AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0415830

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0415830 MtrunA17_Chr3g0109731 98.625 582 7 1 1 581 1 582 0.0 1196
Msa0415830 MtrunA17_Chr8g0370701 50.450 555 259 4 1 553 43 583 0.0 599
Msa0415830 MtrunA17_Chr5g0433241 53.286 563 233 8 1 551 1 545 0.0 589
Msa0415830 MtrunA17_Chr5g0396311 50.271 553 261 3 1 553 1 539 0.0 587
Msa0415830 MtrunA17_Chr4g0068151 51.792 558 254 8 1 551 7 556 0.0 575
Msa0415830 MtrunA17_Chr2g0301671 51.075 558 258 7 1 551 7 556 0.0 571
Msa0415830 MtrunA17_Chr5g0433231 51.792 558 250 6 1 551 1 546 0.0 555
Msa0415830 MtrunA17_Chr5g0396331 47.653 554 268 5 1 551 1 535 0.0 554
Msa0415830 MtrunA17_Chr5g0433221 50.538 558 257 7 1 551 1 546 0.0 544
Msa0415830 MtrunA17_Chr6g0471311 49.468 564 256 7 1 551 1 548 0.0 531
Msa0415830 MtrunA17_Chr8g0370731 49.284 489 232 4 67 553 20 494 5.82e-176 508
Msa0415830 MtrunA17_Chr5g0406681 41.367 556 301 11 3 551 29 566 3.05e-140 419
Msa0415830 MtrunA17_Chr4g0028411 26.642 548 359 12 14 552 27 540 1.14e-46 172
Msa0415830 MtrunA17_Chr5g0395431 28.388 546 341 16 18 549 73 582 1.08e-44 167
Msa0415830 MtrunA17_Chr2g0327341 27.848 553 343 15 14 552 27 537 1.02e-43 163
Msa0415830 MtrunA17_Chr6g0471921 28.804 552 337 15 15 554 5 512 1.95e-41 157
Msa0415830 MtrunA17_Chr1g0157401 26.577 523 336 13 37 546 65 552 6.71e-41 156
Msa0415830 MtrunA17_Chr1g0180541 27.007 548 350 16 14 546 28 540 1.73e-40 154
Msa0415830 MtrunA17_Chr3g0102411 26.486 555 333 17 19 549 33 536 2.05e-40 154
Msa0415830 MtrunA17_Chr4g0039791 26.975 519 314 14 49 547 81 554 5.29e-39 150
Msa0415830 MtrunA17_Chr4g0000461 28.131 551 335 17 25 556 36 544 1.18e-38 149
Msa0415830 MtrunA17_Chr8g0353341 27.143 490 297 14 37 501 62 516 1.77e-38 149
Msa0415830 MtrunA17_Chr4g0072561 26.354 554 341 16 18 549 35 543 2.78e-37 145
Msa0415830 MtrunA17_Chr1g0180551 26.259 556 348 16 14 546 97 613 3.06e-36 143
Msa0415830 MtrunA17_Chr5g0409791 26.214 515 333 14 49 547 78 561 1.02e-35 141
Msa0415830 MtrunA17_Chr5g0409771 26.565 527 330 16 36 547 64 548 3.03e-35 139
Msa0415830 MtrunA17_Chr1g0197391 25.849 530 334 16 43 556 82 568 6.50e-34 136
Msa0415830 MtrunA17_Chr2g0334131 33.448 290 172 8 266 549 5 279 4.08e-32 125
Msa0415830 MtrunA17_Chr3g0116251 27.989 368 223 8 194 546 208 548 7.47e-32 129
Msa0415830 MtrunA17_Chr3g0116271 27.671 365 231 7 194 546 207 550 1.23e-31 129
Msa0415830 MtrunA17_Chr1g0186071 24.470 519 335 9 39 549 82 551 2.02e-31 128
Msa0415830 MtrunA17_Chr2g0292471 25.000 552 343 20 39 547 27 550 1.99e-29 122
Msa0415830 MtrunA17_Chr4g0004101 28.980 245 155 7 306 547 96 324 1.42e-22 99.0
Msa0415830 MtrunA17_Chr4g0004841 29.528 254 146 9 306 547 101 333 2.24e-21 95.9
Msa0415830 MtrunA17_Chr7g0252691 23.723 548 351 18 40 550 206 723 4.91e-20 94.4
Msa0415830 MtrunA17_Chr1g0194371 24.644 491 283 18 41 469 78 543 1.73e-19 92.4
Msa0415830 MtrunA17_Chr8g0388081 23.636 550 297 23 41 508 19 527 3.38e-18 88.2
Msa0415830 MtrunA17_Chr1g0157431 26.667 285 185 7 37 312 65 334 1.07e-14 77.0
Msa0415830 MtrunA17_Chr5g0396691 21.689 521 291 18 41 480 80 564 4.50e-14 75.5
Msa0415830 MtrunA17_Chr7g0270221 29.439 214 137 6 259 469 301 503 1.08e-13 73.9
Msa0415830 MtrunA17_Chr3g0124631 33.000 200 100 8 306 484 426 612 4.18e-13 72.4
Msa0415830 MtrunA17_Chr5g0396711 25.588 340 171 14 191 469 226 544 7.94e-13 71.2
Msa0415830 MtrunA17_Chr1g0162621 20.492 488 307 14 40 469 79 543 2.33e-12 69.7
Msa0415830 MtrunA17_Chr1g0160041 32.948 173 94 6 306 469 424 583 7.37e-12 68.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0415830 AT1G65880.1 61.754 570 201 5 1 560 1 563 0.0 715
Msa0415830 AT1G65890.1 60.900 578 213 5 1 570 1 573 0.0 714
Msa0415830 AT1G66120.1 59.036 581 223 4 1 575 1 572 0.0 704
Msa0415830 AT1G68270.1 53.509 570 217 7 1 560 1 532 0.0 583
Msa0415830 AT1G20560.1 50.265 567 264 4 1 563 3 555 0.0 579
Msa0415830 AT3G16910.1 52.330 558 252 8 1 551 9 559 0.0 565
Msa0415830 AT5G16340.1 48.925 558 262 6 1 551 1 542 0.0 558
Msa0415830 AT5G16370.1 48.387 558 265 5 1 551 1 542 0.0 553
Msa0415830 AT2G17650.1 49.464 560 263 4 1 550 48 597 0.0 552
Msa0415830 AT1G21530.2 50.000 550 260 7 9 553 9 548 0.0 551
Msa0415830 AT1G21530.1 50.000 550 258 8 9 553 9 546 0.0 544
Msa0415830 AT1G21540.1 49.278 554 259 8 9 553 9 549 0.0 538
Msa0415830 AT1G75960.1 48.474 557 266 5 1 551 1 542 0.0 532
Msa0415830 AT1G77240.1 47.283 552 268 8 9 553 9 544 0.0 526
Msa0415830 AT1G20560.2 50.102 491 227 4 77 563 1 477 1.14e-171 496
Msa0415830 AT1G76290.1 45.324 556 278 8 1 551 1 535 7.01e-155 455
Msa0415830 AT3G21240.1 29.063 523 327 13 37 549 61 549 1.87e-49 180
