AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0458110


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0458110 MtrunA17_Chr3g0105401 98.291 351 6 0 1 351 1 351 0.0 719
Msa0458110 MtrunA17_Chr3g0120861 63.830 329 118 1 23 351 33 360 8.36e-159 449
Msa0458110 MtrunA17_Chr5g0438641 60.684 351 132 3 1 351 10 354 1.11e-156 443
Msa0458110 MtrunA17_Chr5g0438621 58.286 350 145 1 1 350 3 351 1.62e-155 440
Msa0458110 MtrunA17_Chr5g0438631 58.974 351 142 2 1 350 1 350 3.87e-155 439
Msa0458110 MtrunA17_Chr8g0341001 43.391 348 191 4 1 343 1 347 8.35e-98 294
Msa0458110 MtrunA17_Chr1g0156931 42.945 326 183 3 26 351 39 361 6.31e-96 289
Msa0458110 MtrunA17_Chr1g0156921 40.419 334 198 1 18 351 32 364 7.40e-96 289
Msa0458110 MtrunA17_Chr8g0371491 39.773 352 205 3 6 351 8 358 5.20e-95 286
Msa0458110 MtrunA17_Chr2g0330781 44.000 325 176 4 26 347 29 350 7.37e-94 283
Msa0458110 MtrunA17_Chr5g0432101 40.857 350 192 6 14 350 9 356 1.68e-92 280
Msa0458110 MtrunA17_Chr1g0156901 38.857 350 212 2 1 350 23 370 3.73e-92 280
Msa0458110 MtrunA17_Chr5g0405821 40.960 354 196 6 6 350 17 366 2.65e-90 275
Msa0458110 MtrunA17_Chr3g0142921 42.945 326 181 5 27 350 35 357 1.40e-88 270
Msa0458110 MtrunA17_Chr1g0156891 39.722 360 205 5 1 351 9 365 5.98e-88 269
Msa0458110 MtrunA17_Chr8g0371471 39.385 325 196 1 27 351 40 363 3.91e-87 266
Msa0458110 MtrunA17_Chr1g0156911 37.037 351 219 2 1 351 10 358 4.96e-87 266
Msa0458110 MtrunA17_Chr3g0142941 38.769 325 197 2 26 350 45 367 7.97e-87 266
Msa0458110 MtrunA17_Chr4g0046151 39.886 351 198 7 5 347 14 359 8.66e-87 266
Msa0458110 MtrunA17_Chr5g0405831 37.183 355 215 4 1 350 14 365 5.22e-86 264
Msa0458110 MtrunA17_Chr8g0371481 38.650 326 198 2 27 351 40 364 6.38e-85 261
Msa0458110 MtrunA17_Chr2g0283191 40.805 348 182 8 1 333 13 351 6.30e-84 259
Msa0458110 MtrunA17_Chr2g0320671 39.884 346 199 4 2 343 4 344 1.43e-83 257
Msa0458110 MtrunA17_Chr4g0027521 41.124 338 191 6 11 343 10 344 2.13e-77 241
Msa0458110 MtrunA17_Chr1g0157001 36.825 315 194 3 33 346 41 351 3.42e-77 241
Msa0458110 MtrunA17_Chr5g0437421 36.826 334 201 4 25 351 29 359 2.04e-74 234
Msa0458110 MtrunA17_Chr1g0189901 36.202 337 210 5 8 342 11 344 4.07e-73 231
Msa0458110 MtrunA17_Chr7g0275011 35.511 352 216 8 1 344 1 349 4.81e-72 228
Msa0458110 MtrunA17_Chr7g0275021 35.260 346 217 6 2 344 8 349 1.12e-71 227
Msa0458110 MtrunA17_Chr1g0189931 37.107 318 195 5 28 343 32 346 1.77e-70 224
Msa0458110 MtrunA17_Chr7g0274991 36.909 317 187 6 28 338 33 342 6.80e-69 220
Msa0458110 MtrunA17_Chr1g0182811 35.465 344 208 8 4 339 8 345 1.52e-68 219
Msa0458110 MtrunA17_Chr7g0275001 36.677 319 198 4 28 344 25 341 3.55e-68 218
Msa0458110 MtrunA17_Chr4g0008851 36.919 344 207 8 3 340 6 345 2.29e-67 216
Msa0458110 MtrunA17_Chr3g0092131 36.562 320 192 7 31 345 26 339 5.52e-66 212
Msa0458110 MtrunA17_Chr6g0457921 37.261 314 191 6 30 340 31 341 6.29e-66 212
Msa0458110 MtrunA17_Chr5g0434621 36.977 311 189 6 31 339 28 333 3.28e-64 207
Msa0458110 MtrunA17_Chr4g0060811 36.478 318 195 6 31 345 30 343 1.27e-63 206
Msa0458110 MtrunA17_Chr2g0301641 35.127 353 209 9 4 342 12 358 2.72e-63 206
Msa0458110 MtrunA17_Chr4g0068441 35.569 343 210 8 7 344 15 351 7.10e-63 204
Msa0458110 MtrunA17_Chr8g0374101 31.988 347 226 7 6 344 15 359 4.28e-62 202
Msa0458110 MtrunA17_Chr1g0189891 37.152 323 183 9 28 343 29 338 7.80e-62 201
Msa0458110 MtrunA17_Chr3g0077571 34.018 341 215 7 1 339 3 335 1.01e-61 201
Msa0458110 MtrunA17_Chr3g0131321 34.731 334 209 6 14 340 17 348 1.22e-61 202
Msa0458110 MtrunA17_Chr2g0285061 34.018 341 218 6 2 339 6 342 1.43e-61 201
