3g0142941 64.815 270 91 2 24 290 35 303 7.26e-124 358
Msa0385390 MtrunA17_Chr8g0371471 55.469 256 111 2 24 277 27 281 4.44e-100 297
Msa0385390 MtrunA17_Chr8g0371481 55.253 257 111 3 24 277 27 282 1.04e-99 296
Msa0385390 MtrunA17_Chr5g0405821 56.972 251 107 1 28 277 35 285 1.33e-98 294
Msa0385390 MtrunA17_Chr8g0371491 53.114 273 125 2 5 277 7 276 5.18e-98 292
Msa0385390 MtrunA17_Chr5g0405831 52.590 251 117 2 28 277 35 284 2.45e-91 275
Msa0385390 MtrunA17_Chr6g0463261 95.082 122 6 0 89 210 3 124 2.58e-79 236
Msa0385390 MtrunA17_Chr5g0438621 44.033 243 135 1 35 277 29 270 1.46e-72 227
Msa0385390 MtrunA17_Chr5g0438631 41.923 260 142 6 35 288 27 283 1.66e-69 219
Msa0385390 MtrunA17_Chr1g0157001 46.154 234 122 3 41 273 41 271 1.97e-69 219
Msa0385390 MtrunA17_Chr3g0105401 42.857 259 141 5 35 288 27 283 3.14e-67 213
Msa0385390 MtrunA17_Chr5g0438641 39.568 278 154 2 1 278 10 273 6.37e-66 210
Msa0385390 MtrunA17_Chr3g0120861 41.803 244 141 1 35 278 37 279 1.84e-64 206
Msa0385390 MtrunA17_Chr8g0341001 39.273 275 161 2 9 283 10 278 2.35e-63 203
Msa0385390 MtrunA17_Chr5g0432101 39.927 273 160 3 6 277 5 274 1.12e-62 202
Msa0385390 MtrunA17_Chr2g0320671 38.525 244 149 1 35 278 29 271 4.02e-60 195
Msa0385390 MtrunA17_Chr2g0330781 39.357 249 150 1 35 283 30 277 1.16e-59 194
Msa0385390 MtrunA17_Chr2g0283191 39.300 257 149 4 35 285 37 292 8.45e-58 189
Msa0385390 MtrunA17_Chr4g0046151 38.589 241 144 2 36 273 36 275 8.86e-58 189
Msa0385390 MtrunA17_Chr4g0027521 40.408 245 144 2 35 278 26 269 5.10e-56 184
Msa0385390 MtrunA17_Chr5g0437421 40.167 239 135 3 35 267 31 267 7.93e-52 173
Msa0385390 MtrunA17_Chr8g0380031 35.223 247 153 5 35 278 83 325 1.72e-42 150
Msa0385390 MtrunA17_Chr1g0189891 36.250 240 146 6 36 271 29 265 4.54e-41 145
Msa0385390 MtrunA17_Chr7g0275011 36.777 242 141 6 36 271 34 269 1.15e-40 144
Msa0385390 MtrunA17_Chr7g0275021 33.333 273 164 7 4 271 10 269 1.45e-40 144
Msa0385390 MtrunA17_Chr3g0086641 32.500 280 170 9 1 277 15 278 2.26e-40 144
Msa0385390 MtrunA17_Chr3g0131321 33.457 269 172 5 5 268 3 269 5.69e-40 143
Msa0385390 MtrunA17_Chr1g0182811 37.500 240 144 5 36 271 33 270 1.05e-39 142
Msa0385390 MtrunA17_Chr8g0374101 31.818 286 181 6 3 281 10 288 2.35e-39 141
Msa0385390 MtrunA17_Chr8g0380041 33.198 247 156 6 35 277 30 271 2.91e-39 140
Msa0385390 MtrunA17_Chr2g0285061 32.692 260 162 8 35 286 31 285 3.77e-39 140
Msa0385390 MtrunA17_Chr3g0077571 34.959 246 151 7 35 278 29 267 1.56e-38 139
Msa0385390 MtrunA17_Chr7g0274991 34.694 245 154 5 30 271 27 268 9.32e-38 137
Msa0385390 MtrunA17_Chr5g0434621 33.740 246 152 5 37 277 26 265 1.27e-37 136
Msa0385390 MtrunA17_Chr4g0017431 33.740 246 157 5 35 277 30 272 2.10e-37 135
Msa0385390 MtrunA17_Chr6g0457921 34.836 244 151 7 33 271 25 265 8.13e-37 134
Msa0385390 MtrunA17_Chr1g0189901 35.146 239 149 5 36 271 31 266 9.11e-37 134
Msa0385390 MtrunA17_Chr7g0229591 35.238 210 126 3 1 210 4 203 1.08e-36 130
Msa0385390 MtrunA17_Chr7g0275001 33.891 239 153 4 36 271 25 261 4.00e-36 132
Msa0385390 MtrunA17_Chr4g0008851 31.618 272 167 6 3 271 12 267 9.83e-36 131
Msa0385390 MtrunA17_Chr4g0068441 36.194 268 152 7 8 271 18 270 2.22e-35 130
Msa0385390 MtrunA17_Chr5g0396511 33.058 242 158 4 38 277 48 287 6.54e-35 129
Msa0385390 MtrunA17_Chr8g0344941 31.250 256 160 7 36 285 41 286 1.32e-34 129
Msa0385390 MtrunA17_Chr2g0294301 36.948 249 143 8 36 277 35 276 1.34e-34 128
Msa0385390 MtrunA17_Chr2g0294311 36.111 252 139 8 35 271 31 275 1.50e-34 128
Msa0385390 MtrunA17_Chr7g0215961 33.471 242 136 7 36 271 33 255 2.03e-34 127
Msa0385390 MtrunA17_Chr1g0189931 34.728 239 150 5 36 271 32 267 2.30e-34 128
Msa0385390 MtrunA17_Chr8g0344931 32.867 286 180 8 1 281 1 279 2.95e-34 127
Msa0385390 MtrunA17_Chr3g0077581 32.046 259 161 10 29 278 29 281 4.92e-34 127
Msa0385390 MtrunA17_Chr2g0284921 33.891 239 149 6 35 268 33 267 7.42e-34 126
Msa0385390 MtrunA17_Chr3g0092131 32.917 240 155 5 38 274 25 261 1.57e-33 125
Msa0385390 MtrunA17_Chr2g0284991 34.874 238 146 7 35 268 32 264 1.75e-33 125
Msa0385390 MtrunA17_Chr8g0349321 32.714 269 164 10 5 271 10 263 3.81e-32 122
Msa0385390 MtrunA17_Chr4g0060811 30.417 240 161 5 38 274 29 265 5.13e-32 121
Msa0385390 MtrunA17_Chr5g0420811 36.364 264 139 11 23 272 12 260 1.78e-31 120
Msa0385390 MtrunA17_Chr2g0285001 34.034 238 149 6 35 268 32 265 8.68e-31 118
Msa0385390 MtrunA17_Chr3g0085881 31.765 255 161 9 35 285 32 277 1.25e-30 117
Msa0385390 MtrunA17_Chr8g0349341 31.365 271 165 10 5 271 10 263 1.77e-30 117
Msa0385390 MtrunA17_Chr8g0349301 32.234 273 165 12 1 271 8 262 1.78e-30 116
Msa0385390 MtrunA17_Chr2g0284951 32.046 259 166 8 35 288 32 285 1.85e-30 117
Msa0385390 MtrunA17_Chr5g0444401 32.143 280 163 9 3 271 5 268 2.85e-30 117
Msa0385390 MtrunA17_Chr2g0301641 30.882 272 176 6 7 271 9 275 3.37e-30 117
Msa0385390 MtrunA17_Chr3g0085231 34.000 250 152 9 35 278 30 272 3.71e-30 116
Msa0385390 MtrunA17_Chr8g0370981 31.939 263 159 8 35 283 43 299 3.14e-29 115
Msa0385390 MtrunA17_Chr3g0099151 35.885 209 123 5 35 235 86 291 5.40e-28 111
Msa0385390 MtrunA17_Chr8g0370951 32.721 272 158 8 32 284 27 292 1.00e-27 110
Msa0385390 MtrunA17_Chr3g0099231 35.238 210 122 5 35 235 27 231 1.50e-27 110
Msa0385390 MtrunA17_Chr6g0469511 46.429 112 59 1 35 146 29 139 1.56e-27 103
Msa0385390 MtrunA17_Chr3g0099161 32.443 262 162 6 35 286 91 347 1.93e-27 110
Msa0385390 MtrunA17_Chr2g0284941 37.566 189 110 6 35 219 32 216 2.18e-26 106
Msa0385390 MtrunA17_Chr4g0027561 44.186 129 62 3 1 129 4 122 4.18e-26 100
Msa0385390 MtrunA17_Chr4g0027571 34.532 139 91 0 140 278 3 141 6.18e-25 99.8
Msa0385390 MtrunA17_Chr8g0349331 28.253 269 144 9 5 271 10 231 2.46e-20 89.4
Msa0385390 MtrunA17_Chr7g0254461 27.376 263 161 11 33 277 40 290 1.76e-19 87.4
Msa0385390 MtrunA17_Chr1g0160011 29.371 286 160 12 14 272 9 279 2.39e-19 87.0
Msa0385390 MtrunA17_Chr1g0198351 30.970 268 157 11 4 271 16 255 3.16e-19 86.7
Msa0385390 MtrunA17_Chr1g0159991 29.617 287 164 12 12 272 1 275 3.50e-19 86.7
Msa0385390 MtrunA17_Chr1g0178931 31.197 234 141 9 37 269 38 252 1.85e-18 84.3
Msa0385390 MtrunA17_Chr1g0160031 30.037 273 151 11 23 271 21 277 3.92e-18 83.6
Msa0385390 MtrunA17_Chr8g0381581 24.913 289 179 10 14 277 11 286 2.25e-17 81.6
Msa0385390 MtrunA17_Chr3g0112821 30.916 262 152 11 32 277 26 274 2.73e-17 80.9
Msa0385390 MtrunA17_Chr7g0273101 25.769 260 170 7 31 277 24 273 5.97e-17 80.1
Msa0385390 MtrunA17_Chr1g0198381 31.489 235 139 9 37 271 3 215 6.14e-17 79.3