Msa0415830 AT1G20510.1 27.687 549 329 20 18 546 36 536 1.52e-44 166
Msa0415830 AT1G51680.1 29.197 548 337 16 19 549 43 556 2.01e-44 166
Msa0415830 AT4G05160.1 26.895 554 346 14 17 552 30 542 4.84e-44 165
Msa0415830 AT4G19010.1 26.829 533 335 14 31 547 62 555 5.76e-43 162
Msa0415830 AT1G20500.1 25.046 543 351 14 18 546 42 542 1.25e-42 161
Msa0415830 AT1G20480.1 27.481 524 328 16 37 546 72 557 2.05e-42 160
Msa0415830 AT3G21230.1 28.653 527 328 12 37 549 71 563 1.14e-41 159
Msa0415830 AT1G65060.1 27.920 548 339 19 18 549 52 559 4.79e-41 157
Msa0415830 AT5G63380.1 26.190 546 326 16 17 546 66 550 2.01e-40 155
Msa0415830 AT5G38120.1 26.972 545 337 17 18 546 43 542 2.14e-38 149
Msa0415830 AT1G51680.3 28.627 517 318 16 19 518 43 525 3.15e-38 148
Msa0415830 AT3G48990.1 28.023 521 310 13 40 543 31 503 3.56e-38 148
Msa0415830 AT3G21240.2 27.872 470 300 13 19 476 41 483 1.41e-37 145
Msa0415830 AT3G21240.3 27.872 470 300 13 19 476 41 483 1.41e-37 145
Msa0415830 AT1G20510.2 28.033 478 283 18 18 475 36 472 1.10e-36 143
Msa0415830 AT5G38120.3 26.886 517 317 17 18 518 43 514 1.13e-33 135
Msa0415830 AT1G30520.2 25.225 555 371 15 20 549 13 548 9.66e-33 132
Msa0415830 AT1G30520.1 25.225 555 371 15 20 549 13 548 9.66e-33 132
Msa0415830 AT1G62940.1 26.071 560 340 16 14 549 26 535 1.72e-32 132
Msa0415830 AT1G51680.2 28.632 475 295 15 19 476 43 490 2.22e-32 130
Msa0415830 AT3G21230.3 27.419 496 312 12 37 518 71 532 8.15e-32 130
Msa0415830 AT1G20510.3 27.778 450 264 18 18 447 36 444 2.42e-30 124
Msa0415830 AT5G38120.4 26.160 474 296 13 18 475 43 478 6.27e-29 120
Msa0415830 AT5G38120.2 26.160 474 296 13 18 475 43 478 6.27e-29 120
Msa0415830 AT3G21230.2 27.533 454 288 11 37 476 71 497 3.60e-27 115
Msa0415830 AT1G65060.2 27.578 446 274 17 18 447 52 464 4.38e-27 115
Msa0415830 AT3G16170.1 25.000 388 240 11 189 547 236 601 3.10e-24 107
Msa0415830 AT1G20490.2 25.728 412 263 15 37 436 61 441 9.52e-23 101
Msa0415830 AT1G20490.1 25.728 412 263 15 37 436 61 441 9.52e-23 101
Msa0415830 AT1G64400.1 25.097 514 285 22 28 472 65 547 1.13e-21 99.8
Msa0415830 AT1G30520.3 23.881 469 319 12 20 471 13 460 2.62e-21 97.8
Msa0415830 AT1G30520.4 23.881 469 319 12 20 471 13 460 2.62e-21 97.8
Msa0415830 AT4G23850.1 24.517 518 280 20 41 480 81 565 4.54e-20 94.7
Msa0415830 AT5G36880.6 23.623 563 369 17 25 550 127 665 1.89e-18 89.7
Msa0415830 AT5G36880.3 23.623 563 369 17 25 550 127 665 1.89e-18 89.7
Msa0415830 AT5G36880.5 23.623 563 369 17 25 550 127 665 1.89e-18 89.7
Msa0415830 AT5G36880.1 23.623 563 369 17 25 550 127 665 1.89e-18 89.7
Msa0415830 AT5G36880.2 23.623 563 369 17 25 550 177 715 2.36e-18 89.4
Msa0415830 AT4G14070.1 21.658 591 321 23 20 501 102 659 7.43e-13 72.0
Msa0415830 AT4G11030.1 30.808 198 109 10 281 472 372 547 8.53e-12 68.6
Msa0415830 AT1G77590.2 32.558 172 96 6 306 469 274 433 1.31e-11 67.8
Msa0415830 AT1G77590.1 32.558 172 96 6 306 469 420 579 1.76e-11 67.4
Msa0415830 AT2G04350.2 30.418 263 138 13 306 551 449 683 5.51e-11 65.9
Msa0415830 AT2G04350.1 30.418 263 138 13 306 551 449 683 5.51e-11 65.9

Find 169 sgRNAs with CRISPR-Local

Find 200 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAGAATTTACCACACTTTA+TGG 0.126746 3_2:-62321472 Msa0415830:CDS
TCTAAAGATGTGATTATTTC+AGG 0.185792 3_2:-62321690 Msa0415830:CDS
TAAAATAATGTTGAAAATAA+TGG 0.193559 3_2:+62322169 None:intergenic
CAAGGACTTTCACCCCATTT+TGG 0.195490 3_2:+62321579 None:intergenic
TGTCACATTATAGAGATTTA+TGG 0.205886 3_2:+62322208 None:intergenic
TATACATAAAGATGGTTATT+TGG 0.207931 3_2:-62321727 Msa0415830:CDS
ATTTCTTCAGGAAGGTAATT+TGG 0.214710 3_2:+62322491 None:intergenic
TATAACGTGGCCTTCAATTT+TGG 0.215714 3_2:-62323529 Msa0415830:five_prime_UTR
ATCTTACCTGTTAAAGTCTT+TGG 0.233560 3_2:+62321417 None:intergenic
TTATGATTGACTTGATTATT+AGG 0.237452 3_2:+62321327 None:intergenic
GCTCTCATCAAGAAAGTTAA+AGG 0.239728 3_2:+62323349 None:intergenic
CATGAGGCAAACACAAAATA+TGG 0.251810 3_2:+62320980 None:intergenic
AAGCGACGGCGAAAGCTTTC+GGG 0.254708 3_2:-62321782 Msa0415830:CDS
AAATGACTCAAATTAAATTA+TGG 0.260323 3_2:+62321023 None:intergenic
TATAGAAAATTTCATGTGAT+TGG 0.280157 3_2:+62323504 None:intergenic
GATTTACCAAAGACTTTAAC+AGG 0.288395 3_2:-62321423 Msa0415830:CDS
CTTCATAGTCACTAAATTAA+TGG 0.289137 3_2:-62323568 Msa0415830:five_prime_UTR
TTGCAATGCCACATCCAAAA+TGG 0.293682 3_2:-62321593 Msa0415830:CDS
AATAAAACAGGTATCAGTTT+TGG 0.306205 3_2:-62322828 Msa0415830:intron
TCATAATAATGACCAGATTA+TGG 0.314754 3_2:-62321310 Msa0415830:CDS
TTTCATGTAACACATGCTTA+TGG 0.320342 3_2:-62322041 Msa0415830:CDS
GTATAGTTTGCTCGACATTT+TGG 0.327519 3_2:+62323382 None:intergenic
GAAAGTTAAAGGAGTGAGTA+TGG 0.331539 3_2:+62323360 None:intergenic