Msa0458110 MtrunA17_Chr2g0294311 33.143 350 219 7 6 344 11 356 1.57e-61 201
Msa0458110 MtrunA17_Chr2g0294301 35.417 336 207 7 14 344 21 351 1.00e-60 199
Msa0458110 MtrunA17_Chr3g0086641 36.792 318 193 6 25 339 35 347 1.07e-60 199
Msa0458110 MtrunA17_Chr5g0396511 36.076 316 187 8 31 339 49 356 3.86e-60 197
Msa0458110 MtrunA17_Chr4g0017431 34.412 340 210 7 6 339 9 341 6.63e-60 196
Msa0458110 MtrunA17_Chr8g0380041 35.224 335 207 7 9 339 12 340 2.15e-58 192
Msa0458110 MtrunA17_Chr7g0215961 30.814 344 219 7 4 344 8 335 1.42e-56 187
Msa0458110 MtrunA17_Chr8g0380031 34.706 340 204 9 3 340 61 384 9.31e-55 184
Msa0458110 MtrunA17_Chr3g0099151 33.435 329 199 10 25 342 84 403 1.81e-52 179
Msa0458110 MtrunA17_Chr5g0444401 32.647 340 214 8 6 337 6 338 2.68e-52 177
Msa0458110 MtrunA17_Chr8g0344941 34.277 318 197 7 28 339 41 352 3.39e-52 177
Msa0458110 MtrunA17_Chr3g0099161 34.242 330 194 11 25 342 89 407 7.15e-52 177
Msa0458110 MtrunA17_Chr4g0027571 41.860 215 120 3 131 343 3 214 2.86e-50 167
Msa0458110 MtrunA17_Chr8g0349341 31.385 325 198 9 28 342 37 346 7.57e-50 171
Msa0458110 MtrunA17_Chr2g0284951 35.569 343 195 12 4 339 9 332 2.54e-49 169
Msa0458110 MtrunA17_Chr2g0284991 34.000 350 209 12 4 346 9 343 8.81e-49 168
Msa0458110 MtrunA17_Chr2g0284921 33.438 320 195 8 25 339 31 337 1.40e-47 164
Msa0458110 MtrunA17_Chr8g0370951 29.888 358 226 11 1 342 1 349 3.11e-47 164
Msa0458110 MtrunA17_Chr8g0349321 30.435 322 205 9 28 342 37 346 3.57e-47 163
Msa0458110 MtrunA17_Chr3g0085231 31.609 348 201 10 5 340 8 330 3.68e-47 163
Msa0458110 MtrunA17_Chr8g0344931 32.000 350 213 10 1 339 4 339 3.77e-47 163
Msa0458110 MtrunA17_Chr3g0077581 34.251 327 193 12 25 339 33 349 4.27e-47 163
Msa0458110 MtrunA17_Chr8g0370981 29.040 396 220 9 4 347 19 405 5.82e-47 164
Msa0458110 MtrunA17_Chr2g0285001 33.618 351 207 13 1 339 1 337 1.19e-46 162
Msa0458110 MtrunA17_Chr3g0099231 28.367 349 236 7 1 342 1 342 2.56e-46 162
Msa0458110 MtrunA17_Chr5g0420811 31.519 349 220 10 5 349 10 343 3.53e-45 158
Msa0458110 MtrunA17_Chr3g0085881 32.915 319 192 10 25 339 30 330 4.38e-43 152
Msa0458110 MtrunA17_Chr8g0349301 31.359 287 181 8 28 311 37 310 3.76e-42 149
Msa0458110 MtrunA17_Chr7g0229581 47.552 143 71 2 203 343 7 147 1.32e-39 137
Msa0458110 MtrunA17_Chr7g0229591 40.678 177 104 1 26 202 28 203 7.26e-37 132
Msa0458110 MtrunA17_Chr2g0284941 30.000 340 198 11 1 332 1 308 8.68e-37 135
Msa0458110 MtrunA17_Chr8g0349331 27.640 322 184 7 28 342 35 314 5.37e-35 130
Msa0458110 MtrunA17_Chr4g0018571 44.755 143 79 0 201 343 28 170 3.90e-31 116
Msa0458110 MtrunA17_Chr8g0370961 29.224 219 148 3 122 339 11 223 7.63e-31 117
Msa0458110 MtrunA17_Chr8g0381581 25.197 381 234 13 1 346 11 375 3.91e-29 115
Msa0458110 MtrunA17_Chr1g0160031 28.107 338 203 13 27 338 38 361 5.09e-29 115
Msa0458110 MtrunA17_Chr1g0160011 29.254 335 203 12 27 338 39 362 6.93e-29 115
Msa0458110 MtrunA17_Chr7g0271551 26.331 338 215 11 23 344 31 350 3.52e-28 112
Msa0458110 MtrunA17_Chr6g0469521 43.651 126 67 2 201 324 29 152 6.69e-28 106
Msa0458110 MtrunA17_Chr1g0160101 26.902 368 211 14 9 338 20 367 8.18e-28 112
Msa0458110 MtrunA17_Chr6g0450731 25.753 365 229 12 1 344 4 347 9.78e-28 111
Msa0458110 MtrunA17_Chr7g0254461 26.509 381 227 15 1 344 13 377 1.47e-27 111
Msa0458110 MtrunA17_Chr1g0159991 29.032 341 198 14 27 338 35 360 2.88e-27 110
Msa0458110 MtrunA17_Chr7g0226911 25.753 365 208 14 21 344 28 370 1.19e-26 108
Msa0458110 MtrunA17_Chr7g0275291 25.886 367 226 11 3 339 6 356 1.62e-26 108
Msa0458110 MtrunA17_Chr1g0159981 27.072 362 228 12 2 338 20 370 1.67e-26 108
Msa0458110 MtrunA17_Chr2g0283511 28.228 333 210 12 33 344 36 360 1.68e-26 108