Msa0385390 MtrunA17_Chr6g0450731 26.692 266 162 10 34 283 31 279 1.45e-16 79.0
Msa0385390 MtrunA17_Chr2g0321991 44.545 110 50 5 23 123 12 119 1.82e-16 74.3
Msa0385390 MtrunA17_Chr7g0266061 29.362 235 144 9 37 269 43 257 1.91e-16 78.6
Msa0385390 MtrunA17_Chr6g0455661 50.000 92 41 4 35 126 30 116 5.09e-16 77.8
Msa0385390 MtrunA17_Chr6g0455661 30.519 154 100 4 130 278 233 384 1.60e-12 67.4
Msa0385390 MtrunA17_Chr2g0283481 26.437 261 170 8 33 277 44 298 5.66e-16 77.4
Msa0385390 MtrunA17_Chr1g0178941 30.380 237 144 10 37 269 41 260 5.97e-16 77.0
Msa0385390 MtrunA17_Chr3g0093031 30.534 262 153 11 32 277 26 274 6.24e-16 77.0
Msa0385390 MtrunA17_Chr1g0191461 27.636 275 167 11 31 287 26 286 7.44e-16 77.0
Msa0385390 MtrunA17_Chr1g0159971 25.524 286 174 11 6 272 21 286 9.00e-16 77.0
Msa0385390 MtrunA17_Chr8g0370961 31.126 151 92 3 140 283 20 165 1.84e-15 74.3
Msa0385390 MtrunA17_Chr1g0189921 47.727 88 44 2 36 123 31 116 3.64e-15 71.2
Msa0385390 MtrunA17_Chr0c01g0489581 28.626 262 158 10 32 277 26 274 9.20e-15 73.6
Msa0385390 MtrunA17_Chr0c01g0489571 28.626 262 158 10 32 277 26 274 9.38e-15 73.6
Msa0385390 MtrunA17_Chr4g0018561 44.828 87 38 3 1 87 4 80 3.39e-14 67.4
Msa0385390 MtrunA17_Chr2g0283511 26.667 255 162 9 41 277 36 283 4.24e-14 72.0
Msa0385390 MtrunA17_Chr1g0159981 27.132 258 151 11 35 272 45 285 8.40e-14 70.9
Msa0385390 MtrunA17_Chr6g0450711 27.206 272 157 12 34 283 120 372 1.18e-13 70.9
Msa0385390 MtrunA17_Chr3g0104801 36.054 147 72 7 34 169 42 177 8.01e-13 65.5
Msa0385390 MtrunA17_Chr7g0229581 46.269 67 36 0 212 278 8 74 3.05e-12 63.5
Msa0385390 MtrunA17_Chr8g0352901 26.172 256 162 8 34 272 26 271 3.52e-12 66.2
Msa0385390 MtrunA17_Chr4g0027531 43.836 73 32 2 1 73 4 67 4.72e-12 60.5
Msa0385390 MtrunA17_Chr3g0096551 29.963 267 145 12 34 277 27 274 9.27e-12 65.1
Msa0385390 MtrunA17_Chr6g0469521 42.857 70 40 0 209 278 29 98 1.57e-11 61.2
Msa0385390 MtrunA17_Chr6g0459921 31.544 149 95 4 135 278 127 273 1.61e-11 63.9
Msa0385390 MtrunA17_Chr6g0450701 26.070 257 157 9 34 272 37 278 3.91e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0385390 AT1G75900.1 55.056 267 116 3 11 277 20 282 1.70e-99 296
Msa0385390 AT1G75890.2 51.273 275 131 1 3 277 17 288 5.78e-97 290
Msa0385390 AT1G75890.3 51.273 275 131 1 3 277 46 317 8.52e-97 290
Msa0385390 AT1G75880.2 52.920 274 126 2 4 277 22 292 9.35e-94 282
Msa0385390 AT1G75890.1 48.958 288 131 2 3 277 17 301 1.82e-93 281
Msa0385390 AT5G42170.1 52.549 255 117 2 24 278 38 288 2.74e-93 281
Msa0385390 AT1G75880.1 52.727 275 126 3 4 277 22 293 6.38e-92 277
Msa0385390 AT1G20120.1 51.417 247 119 1 31 277 73 318 9.64e-91 275
Msa0385390 AT3G14820.1 50.000 274 129 3 5 278 5 270 3.08e-90 272
Msa0385390 AT3G43550.1 50.570 263 118 4 10 271 11 262 2.15e-86 260
Msa0385390 AT1G20132.1 51.822 247 118 1 31 277 56 301 1.51e-84 259
Msa0385390 AT1G59406.1 51.807 249 115 3 31 278 25 269 5.59e-84 256
Msa0385390 AT1G59030.1 51.807 249 115 3 31 278 25 269 5.59e-84 256
Msa0385390 AT1G58725.1 51.807 249 115 3 31 278 25 269 5.59e-84 256
Msa0385390 AT1G58520.3 51.406 249 116 3 31 278 25 269 5.17e-82 251
Msa0385390 AT1G58525.1 51.406 249 116 3 31 278 25 269 5.17e-82 251
Msa0385390 AT3G43570.1 53.774 212 94 2 31 242 25 232 6.39e-76 234
Msa0385390 AT5G63170.1 47.154 246 125 3 33 277 25 266 2.41e-75 234
Msa0385390 AT1G20130.2 48.249 257 119 3 31 277 179 431 8.68e-75 238
Msa0385390 AT1G20130.1 48.249 257 119 3 31 277 199 451 3.57e-74 236
Msa0385390 AT1G73610.1 44.355 248 132 3 31 277 30 272 8.26e-73 227
Msa0385390 AT2G04570.1 41.852 270 149 2 9 278 8 269 1.49e-69 219
Msa0385390 AT1G23500.1 47.581 248 125 3 31 277 30 273 1.29e-67 214
Msa0385390 AT1G06990.1 41.111 270 155 3 5 271 5 273 5.22e-67 213
Msa0385390 AT1G20135.1 43.089 246 136 3 33 277 26 268 1.51e-66 211
Msa0385390 AT2G42990.1 42.520 254 145 1 23 276 15 267 3.68e-66 211
Msa0385390 AT4G26790.1 40.000 245 146 1 34 278 27 270 3.49e-63 203
Msa0385390 AT4G26790.2 40.000 245 146 1 34 278 27 270 3.49e-63 203
Msa0385390 AT2G31540.1 42.683 246 139 2 34 277 33 278 5.24e-63 202
Msa0385390 AT1G58430.1 41.264 269 149 3 11 277 17 278 6.64e-63 202
Msa0385390 AT2G30220.1 41.313 259 142 3 34 286 31 285 5.82e-62 200
Msa0385390 AT5G22810.1 41.296 247 141 2 35 278 33 278 1.23e-61 199
Msa0385390 AT1G75920.2 45.798 238 126 3 31 267 24 259 1.83e-61 198
Msa0385390 AT2G30310.1 40.377 265 148 3 23 277 13 277 1.53e-60 196
Msa0385390 AT1G75910.1 44.583 240 131 2 31 269 23 261 1.47e-59 193
Msa0385390 AT2G24560.2 39.837 246 146 2 34 277 32 277 4.27e-59 191
Msa0385390 AT5G03810.1 40.000 245 145 2 35 278 29 272 4.38e-59 192
Msa0385390 AT2G24560.1 39.837 246 146 2 34 277 32 277 2.58e-58 191
Msa0385390 AT2G40250.1 38.824 255 146 4 30 277 30 281 3.34e-58 190
Msa0385390 AT5G45960.1 38.525 244 146 2 33 273 44 286 3.95e-58 191
Msa0385390 AT3G16370.1 38.525 244 149 1 35 278 29 271 4.30e-58 190
Msa0385390 AT1G75920.1 43.083 253 126 4 31 267 19 269 2.17e-57 188
Msa0385390 AT5G03820.1 38.618 246 148 2 35 278 32 276 9.81e-56 184
Msa0385390 AT5G03820.2 38.618 246 148 2 35 278 60 304 2.22e-55 184
Msa0385390 AT3G53100.1 37.037 243 152 1 35 277 28 269 3.17e-55 182
Msa0385390 AT1G75930.1 44.770 239 125 6 31 266 24 258 6.67e-53 176
Msa0385390 AT1G75920.4 44.712 208 113 2 61 267 25 231 4.75e-51 171
Msa0385390 AT5G45950.1 34.672 274 169 4 4 271 2 271 2.61e-49 167
Msa0385390 AT1G75920.3 37.815 238 114 4 31 267 24 228 2.44e-42 148
Msa0385390 AT4G16230.1 36.111 252 147 6 4 251 5 246 1.45e-41 144
Msa0385390 AT5G08460.1 32.963 270 170 5 4 270 23 284 2.26e-41 147
Msa0385390 AT4G10950.2 34.127 252 159 6 30 277 64 312 4.61e-41 147
Msa0385390 AT4G28780.1 34.091 264 169 5 11 271 5 266 1.14e-40 145
Msa0385390 AT5G33370.2 36.000 250 148 6 25 268 19 262 2.25e-40 143
Msa0385390 AT5G33370.1 33.455 275 168 7 25 290 19 287 1.02e-39 142
Msa0385390 AT1G71691.3 34.470 264 154 10 35 289 54 307 3.41e-39 139
Msa0385390 AT5G41890.1 35.000 280 156 8 2 271 7 270 4.09e-39 141
Msa0385390 AT1G71691.2 34.470 264 154 10 35 289 54 307 1.91e-38 139
Msa0385390 AT4G10950.1 34.127 252 155 7 30 277 64 308 1.94e-38 140
Msa0385390 AT1G29670.1 34.274 248 151 8 35 277 31 271 5.74e-38 137
Msa0385390 AT5G45670.1 33.198 247 157 6 35 277 28 270 8.55e-38 137
Msa0385390 AT1G29660.1 31.716 268 165 8 5 268 10 263 1.41e-37 137
Msa0385390 AT1G29670.2 34.274 248 151 8 35 277 99 339 1.43e-37 138
Msa0385390 AT2G23540.1 33.077 260 165 6 36 288 48 305 3.98e-37 136
Msa0385390 AT3G04290.1 34.413 247 156 5 28 271 21 264 4.39e-37 135