CATTCATCTTGAATTTCTTC+AGG 0.339619 3_2:+62322479 None:intergenic
GAAGCGACGGCGAAAGCTTT+CGG 0.344503 3_2:-62321783 Msa0415830:CDS
TTTAATCCTTGGTTGGGAAA+TGG 0.345052 3_2:-62322363 Msa0415830:CDS
TGTGGTTAAGAATGAGATTA+GGG 0.348530 3_2:+62323471 None:intergenic
TGGCTATAAACAACACCTTT+TGG 0.356699 3_2:+62322413 None:intergenic
TTCTTCCATGAGTAATCTTA+AGG 0.361126 3_2:+62322634 None:intergenic
GGTAATGTCCATAGATAAAC+TGG 0.364652 3_2:+62322332 None:intergenic
GTTAGTTGTTTCCACTTAGT+AGG 0.368641 3_2:-62321069 Msa0415830:three_prime_UTR
AAAATAATGTTGAAAATAAT+GGG 0.371892 3_2:+62322170 None:intergenic
CGCATTGAGACGGTGGTTGA+TGG 0.387285 3_2:+62322739 None:intergenic
TCATACATTGCTGGAATGTT+TGG 0.387598 3_2:+62322803 None:intergenic
ATAGAAAATTTCATGTGATT+GGG 0.396517 3_2:+62323505 None:intergenic
AAGTGAAACGGGTTCCTTCA+TGG 0.397922 3_2:+62323293 None:intergenic
TACCACAAAACACTTAGCTT+TGG 0.397967 3_2:+62321374 None:intergenic
TATGGTCTGACTGAGGCAAC+AGG 0.406278 3_2:-62322023 Msa0415830:CDS
TGGTAAATTCTTCCTACAAT+AGG 0.411253 3_2:+62321482 None:intergenic
GTAAGAGATGGGAAAACAAT+GGG 0.423096 3_2:-62321858 Msa0415830:CDS
GATGTGTAATTCAATGTAAT+TGG 0.423792 3_2:+62322452 None:intergenic
TTTGAGTTTAATCCTTGGTT+GGG 0.424831 3_2:-62322369 Msa0415830:CDS
TTAATCCTTGGTTGGGAAAT+GGG 0.425386 3_2:-62322362 Msa0415830:CDS
TTTGTGAGTGGCAGAAGAAA+TGG 0.427336 3_2:-62321989 Msa0415830:CDS
TTACCTATGTTCCATTGTAA+TGG 0.427373 3_2:-62322314 Msa0415830:CDS
GAGCTCGCCTAGCCGGATTC+CGG 0.428306 3_2:+62322544 None:intergenic
CTTCATGGATGACTGAGGTT+CGG 0.429624 3_2:+62323308 None:intergenic
TTGTGGTTAAGAATGAGATT+AGG 0.431591 3_2:+62323470 None:intergenic
AAATGCATCTCATACATTGC+TGG 0.433221 3_2:+62322794 None:intergenic
GTTATTTGGAAATTAAAGAT+AGG 0.433555 3_2:-62321713 Msa0415830:CDS
GACGGTGGTTGATGGTGTTT+AGG 0.435440 3_2:+62322747 None:intergenic
GACGAGATAGAGCCATAATC+TGG 0.444504 3_2:+62321298 None:intergenic
GTAGTGAACCAGTTTATCTA+TGG 0.450766 3_2:-62322340 Msa0415830:CDS
TGCAATGCCACATCCAAAAT+GGG 0.459922 3_2:-62321592 Msa0415830:CDS
GGGGATGGTTGGTTTAGAAC+TGG 0.460142 3_2:-62321762 Msa0415830:CDS
ACACTTTATGGTACCTAAGA+TGG 0.462947 3_2:-62321460 Msa0415830:CDS
GAGATTATGTTGAAGGGAAG+TGG 0.465461 3_2:-62321834 Msa0415830:CDS
AGTTTGTGACCAAGTGAAAC+GGG 0.471117 3_2:+62323282 None:intergenic
CTGAAGAAATTCAAGATGAA+TGG 0.471358 3_2:-62322478 Msa0415830:CDS
ATGGAGAGTGTGGTAAGAGA+TGG 0.472523 3_2:-62321870 Msa0415830:CDS
GAAACAACTAACAAGAAAGT+TGG 0.473458 3_2:+62321080 None:intergenic
TAAACACTCCCACCGGAATC+CGG 0.473541 3_2:-62322556 Msa0415830:CDS
CTATGTTCCATTGTAATGGT+TGG 0.477230 3_2:-62322310 Msa0415830:CDS
CTTTGAGTTTAATCCTTGGT+TGG 0.482972 3_2:-62322370 Msa0415830:CDS
CGAAAGCTTTCGGGGATGGT+TGG 0.487803 3_2:-62321773 Msa0415830:CDS
CGCCTCAGAGTGTCGAAGAA+TGG 0.487931 3_2:+62322703 None:intergenic
ACAGCAGCTTCTAAAACCTT+AGG 0.490308 3_2:+62321618 None:intergenic
AAGTTTGTGACCAAGTGAAA+CGG 0.494196 3_2:+62323281 None:intergenic
TACTATCAAAGCAACTTCCT+TGG 0.494935 3_2:-62323626 None:intergenic
ACGGCGAAAGCTTTCGGGGA+TGG 0.495228 3_2:-62321777 Msa0415830:CDS
TTCACACTTCAACAATTTGA+GGG 0.495504 3_2:-62321190 Msa0415830:three_prime_UTR
TGCCACTCACAAACAAGTGC+TGG 0.499001 3_2:+62321999 None:intergenic
TGGTTTAGAACTGGTGATGT+TGG 0.499794 3_2:-62321753 Msa0415830:CDS
TCTCCGGTGAATATACTAAC+CGG 0.501022 3_2:-62322113 Msa0415830:CDS
ATGAGATAATTACCTATTGT+AGG 0.504104 3_2:-62321494 Msa0415830:CDS
TGGAGAGTGTGGTAAGAGAT+GGG 0.505965 3_2:-62321869 Msa0415830:CDS
ATTCGTATCAAAAGCAAAAG+AGG 0.506420 3_2:-62322657 Msa0415830:CDS
AAGGGAAGTGGAATCATGAT+GGG 0.506638 3_2:-62321822 Msa0415830:CDS
GTTCACACTTCAACAATTTG+AGG 0.509906 3_2:-62321191 Msa0415830:three_prime_UTR
TGCAATATTGAGAGCACGGA+GGG 0.514867 3_2:+62323231 None:intergenic
CATCTTGAATTTCTTCAGGA+AGG 0.517226 3_2:+62322483 None:intergenic
AGGAAGCGAGGCGGCGACAC+CGG 0.518047 3_2:+62323254 None:intergenic
AGAGGCCTTAAGATTACTCA+TGG 0.518068 3_2:-62322639 Msa0415830:CDS
CGTATTCGAGCTCGCCTAGC+CGG 0.519450 3_2:+62322537 None:intergenic
CTTGAGAAAATCGAGCCACT+TGG 0.519790 3_2:-62322065 Msa0415830:CDS
ATGAAGGAACCCGTTTCACT+TGG 0.520277 3_2:-62323291 Msa0415830:CDS
ATCTGCTTCAGCTTGTTATG+TGG 0.520395 3_2:-62321140 Msa0415830:three_prime_UTR
AGTACTTTGAGTTTAATCCT+TGG 0.521867 3_2:-62322374 Msa0415830:CDS
CTCGCCTAGCCGGATTCCGG+TGG 0.524552 3_2:+62322547 None:intergenic
ATTACATTGAATTACACATC+AGG 0.525480 3_2:-62322449 Msa0415830:CDS
CGAGCTCGAATACGAGCAAA+TGG 0.527362 3_2:-62322528 Msa0415830:CDS
TGTTCTTTATAGTCATCCTA+AGG 0.533616 3_2:-62321634 Msa0415830:CDS
GTGATTGGGACCAAAATTGA+AGG 0.536205 3_2:+62323519 None:intergenic
AACCGGTGGAGCACCACCCC+CGG 0.538649 3_2:-62322096 Msa0415830:CDS
TGTGACACTAAGGAAGAATG+AGG 0.538924 3_2:-62321550 Msa0415830:CDS