Msa0458110 MtrunA17_Chr7g0273101 26.377 345 213 11 27 343 28 359 1.84e-26 108
Msa0458110 MtrunA17_Chr1g0191461 25.729 377 226 14 5 346 6 363 1.95e-26 108
Msa0458110 MtrunA17_Chr2g0283481 27.855 359 222 15 12 343 25 373 4.71e-26 107
Msa0458110 MtrunA17_Chr6g0469511 46.087 115 62 0 26 140 28 142 4.92e-26 101
Msa0458110 MtrunA17_Chr1g0159971 27.193 342 201 12 28 338 47 371 5.74e-26 107
Msa0458110 MtrunA17_Chr3g0112821 28.947 342 215 13 20 344 20 350 2.25e-25 105
Msa0458110 MtrunA17_Chr1g0178941 27.697 343 203 11 29 351 41 358 3.68e-25 104
Msa0458110 MtrunA17_Chr6g0463261 40.984 122 71 1 81 202 4 124 4.12e-25 98.6
Msa0458110 MtrunA17_Chr5g0440501 25.463 216 154 2 130 339 13 227 4.29e-25 102
Msa0458110 MtrunA17_Chr6g0450721 25.138 362 233 11 1 344 4 345 1.25e-24 102
Msa0458110 MtrunA17_Chr6g0450701 26.121 379 225 15 1 343 4 363 1.30e-24 103
Msa0458110 MtrunA17_Chr7g0266061 29.730 333 198 13 22 342 36 344 1.81e-24 102
Msa0458110 MtrunA17_Chr3g0104821 28.116 345 218 13 21 344 37 372 2.37e-24 102
Msa0458110 MtrunA17_Chr6g0450711 26.525 377 230 12 1 344 85 447 2.55e-24 103
Msa0458110 MtrunA17_Chr8g0347751 26.087 345 205 14 28 339 36 363 4.76e-24 101
Msa0458110 MtrunA17_Chr2g0317271 28.324 346 207 12 18 344 20 343 4.80e-24 101
Msa0458110 MtrunA17_Chr0c01g0489581 28.324 346 207 12 18 344 20 343 7.87e-24 100
Msa0458110 MtrunA17_Chr2g0317261 27.671 365 220 14 2 344 1 343 9.04e-24 100
Msa0458110 MtrunA17_Chr6g0459921 31.628 215 128 8 133 340 139 341 1.12e-23 100
Msa0458110 MtrunA17_Chr3g0093031 28.375 363 232 15 2 344 1 355 1.62e-23 100
Msa0458110 MtrunA17_Chr6g0455661 30.374 214 132 7 133 340 250 452 1.69e-23 100
Msa0458110 MtrunA17_Chr6g0455661 42.222 135 70 4 4 134 7 137 2.03e-20 92.0
Msa0458110 MtrunA17_Chr2g0283501 28.610 374 204 16 8 344 12 359 1.94e-23 99.8
Msa0458110 MtrunA17_Chr0c01g0489571 28.324 346 207 12 18 344 20 343 2.47e-23 99.4
Msa0458110 MtrunA17_Chr4g0057991 25.000 368 237 15 2 344 8 361 3.01e-23 99.4
Msa0458110 MtrunA17_Chr2g0301581 25.543 368 221 14 1 344 7 345 7.94e-23 97.8
Msa0458110 MtrunA17_Chr7g0226931 25.344 363 207 14 28 343 38 383 9.87e-23 98.2
Msa0458110 MtrunA17_Chr7g0226941 26.420 352 216 13 21 343 26 363 9.93e-23 97.8
Msa0458110 MtrunA17_Chr1g0198351 26.984 315 194 13 29 332 44 333 3.78e-22 95.9
Msa0458110 MtrunA17_Chr2g0283531 28.490 351 212 15 20 344 21 358 6.12e-22 95.5
Msa0458110 MtrunA17_Chr4g0027581 33.557 149 73 3 219 343 41 187 2.77e-21 90.5
Msa0458110 MtrunA17_Chr2g0301541 25.000 368 223 14 1 344 7 345 3.85e-21 93.2
Msa0458110 MtrunA17_Chr4g0027561 37.500 120 74 1 1 120 4 122 5.32e-21 88.2
Msa0458110 MtrunA17_Chr1g0178931 26.409 337 207 12 29 351 38 347 1.39e-20 91.3
Msa0458110 MtrunA17_Chr8g0352901 23.913 368 243 10 1 344 4 358 2.51e-20 90.9
Msa0458110 MtrunA17_Chr1g0198381 26.349 315 197 10 29 332 3 293 7.63e-20 89.0
Msa0458110 MtrunA17_Chr3g0112691 28.108 370 222 17 2 344 1 353 2.60e-19 88.2
Msa0458110 MtrunA17_Chr2g0321991 47.778 90 45 2 26 114 31 119 6.70e-19 81.6
Msa0458110 MtrunA17_Chr3g0096551 25.648 386 224 14 2 344 1 366 3.35e-18 84.7
Msa0458110 MtrunA17_Chr1g0189921 47.312 93 48 1 28 120 31 122 7.64e-18 79.7
Msa0458110 MtrunA17_Chr1g0198391 26.849 365 199 14 21 350 29 360 5.80e-17 81.3
Msa0458110 MtrunA17_Chr8g0364141 55.357 56 25 0 286 341 80 135 6.29e-17 77.0
Msa0458110 MtrunA17_Chr6g0467721 79.167 48 10 0 238 285 149 196 2.96e-16 77.0
Msa0458110 MtrunA17_Chr8g0370971 41.026 117 64 2 15 126 24 140 4.70e-16 75.1
Msa0458110 MtrunA17_Chr2g0308201 50.000 76 37 1 6 81 13 87 2.92e-15 70.5
Msa0458110 MtrunA17_Chr5g0432081 49.206 63 31 1 288 350 10 71 3.01e-14 67.4