Msa0385390 AT3G50400.1 34.728 239 148 5 33 264 31 268 6.36e-37 135
Msa0385390 AT5G18430.1 33.473 239 155 3 36 271 28 265 6.92e-37 135
Msa0385390 AT5G15720.2 35.178 253 154 8 35 281 29 277 8.40e-37 133
Msa0385390 AT5G37690.1 31.655 278 173 6 4 276 1 266 9.35e-37 134
Msa0385390 AT5G15720.1 35.178 253 154 8 35 281 29 277 2.60e-36 133
Msa0385390 AT2G19060.1 35.443 237 141 6 35 269 29 255 3.04e-36 133
Msa0385390 AT2G19010.1 36.100 241 138 9 35 271 29 257 1.22e-35 131
Msa0385390 AT2G19010.2 33.451 284 162 11 1 271 18 287 1.36e-35 132
Msa0385390 AT2G03980.2 34.400 250 148 8 33 277 40 278 2.77e-35 130
Msa0385390 AT2G03980.3 34.400 250 148 8 33 277 40 278 2.77e-35 130
Msa0385390 AT2G03980.1 34.400 250 148 8 33 277 40 278 2.77e-35 130
Msa0385390 AT2G03980.4 34.400 250 148 8 33 277 40 278 2.77e-35 130
Msa0385390 AT4G18970.1 31.923 260 166 7 35 287 27 282 4.13e-35 130
Msa0385390 AT1G33811.1 32.787 244 150 8 35 269 33 271 6.52e-35 130
Msa0385390 AT1G53920.1 29.577 284 193 6 8 290 20 297 6.75e-35 130
Msa0385390 AT4G18970.2 31.801 261 167 7 35 288 27 283 1.21e-34 130
Msa0385390 AT5G55050.1 36.948 249 142 6 32 271 35 277 2.52e-34 128
Msa0385390 AT2G19050.2 34.008 247 149 8 35 278 30 265 5.63e-34 125
Msa0385390 AT1G74460.1 32.099 243 153 6 38 274 25 261 1.15e-33 126
Msa0385390 AT2G19050.1 34.008 247 149 8 35 278 30 265 1.70e-33 125
Msa0385390 AT2G04020.1 37.238 239 123 10 17 243 25 248 6.91e-33 122
Msa0385390 AT5G37690.2 30.576 278 168 7 4 276 1 258 2.19e-32 122
Msa0385390 AT2G04020.2 37.611 226 116 9 17 232 25 235 8.12e-32 120
Msa0385390 AT1G71250.1 32.780 241 156 5 35 272 40 277 1.50e-31 120
Msa0385390 AT1G71120.1 35.931 231 134 7 35 261 30 250 1.68e-30 117
Msa0385390 AT4G30140.1 33.051 236 146 6 35 268 32 257 2.58e-29 114
Msa0385390 AT5G40990.1 31.818 242 151 7 36 271 37 270 6.11e-28 111
Msa0385390 AT1G53940.1 31.020 245 149 8 36 271 39 272 6.84e-28 109
Msa0385390 AT1G53940.2 31.325 249 143 10 36 271 39 272 2.04e-27 109
Msa0385390 AT3G14225.2 28.571 273 180 7 12 281 20 280 2.40e-27 109
Msa0385390 AT3G14225.1 28.623 276 180 7 12 281 20 284 3.92e-27 108
Msa0385390 AT1G53990.1 29.452 292 163 12 4 279 5 269 1.32e-23 99.4
Msa0385390 AT5G03610.1 31.429 245 151 8 37 281 44 271 1.25e-22 96.3
Msa0385390 AT2G31550.1 35.766 137 86 2 143 277 1 137 6.10e-21 89.4
Msa0385390 AT3G05180.1 26.568 271 169 8 34 286 34 292 4.57e-20 89.4
Msa0385390 AT1G54000.1 28.099 242 148 7 36 272 36 256 1.42e-19 88.2
Msa0385390 AT3G09930.2 30.453 243 152 9 37 278 40 266 1.57e-19 87.8
Msa0385390 AT3G09930.1 30.453 243 152 9 37 278 40 266 1.57e-19 87.8
Msa0385390 AT1G28610.2 29.213 267 146 10 36 277 31 279 1.69e-18 85.1
Msa0385390 AT1G54010.1 27.869 244 150 7 35 272 33 256 2.22e-18 84.7
Msa0385390 AT5G14450.1 27.241 290 175 10 1 271 11 283 1.30e-17 82.4
Msa0385390 AT3G26430.1 27.413 259 159 11 30 271 25 271 2.84e-17 81.6
Msa0385390 AT1G54020.2 27.737 274 170 9 23 290 18 269 3.18e-17 81.3
Msa0385390 AT1G54790.3 26.460 291 172 11 23 287 15 289 3.75e-17 81.3
Msa0385390 AT4G16220.1 48.421 95 44 3 35 129 29 118 6.75e-17 78.6
Msa0385390 AT2G27360.1 27.703 296 176 9 2 277 6 283 1.27e-16 79.7
Msa0385390 AT1G54030.2 27.049 244 152 8 32 271 47 268 4.32e-16 77.4
Msa0385390 AT1G54030.1 27.049 244 152 8 32 271 47 268 5.81e-16 77.8
Msa0385390 AT1G71691.1 27.488 211 136 8 88 289 4 206 7.62e-16 76.3
Msa0385390 AT3G14220.1 25.573 262 169 8 10 267 9 248 2.56e-15 75.9
Msa0385390 AT1G67830.1 25.993 277 173 10 34 290 28 292 4.16e-15 75.1
Msa0385390 AT5G15720.3 28.272 191 131 5 97 281 56 246 3.20e-14 72.4
Msa0385390 AT3G27950.1 26.148 283 178 10 6 274 6 271 1.72e-13 70.5
Msa0385390 AT1G28600.1 27.473 273 155 12 30 277 25 279 3.91e-13 69.3
Msa0385390 AT1G31550.1 27.273 264 161 11 33 277 33 284 5.34e-13 68.9
Msa0385390 AT1G31550.2 27.273 264 161 11 33 277 33 284 6.14e-13 68.9
Msa0385390 AT1G28610.1 30.918 207 99 9 36 212 31 223 1.84e-12 66.2
Msa0385390 AT5G03600.1 28.216 241 144 11 35 270 13 229 4.88e-12 65.9
Msa0385390 AT4G01130.2 26.996 263 158 10 34 277 32 279 5.21e-12 65.9
Msa0385390 AT5G03600.2 28.205 273 161 14 3 270 22 264 5.79e-12 65.9
Msa0385390 AT5G45910.1 27.304 293 173 14 11 277 5 283 8.48e-12 65.5
Msa0385390 AT4G01130.1 26.996 263 158 9 34 277 32 279 1.09e-11 65.1
Msa0385390 AT3G48460.1 24.483 290 179 13 10 277 13 284 4.53e-11 63.2

Find 100 sgRNAs with CRISPR-Local

Find 321 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCTGCTTCCAATTTCTTAA+AGG 0.119113 3_1:+88926154 Msa0385390:CDS
GGAATTTCTGCCGGCGTATT+TGG 0.151357 3_1:+88925734 Msa0385390:CDS
GGAGTATACCTTTAAGAAAT+TGG 0.202417 3_1:-88926162 None:intergenic
GATTTGTTTCTTCATATTAT+TGG 0.211092 3_1:+88923244 Msa0385390:CDS
TGCTTTGCATCCGGTGGTTC+CGG 0.214847 3_1:+88925795 Msa0385390:CDS
AGATCGCTAGGTTGGATATT+TGG 0.224125 3_1:-88925759 None:intergenic
CAAAATACGTACCGCAGTTT+TGG 0.248518 3_1:-88925835 None:intergenic
CTTCACATTGGATAGCAAAT+TGG 0.263085 3_1:-88927616 None:intergenic
ATTTGTTTCTTCATATTATT+GGG 0.275115 3_1:+88923245 Msa0385390:CDS
CTATCCAATGTGAAGATGTT+AGG 0.281153 3_1:+88927624 Msa0385390:three_prime_UTR
AGTTGAAGCATTGGGAATTA+AGG 0.290367 3_1:+88925713 Msa0385390:intron
TTACACAACTAAGGCTAGTT+TGG 0.309693 3_1:+88923277 Msa0385390:CDS
CAACTTAAATTCAGCTGAAA+AGG 0.329200 3_1:+88923156 Msa0385390:five_prime_UTR
GCTTTGCATCCGGTGGTTCC+GGG 0.335556 3_1:+88925796 Msa0385390:CDS
TTAAAAGGAAATATATCAAC+TGG 0.352579 3_1:+88927020 Msa0385390:intron
TCCTTGTATTGGGCAAGTTC+CGG 0.360940 3_1:-88927200 None:intergenic
CCTTTGAAATCTTTCCCATA+TGG 0.381210 3_1:-88923419 None:intergenic
TTTCCAGCAGTATTTGTGTT+TGG 0.389965 3_1:+88923329 Msa0385390:CDS
CCAACAACCGTTCTCTGAAA+TGG 0.393821 3_1:-88927090 None:intergenic
AAGGTAAACCATCCTTGTAT+TGG 0.397559 3_1:-88927211 None:intergenic
GTATTAAGTGTTCCACCAAT+TGG 0.400126 3_1:+88927060 Msa0385390:CDS
AGGAGTTGGCTTCTCTTAAC+CGG 0.406431 3_1:+88927181 Msa0385390:CDS
GAATACATAGGAAAGCTAAA+AGG 0.412985 3_1:+88925981 Msa0385390:CDS
AGGTAAACCATCCTTGTATT+GGG 0.414912 3_1:-88927210 None:intergenic
GGAAAGCTAAAAGGAATTGT+TGG 0.438571 3_1:+88925990 Msa0385390:CDS
AGTTATTTCTTACACAACTA+AGG 0.439754 3_1:+88923268 Msa0385390:CDS
CCATTTCAGAGAACGGTTGT+TGG 0.447437 3_1:+88927090 Msa0385390:CDS
TGGAGATTCAATCATGGATA+CGG 0.452846 3_1:+88923349 Msa0385390:CDS
AAAGTTCCATCAGACTATAT+AGG 0.464467 3_1:+88923473 Msa0385390:CDS
TATTAAGTGTTCCACCAATT+GGG 0.465838 3_1:+88927061 Msa0385390:CDS
CTAGGATATTCTAAAGTGTA+TGG 0.475642 3_1:+88927870 Msa0385390:three_prime_UTR