GAAGGGAAGTGGAATCATGA+TGG 0.539328 3_2:-62321823 Msa0415830:CDS
GTTGGTGTTATACATAAAGA+TGG 0.545404 3_2:-62321735 Msa0415830:CDS
AAAGAGAGTCATAAAATCTC+CGG 0.548039 3_2:-62322129 Msa0415830:CDS
TCGAAGAATGGTGGCTATGT+TGG 0.554863 3_2:+62322715 None:intergenic
CAACCATTACAATGGAACAT+AGG 0.559310 3_2:+62322311 None:intergenic
CACTACCCATTTCCCAACCA+AGG 0.560736 3_2:+62322357 None:intergenic
CACGGAGGGAGGAAGCGAGG+CGG 0.564152 3_2:+62323245 None:intergenic
GGTACAACTTCAGAACCAAA+AGG 0.565976 3_2:-62322428 Msa0415830:CDS
TCTTTGCAATATTGAGAGCA+CGG 0.566149 3_2:+62323227 None:intergenic
CGATGCTGAAAGCGCGACAA+GGG 0.572970 3_2:-62321941 Msa0415830:CDS
TACGAGCAAATGGTTCATCA+TGG 0.574224 3_2:-62322518 Msa0415830:CDS
GTAATGGTTGGACATTCACT+TGG 0.575202 3_2:-62322298 Msa0415830:CDS
CTTGGTCACAAACTTATGAC+CGG 0.576665 3_2:-62323273 Msa0415830:CDS
CATCTATCACAATCACTAGT+GGG 0.580127 3_2:+62322582 None:intergenic
TGGTTAAGAATGAGATTAGG+GGG 0.581716 3_2:+62323473 None:intergenic
TCGATGCTGAAAGCGCGACA+AGG 0.582751 3_2:-62321942 Msa0415830:CDS
GATGGTGTTTAGGACAGCAC+CGG 0.583797 3_2:+62322757 None:intergenic
TAATGGTTGGACATTCACTT+GGG 0.583819 3_2:-62322297 Msa0415830:CDS
GTAACTACAACTAATTCCAA+TGG 0.584509 3_2:-62323413 Msa0415830:exon
TTTAGGACAGCACCGGCCAT+AGG 0.587665 3_2:+62322764 None:intergenic
GAGCACGGAGGGAGGAAGCG+AGG 0.588763 3_2:+62323242 None:intergenic
GTTGTAGTTACCTAAGTGAG+AGG 0.592569 3_2:+62323425 None:intergenic
TCTTGAAACAATGGAGAGTG+TGG 0.595422 3_2:-62321880 Msa0415830:CDS
GGCCAGCACTTGTTTGTGAG+TGG 0.595693 3_2:-62322001 Msa0415830:CDS
TCATCTATCACAATCACTAG+TGG 0.596057 3_2:+62322581 None:intergenic
TGTGAAGAATCTTGAAACAA+TGG 0.596126 3_2:-62321889 Msa0415830:CDS
AAATTATGGAAGATATAACT+AGG 0.597180 3_2:+62321037 None:intergenic
ACTCCCACCGGAATCCGGCT+AGG 0.597247 3_2:-62322551 Msa0415830:CDS
AGCGACGGCGAAAGCTTTCG+GGG 0.597981 3_2:-62321781 Msa0415830:CDS
CGAACCTCAGTCATCCATGA+AGG 0.598539 3_2:-62323307 Msa0415830:CDS
AAGAGATGGGAAAACAATGG+GGG 0.600740 3_2:-62321856 Msa0415830:CDS
TTTCTCAAGTAGGGACGCCG+GGG 0.601501 3_2:+62322079 None:intergenic
CTATGTTGGCCGCATTGAGA+CGG 0.602111 3_2:+62322729 None:intergenic
GGACTGCTCAACCTACTAAG+TGG 0.602551 3_2:+62321058 None:intergenic
CTCAGAGTGTCGAAGAATGG+TGG 0.608683 3_2:+62322706 None:intergenic
TTGTAGTTACCTAAGTGAGA+GGG 0.608900 3_2:+62323426 None:intergenic
ACGTTATATGTGAAGAGGGT+GGG 0.610172 3_2:+62323544 None:intergenic
TGAATGTCCAACCATTACAA+TGG 0.613092 3_2:+62322303 None:intergenic
CCACCGGTTAGTATATTCAC+CGG 0.615355 3_2:+62322110 None:intergenic
GGCCACGTTATATGTGAAGA+GGG 0.615450 3_2:+62323540 None:intergenic
CACGTTATATGTGAAGAGGG+TGG 0.618052 3_2:+62323543 None:intergenic
GGTAAGAGATGGGAAAACAA+TGG 0.619269 3_2:-62321859 Msa0415830:CDS
ACTTGGGGTGTAGCTGCAAG+AGG 0.619778 3_2:-62322281 Msa0415830:CDS
AGGCCACGTTATATGTGAAG+AGG 0.621771 3_2:+62323539 None:intergenic
TAAGAGATGGGAAAACAATG+GGG 0.626561 3_2:-62321857 Msa0415830:CDS
GATGCTGAAAGCGCGACAAG+GGG 0.626984 3_2:-62321940 Msa0415830:CDS
TCGCCTAGCCGGATTCCGGT+GGG 0.628633 3_2:+62322548 None:intergenic
GATGCAGTGAAACTTGTATG+TGG 0.628757 3_2:+62323590 None:intergenic
AATATTGAGAGCACGGAGGG+AGG 0.632194 3_2:+62323234 None:intergenic
GATGACATAAACACTCCCAC+CGG 0.634917 3_2:-62322563 Msa0415830:CDS
CTTAGTGTCACAAAAGCACA+AGG 0.636960 3_2:+62321561 None:intergenic
TTCTCAAGTAGGGACGCCGG+GGG 0.637975 3_2:+62322080 None:intergenic
TGTTGGCCGCATTGAGACGG+TGG 0.638475 3_2:+62322732 None:intergenic
CACCATTCTTCGACACTCTG+AGG 0.640216 3_2:-62322705 Msa0415830:CDS
AATGGTTGGACATTCACTTG+GGG 0.644019 3_2:-62322296 Msa0415830:CDS
CACCCTCTTCACATATAACG+TGG 0.645497 3_2:-62323542 Msa0415830:five_prime_UTR
AAAGATGTGATTATTTCAGG+AGG 0.649768 3_2:-62321687 Msa0415830:CDS
TACTTAAATAAGCACCTCTG+TGG 0.656289 3_2:+62322393 None:intergenic
ATGGTCTGACTGAGGCAACA+GGG 0.656587 3_2:-62322022 Msa0415830:CDS
ATCTTAGGTACCATAAAGTG+TGG 0.661614 3_2:+62321462 None:intergenic
CCGGTGAATATACTAACCGG+TGG 0.668788 3_2:-62322110 Msa0415830:CDS
GTGGAAGTTATAGTATACCA+AGG 0.670695 3_2:+62323609 None:intergenic
AGGGAAGTGGAATCATGATG+GGG 0.670807 3_2:-62321821 Msa0415830:CDS
GTGGTTAAGAATGAGATTAG+GGG 0.674481 3_2:+62323472 None:intergenic
GACACTAAGGAAGAATGAGG+AGG 0.677688 3_2:-62321547 Msa0415830:CDS
TGGGGTGTAGCTGCAAGAGG+AGG 0.680125 3_2:-62322278 Msa0415830:CDS
GGTTAAGAATGAGATTAGGG+GGG 0.681147 3_2:+62323474 None:intergenic
GGTTCCTTCATGGATGACTG+AGG 0.686748 3_2:+62323303 None:intergenic
TGTGTTACATGAAAACCAAG+TGG 0.709272 3_2:+62322050 None:intergenic
GGTGTTGTTTATAGCCACAG+AGG 0.712162 3_2:-62322407 Msa0415830:CDS
ACATGCTTATGGTCTGACTG+AGG 0.729298 3_2:-62322030 Msa0415830:CDS
TTGCAATATTGAGAGCACGG+AGG 0.733139 3_2:+62323230 None:intergenic