Msa0458110 MtrunA17_Chr4g0018561 52.830 53 25 0 26 78 28 80 8.75e-13 63.9
Msa0458110 MtrunA17_Chr8g0339251 23.442 337 227 10 1 323 4 323 1.09e-12 68.2
Msa0458110 MtrunA17_Chr7g0228261 35.065 77 49 1 271 347 3 78 1.95e-12 62.8
Msa0458110 MtrunA17_Chr2g0301571 24.042 287 178 13 77 344 36 301 2.94e-12 66.6
Msa0458110 MtrunA17_Chr2g0301551 23.288 292 174 13 77 344 36 301 8.86e-12 65.5
Msa0458110 MtrunA17_Chr1g0189911 25.581 129 93 3 216 343 2 128 5.20e-11 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0458110 AT2G42990.1 59.654 347 137 3 2 347 1 345 1.84e-155 440
Msa0458110 AT2G04570.1 56.125 351 153 1 1 351 1 350 4.50e-148 422
Msa0458110 AT4G26790.1 59.939 327 130 1 24 350 25 350 8.81e-147 418
Msa0458110 AT4G26790.2 59.939 327 130 1 24 350 25 350 8.81e-147 418
Msa0458110 AT1G59406.1 41.193 352 198 4 2 349 1 347 1.75e-99 298
Msa0458110 AT1G59030.1 41.193 352 198 4 2 349 1 347 1.75e-99 298
Msa0458110 AT1G58725.1 41.193 352 198 4 2 349 1 347 1.75e-99 298
Msa0458110 AT3G14820.1 40.233 343 199 4 5 346 8 345 7.23e-95 286
Msa0458110 AT1G58520.3 41.159 328 180 4 23 349 25 340 3.79e-93 281
Msa0458110 AT1G58525.1 41.159 328 180 4 23 349 25 340 3.79e-93 281
Msa0458110 AT2G31540.1 41.104 326 189 3 27 350 34 358 7.19e-93 281
Msa0458110 AT1G06990.1 40.541 333 194 3 15 345 24 354 2.10e-92 280
Msa0458110 AT2G24560.1 41.195 318 184 3 27 342 33 349 4.10e-92 280
Msa0458110 AT3G16370.1 44.073 329 178 4 18 343 20 345 4.16e-92 279
Msa0458110 AT3G43570.1 38.746 351 179 5 2 349 1 318 4.47e-91 276
Msa0458110 AT2G30310.1 37.861 346 208 4 3 342 5 349 1.13e-89 273
Msa0458110 AT5G42170.1 40.491 326 190 2 26 351 48 369 1.85e-89 273
Msa0458110 AT5G03810.1 43.425 327 175 4 26 347 28 349 3.69e-89 272
Msa0458110 AT5G03820.1 41.408 355 194 6 2 347 4 353 6.79e-89 271
Msa0458110 AT2G30220.1 40.729 329 187 5 27 351 32 356 1.23e-88 271
Msa0458110 AT5G03820.2 41.408 355 194 6 2 347 32 381 2.80e-88 271
Msa0458110 AT2G40250.1 39.275 331 192 3 21 345 29 356 3.82e-88 270
Msa0458110 AT1G75900.1 38.192 343 210 2 9 351 24 364 3.69e-87 267
Msa0458110 AT5G22810.1 42.249 329 178 5 26 347 32 355 4.29e-87 267
Msa0458110 AT1G75880.2 37.079 356 215 2 3 350 19 373 2.59e-86 265
Msa0458110 AT1G58430.1 39.031 351 205 4 6 348 7 356 2.69e-86 265
Msa0458110 AT1G75890.2 37.822 349 208 3 7 347 19 366 6.61e-86 264
Msa0458110 AT5G45960.1 40.764 314 179 4 26 334 45 356 1.68e-85 263
Msa0458110 AT1G75890.3 37.931 348 207 3 8 347 49 395 2.17e-85 264
Msa0458110 AT1G75880.1 36.975 357 215 3 3 350 19 374 2.27e-84 260
Msa0458110 AT5G45950.1 39.877 326 189 5 26 351 38 356 1.64e-83 258
Msa0458110 AT1G20120.1 37.654 324 201 1 27 350 77 399 1.14e-82 257
Msa0458110 AT5G63170.1 41.617 334 180 5 1 333 1 320 3.24e-82 253
Msa0458110 AT1G75890.1 36.565 361 207 4 8 347 20 379 3.31e-82 255
Msa0458110 AT1G20132.1 36.335 322 204 1 26 347 59 379 2.37e-80 250
Msa0458110 AT1G20135.1 39.394 330 181 5 14 338 11 326 5.76e-77 240
Msa0458110 AT3G53100.1 37.758 339 206 2 13 347 10 347 1.21e-76 239
Msa0458110 AT3G43550.1 41.237 291 162 4 2 288 1 286 2.83e-76 236
Msa0458110 AT1G73610.1 37.117 326 189 4 26 350 33 343 6.62e-75 235
Msa0458110 AT1G23500.1 39.420 345 192 4 1 344 10 338 7.64e-74 232
Msa0458110 AT2G24560.2 41.045 268 156 2 27 292 33 300 4.44e-73 229
Msa0458110 AT4G28780.1 33.333 351 227 4 2 347 1 349 4.07e-72 229
Msa0458110 AT1G20130.2 34.337 332 204 4 26 347 182 509 5.06e-70 228
Msa0458110 AT1G20130.1 34.337 332 204 4 26 347 202 529 9.08e-70 227
Msa0458110 AT3G04290.1 35.942 345 204 7 5 343 10 343 1.08e-68 220
Msa0458110 AT3G50400.1 35.735 347 212 8 6 343 12 356 5.91e-67 216