CACTAAATTATCAAAGGAGT+TGG 0.484343 3_1:+88927167 Msa0385390:CDS
TCTCCAAACACAAATACTGC+TGG 0.484675 3_1:-88923332 None:intergenic
TGAAATGGCACACACCCAAT+TGG 0.488937 3_1:-88927075 None:intergenic
TTTGAACAAATCTATTTGAC+CGG 0.492132 3_1:-88925958 None:intergenic
ACAGGTGTTTGCTTTGCATC+CGG 0.493934 3_1:+88925786 Msa0385390:CDS
TAAGGAAATATGAATGGCCT+AGG 0.493953 3_1:+88927852 Msa0385390:three_prime_UTR
CATACACTTTAGAATATCCT+AGG 0.495027 3_1:-88927869 None:intergenic
CATATTGTAGTTCTCTAAGA+TGG 0.497600 3_1:-88926100 None:intergenic
TATCCAATGTGAAGATGTTA+GGG 0.498721 3_1:+88927625 Msa0385390:three_prime_UTR
ACTGCTGGAAATGAAACATT+TGG 0.500213 3_1:-88923317 None:intergenic
TTTCAAAAGGATGCTTCGTA+AGG 0.505384 3_1:+88927834 Msa0385390:three_prime_UTR
TTCAAAGGAGGCATCCCTAC+TGG 0.506470 3_1:+88923434 Msa0385390:CDS
AACTTAAATTCAGCTGAAAA+GGG 0.508152 3_1:+88923157 Msa0385390:five_prime_UTR
CAAATCTATTTGACCGGACA+AGG 0.513180 3_1:-88925952 None:intergenic
TGATATATCAGTTGAAGCAT+TGG 0.514954 3_1:+88925704 Msa0385390:intron
CAACTGGGTGCAAGGAGGAT+AGG 0.515492 3_1:+88927036 Msa0385390:CDS
GACAAAGGATGTTGTGGCAC+AGG 0.516730 3_1:+88927566 Msa0385390:CDS
TTTCAGAGAACGGTTGTTGG+AGG 0.525737 3_1:+88927093 Msa0385390:CDS
GATATATCAGTTGAAGCATT+GGG 0.530185 3_1:+88925705 Msa0385390:intron
TGTGTTTGGAGATTCAATCA+TGG 0.530748 3_1:+88923343 Msa0385390:CDS
CAGTCAGCTATATCCTTGTC+CGG 0.530888 3_1:+88925939 Msa0385390:intron
GGGAATTAAGGAATTTCTGC+CGG 0.532610 3_1:+88925725 Msa0385390:CDS
GGAGATTCAATCATGGATAC+GGG 0.535105 3_1:+88923350 Msa0385390:CDS
TCCTTCTTACACTGACCTCA+TGG 0.539258 3_1:+88926127 Msa0385390:CDS
CAAGGAAAACACTGTTGGCT+AGG 0.539625 3_1:-88926034 None:intergenic
AAATATATCAACTGGGTGCA+AGG 0.545098 3_1:+88927028 Msa0385390:CDS
TTGTGGCACAGGAGCAGTAG+AGG 0.546163 3_1:+88927577 Msa0385390:CDS
ATTCAACACTAAATTATCAA+AGG 0.555461 3_1:+88927161 Msa0385390:CDS
TGGATCATACCCGGAACCAC+CGG 0.557250 3_1:-88925805 None:intergenic
TATGTACCTATATAGTCTGA+TGG 0.557306 3_1:-88923479 None:intergenic
AATGGCACACACCCAATTGG+TGG 0.562040 3_1:-88927072 None:intergenic
GCTTCGTAAGGAAATATGAA+TGG 0.562646 3_1:+88927846 Msa0385390:three_prime_UTR
ACCGGAACTTGCCCAATACA+AGG 0.563043 3_1:+88927199 Msa0385390:CDS
GCTAAAAGGAATTGTTGGAG+AGG 0.563345 3_1:+88925995 Msa0385390:CDS
CAACCTAGCGATCTTGTCAC+AGG 0.566337 3_1:+88925768 Msa0385390:CDS
GGATGTGAGTGGATCATACC+CGG 0.567159 3_1:-88925814 None:intergenic
CCATTGCAAAACCGACCAGT+AGG 0.568134 3_1:-88923449 None:intergenic
CTGTGACAAGATCGCTAGGT+TGG 0.568725 3_1:-88925767 None:intergenic
CTTTAAGAAATTGGAAGCAG+AGG 0.569727 3_1:-88926153 None:intergenic
ATAACATGAAAACATATGCT+AGG 0.572340 3_1:+88923384 Msa0385390:CDS
TATGAAGAAACAAATCATCA+AGG 0.572831 3_1:-88923237 None:intergenic
AACCACAAGGAAAACACTGT+TGG 0.579910 3_1:-88926039 None:intergenic
ACCATGAGGTCAGTGTAAGA+AGG 0.580211 3_1:-88926128 None:intergenic
CTAAAAGGAATTGTTGGAGA+GGG 0.582554 3_1:+88925996 Msa0385390:CDS
TAAACAACTTAATTACATGT+AGG 0.585322 3_1:+88927765 Msa0385390:three_prime_UTR
GTGTGTGCCATTTCAGAGAA+CGG 0.586756 3_1:+88927083 Msa0385390:CDS
CATTGCAAAACCGACCAGTA+GGG 0.588059 3_1:-88923448 None:intergenic
GGTGTTTGCTTTGCATCCGG+TGG 0.595182 3_1:+88925789 Msa0385390:CDS
GCTGGAAATGAAACATTTGG+TGG 0.595734 3_1:-88923314 None:intergenic
TTGTGAGGTGGCGGTTGATG+AGG 0.598629 3_1:+88927900 Msa0385390:three_prime_UTR
TAAATTCAGCTGAAAAGGGA+GGG 0.602874 3_1:+88923161 Msa0385390:five_prime_UTR
TTAAATTCAGCTGAAAAGGG+AGG 0.610663 3_1:+88923160 Msa0385390:five_prime_UTR
CCATATGGGAAAGATTTCAA+AGG 0.612170 3_1:+88923419 Msa0385390:CDS
ACACCTGTGACAAGATCGCT+AGG 0.618279 3_1:-88925771 None:intergenic
GAACTTGCCCAATACAAGGA+TGG 0.620200 3_1:+88927203 Msa0385390:CDS
TATGGGAAAGATTTCAAAGG+AGG 0.625453 3_1:+88923422 Msa0385390:CDS
GGTTATAAAGTCGTTGACAA+AGG 0.626516 3_1:+88927551 Msa0385390:intron
AGTCCCTAACATCTTCACAT+TGG 0.627021 3_1:-88927628 None:intergenic
GATTTGTTCAAAGAATACAT+AGG 0.628210 3_1:+88925969 Msa0385390:CDS
GTCGTTGACAAAGGATGTTG+TGG 0.629184 3_1:+88927560 Msa0385390:CDS
AAGGAGGCATCCCTACTGGT+CGG 0.630598 3_1:+88923438 Msa0385390:CDS
CGTTACTTCCTTGAACCACA+AGG 0.633044 3_1:-88926052 None:intergenic
TTGCTGTAAACACTCTCCGA+GGG 0.639385 3_1:-88927674 None:intergenic
ATATTTGGATCCAAATACGC+CGG 0.648403 3_1:-88925744 None:intergenic
CTTGCTGTAAACACTCTCCG+AGG 0.660448 3_1:-88927675 None:intergenic
TGGAAGCAGAGGCGACCATG+AGG 0.684097 3_1:-88926142 None:intergenic
TAAAAGGAAATATATCAACT+GGG 0.687393 3_1:+88927021 Msa0385390:intron
TATATCAACTGGGTGCAAGG+AGG 0.712465 3_1:+88927031 Msa0385390:CDS
TCCACTCACATCCAAAACTG+CGG 0.722558 3_1:+88925824 Msa0385390:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTAAAAAAATATATTATTA+TGG - chr3_1:88924501-88924520 None:intergenic 0.0%
!!! TATAATATTTTGAATTTTTC+TGG - chr3_1:88924146-88924165 None:intergenic 10.0%
!!! AAAAAATTCTGAATTTTTTT+TGG - chr3_1:88924178-88924197 None:intergenic 10.0%
!!! ATGAATTTTTATATGTTTTA+AGG + chr3_1:88924217-88924236 Msa0385390:intron 10.0%
!! AAAAAATATATTATTATGGT+TGG - chr3_1:88924497-88924516 None:intergenic 10.0%
!!! AAAAAAAAAGTATAAATGAA+AGG - chr3_1:88926269-88926288 None:intergenic 10.0%
!!! ATAATTTTTAAAAACTTCAT+AGG + chr3_1:88926334-88926353 Msa0385390:intron 10.0%
!! ATTTCAAATTTATTATTCTT+AGG + chr3_1:88926767-88926786 Msa0385390:intron 10.0%
!!! TTTTTATTATTTTTTTGATC+AGG + chr3_1:88926806-88926825 Msa0385390:intron 10.0%
!!! TTTTATTATTTTTTTGATCA+GGG + chr3_1:88926807-88926826 Msa0385390:intron 10.0%
!!! TAGCATTTTTTTTTTTTTTT+TGG + chr3_1:88927311-88927330 Msa0385390:intron 10.0%
!!! TTTTTAAAATTTCTTTCAAA+AGG + chr3_1:88927821-88927840 Msa0385390:three_prime_UTR 10.0%
!!! ATTTGTTTCTTCATATTATT+GGG + chr3_1:88923245-88923264 Msa0385390:CDS 15.0%
!! ATTATATCTGAAGATAATTA+AGG - chr3_1:88923508-88923527 None:intergenic 15.0%
!!! TGCTAATATATATTTTTTGA+AGG + chr3_1:88923909-88923928 Msa0385390:intron 15.0%
!!! GCTAATATATATTTTTTGAA+GGG + chr3_1:88923910-88923929 Msa0385390:intron 15.0%
!!! TGAAGATTGAAAATTTTATA+GGG - chr3_1:88924062-88924081 None:intergenic 15.0%
!!! TAGTGATTGAAAATTTTATA+GGG + chr3_1:88924376-88924395 Msa0385390:intron 15.0%
!! AAAAAGTTGACATATTTATA+GGG + chr3_1:88924436-88924455 Msa0385390:intron 15.0%
!! TATTTAACCCTAAAAATAAT+AGG + chr3_1:88924469-88924488 Msa0385390:intron 15.0%
!! AATAAATTTGCATAGATAAA+AGG - chr3_1:88924777-88924796 None:intergenic 15.0%
!! AATAGTTAATAAGGATAATT+TGG - chr3_1:88924990-88925009 None:intergenic 15.0%
!! AAATTATCCTTATTAACTAT+TGG + chr3_1:88924989-88925008 Msa0385390:intron 15.0%