CATCAACCACCGTCTCAATG+CGG 0.733801 3_2:-62322738 Msa0415830:CDS
GCAATGCCACATCCAAAATG+GGG 0.748056 3_2:-62321591 Msa0415830:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATAATGTTGAAAATAAT+GGG + chr3_2:62322436-62322455 None:intergenic 10.0%
!! TAAAATAATGTTGAAAATAA+TGG + chr3_2:62322437-62322456 None:intergenic 10.0%
!!! ATTATTTTCAACATTATTTT+AGG - chr3_2:62322436-62322455 Msa0415830:CDS 10.0%
!! GAGATTTATAAAAACTAAAT+TGG - chr3_2:62321743-62321762 Msa0415830:CDS 15.0%
!! AAAAAGTTCTTTATATATTG+TGG + chr3_2:62323498-62323517 None:intergenic 15.0%
!! AAATGACTCAAATTAAATTA+TGG + chr3_2:62323583-62323602 None:intergenic 15.0%
!! ATAGAAAATTTCATGTGATT+GGG + chr3_2:62321101-62321120 None:intergenic 20.0%
!! TATAGAAAATTTCATGTGAT+TGG + chr3_2:62321102-62321121 None:intergenic 20.0%
!! TATTACAATATTTGATACTG+CGG + chr3_2:62321662-62321681 None:intergenic 20.0%
!!! TGGTTTTTGTTTAATAAAAC+AGG - chr3_2:62321763-62321782 Msa0415830:CDS 20.0%
!! TATACATAAAGATGGTTATT+TGG - chr3_2:62322876-62322895 Msa0415830:intron 20.0%
!! GTTATTTGGAAATTAAAGAT+AGG - chr3_2:62322890-62322909 Msa0415830:intron 20.0%
!!! TTATGATTGACTTGATTATT+AGG + chr3_2:62323279-62323298 None:intergenic 20.0%
!! AAATTATGGAAGATATAACT+AGG + chr3_2:62323569-62323588 None:intergenic 20.0%
! CTTCATAGTCACTAAATTAA+TGG - chr3_2:62321035-62321054 Msa0415830:three_prime_UTR 25.0%
!! AAATGAGAAATTTTGTGTTG+TGG + chr3_2:62321153-62321172 None:intergenic 25.0%
! CAAAATGCAGTATCAAATAT+TGG + chr3_2:62321638-62321657 None:intergenic 25.0%
!! AATAAAACAGGTATCAGTTT+TGG - chr3_2:62321775-62321794 Msa0415830:CDS 25.0%
! GATGTGTAATTCAATGTAAT+TGG + chr3_2:62322154-62322173 None:intergenic 25.0%
! ATTACATTGAATTACACATC+AGG - chr3_2:62322154-62322173 Msa0415830:CDS 25.0%
! TGTCACATTATAGAGATTTA+TGG + chr3_2:62322398-62322417 None:intergenic 25.0%
!!! TTTTAAAGATAAAGAAGCGA+CGG - chr3_2:62322807-62322826 Msa0415830:CDS 25.0%
! TCTAAAGATGTGATTATTTC+AGG - chr3_2:62322913-62322932 Msa0415830:intron 25.0%
! ATGAGATAATTACCTATTGT+AGG - chr3_2:62323109-62323128 Msa0415830:intron 25.0%
! TCATAATAATGACCAGATTA+TGG - chr3_2:62323293-62323312 Msa0415830:CDS 25.0%
TGTGGTTAAGAATGAGATTA+GGG + chr3_2:62321135-62321154 None:intergenic 30.0%
TTGTGGTTAAGAATGAGATT+AGG + chr3_2:62321136-62321155 None:intergenic 30.0%
GTAACTACAACTAATTCCAA+TGG - chr3_2:62321190-62321209 Msa0415830:three_prime_UTR 30.0%
TGATATCATTTCCTAGATTG+CGG + chr3_2:62321600-62321619 None:intergenic 30.0%
ATTCGTATCAAAAGCAAAAG+AGG - chr3_2:62321946-62321965 Msa0415830:CDS 30.0%
TTCTTCCATGAGTAATCTTA+AGG + chr3_2:62321972-62321991 None:intergenic 30.0%
ATTTCTTCAGGAAGGTAATT+TGG + chr3_2:62322115-62322134 None:intergenic 30.0%
CATTCATCTTGAATTTCTTC+AGG + chr3_2:62322127-62322146 None:intergenic 30.0%
CTGAAGAAATTCAAGATGAA+TGG - chr3_2:62322125-62322144 Msa0415830:CDS 30.0%
! AGTACTTTGAGTTTAATCCT+TGG - chr3_2:62322229-62322248 Msa0415830:CDS 30.0%
! TTTGAGTTTAATCCTTGGTT+GGG - chr3_2:62322234-62322253 Msa0415830:CDS 30.0%
TTACCTATGTTCCATTGTAA+TGG - chr3_2:62322289-62322308 Msa0415830:CDS 30.0%
AAAGAGAGTCATAAAATCTC+CGG - chr3_2:62322474-62322493 Msa0415830:CDS 30.0%
TTTCATGTAACACATGCTTA+TGG - chr3_2:62322562-62322581 Msa0415830:CDS 30.0%
TGTGAAGAATCTTGAAACAA+TGG - chr3_2:62322714-62322733 Msa0415830:CDS 30.0%
!! GTTGGTGTTATACATAAAGA+TGG - chr3_2:62322868-62322887 Msa0415830:intron 30.0%
AAAGATGTGATTATTTCAGG+AGG - chr3_2:62322916-62322935 Msa0415830:intron 30.0%
TGTTCTTTATAGTCATCCTA+AGG - chr3_2:62322969-62322988 Msa0415830:intron 30.0%
!! TGATTTTTGTTGTGTTACTG+AGG - chr3_2:62323086-62323105 Msa0415830:intron 30.0%
TGGTAAATTCTTCCTACAAT+AGG + chr3_2:62323124-62323143 None:intergenic 30.0%
GAAGAATTTACCACACTTTA+TGG - chr3_2:62323131-62323150 Msa0415830:intron 30.0%
!!! ACCTAAGATGGTTGTTTTTA+TGG - chr3_2:62323155-62323174 Msa0415830:intron 30.0%
TCCATAAAAACAACCATCTT+AGG + chr3_2:62323159-62323178 None:intergenic 30.0%
!!! TAAGATGGTTGTTTTTATGG+AGG - chr3_2:62323158-62323177 Msa0415830:intron 30.0%
GATTTACCAAAGACTTTAAC+AGG - chr3_2:62323180-62323199 Msa0415830:intron 30.0%
ATCTTACCTGTTAAAGTCTT+TGG + chr3_2:62323189-62323208 None:intergenic 30.0%
TTCACACTTCAACAATTTGA+GGG - chr3_2:62323413-62323432 Msa0415830:exon 30.0%
GAAACAACTAACAAGAAAGT+TGG + chr3_2:62323526-62323545 None:intergenic 30.0%
GTGGAAGTTATAGTATACCA+AGG + chr3_2:62320997-62321016 None:intergenic 35.0%
! TATAACGTGGCCTTCAATTT+TGG - chr3_2:62321074-62321093 Msa0415830:three_prime_UTR 35.0%
TGGTTAAGAATGAGATTAGG+GGG + chr3_2:62321133-62321152 None:intergenic 35.0%
GTGGTTAAGAATGAGATTAG+GGG + chr3_2:62321134-62321153 None:intergenic 35.0%
!!! CATTTTTTTCCCTCTCACTT+AGG - chr3_2:62321168-62321187 Msa0415830:three_prime_UTR 35.0%