Msa0458110 AT1G75920.2 36.337 344 205 4 3 344 5 336 6.69e-67 214
Msa0458110 AT1G75910.1 34.877 324 199 2 23 344 23 336 9.50e-66 211
Msa0458110 AT2G23540.1 36.280 328 199 7 24 343 44 369 2.25e-65 212
Msa0458110 AT5G33370.1 35.535 318 200 5 28 343 30 344 4.93e-65 210
Msa0458110 AT1G74460.1 35.849 318 197 6 31 345 26 339 6.60e-63 205
Msa0458110 AT1G75920.1 34.637 358 205 5 4 344 1 346 3.09e-62 202
Msa0458110 AT5G37690.1 33.721 344 217 8 4 342 1 338 7.56e-62 202
Msa0458110 AT4G10950.2 33.123 317 207 4 26 340 69 382 2.85e-60 199
Msa0458110 AT5G18430.1 34.675 323 201 6 28 347 28 343 4.80e-60 197
Msa0458110 AT1G29660.1 34.795 342 215 6 1 339 5 341 4.95e-60 197
Msa0458110 AT5G15720.1 37.195 328 191 10 26 345 28 348 8.62e-60 197
Msa0458110 AT1G29670.1 35.447 347 208 9 2 339 1 340 1.65e-59 196
Msa0458110 AT5G08460.1 35.484 341 207 7 8 339 27 363 1.78e-59 196
Msa0458110 AT1G29670.2 36.991 319 190 8 25 339 97 408 8.53e-59 196
Msa0458110 AT1G75930.1 34.393 346 207 8 3 343 5 335 5.21e-58 191
Msa0458110 AT5G41890.1 32.456 342 220 5 14 344 17 358 6.98e-58 192
Msa0458110 AT4G10950.1 32.808 317 204 4 26 340 69 378 8.08e-58 192
Msa0458110 AT5G37690.2 32.267 344 214 9 4 342 1 330 9.07e-56 186
Msa0458110 AT1G71691.2 34.675 323 198 10 21 339 48 361 1.81e-55 186
Msa0458110 AT1G71250.1 34.154 325 203 7 20 339 33 351 6.38e-55 184
Msa0458110 AT1G53920.1 33.233 331 208 7 18 342 38 361 8.02e-55 184
Msa0458110 AT2G31550.1 38.710 217 131 2 135 350 2 217 1.59e-53 176
Msa0458110 AT4G18970.1 34.769 325 203 7 26 346 26 345 1.75e-53 180
Msa0458110 AT5G45670.1 32.267 344 223 8 1 339 1 339 2.65e-53 180
Msa0458110 AT4G18970.2 34.769 325 203 7 26 346 26 345 4.03e-53 181
Msa0458110 AT1G75920.4 34.915 295 179 3 52 344 25 308 9.21e-53 177
Msa0458110 AT1G33811.1 34.848 330 189 13 25 339 31 349 5.42e-51 174
Msa0458110 AT1G75920.3 31.395 344 191 5 3 344 5 305 2.54e-50 171
Msa0458110 AT5G55050.1 31.751 337 216 10 16 343 27 358 2.37e-49 170
Msa0458110 AT3G14225.1 32.110 327 199 9 28 339 37 355 5.20e-49 169
Msa0458110 AT3G14225.2 32.298 322 201 8 28 339 37 351 2.56e-48 167
Msa0458110 AT2G19010.1 33.236 343 194 12 8 339 10 328 4.44e-48 166
Msa0458110 AT5G40990.1 31.975 319 206 6 28 339 37 351 6.85e-48 166
Msa0458110 AT5G33370.2 35.361 263 166 4 28 288 30 290 7.09e-48 165
Msa0458110 AT2G19010.2 32.258 341 200 11 8 339 40 358 8.42e-48 166
Msa0458110 AT1G53940.2 32.817 323 198 8 28 339 39 353 2.70e-47 164
Msa0458110 AT1G71120.1 31.471 340 216 7 18 350 21 350 1.44e-44 157
Msa0458110 AT2G19060.1 31.778 343 210 12 3 338 4 329 4.72e-43 152
Msa0458110 AT2G03980.2 32.827 329 193 13 24 342 39 349 1.64e-42 151
Msa0458110 AT2G03980.3 32.827 329 193 13 24 342 39 349 1.64e-42 151
Msa0458110 AT2G03980.1 32.827 329 193 13 24 342 39 349 1.64e-42 151
Msa0458110 AT2G03980.4 32.827 329 193 13 24 342 39 349 1.64e-42 151
Msa0458110 AT5G15720.2 36.667 270 159 8 26 288 28 292 3.60e-42 149
Msa0458110 AT4G16230.1 32.530 249 160 5 2 245 3 248 1.09e-41 146
Msa0458110 AT1G71691.3 33.948 271 169 8 21 288 48 311 1.32e-40 145
Msa0458110 AT2G19050.1 31.366 322 194 10 25 339 28 329 4.57e-39 142
Msa0458110 AT1G53990.1 28.090 356 225 10 1 339 1 342 2.51e-38 140
Msa0458110 AT4G30140.1 33.025 324 186 13 25 340 30 330 1.37e-37 138
Msa0458110 AT2G04020.1 39.904 208 107 8 24 224 39 235 3.15e-37 135
Msa0458110 AT2G04020.2 39.904 208 107 8 24 224 39 235 1.47e-36 135
Msa0458110 AT5G15720.3 32.210 267 169 8 87 345 55 317 3.07e-36 134
Msa0458110 AT1G53940.1 33.333 267 164 7 28 288 39 297 1.52e-35 131
Msa0458110 AT1G71691.1 29.699 266 175 9 78 339 3 260 4.95e-34 127