!!! TAGTTTTAAAAGTAATACTT+TGG + chr3_1:88925013-88925032 Msa0385390:intron 15.0%
!!! CATTTTGAAACAAATTTTTT+TGG + chr3_1:88925116-88925135 Msa0385390:intron 15.0%
!!! TTGGTCAAAAATTTTAATAT+TGG - chr3_1:88926407-88926426 None:intergenic 15.0%
!! AAAAAGTTAAAAAATGATAG+AGG + chr3_1:88926638-88926657 Msa0385390:intron 15.0%
!! AAAAGTTAAAAAATGATAGA+GGG + chr3_1:88926639-88926658 Msa0385390:intron 15.0%
!!! ATTTTGAAAAGAAAAAAGTA+TGG + chr3_1:88926703-88926722 Msa0385390:intron 15.0%
!!! TTTTGAAAAGAAAAAAGTAT+GGG + chr3_1:88926704-88926723 Msa0385390:intron 15.0%
!! TAAGATTCATATATTTGATA+AGG + chr3_1:88926734-88926753 Msa0385390:intron 15.0%
!!! TTTAGAGAATTTAAAATGAA+GGG - chr3_1:88926880-88926899 None:intergenic 15.0%
!!! TTTTAGAGAATTTAAAATGA+AGG - chr3_1:88926881-88926900 None:intergenic 15.0%
!!! AGAAAATATTTGTTTTCATT+AGG + chr3_1:88927443-88927462 Msa0385390:intron 15.0%
!!! AAAAATGATTTTGTGTTTTA+AGG + chr3_1:88927931-88927950 Msa0385390:three_prime_UTR 15.0%
!!! AAAATGATTTTGTGTTTTAA+GGG + chr3_1:88927932-88927951 Msa0385390:three_prime_UTR 15.0%
!!! GATTTGTTTCTTCATATTAT+TGG + chr3_1:88923244-88923263 Msa0385390:CDS 20.0%
!!! GATTTTTGCTAATGTATAAA+AGG + chr3_1:88923932-88923951 Msa0385390:intron 20.0%
!!! ATAAGGGTTAAATATGTTTT+TGG + chr3_1:88923975-88923994 Msa0385390:intron 20.0%
!! GAAAAGTTGACATATTTATA+GGG - chr3_1:88924002-88924021 None:intergenic 20.0%
!!! GTGAAGATTGAAAATTTTAT+AGG - chr3_1:88924063-88924082 None:intergenic 20.0%
!!! AAATTTTCAATCTTCACTTT+TGG + chr3_1:88924066-88924085 Msa0385390:intron 20.0%
!!! TATGAGTTTACTTTAAAAGA+GGG - chr3_1:88924093-88924112 None:intergenic 20.0%
!!! ATATGAGTTTACTTTAAAAG+AGG - chr3_1:88924094-88924113 None:intergenic 20.0%
!!! AAATTTTCAATCACTACTTT+TGG - chr3_1:88924372-88924391 None:intergenic 20.0%
!!! GTAGTGATTGAAAATTTTAT+AGG + chr3_1:88924375-88924394 Msa0385390:intron 20.0%
!! CAAAAAGTTGACATATTTAT+AGG + chr3_1:88924435-88924454 Msa0385390:intron 20.0%
!!! TTTAGGGTTAAATATGTTTT+TGG - chr3_1:88924463-88924482 None:intergenic 20.0%
!! TCTTTCATAAATTAGAATGT+AGG + chr3_1:88924812-88924831 Msa0385390:intron 20.0%
!! AAACTAACCAATAGTTAATA+AGG - chr3_1:88924999-88925018 None:intergenic 20.0%
!! AGAAAAAGTTATTATTGCAT+TGG + chr3_1:88925076-88925095 Msa0385390:intron 20.0%
!!! AAAATTTGTTTCAAAATGAG+TGG - chr3_1:88925114-88925133 None:intergenic 20.0%
!! AGTATTAATTAAAATCTAGC+TGG + chr3_1:88925169-88925188 Msa0385390:intron 20.0%
!!! ATAATTTTGAGACAATTTTG+TGG - chr3_1:88925424-88925443 None:intergenic 20.0%
!! TCATTTACTAAGTTTACTAT+TGG - chr3_1:88925478-88925497 None:intergenic 20.0%
!!! TTTAAAAACTTCATAGGTTT+TGG + chr3_1:88926340-88926359 Msa0385390:intron 20.0%
!!! TTAAAAACTTCATAGGTTTT+GGG + chr3_1:88926341-88926360 Msa0385390:intron 20.0%
!!! AAAATTTTTGACCAACTAAA+AGG + chr3_1:88926412-88926431 Msa0385390:intron 20.0%
!!! AAATTTTTGACCAACTAAAA+GGG + chr3_1:88926413-88926432 Msa0385390:intron 20.0%
!! ATAAATGTGAATATCTCTTT+CGG - chr3_1:88926498-88926517 None:intergenic 20.0%
!! TCAAATTTATTATTCTTAGG+CGG + chr3_1:88926770-88926789 Msa0385390:intron 20.0%
!!! TAAAATGAAGGGATTTTATA+AGG - chr3_1:88926869-88926888 None:intergenic 20.0%
!! TTTCTCTGAATTCTATTAAA+AGG + chr3_1:88927005-88927024 Msa0385390:intron 20.0%
!! TTAAAAGGAAATATATCAAC+TGG + chr3_1:88927020-88927039 Msa0385390:intron 20.0%
!! TAAAAGGAAATATATCAACT+GGG + chr3_1:88927021-88927040 Msa0385390:intron 20.0%
!! ATTCAACACTAAATTATCAA+AGG + chr3_1:88927161-88927180 Msa0385390:CDS 20.0%
!! ATCCTAAATTACCAAAATTA+TGG + chr3_1:88927261-88927280 Msa0385390:intron 20.0%
!!! TACCATAATTTTGGTAATTT+AGG - chr3_1:88927266-88927285 None:intergenic 20.0%
!!! TACATGTTTTGCTTTTATAA+TGG + chr3_1:88927526-88927545 Msa0385390:intron 20.0%
!! TAAACAACTTAATTACATGT+AGG + chr3_1:88927765-88927784 Msa0385390:three_prime_UTR 20.0%
!!! AAATTTGTTTTGCAAGAAAT+CGG - chr3_1:88927796-88927815 None:intergenic 20.0%
!!! AAATGATTTTGTGTTTTAAG+GGG + chr3_1:88927933-88927952 Msa0385390:three_prime_UTR 20.0%
! AACTTAAATTCAGCTGAAAA+GGG + chr3_1:88923157-88923176 Msa0385390:five_prime_UTR 25.0%
! TATGAAGAAACAAATCATCA+AGG - chr3_1:88923240-88923259 None:intergenic 25.0%
!!! AGTTATTTCTTACACAACTA+AGG + chr3_1:88923268-88923287 Msa0385390:CDS 25.0%
! ATAACATGAAAACATATGCT+AGG + chr3_1:88923384-88923403 Msa0385390:CDS 25.0%
!! CAGAGACATTTTATCTAAAA+TGG + chr3_1:88923717-88923736 Msa0385390:intron 25.0%
! CGAAAAGTTGACATATTTAT+AGG - chr3_1:88924003-88924022 None:intergenic 25.0%
!! AGTTGAAGGAAAATTTTAGA+GGG - chr3_1:88924405-88924424 None:intergenic 25.0%
!! AAGTTGAAGGAAAATTTTAG+AGG - chr3_1:88924404-88924423 None:intergenic 25.0%
!! AAGTTGAAGGAAAATTTTAG+AGG + chr3_1:88924404-88924423 Msa0385390:intron 25.0%
!! AGTTGAAGGAAAATTTTAGA+GGG + chr3_1:88924405-88924424 Msa0385390:intron 25.0%
!!! AAATTTTTTAGGTTCATCCA+TGG - chr3_1:88924679-88924698 None:intergenic 25.0%
! CCTAAAAAATTTACTAGATC+CGG + chr3_1:88924687-88924706 Msa0385390:intron 25.0%
! TTCATAAATTAGAATGTAGG+AGG + chr3_1:88924815-88924834 Msa0385390:intron 25.0%
! AATGATTAAGAGAAAGAGAA+TGG + chr3_1:88924956-88924975 Msa0385390:intron 25.0%
! AATGAAATAGGAGTTTGAAA+AGG + chr3_1:88925198-88925217 Msa0385390:intron 25.0%
!! AATTTTGTGGATCCATTATT+TGG - chr3_1:88925411-88925430 None:intergenic 25.0%
! AAAGACAAGTTATAAACCAT+GGG + chr3_1:88925512-88925531 Msa0385390:intron 25.0%
!! CAATTTACTTCCTTTTCTAT+TGG + chr3_1:88925679-88925698 Msa0385390:intron 25.0%
! ATATATCACACCAATAGAAA+AGG - chr3_1:88925692-88925711 None:intergenic 25.0%
! TTTCTTATTCCTTTCTAACT+TGG + chr3_1:88925905-88925924 Msa0385390:intron 25.0%
! TTTGAACAAATCTATTTGAC+CGG - chr3_1:88925961-88925980 None:intergenic 25.0%
!! GATTTGTTCAAAGAATACAT+AGG + chr3_1:88925969-88925988 Msa0385390:CDS 25.0%
! ATGGCTCAAAAAATATGTAT+TGG - chr3_1:88926084-88926103 None:intergenic 25.0%
!! GCTGAACTTTTAAATTCTTT+AGG - chr3_1:88926223-88926242 None:intergenic 25.0%
! AGTAATTGCTTATTTAACGT+TGG + chr3_1:88926308-88926327 Msa0385390:intron 25.0%
! GTAATTGCTTATTTAACGTT+GGG + chr3_1:88926309-88926328 Msa0385390:intron 25.0%
!! TAAAAACTTCATAGGTTTTG+GGG + chr3_1:88926342-88926361 Msa0385390:intron 25.0%
!! GGTTATACATACCATAATTT+TGG - chr3_1:88927275-88927294 None:intergenic 25.0%
!! ATGCTAATAAAAAGAAGTGT+CGG - chr3_1:88927297-88927316 None:intergenic 25.0%
!!! CATGCAAATACTTTTTAACA+TGG - chr3_1:88927484-88927503 None:intergenic 25.0%
!! TGTATATATTTTCGAAGAAG+AGG - chr3_1:88927710-88927729 None:intergenic 25.0%
CAACTTAAATTCAGCTGAAA+AGG + chr3_1:88923156-88923175 Msa0385390:five_prime_UTR 30.0%