TTGTAGTTACCTAAGTGAGA+GGG + chr3_2:62321180-62321199 None:intergenic 35.0%
!! CATTTTGGTAGGTTATCCAT+TGG + chr3_2:62321209-62321228 None:intergenic 35.0%
!!! GTATAGTTTGCTCGACATTT+TGG + chr3_2:62321224-62321243 None:intergenic 35.0%
GAAAGTTAAAGGAGTGAGTA+TGG + chr3_2:62321246-62321265 None:intergenic 35.0%
GCTCTCATCAAGAAAGTTAA+AGG + chr3_2:62321257-62321276 None:intergenic 35.0%
AAGTTTGTGACCAAGTGAAA+CGG + chr3_2:62321325-62321344 None:intergenic 35.0%
TCTTTGCAATATTGAGAGCA+CGG + chr3_2:62321379-62321398 None:intergenic 35.0%
TCATACATTGCTGGAATGTT+TGG + chr3_2:62321803-62321822 None:intergenic 35.0%
AAATGCATCTCATACATTGC+TGG + chr3_2:62321812-62321831 None:intergenic 35.0%
CATCTATCACAATCACTAGT+GGG + chr3_2:62322024-62322043 None:intergenic 35.0%
TCATCTATCACAATCACTAG+TGG + chr3_2:62322025-62322044 None:intergenic 35.0%
CATCTTGAATTTCTTCAGGA+AGG + chr3_2:62322123-62322142 None:intergenic 35.0%
! TGGCTATAAACAACACCTTT+TGG + chr3_2:62322193-62322212 None:intergenic 35.0%
TACTTAAATAAGCACCTCTG+TGG + chr3_2:62322213-62322232 None:intergenic 35.0%
! CTTTGAGTTTAATCCTTGGT+TGG - chr3_2:62322233-62322252 Msa0415830:CDS 35.0%
TTTAATCCTTGGTTGGGAAA+TGG - chr3_2:62322240-62322259 Msa0415830:CDS 35.0%
TTAATCCTTGGTTGGGAAAT+GGG - chr3_2:62322241-62322260 Msa0415830:CDS 35.0%
GTAGTGAACCAGTTTATCTA+TGG - chr3_2:62322263-62322282 Msa0415830:CDS 35.0%
GGTAATGTCCATAGATAAAC+TGG + chr3_2:62322274-62322293 None:intergenic 35.0%
CAACCATTACAATGGAACAT+AGG + chr3_2:62322295-62322314 None:intergenic 35.0%
CTATGTTCCATTGTAATGGT+TGG - chr3_2:62322293-62322312 Msa0415830:CDS 35.0%
TGAATGTCCAACCATTACAA+TGG + chr3_2:62322303-62322322 None:intergenic 35.0%
TAATGGTTGGACATTCACTT+GGG - chr3_2:62322306-62322325 Msa0415830:CDS 35.0%
! TTTATGACTCTCTTTTCGCT+TGG + chr3_2:62322469-62322488 None:intergenic 35.0%
TGTGTTACATGAAAACCAAG+TGG + chr3_2:62322556-62322575 None:intergenic 35.0%
GTAAGAGATGGGAAAACAAT+GGG - chr3_2:62322745-62322764 Msa0415830:CDS 35.0%
TAAGAGATGGGAAAACAATG+GGG - chr3_2:62322746-62322765 Msa0415830:CDS 35.0%
ATCTTAGGTACCATAAAGTG+TGG + chr3_2:62323144-62323163 None:intergenic 35.0%
ACACTTTATGGTACCTAAGA+TGG - chr3_2:62323143-62323162 Msa0415830:intron 35.0%
TACCACAAAACACTTAGCTT+TGG + chr3_2:62323232-62323251 None:intergenic 35.0%
GTTCACACTTCAACAATTTG+AGG - chr3_2:62323412-62323431 Msa0415830:exon 35.0%
! GTTAGTTGTTTCCACTTAGT+AGG - chr3_2:62323534-62323553 Msa0415830:five_prime_UTR 35.0%
GATGCAGTGAAACTTGTATG+TGG + chr3_2:62321016-62321035 None:intergenic 40.0%
ACGTTATATGTGAAGAGGGT+GGG + chr3_2:62321062-62321081 None:intergenic 40.0%
GTGATTGGGACCAAAATTGA+AGG + chr3_2:62321087-62321106 None:intergenic 40.0%
GGTTAAGAATGAGATTAGGG+GGG + chr3_2:62321132-62321151 None:intergenic 40.0%
GTTGTAGTTACCTAAGTGAG+AGG + chr3_2:62321181-62321200 None:intergenic 40.0%
!! AGTTTGCTCGACATTTTGGT+AGG + chr3_2:62321220-62321239 None:intergenic 40.0%
AGTTTGTGACCAAGTGAAAC+GGG + chr3_2:62321324-62321343 None:intergenic 40.0%
CTTGGTCACAAACTTATGAC+CGG - chr3_2:62321330-62321349 Msa0415830:CDS 40.0%
! GATGCATTTTGCAGTACCTA+TGG - chr3_2:62321823-62321842 Msa0415830:CDS 40.0%
AGAGGCCTTAAGATTACTCA+TGG - chr3_2:62321964-62321983 Msa0415830:CDS 40.0%
TACGAGCAAATGGTTCATCA+TGG - chr3_2:62322085-62322104 Msa0415830:CDS 40.0%
GGTACAACTTCAGAACCAAA+AGG - chr3_2:62322175-62322194 Msa0415830:CDS 40.0%
GTAATGGTTGGACATTCACT+TGG - chr3_2:62322305-62322324 Msa0415830:CDS 40.0%
AATGGTTGGACATTCACTTG+GGG - chr3_2:62322307-62322326 Msa0415830:CDS 40.0%
TCTCCGGTGAATATACTAAC+CGG - chr3_2:62322490-62322509 Msa0415830:CDS 40.0%
! TGGCTCGATTTTCTCAAGTA+GGG + chr3_2:62322536-62322555 None:intergenic 40.0%
TTTGTGAGTGGCAGAAGAAA+TGG - chr3_2:62322614-62322633 Msa0415830:CDS 40.0%
!!! AGCATCGATTGCTCTCTTTT+CGG + chr3_2:62322649-62322668 None:intergenic 40.0%
TCTTGAAACAATGGAGAGTG+TGG - chr3_2:62322723-62322742 Msa0415830:CDS 40.0%
GGTAAGAGATGGGAAAACAA+TGG - chr3_2:62322744-62322763 Msa0415830:CDS 40.0%
AAGAGATGGGAAAACAATGG+GGG - chr3_2:62322747-62322766 Msa0415830:CDS 40.0%
AATGGGGGAGATTATGTTGA+AGG - chr3_2:62322762-62322781 Msa0415830:CDS 40.0%
ATGGGGGAGATTATGTTGAA+GGG - chr3_2:62322763-62322782 Msa0415830:CDS 40.0%
GAGATTATGTTGAAGGGAAG+TGG - chr3_2:62322769-62322788 Msa0415830:CDS 40.0%
AAGGGAAGTGGAATCATGAT+GGG - chr3_2:62322781-62322800 Msa0415830:CDS 40.0%
! TGGTTTAGAACTGGTGATGT+TGG - chr3_2:62322850-62322869 Msa0415830:intron 40.0%
!! ACAGCAGCTTCTAAAACCTT+AGG + chr3_2:62322988-62323007 None:intergenic 40.0%
TTGCAATGCCACATCCAAAA+TGG - chr3_2:62323010-62323029 Msa0415830:intron 40.0%
TGCAATGCCACATCCAAAAT+GGG - chr3_2:62323011-62323030 Msa0415830:intron 40.0%
! CTTAGTGTCACAAAAGCACA+AGG + chr3_2:62323045-62323064 None:intergenic 40.0%