Msa0458110 AT2G19050.2 32.210 267 162 7 25 289 28 277 1.49e-33 125
Msa0458110 AT3G14220.1 30.579 363 199 18 9 347 8 341 2.11e-32 124
Msa0458110 AT1G54020.2 28.035 346 217 13 6 342 8 330 3.06e-32 124
Msa0458110 AT1G54010.1 28.286 350 216 12 6 342 11 338 5.74e-32 124
Msa0458110 AT1G54030.1 28.797 316 199 9 29 342 53 344 8.66e-31 121
Msa0458110 AT2G27360.1 28.611 360 223 12 5 339 7 357 1.19e-30 120
Msa0458110 AT1G54000.1 26.590 346 227 11 6 342 11 338 3.90e-30 119
Msa0458110 AT1G56670.1 25.882 340 219 11 27 349 39 362 7.23e-30 118
Msa0458110 AT1G09390.1 25.779 353 230 12 4 339 12 349 8.88e-30 117
Msa0458110 AT3G14210.1 30.091 329 192 15 28 342 36 340 1.50e-29 117
Msa0458110 AT1G28610.2 28.763 372 223 15 1 344 1 358 3.39e-28 113
Msa0458110 AT1G28580.1 27.446 368 226 16 4 343 10 364 4.25e-28 113
Msa0458110 AT1G28600.1 29.459 370 221 15 1 343 1 357 7.01e-28 112
Msa0458110 AT1G54790.3 26.016 369 230 12 4 343 8 362 1.20e-27 112
Msa0458110 AT3G26430.1 28.378 370 213 16 4 338 6 358 1.45e-27 111
Msa0458110 AT1G28650.1 27.793 367 229 16 1 343 10 364 1.80e-27 111
Msa0458110 AT3G62280.1 28.190 337 209 10 23 343 31 350 1.89e-27 111
Msa0458110 AT1G28640.1 26.075 372 229 15 1 343 8 362 6.48e-27 110
Msa0458110 AT5G45910.1 30.263 380 213 18 4 350 6 366 8.08e-27 109
Msa0458110 AT1G31550.2 28.455 369 225 14 1 344 9 363 9.12e-27 109
Msa0458110 AT1G67830.1 27.405 343 204 13 27 338 29 357 1.89e-26 108
Msa0458110 AT1G28570.1 27.957 372 230 16 1 344 1 362 2.10e-26 108
Msa0458110 AT1G28590.1 29.032 372 211 16 7 344 12 364 4.32e-26 108
Msa0458110 AT3G48460.1 25.967 362 225 14 12 344 15 362 3.65e-25 105
Msa0458110 AT5G14450.1 26.870 361 225 10 7 340 20 368 7.86e-25 104
Msa0458110 AT1G28660.1 26.849 365 235 15 1 343 8 362 9.84e-25 103
Msa0458110 AT1G28670.1 28.255 361 222 16 1 336 8 356 1.20e-24 103
Msa0458110 AT3G27950.1 26.287 369 232 13 2 347 8 359 1.44e-24 103
Msa0458110 AT5G03610.1 28.354 328 202 13 29 344 44 350 2.83e-24 102
Msa0458110 AT1G54790.1 25.000 376 228 14 2 343 6 361 6.33e-24 101
Msa0458110 AT1G28660.2 26.849 365 234 15 1 343 8 361 6.45e-24 101
Msa0458110 AT1G54030.2 30.579 242 145 7 28 267 52 272 4.15e-23 98.2
Msa0458110 AT3G05180.1 25.706 354 212 12 23 343 31 366 5.30e-23 99.0
Msa0458110 AT1G31550.1 27.717 368 226 15 1 344 9 360 6.70e-23 99.0
Msa0458110 AT3G09930.2 28.779 344 186 15 29 347 40 349 1.71e-21 94.4
Msa0458110 AT3G09930.1 28.779 344 186 15 29 347 40 349 1.71e-21 94.4
Msa0458110 AT4G01130.1 24.234 359 210 13 28 347 34 369 1.47e-20 92.0
Msa0458110 AT1G54790.2 23.383 402 228 15 2 343 6 387 5.42e-19 87.8
Msa0458110 AT1G56670.2 26.182 275 174 10 27 288 39 297 5.01e-18 83.6
Msa0458110 AT3G14210.2 27.619 210 137 7 140 342 11 212 6.49e-17 80.1
Msa0458110 AT1G54020.1 24.906 265 173 9 83 342 1 244 1.34e-16 79.3
Msa0458110 AT1G54020.5 24.906 265 173 9 83 342 1 244 1.34e-16 79.3
Msa0458110 AT1G54020.3 24.906 265 173 9 83 342 1 244 1.34e-16 79.3
Msa0458110 AT4G16233.1 34.513 113 72 2 232 343 1 112 1.87e-16 75.5
Msa0458110 AT4G16220.1 43.636 110 53 3 6 114 13 114 3.80e-16 77.4
Msa0458110 AT1G54020.4 26.425 193 130 6 155 342 10 195 2.07e-15 75.1
Msa0458110 AT5G03600.2 27.794 349 199 16 4 332 21 336 3.53e-15 76.3
Msa0458110 AT5G03600.1 27.103 321 191 15 25 332 11 301 7.87e-15 74.7
Msa0458110 AT4G01130.3 22.261 283 173 8 100 347 13 283 4.29e-14 72.4
Msa0458110 AT1G28580.2 24.211 285 188 12 78 343 8 283 9.46e-14 71.6
Msa0458110 AT2G36325.1 25.305 328 216 12 25 343 44 351 1.28e-13 71.6
Msa0458110 AT1G28570.2 26.214 206 136 7 151 344 89 290 7.34e-13 68.9
Msa0458110 AT4G01130.2 24.306 288 168 11 28 288 34 298 3.04e-12 67.4