AAAGTTCCATCAGACTATAT+AGG + chr3_1:88923473-88923492 Msa0385390:CDS 30.0%
TATGTACCTATATAGTCTGA+TGG - chr3_1:88923482-88923501 None:intergenic 30.0%
ATGTGTTGAAGATGTATAAG+TGG - chr3_1:88923569-88923588 None:intergenic 30.0%
CTTATACATCTTCAACACAT+TGG + chr3_1:88923569-88923588 Msa0385390:intron 30.0%
TGATATTGCAACTGAAATTG+TGG - chr3_1:88923694-88923713 None:intergenic 30.0%
TAGAAAAAACCATCTAAGAG+TGG + chr3_1:88923827-88923846 Msa0385390:intron 30.0%
TTATAGGGACTAAAAGTTGA+AGG - chr3_1:88924391-88924410 None:intergenic 30.0%
TTATAGGGACTAAAAGTTGA+AGG + chr3_1:88924391-88924410 Msa0385390:intron 30.0%
!!! GTTGGTGCCTATTATTTTTA+GGG - chr3_1:88924479-88924498 None:intergenic 30.0%
!!! CCGGATCTAGTAAATTTTTT+AGG - chr3_1:88924690-88924709 None:intergenic 30.0%
! CTCTCTCTTGACATATTTTA+TGG - chr3_1:88924856-88924875 None:intergenic 30.0%
!! AAACGACACTCATTTTGAAA+CGG - chr3_1:88924907-88924926 None:intergenic 30.0%
!!! TTCAAAATGAGTGTCGTTTT+AGG + chr3_1:88924908-88924927 Msa0385390:intron 30.0%
! AAGGTATTAGAACTTGAACA+AGG + chr3_1:88925217-88925236 Msa0385390:intron 30.0%
!!! GTTGAGTTTTGATTTTTGAG+TGG + chr3_1:88925281-88925300 Msa0385390:intron 30.0%
!!! AGTTGTTTTTTCCCAACAAA+TGG + chr3_1:88925313-88925332 Msa0385390:intron 30.0%
TTATTTGGAAGCTCGTAATA+TGG - chr3_1:88925396-88925415 None:intergenic 30.0%
TATTACGAGCTTCCAAATAA+TGG + chr3_1:88925396-88925415 Msa0385390:intron 30.0%
TACTAAGTTTACTATTGGAG+TGG - chr3_1:88925473-88925492 None:intergenic 30.0%
! CATGGTTTATAACTTGTCTT+TGG - chr3_1:88925513-88925532 None:intergenic 30.0%
CAAAGACAAGTTATAAACCA+TGG + chr3_1:88925511-88925530 Msa0385390:intron 30.0%
TGATATATCAGTTGAAGCAT+TGG + chr3_1:88925704-88925723 Msa0385390:intron 30.0%
! GATATATCAGTTGAAGCATT+GGG + chr3_1:88925705-88925724 Msa0385390:intron 30.0%
TAATAGTGACCAAGTTAGAA+AGG - chr3_1:88925917-88925936 None:intergenic 30.0%
GAATACATAGGAAAGCTAAA+AGG + chr3_1:88925981-88926000 Msa0385390:CDS 30.0%
! CATATTGTAGTTCTCTAAGA+TGG - chr3_1:88926103-88926122 None:intergenic 30.0%
! GGAGTATACCTTTAAGAAAT+TGG - chr3_1:88926165-88926184 None:intergenic 30.0%
AAGGTATACTCCTAATAACA+TGG + chr3_1:88926173-88926192 Msa0385390:intron 30.0%
CATTGAAACACCATGTTATT+AGG - chr3_1:88926186-88926205 None:intergenic 30.0%
!! AACATTGATTCACCGTATTA+TGG - chr3_1:88926466-88926485 None:intergenic 30.0%
!!! ACTTTTTTTGTGTCTTCCAT+AGG - chr3_1:88926558-88926577 None:intergenic 30.0%
TATGGAAGACACAAAAAAAG+TGG + chr3_1:88926557-88926576 Msa0385390:intron 30.0%
ATGGAAGACACAAAAAAAGT+GGG + chr3_1:88926558-88926577 Msa0385390:intron 30.0%
ATATTTGAATTACCTCATCC+AGG + chr3_1:88926923-88926942 Msa0385390:intron 30.0%
TATTAAGTGTTCCACCAATT+GGG + chr3_1:88927061-88927080 Msa0385390:CDS 30.0%
CACTAAATTATCAAAGGAGT+TGG + chr3_1:88927167-88927186 Msa0385390:CDS 30.0%
!! TGCTAATAAAAAGAAGTGTC+GGG - chr3_1:88927296-88927315 None:intergenic 30.0%
!! TGTTTTGCTTTTATAATGGC+AGG + chr3_1:88927530-88927549 Msa0385390:intron 30.0%
TATCCAATGTGAAGATGTTA+GGG + chr3_1:88927625-88927644 Msa0385390:three_prime_UTR 30.0%
CAAAAAGAAACTAGAAGAAC+TGG - chr3_1:88927733-88927752 None:intergenic 30.0%
!!! CAGTTCTTCTAGTTTCTTTT+TGG + chr3_1:88927731-88927750 Msa0385390:three_prime_UTR 30.0%
!! CATACACTTTAGAATATCCT+AGG - chr3_1:88927872-88927891 None:intergenic 30.0%
!! CTAGGATATTCTAAAGTGTA+TGG + chr3_1:88927870-88927889 Msa0385390:three_prime_UTR 30.0%
TTAAATTCAGCTGAAAAGGG+AGG + chr3_1:88923160-88923179 Msa0385390:five_prime_UTR 35.0%
TAAATTCAGCTGAAAAGGGA+GGG + chr3_1:88923161-88923180 Msa0385390:five_prime_UTR 35.0%
! TTACACAACTAAGGCTAGTT+TGG + chr3_1:88923277-88923296 Msa0385390:CDS 35.0%
ACTGCTGGAAATGAAACATT+TGG - chr3_1:88923320-88923339 None:intergenic 35.0%
TTTCCAGCAGTATTTGTGTT+TGG + chr3_1:88923329-88923348 Msa0385390:CDS 35.0%
TGTGTTTGGAGATTCAATCA+TGG + chr3_1:88923343-88923362 Msa0385390:CDS 35.0%
TGGAGATTCAATCATGGATA+CGG + chr3_1:88923349-88923368 Msa0385390:CDS 35.0%
! AGGTGCAATTTTCTTCCATA+TGG + chr3_1:88923404-88923423 Msa0385390:CDS 35.0%
! GGTGCAATTTTCTTCCATAT+GGG + chr3_1:88923405-88923424 Msa0385390:CDS 35.0%
!! CCTTTGAAATCTTTCCCATA+TGG - chr3_1:88923422-88923441 None:intergenic 35.0%
CCATATGGGAAAGATTTCAA+AGG + chr3_1:88923419-88923438 Msa0385390:CDS 35.0%
TATGGGAAAGATTTCAAAGG+AGG + chr3_1:88923422-88923441 Msa0385390:CDS 35.0%
GGAGTATACTATTTGTGTCA+TGG + chr3_1:88923590-88923609 Msa0385390:intron 35.0%
TATAACTGTTTGCACCGTAA+GGG - chr3_1:88923635-88923654 None:intergenic 35.0%
ATATAACTGTTTGCACCGTA+AGG - chr3_1:88923636-88923655 None:intergenic 35.0%
ATTACCTCTCGATGAATTGA+GGG - chr3_1:88923806-88923825 None:intergenic 35.0%
!! GGTTGGTGCCTATTATTTTT+AGG - chr3_1:88924480-88924499 None:intergenic 35.0%
! AATACTTAGAGCATCTCCAA+TGG + chr3_1:88924518-88924537 Msa0385390:intron 35.0%
ATATTAGGTGCTCCCTATTT+GGG - chr3_1:88924637-88924656 None:intergenic 35.0%
!! AAATAGGGAGCACCTAATAT+GGG + chr3_1:88924637-88924656 Msa0385390:intron 35.0%
!! TTCAATTTGGTGCCCATATT+AGG - chr3_1:88924652-88924671 None:intergenic 35.0%
TAATATGGGCACCAAATTGA+AGG + chr3_1:88924651-88924670 Msa0385390:intron 35.0%
AATATGGGCACCAAATTGAA+GGG + chr3_1:88924652-88924671 Msa0385390:intron 35.0%
GAGTGTTTGAGAAAGATAAG+AGG - chr3_1:88924743-88924762 None:intergenic 35.0%
! GTAGTGTGCAGAGTATTAAT+TGG + chr3_1:88925038-88925057 Msa0385390:intron 35.0%
! TGTGCAGAGTATTAATTGGA+GGG + chr3_1:88925042-88925061 Msa0385390:intron 35.0%
!!! GACACTCATTTTGAAACAGA+GGG + chr3_1:88925146-88925165 Msa0385390:intron 35.0%
! AGCTGGTGTTGAAATGAAAT+AGG + chr3_1:88925186-88925205 Msa0385390:intron 35.0%
! TTTTCCCAACAAATGGTGAT+CGG + chr3_1:88925320-88925339 Msa0385390:intron 35.0%
TCACCCATGATCTTTCAATT+TGG + chr3_1:88925367-88925386 Msa0385390:intron 35.0%
CACCCATGATCTTTCAATTT+GGG + chr3_1:88925368-88925387 Msa0385390:intron 35.0%
ACCCATGATCTTTCAATTTG+GGG + chr3_1:88925369-88925388 Msa0385390:intron 35.0%
ACCCCAAATTGAAAGATCAT+GGG - chr3_1:88925373-88925392 None:intergenic 35.0%
GTGGCAAAAGCAATAAAAAG+TGG - chr3_1:88925454-88925473 None:intergenic 35.0%
ACAAGTTATAAACCATGGGA+CGG + chr3_1:88925516-88925535 Msa0385390:intron 35.0%
!! AGTTGAAGCATTGGGAATTA+AGG + chr3_1:88925713-88925732 Msa0385390:intron 35.0%
ATATTTGGATCCAAATACGC+CGG - chr3_1:88925747-88925766 None:intergenic 35.0%
GGAAAGCTAAAAGGAATTGT+TGG + chr3_1:88925990-88926009 Msa0385390:CDS 35.0%
CTAAAAGGAATTGTTGGAGA+GGG + chr3_1:88925996-88926015 Msa0385390:CDS 35.0%
! CTTTAAGAAATTGGAAGCAG+AGG - chr3_1:88926156-88926175 None:intergenic 35.0%
CTCTGCTTCCAATTTCTTAA+AGG + chr3_1:88926154-88926173 Msa0385390:CDS 35.0%