! CTTGTGCTTTTGTGACACTA+AGG - chr3_2:62323043-62323062 Msa0415830:intron 40.0%
TGTGACACTAAGGAAGAATG+AGG - chr3_2:62323053-62323072 Msa0415830:intron 40.0%
! AGCCAAAGCTAAGTGTTTTG+TGG - chr3_2:62323227-62323246 Msa0415830:CDS 40.0%
!! ATCTGCTTCAGCTTGTTATG+TGG - chr3_2:62323463-62323482 Msa0415830:five_prime_UTR 40.0%
CACGTTATATGTGAAGAGGG+TGG + chr3_2:62321063-62321082 None:intergenic 45.0%
CACCCTCTTCACATATAACG+TGG - chr3_2:62321061-62321080 Msa0415830:three_prime_UTR 45.0%
GGCCACGTTATATGTGAAGA+GGG + chr3_2:62321066-62321085 None:intergenic 45.0%
AGGCCACGTTATATGTGAAG+AGG + chr3_2:62321067-62321086 None:intergenic 45.0%
CTTCATGGATGACTGAGGTT+CGG + chr3_2:62321298-62321317 None:intergenic 45.0%
! AAGTGAAACGGGTTCCTTCA+TGG + chr3_2:62321313-62321332 None:intergenic 45.0%
ATGAAGGAACCCGTTTCACT+TGG - chr3_2:62321312-62321331 Msa0415830:CDS 45.0%
! TGCAATATTGAGAGCACGGA+GGG + chr3_2:62321375-62321394 None:intergenic 45.0%
! TTGCAATATTGAGAGCACGG+AGG + chr3_2:62321376-62321395 None:intergenic 45.0%
! CATTTTGCAGTACCTATGGC+CGG - chr3_2:62321827-62321846 Msa0415830:CDS 45.0%
TCGAAGAATGGTGGCTATGT+TGG + chr3_2:62321891-62321910 None:intergenic 45.0%
GATGACATAAACACTCCCAC+CGG - chr3_2:62322040-62322059 Msa0415830:CDS 45.0%
!! GGTGTTGTTTATAGCCACAG+AGG - chr3_2:62322196-62322215 Msa0415830:CDS 45.0%
! CCACCGGTTAGTATATTCAC+CGG + chr3_2:62322496-62322515 None:intergenic 45.0%
! ATTTTCTCAAGTAGGGACGC+CGG + chr3_2:62322529-62322548 None:intergenic 45.0%
! GTGGCTCGATTTTCTCAAGT+AGG + chr3_2:62322537-62322556 None:intergenic 45.0%
CTTGAGAAAATCGAGCCACT+TGG - chr3_2:62322538-62322557 Msa0415830:CDS 45.0%
ACATGCTTATGGTCTGACTG+AGG - chr3_2:62322573-62322592 Msa0415830:CDS 45.0%
! ATGGAGAGTGTGGTAAGAGA+TGG - chr3_2:62322733-62322752 Msa0415830:CDS 45.0%
! TGGAGAGTGTGGTAAGAGAT+GGG - chr3_2:62322734-62322753 Msa0415830:CDS 45.0%
GAAGGGAAGTGGAATCATGA+TGG - chr3_2:62322780-62322799 Msa0415830:CDS 45.0%
AGGGAAGTGGAATCATGATG+GGG - chr3_2:62322782-62322801 Msa0415830:CDS 45.0%
GCAATGCCACATCCAAAATG+GGG - chr3_2:62323012-62323031 Msa0415830:intron 45.0%
! CTTTCACCCCATTTTGGATG+TGG + chr3_2:62323021-62323040 None:intergenic 45.0%
! CAAGGACTTTCACCCCATTT+TGG + chr3_2:62323027-62323046 None:intergenic 45.0%
GACACTAAGGAAGAATGAGG+AGG - chr3_2:62323056-62323075 Msa0415830:intron 45.0%
GACGAGATAGAGCCATAATC+TGG + chr3_2:62323308-62323327 None:intergenic 45.0%
CGAACCTCAGTCATCCATGA+AGG - chr3_2:62321296-62321315 Msa0415830:CDS 50.0%
GGTTCCTTCATGGATGACTG+AGG + chr3_2:62321303-62321322 None:intergenic 50.0%
! AATATTGAGAGCACGGAGGG+AGG + chr3_2:62321372-62321391 None:intergenic 50.0%
TAGATTGCGGTCGCTGATCT+AGG + chr3_2:62321587-62321606 None:intergenic 50.0%
TAGATCAGCGACCGCAATCT+AGG - chr3_2:62321586-62321605 Msa0415830:CDS 50.0%
! GATGGTGTTTAGGACAGCAC+CGG + chr3_2:62321849-62321868 None:intergenic 50.0%
!! GACGGTGGTTGATGGTGTTT+AGG + chr3_2:62321859-62321878 None:intergenic 50.0%
CATCAACCACCGTCTCAATG+CGG - chr3_2:62321865-62321884 Msa0415830:CDS 50.0%
CTATGTTGGCCGCATTGAGA+CGG + chr3_2:62321877-62321896 None:intergenic 50.0%
!! CTCAGAGTGTCGAAGAATGG+TGG + chr3_2:62321900-62321919 None:intergenic 50.0%
CACCATTCTTCGACACTCTG+AGG - chr3_2:62321898-62321917 Msa0415830:CDS 50.0%
TAAACACTCCCACCGGAATC+CGG - chr3_2:62322047-62322066 Msa0415830:CDS 50.0%
CGAGCTCGAATACGAGCAAA+TGG - chr3_2:62322075-62322094 Msa0415830:CDS 50.0%
CACTACCCATTTCCCAACCA+AGG + chr3_2:62322249-62322268 None:intergenic 50.0%
CCGGTGAATATACTAACCGG+TGG - chr3_2:62322493-62322512 Msa0415830:CDS 50.0%
! TTTTCTCAAGTAGGGACGCC+GGG + chr3_2:62322528-62322547 None:intergenic 50.0%
TATGGTCTGACTGAGGCAAC+AGG - chr3_2:62322580-62322599 Msa0415830:CDS 50.0%
ATGGTCTGACTGAGGCAACA+GGG - chr3_2:62322581-62322600 Msa0415830:CDS 50.0%
TGCCACTCACAAACAAGTGC+TGG + chr3_2:62322607-62322626 None:intergenic 50.0%
!! GGGGATGGTTGGTTTAGAAC+TGG - chr3_2:62322841-62322860 Msa0415830:intron 50.0%
GGACTGCTCAACCTACTAAG+TGG + chr3_2:62323548-62323567 None:intergenic 50.0%
!! TTTAGGACAGCACCGGCCAT+AGG + chr3_2:62321842-62321861 None:intergenic 55.0%
CGCATTGAGACGGTGGTTGA+TGG + chr3_2:62321867-62321886 None:intergenic 55.0%
!! CGCCTCAGAGTGTCGAAGAA+TGG + chr3_2:62321903-62321922 None:intergenic 55.0%
ACTTGGGGTGTAGCTGCAAG+AGG - chr3_2:62322322-62322341 Msa0415830:CDS 55.0%
TTTCTCAAGTAGGGACGCCG+GGG + chr3_2:62322527-62322546 None:intergenic 55.0%
GGCCAGCACTTGTTTGTGAG+TGG - chr3_2:62322602-62322621 Msa0415830:CDS 55.0%
! TCGATGCTGAAAGCGCGACA+AGG - chr3_2:62322661-62322680 Msa0415830:CDS 55.0%
! CGATGCTGAAAGCGCGACAA+GGG - chr3_2:62322662-62322681 Msa0415830:CDS 55.0%
! GATGCTGAAAGCGCGACAAG+GGG - chr3_2:62322663-62322682 Msa0415830:CDS 55.0%