Find 83 sgRNAs with CRISPR-Local

Find 314 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGCAAATAAATATGTATTT+TGG 0.080453 3_3:+53441895 Msa0458110:CDS
GCCAATTGTTCCTGCTTATT+TGG 0.108815 3_3:+53437297 Msa0458110:CDS
TTTGCATCTTTGCATGAAAA+TGG 0.147917 3_3:-53441879 None:intergenic
TGAAAGGGCCATAAATATTA+TGG 0.173430 3_3:+53438901 Msa0458110:CDS
GATACTAGGACTCTTATTTA+TGG 0.179657 3_3:-53436936 None:intergenic
TCCAGGATGTGATACCTTTA+TGG 0.179807 3_3:+53438591 Msa0458110:intron
AATAAGGGAGTCTTTATATT+TGG 0.192260 3_3:+53438688 Msa0458110:CDS
AGAAGGCTAAAGAAATAATA+AGG 0.205621 3_3:+53438672 Msa0458110:CDS
ATGTAGACCCATAATATTTA+TGG 0.208788 3_3:-53438909 None:intergenic
TTTGGAGTTCAATGCAAAAT+TGG 0.216159 3_3:+53438961 Msa0458110:CDS
GTTGCACAACCTTCTCAATT+TGG 0.222834 3_3:+53439067 Msa0458110:CDS
CCACCTATTTCATAAGTTCT+TGG 0.245820 3_3:-53442166 None:intergenic
GGAGACTCTTCTGTTGATTC+AGG 0.247186 3_3:+53437136 Msa0458110:CDS
TTTAAATTTAGCTTGTATTA+GGG 0.285746 3_3:+53442137 Msa0458110:three_prime_UTR
AAGAAATTGAAAGCATCTTT+TGG 0.301912 3_3:+53438644 Msa0458110:CDS
TACTACAATAAAACCAATCT+TGG 0.305494 3_3:-53436846 None:intergenic
GATTTCATCTCTGAGGCATT+TGG 0.321294 3_3:+53437268 Msa0458110:CDS
GAGCCAAGAACTTATGAAAT+AGG 0.326429 3_3:+53442163 Msa0458110:three_prime_UTR
ATACTAGGACTCTTATTTAT+GGG 0.331335 3_3:-53436935 None:intergenic
CTTAGTATCAAAGTTGAATA+AGG 0.332106 3_3:+53438988 Msa0458110:CDS
AAGATGCTTTCAATTTCTTT+TGG 0.344742 3_3:-53438640 None:intergenic
TCCAAATAAGCAGGAACAAT+TGG 0.379299 3_3:-53437298 None:intergenic
AATAGAGCAAACACTCGTTT+TGG 0.379434 3_3:-53436816 None:intergenic
AATTCAACTTCTTTCCATAA+AGG 0.381519 3_3:-53438605 None:intergenic
AGCTGACTTGTTCTTTCTGA+GGG 0.383441 3_3:-53441930 None:intergenic
CTAGGTCATAAATTTCTCTA+AGG 0.395264 3_3:-53438826 None:intergenic
TTTGGAAAATCTTTACCATA+TGG 0.399077 3_3:-53437202 None:intergenic
TGGGGTGTCTGCCACTTGAA+AGG 0.401836 3_3:+53438885 Msa0458110:CDS
GAAAGGGCCATAAATATTAT+GGG 0.413250 3_3:+53438902 Msa0458110:CDS
TCAATATATATATGAGCAAC+AGG 0.415971 3_3:+53442000 Msa0458110:three_prime_UTR
TCTATTTAACCACCCAAGAT+TGG 0.433027 3_3:+53436833 Msa0458110:five_prime_UTR
GGACCTCCATGGATTTCAAT+TGG 0.436345 3_3:+53439009 Msa0458110:CDS
TTGCATCTTTGCATGAAAAT+GGG 0.440332 3_3:-53441878 None:intergenic
TCTGACAGGGTTACCTCCCA+TGG 0.441937 3_3:+53438865 Msa0458110:CDS
GTATTACAATGATGTTGCTT+TGG 0.448572 3_3:+53438943 Msa0458110:CDS
TTTCCAAATGGTGATGCTAC+TGG 0.460194 3_3:+53437217 Msa0458110:CDS
CTACCAGTAGCATCACCATT+TGG 0.461312 3_3:-53437220 None:intergenic
TTGGAGTTCAATGCAAAATT+GGG 0.463408 3_3:+53438962 Msa0458110:CDS
CTTAGAGAAATTTATGACCT+AGG 0.466601 3_3:+53438827 Msa0458110:CDS
GCAAGGAAAATTTCTCTGAC+AGG 0.469442 3_3:+53438851 Msa0458110:CDS
TAAAACTGTTCAAGAATATG+AGG 0.472091 3_3:+53438775 Msa0458110:CDS
TAGCTGACTTGTTCTTTCTG+AGG 0.479119 3_3:-53441931 None:intergenic
GAAGGCTAAAGAAATAATAA+GGG 0.479372 3_3:+53438673 Msa0458110:CDS
GGGGTGTCTGCCACTTGAAA+GGG 0.479500 3_3:+53438886 Msa0458110:CDS
CTGACAGGGTTACCTCCCAT+GGG 0.492340 3_3:+53438866 Msa0458110:CDS
CATCTACCAATTGAAATCCA+TGG 0.493897 3_3:-53439015 None:intergenic
ACTACAATAAAACCAATCTT+GGG 0.494299 3_3:-53436845 None:intergenic
AGAGTGGGGTGCTGTGGAAC+AGG 0.495356 3_3:+53441819 Msa0458110:CDS
TGGAACAGGTAGATTTGAGA+TGG 0.509467 3_3:+53441833 Msa0458110:CDS
ATTTCATTCCAACATTAGCT+AGG 0.513477 3_3:+53437167 Msa0458110:CDS
TTATATATATGCAAACAAAC+AGG 0.527875 3_3:+53436900 Msa0458110:five_prime_UTR
GGAAAATCTTTACCATATGG+TGG 0.532684 3_3:-53437199 None:intergenic
TAAGTAGGATCCAAATAAGC+AGG 0.535765 3_3:-53437307 None:intergenic
TTCAAGTGGCAGACACCCCA+TGG 0.536664 3_3:-53438882 None:intergenic