! ATTGATTCACCGTATTATGG+AGG - chr3_1:88926463-88926482 None:intergenic 35.0%
CTCCTCAAGATTATCTATAG+TGG + chr3_1:88926527-88926546 Msa0385390:intron 35.0%
CTCCACTATAGATAATCTTG+AGG - chr3_1:88926532-88926551 None:intergenic 35.0%
CTCAAGATTATCTATAGTGG+AGG + chr3_1:88926530-88926549 Msa0385390:intron 35.0%
CTTACACATTCTTTAACTCC+TGG - chr3_1:88926944-88926963 None:intergenic 35.0%
AAATATATCAACTGGGTGCA+AGG + chr3_1:88927028-88927047 Msa0385390:CDS 35.0%
GTATTAAGTGTTCCACCAAT+TGG + chr3_1:88927060-88927079 Msa0385390:CDS 35.0%
AGGTAAACCATCCTTGTATT+GGG - chr3_1:88927213-88927232 None:intergenic 35.0%
AAGGTAAACCATCCTTGTAT+TGG - chr3_1:88927214-88927233 None:intergenic 35.0%
GAAGAGGATTGTAAACATCA+AGG - chr3_1:88927233-88927252 None:intergenic 35.0%
! TTTAGGATGATGTCAAGAAG+AGG - chr3_1:88927249-88927268 None:intergenic 35.0%
GGTTATAAAGTCGTTGACAA+AGG + chr3_1:88927551-88927570 Msa0385390:intron 35.0%
CTTCACATTGGATAGCAAAT+TGG - chr3_1:88927619-88927638 None:intergenic 35.0%
CTATCCAATGTGAAGATGTT+AGG + chr3_1:88927624-88927643 Msa0385390:three_prime_UTR 35.0%
TTTCAAAAGGATGCTTCGTA+AGG + chr3_1:88927834-88927853 Msa0385390:three_prime_UTR 35.0%
GCTTCGTAAGGAAATATGAA+TGG + chr3_1:88927846-88927865 Msa0385390:three_prime_UTR 35.0%
TAAGGAAATATGAATGGCCT+AGG + chr3_1:88927852-88927871 Msa0385390:three_prime_UTR 35.0%
GCTGGAAATGAAACATTTGG+TGG - chr3_1:88923317-88923336 None:intergenic 40.0%
TCTCCAAACACAAATACTGC+TGG - chr3_1:88923335-88923354 None:intergenic 40.0%
GGAGATTCAATCATGGATAC+GGG + chr3_1:88923350-88923369 Msa0385390:CDS 40.0%
AAGGGCAACAAGCTCAATTT+AGG - chr3_1:88923617-88923636 None:intergenic 40.0%
!! AATTGAGCTTGTTGCCCTTA+CGG + chr3_1:88923618-88923637 Msa0385390:intron 40.0%
ATTACCCTCAATTCATCGAG+AGG + chr3_1:88923799-88923818 Msa0385390:intron 40.0%
CATTACCTCTCGATGAATTG+AGG - chr3_1:88923807-88923826 None:intergenic 40.0%
TTTCACTCACCACTCTTAGA+TGG - chr3_1:88923839-88923858 None:intergenic 40.0%
ACTCATCATGAGTTCACCAT+TGG - chr3_1:88924537-88924556 None:intergenic 40.0%
CATATTAGGTGCTCCCTATT+TGG - chr3_1:88924638-88924657 None:intergenic 40.0%
!! CAAATAGGGAGCACCTAATA+TGG + chr3_1:88924636-88924655 Msa0385390:intron 40.0%
ATATGGGCACCAAATTGAAG+GGG + chr3_1:88924653-88924672 Msa0385390:intron 40.0%
AAAAACAAGAGTTGACTGGC+CGG - chr3_1:88924709-88924728 None:intergenic 40.0%
!!! GCCAGTCAACTCTTGTTTTT+GGG + chr3_1:88924709-88924728 Msa0385390:intron 40.0%
!!! CCAGTCAACTCTTGTTTTTG+GGG + chr3_1:88924710-88924729 Msa0385390:intron 40.0%
!!! GACACTCATTTTGAAACGGA+GGG - chr3_1:88924903-88924922 None:intergenic 40.0%
! GTGTGCAGAGTATTAATTGG+AGG + chr3_1:88925041-88925060 Msa0385390:intron 40.0%
!!! CGACACTCATTTTGAAACAG+AGG + chr3_1:88925145-88925164 Msa0385390:intron 40.0%
TCCTTCAACTACTACTTCTG+TGG - chr3_1:88925249-88925268 None:intergenic 40.0%
GACCCCAAATTGAAAGATCA+TGG - chr3_1:88925374-88925393 None:intergenic 40.0%
GGGAATTAAGGAATTTCTGC+CGG + chr3_1:88925725-88925744 Msa0385390:CDS 40.0%
! AGATCGCTAGGTTGGATATT+TGG - chr3_1:88925762-88925781 None:intergenic 40.0%
! CAAAATACGTACCGCAGTTT+TGG - chr3_1:88925838-88925857 None:intergenic 40.0%
CAAATCTATTTGACCGGACA+AGG - chr3_1:88925955-88925974 None:intergenic 40.0%
GCTAAAAGGAATTGTTGGAG+AGG + chr3_1:88925995-88926014 Msa0385390:CDS 40.0%
AACCACAAGGAAAACACTGT+TGG - chr3_1:88926042-88926061 None:intergenic 40.0%
! AGTGTTTTCCTTGTGGTTCA+AGG + chr3_1:88926044-88926063 Msa0385390:CDS 40.0%
! TTAGACTCGACCCTTTTAGT+TGG - chr3_1:88926426-88926445 None:intergenic 40.0%
AACTAAAAGGGTCGAGTCTA+AGG + chr3_1:88926425-88926444 Msa0385390:intron 40.0%
AGGTCTAGACCTCCATAATA+CGG + chr3_1:88926451-88926470 Msa0385390:intron 40.0%
! ATCTATAGTGGAGGAACCTA+TGG + chr3_1:88926539-88926558 Msa0385390:intron 40.0%
CATTCTTTAACTCCTGGATG+AGG - chr3_1:88926938-88926957 None:intergenic 40.0%
AGTCCCTAACATCTTCACAT+TGG - chr3_1:88927631-88927650 None:intergenic 40.0%
! ATGTTAGGGACTACGTTTTC+TGG + chr3_1:88927639-88927658 Msa0385390:three_prime_UTR 40.0%
! TGTTAGGGACTACGTTTTCT+GGG + chr3_1:88927640-88927659 Msa0385390:three_prime_UTR 40.0%
!! GTGTATGGTGATGTTTTGTG+AGG + chr3_1:88927885-88927904 Msa0385390:three_prime_UTR 40.0%
!! TATGGTGATGTTTTGTGAGG+TGG + chr3_1:88927888-88927907 Msa0385390:three_prime_UTR 40.0%
CATTGCAAAACCGACCAGTA+GGG - chr3_1:88923451-88923470 None:intergenic 45.0%
GTAGTCAACGATCACAGTTG+CGG - chr3_1:88923749-88923768 None:intergenic 45.0%
TACAACCCCACTCCCAAATA+GGG + chr3_1:88924622-88924641 Msa0385390:intron 45.0%
!!! GGCCAGTCAACTCTTGTTTT+TGG + chr3_1:88924708-88924727 Msa0385390:intron 45.0%
CCCCAAAAACAAGAGTTGAC+TGG - chr3_1:88924713-88924732 None:intergenic 45.0%
!!! CGACACTCATTTTGAAACGG+AGG - chr3_1:88924904-88924923 None:intergenic 45.0%
GCCACAGAAGTAGTAGTTGA+AGG + chr3_1:88925245-88925264 Msa0385390:intron 45.0%
GTGAAATTTGAACCGTCCCA+TGG - chr3_1:88925531-88925550 None:intergenic 45.0%
GTTTGCACGCATTCAATGCA+TGG - chr3_1:88925618-88925637 None:intergenic 45.0%
GACTAGGGAGTCTGAATTCA+AGG + chr3_1:88925651-88925670 Msa0385390:intron 45.0%
ACAGGTGTTTGCTTTGCATC+CGG + chr3_1:88925786-88925805 Msa0385390:CDS 45.0%
TCCACTCACATCCAAAACTG+CGG + chr3_1:88925824-88925843 Msa0385390:CDS 45.0%
CAGTCAGCTATATCCTTGTC+CGG + chr3_1:88925939-88925958 Msa0385390:intron 45.0%
! CAAGGAAAACACTGTTGGCT+AGG - chr3_1:88926037-88926056 None:intergenic 45.0%
! AGCCAACAGTGTTTTCCTTG+TGG + chr3_1:88926037-88926056 Msa0385390:CDS 45.0%
CGTTACTTCCTTGAACCACA+AGG - chr3_1:88926055-88926074 None:intergenic 45.0%
TCCTTCTTACACTGACCTCA+TGG + chr3_1:88926127-88926146 Msa0385390:CDS 45.0%
ACCATGAGGTCAGTGTAAGA+AGG - chr3_1:88926131-88926150 None:intergenic 45.0%
AAGGGTCGAGTCTAAGGAAA+AGG + chr3_1:88926431-88926450 Msa0385390:intron 45.0%
TATATCAACTGGGTGCAAGG+AGG + chr3_1:88927031-88927050 Msa0385390:CDS 45.0%
TGAAATGGCACACACCCAAT+TGG - chr3_1:88927078-88927097 None:intergenic 45.0%
!! GTGTGTGCCATTTCAGAGAA+CGG + chr3_1:88927083-88927102 Msa0385390:CDS 45.0%
! CCAACAACCGTTCTCTGAAA+TGG - chr3_1:88927093-88927112 None:intergenic 45.0%
CCATTTCAGAGAACGGTTGT+TGG + chr3_1:88927090-88927109 Msa0385390:CDS 45.0%
TTTCAGAGAACGGTTGTTGG+AGG + chr3_1:88927093-88927112 Msa0385390:CDS 45.0%
! AGGAGTTGGCTTCTCTTAAC+CGG + chr3_1:88927181-88927200 Msa0385390:CDS 45.0%
TCCTTGTATTGGGCAAGTTC+CGG - chr3_1:88927203-88927222 None:intergenic 45.0%
GAACTTGCCCAATACAAGGA+TGG + chr3_1:88927203-88927222 Msa0385390:CDS 45.0%
GTCGTTGACAAAGGATGTTG+TGG + chr3_1:88927560-88927579 Msa0385390:CDS 45.0%