GAAGCGACGGCGAAAGCTTT+CGG - chr3_2:62322820-62322839 Msa0415830:CDS 55.0%
AAGCGACGGCGAAAGCTTTC+GGG - chr3_2:62322821-62322840 Msa0415830:CDS 55.0%
CGAAAGCTTTCGGGGATGGT+TGG - chr3_2:62322830-62322849 Msa0415830:intron 55.0%
TGTTGGCCGCATTGAGACGG+TGG + chr3_2:62321874-62321893 None:intergenic 60.0%
CGTATTCGAGCTCGCCTAGC+CGG + chr3_2:62322069-62322088 None:intergenic 60.0%
TGGGGTGTAGCTGCAAGAGG+AGG - chr3_2:62322325-62322344 Msa0415830:CDS 60.0%
TTCTCAAGTAGGGACGCCGG+GGG + chr3_2:62322526-62322545 None:intergenic 60.0%
AGCGACGGCGAAAGCTTTCG+GGG - chr3_2:62322822-62322841 Msa0415830:intron 60.0%
ACGGCGAAAGCTTTCGGGGA+TGG - chr3_2:62322826-62322845 Msa0415830:intron 60.0%
ACTCCCACCGGAATCCGGCT+AGG - chr3_2:62322052-62322071 Msa0415830:CDS 65.0%
TCGCCTAGCCGGATTCCGGT+GGG + chr3_2:62322058-62322077 None:intergenic 65.0%
GAGCTCGCCTAGCCGGATTC+CGG + chr3_2:62322062-62322081 None:intergenic 65.0%
AGGAAGCGAGGCGGCGACAC+CGG + chr3_2:62321352-62321371 None:intergenic 70.0%
CACGGAGGGAGGAAGCGAGG+CGG + chr3_2:62321361-62321380 None:intergenic 70.0%
GAGCACGGAGGGAGGAAGCG+AGG + chr3_2:62321364-62321383 None:intergenic 70.0%
CTCGCCTAGCCGGATTCCGG+TGG + chr3_2:62322059-62322078 None:intergenic 70.0%
! AACCGGTGGAGCACCACCCC+CGG - chr3_2:62322507-62322526 Msa0415830:CDS 70.0%
TCAAGTAGGGACGCCGGGGG+TGG + chr3_2:62322523-62322542 None:intergenic 70.0%
! CGCCGGGGGTGGTGCTCCAC+CGG + chr3_2:62322512-62322531 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 62320987 62323638 62320987 ID=Msa0415830;Name=Msa0415830
chr3_2 mRNA 62320987 62323638 62320987 ID=Msa0415830-mRNA-1;Parent=Msa0415830;Name=Msa0415830-mRNA-1;_AED=0.01;_eAED=0.01;_QI=222|1|1|1|1|1|2|306|581
chr3_2 exon 62320987 62322840 62320987 ID=Msa0415830-mRNA-1:exon:13392;Parent=Msa0415830-mRNA-1
chr3_2 exon 62323219 62323638 62323219 ID=Msa0415830-mRNA-1:exon:13391;Parent=Msa0415830-mRNA-1
chr3_2 five_prime_UTR 62323417 62323638 62323417 ID=Msa0415830-mRNA-1:five_prime_utr;Parent=Msa0415830-mRNA-1
chr3_2 CDS 62323219 62323416 62323219 ID=Msa0415830-mRNA-1:cds;Parent=Msa0415830-mRNA-1
chr3_2 CDS 62321293 62322840 62321293 ID=Msa0415830-mRNA-1:cds;Parent=Msa0415830-mRNA-1
chr3_2 three_prime_UTR 62320987 62321292 62320987 ID=Msa0415830-mRNA-1:three_prime_utr;Parent=Msa0415830-mRNA-1
Gene Sequence

>Msa0415830

ATGGATAACCTACCAAAATGTCGAGCAAACTATACCATACTCACTCCTTTAACTTTCTTGATGAGAGCTTCTGCATCTTATGCAAACCGAACCTCAGTCATCCATGAAGGAACCCGTTTCACTTGGTCACAAACTTATGACCGGTGTCGCCGCCTCGCTTCCTCCCTCCGTGCTCTCAATATTGCAAAGAATGATGTTGTATCAGTTTTGGCACCAAACATTCCAGCAATGTATGAGATGCATTTTGCAGTACCTATGGCCGGTGCTGTCCTAAACACCATCAACCACCGTCTCAATGCGGCCAACATAGCCACCATTCTTCGACACTCTGAGGCGAAAGTCTTCTTCGTAGACTACGAATTCGTATCAAAAGCAAAAGAGGCCTTAAGATTACTCATGGAAGAAAAAGATCAAAAAGAACAATACTCATCACTCCCACTAGTGATTGTGATAGATGACATAAACACTCCCACCGGAATCCGGCTAGGCGAGCTCGAATACGAGCAAATGGTTCATCATGGTAATCCAAATTACCTTCCTGAAGAAATTCAAGATGAATGGTCACCAATTACATTGAATTACACATCAGGTACAACTTCAGAACCAAAAGGTGTTGTTTATAGCCACAGAGGTGCTTATTTAAGTACTTTGAGTTTAATCCTTGGTTGGGAAATGGGTAGTGAACCAGTTTATCTATGGACATTACCTATGTTCCATTGTAATGGTTGGACATTCACTTGGGGTGTAGCTGCAAGAGGAGGTACTAATATTTGTATCAGAAACACTGCAGCATCTGATATATATAGAGCCATAAATCTCTATAATGTGACACACATGTGTTGCGCACCCATTATTTTCAACATTATTTTAGGCGCGAAACCAAGCGAAAAGAGAGTCATAAAATCTCCGGTGAATATACTAACCGGTGGAGCACCACCCCCGGCGTCCCTACTTGAGAAAATCGAGCCACTTGGTTTTCATGTAACACATGCTTATGGTCTGACTGAGGCAACAGGGCCAGCACTTGTTTGTGAGTGGCAGAAGAAATGGAATGTGTTGCCGAAAAGAGAGCAATCGATGCTGAAAGCGCGACAAGGGGTTAGTGTTTTGACACTTGCTGATGTTGATGTGAAGAATCTTGAAACAATGGAGAGTGTGGTAAGAGATGGGAAAACAATGGGGGAGATTATGTTGAAGGGAAGTGGAATCATGATGGGGTATTTTAAAGATAAAGAAGCGACGGCGAAAGCTTTCGGGGATGGTTGGTTTAGAACTGGTGATGTTGGTGTTATACATAAAGATGGTTATTTGGAAATTAAAGATAGGTCTAAAGATGTGATTATTTCAGGAGGTGAAAATATTAGTAGTGTTGAAGTTGAAAATGTTCTTTATAGTCATCCTAAGGTTTTAGAAGCTGCTGTTGTTGCAATGCCACATCCAAAATGGGGTGAAAGTCCTTGTGCTTTTGTGACACTAAGGAAGAATGAGGAGGAAAAAAGTGATTTTTGTTGTGTTACTGAGGATGAGATAATTACCTATTGTAGGAAGAATTTACCACACTTTATGGTACCTAAGATGGTTGTTTTTATGGAGGATTTACCAAAGACTTTAACAGGTAAGATTCAGAAATTTGAATTAAGAGCCAAAGCTAAGTGTTTTGTGGTAAATGATGAGAAGAATAAGAAGAAGCCTAATAATCAAGTCAATCATAATAATGACCAGATTATGGCTCTATCTCGTCTTTGA
Protein sequence

>Msa0415830

MDNLPKCRANYTILTPLTFLMRASASYANRTSVIHEGTRFTWSQTYDRCRRLASSLRALNIAKNDVVSVLAPNIPAMYEMHFAVPMAGAVLNTINHRLNAANIATILRHSEAKVFFVDYEFVSKAKEALRLLMEEKDQKEQYSSLPLVIVIDDINTPTGIRLGELEYEQMVHHGNPNYLPEEIQDEWSPITLNYTSGTTSEPKGVVYSHRGAYLSTLSLILGWEMGSEPVYLWTLPMFHCNGWTFTWGVAARGGTNICIRNTAASDIYRAINLYNVTHMCCAPIIFNIILGAKPSEKRVIKSPVNILTGGAPPPASLLEKIEPLGFHVTHAYGLTEATGPALVCEWQKKWNVLPKREQSMLKARQGVSVLTLADVDVKNLETMESVVRDGKTMGEIMLKGSGIMMGYFKDKEATAKAFGDGWFRTGDVGVIHKDGYLEIKDRSKDVIISGGENISSVEVENVLYSHPKVLEAAVVAMPHPKWGESPCAFVTLRKNEEEKSDFCCVTEDEIITYCRKNLPHFMVPKMVVFMEDLPKTLTGKIQKFELRAKAKCFVVNDEKNKKKPNNQVNHNNDQIMALSRL*