TTGCTGTAAACACTCTCCGA+GGG - chr3_1:88927677-88927696 None:intergenic 45.0%
!!! TTTTAACAATAATAAAAATA+AGG + chr3_1:88923958-88923977 Msa0385390:intron 5.0%
!! TTTAACAATAATAAAAATAA+GGG + chr3_1:88923959-88923978 Msa0385390:intron 5.0%
!!! AAAAAATTCTAATTTTTTTT+TGG + chr3_1:88924271-88924290 Msa0385390:intron 5.0%
!! ACAAAAATTAAATTAAAAAT+AGG + chr3_1:88924344-88924363 Msa0385390:intron 5.0%
!! CAAAAATTAAATTAAAAATA+GGG + chr3_1:88924345-88924364 Msa0385390:intron 5.0%
!! AAAAATTAAATTAAAAATAG+GGG + chr3_1:88924346-88924365 Msa0385390:intron 5.0%
!! TTCAAAGGAGGCATCCCTAC+TGG + chr3_1:88923434-88923453 Msa0385390:CDS 50.0%
CCATTGCAAAACCGACCAGT+AGG - chr3_1:88923452-88923471 None:intergenic 50.0%
!! CCTACTGGTCGGTTTTGCAA+TGG + chr3_1:88923449-88923468 Msa0385390:CDS 50.0%
CTACAACCCCACTCCCAAAT+AGG + chr3_1:88924621-88924640 Msa0385390:intron 50.0%
CATCCATGGCCCCTTCAATT+TGG - chr3_1:88924665-88924684 None:intergenic 50.0%
CCAGCCGATCACCATTTGTT+GGG - chr3_1:88925327-88925346 None:intergenic 50.0%
TCCAGCCGATCACCATTTGT+TGG - chr3_1:88925328-88925347 None:intergenic 50.0%
GCATTGAATGCGTGCAAACG+AGG + chr3_1:88925619-88925638 Msa0385390:intron 50.0%
TGAATGCGTGCAAACGAGGA+CGG + chr3_1:88925623-88925642 Msa0385390:intron 50.0%
GGAATTTCTGCCGGCGTATT+TGG + chr3_1:88925734-88925753 Msa0385390:CDS 50.0%
CTGTGACAAGATCGCTAGGT+TGG - chr3_1:88925770-88925789 None:intergenic 50.0%
CAACCTAGCGATCTTGTCAC+AGG + chr3_1:88925768-88925787 Msa0385390:CDS 50.0%
ACACCTGTGACAAGATCGCT+AGG - chr3_1:88925774-88925793 None:intergenic 50.0%
GGATGTGAGTGGATCATACC+CGG - chr3_1:88925817-88925836 None:intergenic 50.0%
!!! ACCGCAGTTTTGGATGTGAG+TGG - chr3_1:88925828-88925847 None:intergenic 50.0%
CGGACAAGGATATAGCTGAC+TGG - chr3_1:88925941-88925960 None:intergenic 50.0%
AATGGCACACACCCAATTGG+TGG - chr3_1:88927075-88927094 None:intergenic 50.0%
ACCGGAACTTGCCCAATACA+AGG + chr3_1:88927199-88927218 Msa0385390:CDS 50.0%
GACAAAGGATGTTGTGGCAC+AGG + chr3_1:88927566-88927585 Msa0385390:CDS 50.0%
! CTGGGACAGTTTTCATCCCT+CGG + chr3_1:88927658-88927677 Msa0385390:three_prime_UTR 50.0%
! CTTGCTGTAAACACTCTCCG+AGG - chr3_1:88927678-88927697 None:intergenic 50.0%
! GGTGATGTTTTGTGAGGTGG+CGG + chr3_1:88927891-88927910 Msa0385390:three_prime_UTR 50.0%
!! AAGGAGGCATCCCTACTGGT+CGG + chr3_1:88923438-88923457 Msa0385390:CDS 55.0%
GTGCTCCCTATTTGGGAGTG+GGG - chr3_1:88924630-88924649 None:intergenic 55.0%
GGTGCTCCCTATTTGGGAGT+GGG - chr3_1:88924631-88924650 None:intergenic 55.0%
AGGTGCTCCCTATTTGGGAG+TGG - chr3_1:88924632-88924651 None:intergenic 55.0%
GCACCAAATTGAAGGGGCCA+TGG + chr3_1:88924659-88924678 Msa0385390:intron 55.0%
CCCAACAAATGGTGATCGGC+TGG + chr3_1:88925324-88925343 Msa0385390:intron 55.0%
AAATGGTGATCGGCTGGAGC+TGG + chr3_1:88925330-88925349 Msa0385390:intron 55.0%
GGTGTTTGCTTTGCATCCGG+TGG + chr3_1:88925789-88925808 Msa0385390:CDS 55.0%
TGCTTTGCATCCGGTGGTTC+CGG + chr3_1:88925795-88925814 Msa0385390:CDS 55.0%
TGGATCATACCCGGAACCAC+CGG - chr3_1:88925808-88925827 None:intergenic 55.0%
CAACTGGGTGCAAGGAGGAT+AGG + chr3_1:88927036-88927055 Msa0385390:CDS 55.0%
TTGTGGCACAGGAGCAGTAG+AGG + chr3_1:88927577-88927596 Msa0385390:CDS 55.0%
! TTGTGAGGTGGCGGTTGATG+AGG + chr3_1:88927900-88927919 Msa0385390:three_prime_UTR 55.0%
!! CGGCTGGAGCTGGTCGTTTT+TGG + chr3_1:88925340-88925359 Msa0385390:intron 60.0%
TGCGTGCAAACGAGGACGGT+AGG + chr3_1:88925627-88925646 Msa0385390:intron 60.0%
GCGTGCAAACGAGGACGGTA+GGG + chr3_1:88925628-88925647 Msa0385390:intron 60.0%
CGTGCAAACGAGGACGGTAG+GGG + chr3_1:88925629-88925648 Msa0385390:intron 60.0%
AACGAGGACGGTAGGGGACT+AGG + chr3_1:88925635-88925654 Msa0385390:intron 60.0%
ACGAGGACGGTAGGGGACTA+GGG + chr3_1:88925636-88925655 Msa0385390:intron 60.0%
GCTTTGCATCCGGTGGTTCC+GGG + chr3_1:88925796-88925815 Msa0385390:CDS 60.0%
TGGAAGCAGAGGCGACCATG+AGG - chr3_1:88926145-88926164 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 88923147 88928027 88923147 ID=Msa0385390;Name=Msa0385390
chr3_1 mRNA 88923147 88928027 88923147 ID=Msa0385390-mRNA-1;Parent=Msa0385390;Name=Msa0385390-mRNA-1;_AED=0.10;_eAED=0.10;_QI=83|0.75|0.8|1|0.5|0.8|5|431|290
chr3_1 exon 88923147 88923494 88923147 ID=Msa0385390-mRNA-1:exon:24109;Parent=Msa0385390-mRNA-1
chr3_1 exon 88925715 88925845 88925715 ID=Msa0385390-mRNA-1:exon:24110;Parent=Msa0385390-mRNA-1
chr3_1 exon 88925942 88926175 88925942 ID=Msa0385390-mRNA-1:exon:24111;Parent=Msa0385390-mRNA-1
chr3_1 exon 88927027 88927224 88927027 ID=Msa0385390-mRNA-1:exon:24112;Parent=Msa0385390-mRNA-1
chr3_1 exon 88927552 88928027 88927552 ID=Msa0385390-mRNA-1:exon:24113;Parent=Msa0385390-mRNA-1
chr3_1 five_prime_UTR 88923147 88923229 88923147 ID=Msa0385390-mRNA-1:five_prime_utr;Parent=Msa0385390-mRNA-1
chr3_1 CDS 88923230 88923494 88923230 ID=Msa0385390-mRNA-1:cds;Parent=Msa0385390-mRNA-1
chr3_1 CDS 88925715 88925845 88925715 ID=Msa0385390-mRNA-1:cds;Parent=Msa0385390-mRNA-1
chr3_1 CDS 88925942 88926175 88925942 ID=Msa0385390-mRNA-1:cds;Parent=Msa0385390-mRNA-1
chr3_1 CDS 88927027 88927224 88927027 ID=Msa0385390-mRNA-1:cds;Parent=Msa0385390-mRNA-1
chr3_1 CDS 88927552 88927596 88927552 ID=Msa0385390-mRNA-1:cds;Parent=Msa0385390-mRNA-1
chr3_1 three_prime_UTR 88927597 88928027 88927597 ID=Msa0385390-mRNA-1:three_prime_utr;Parent=Msa0385390-mRNA-1
Gene Sequence

>Msa0385390

ATGTGTTCCTTGATGATTTGTTTCTTCATATTATTGGGAGTTATTTCTTACACAACTAAGGCTAGTTTGGCAACACTAGTGCTTCCACCAAATGTTTCATTTCCAGCAGTATTTGTGTTTGGAGATTCAATCATGGATACGGGCAACAACAATAATAACATGAAAACATATGCTAGGTGCAATTTTCTTCCATATGGGAAAGATTTCAAAGGAGGCATCCCTACTGGTCGGTTTTGCAATGGAAAAGTTCCATCAGACTATATAGTTGAAGCATTGGGAATTAAGGAATTTCTGCCGGCGTATTTGGATCCAAATATCCAACCTAGCGATCTTGTCACAGGTGTTTGCTTTGCATCCGGTGGTTCCGGGTATGATCCACTCACATCCAAAACTGCGTCAGCTATATCCTTGTCCGGTCAAATAGATTTGTTCAAAGAATACATAGGAAAGCTAAAAGGAATTGTTGGAGAGGGTAGAACAAATTTCATCCTAGCCAACAGTGTTTTCCTTGTGGTTCAAGGAAGTAACGACATTTCCAATACATATTTTTTGAGCCATCTTAGAGAACTACAATATGATGTTCCTTCTTACACTGACCTCATGGTCGCCTCTGCTTCCAATTTCTTAAAGGAAATATATCAACTGGGTGCAAGGAGGATAGGAGTATTAAGTGTTCCACCAATTGGGTGTGTGCCATTTCAGAGAACGGTTGTTGGAGGAATTGAAAGAAAATGTGCAGAAAAAATCAACGACGCATGCAAGTTATTCAACACTAAATTATCAAAGGAGTTGGCTTCTCTTAACCGGAACTTGCCCAATACAAGGATGGTTATAAAGTCGTTGACAAAGGATGTTGTGGCACAGGAGCAGTAG
Protein sequence

>Msa0385390

MCSLMICFFILLGVISYTTKASLATLVLPPNVSFPAVFVFGDSIMDTGNNNNNMKTYARCNFLPYGKDFKGGIPTGRFCNGKVPSDYIVEALGIKEFLPAYLDPNIQPSDLVTGVCFASGGSGYDPLTSKTASAISLSGQIDLFKEYIGKLKGIVGEGRTNFILANSVFLVVQGSNDISNTYFLSHLRELQYDVPSYTDLMVASASNFLKEIYQLGARRIGVLSVPPIGCVPFQRTVVGGIERKCAEKINDACKLFNTKLSKELASLNRNLPNTRMVIKSLTKDVVAQEQ*