ATAATCAATTTAGTGAGGCC+AGG 0.543230 3_3:+53437011 Msa0458110:five_prime_UTR
AAATTGCTCCTAGCTAATGT+TGG 0.544150 3_3:-53437175 None:intergenic
AAATCTGATATATCGTAAGT+AGG 0.544264 3_3:-53437322 None:intergenic
TATTGTAGTAATTAGAATGG+TGG 0.544807 3_3:+53436859 Msa0458110:five_prime_UTR
TGTATGAGTACTATGATACT+AGG 0.558572 3_3:-53436950 None:intergenic
ATTACACACAGCTTGAAAGA+AGG 0.561595 3_3:+53438744 Msa0458110:CDS
GCTACTGGTAGATTCTCAAA+TGG 0.564673 3_3:+53437232 Msa0458110:CDS
CAAGGAAAATTTCTCTGACA+GGG 0.564857 3_3:+53438852 Msa0458110:CDS
TCTTTATATTTGGTTAGCAT+AGG 0.567797 3_3:+53438698 Msa0458110:CDS
CACACAGCTTGAAAGAAGGA+TGG 0.578080 3_3:+53438748 Msa0458110:CDS
GGAACAGGTAGATTTGAGAT+GGG 0.586423 3_3:+53441834 Msa0458110:CDS
ACAAACTTACCAAATTGAGA+AGG 0.602477 3_3:-53439076 None:intergenic
GATGCAAGAGTGGGGTGCTG+TGG 0.605502 3_3:+53441813 Msa0458110:CDS
ACAATAAAACCAATCTTGGG+TGG 0.614930 3_3:-53436842 None:intergenic
TGCCACTGATTTCATCTCTG+AGG 0.615807 3_3:+53437261 Msa0458110:CDS
CTTGTATAATCAATTTAGTG+AGG 0.621830 3_3:+53437006 Msa0458110:five_prime_UTR
CATGTTTCAATATCAAACAG+TGG 0.622985 3_3:+53437088 Msa0458110:CDS
ATATTTATGGCCCTTTCAAG+TGG 0.628697 3_3:-53438896 None:intergenic
GAAAGAAGTTGAATTCTACA+AGG 0.633030 3_3:+53438613 Msa0458110:CDS
TATGGGTCTACATAGTTGTG+TGG 0.633469 3_3:+53438919 Msa0458110:CDS
GCTGACTTGTTCTTTCTGAG+GGG 0.633891 3_3:-53441929 None:intergenic
AAATTTATGACCTAGGAGCA+AGG 0.635448 3_3:+53438834 Msa0458110:CDS
CCAAGAACTTATGAAATAGG+TGG 0.645382 3_3:+53442166 Msa0458110:three_prime_UTR
TCAAGTGGCAGACACCCCAT+GGG 0.655358 3_3:-53438881 None:intergenic
AGTGGCAGACACCCCATGGG+AGG 0.664064 3_3:-53438878 None:intergenic
AAGTTGAATAAGGACCTCCA+TGG 0.665684 3_3:+53438998 Msa0458110:CDS
TGCCTCAGAGATGAAATCAG+TGG 0.672431 3_3:-53437263 None:intergenic
TGACAGGGTTACCTCCCATG+GGG 0.694214 3_3:+53438867 Msa0458110:CDS
CTACCAATTGAAATCCATGG+AGG 0.762628 3_3:-53439012 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATGACAAAAAATATTTAA+AGG + chr3_3:53438109-53438128 Msa0458110:intron 10.0%
!! ATATTTATAGCAATAAAAAA+AGG + chr3_3:53438178-53438197 Msa0458110:intron 10.0%
!!! ACTAATATCATTTTTTTTTT+AGG - chr3_3:53438540-53438559 None:intergenic 10.0%
!!! ATCATACATTTAAAATATTA+AGG - chr3_3:53439122-53439141 None:intergenic 10.0%
!!! TTAATATTTTAAATGTATGA+TGG + chr3_3:53439121-53439140 Msa0458110:intron 10.0%
!!! TAATATTTTAAATGTATGAT+GGG + chr3_3:53439122-53439141 Msa0458110:intron 10.0%
!!! TTTTTATGTTGAAAAATAAA+AGG + chr3_3:53439339-53439358 Msa0458110:intron 10.0%
!!! AAAATTATTAATTTGACAAT+AGG + chr3_3:53440196-53440215 Msa0458110:intron 10.0%
!!! GTTAAAAAAAAAAATCATTT+TGG + chr3_3:53441145-53441164 Msa0458110:intron 10.0%
!!! TTTTATTGTAGTAATTAGAA+TGG + chr3_3:53436856-53436875 Msa0458110:five_prime_UTR 15.0%
!!! TTAGTTACATTTTTTTTTCT+TGG + chr3_3:53437417-53437436 Msa0458110:intron 15.0%
!! ATTGTAAAGATTATATCATT+TGG + chr3_3:53437488-53437507 Msa0458110:intron 15.0%
!! TAAATTGACAAAATTGAAAA+AGG + chr3_3:53437515-53437534 Msa0458110:intron 15.0%
!!! AGAATGAAATTTTATGTTTT+TGG + chr3_3:53437930-53437949 Msa0458110:intron 15.0%
!!! AATATCATTTTTTTTTTAGG+AGG - chr3_3:53438537-53438556 None:intergenic 15.0%
!! AATAAAAATTGAACTCAAAT+AGG - chr3_3:53438564-53438583 None:intergenic 15.0%
!!! TTTTTTACAAATAAAACCAA+AGG + chr3_3:53439693-53439712 Msa0458110:intron 15.0%
!! TATACTCTCAAAAAAAATTA+GGG + chr3_3:53439771-53439790 Msa0458110:intron 15.0%
!! GCTATAATAATATGAAATTA+TGG - chr3_3:53440134-53440153 None:intergenic 15.0%
!!! AATTTTGTTTCACTTATAAT+TGG - chr3_3:53440257-53440276 None:intergenic 15.0%
!! AAACAAAATTTCTATACAAT+AGG + chr3_3:53440267-53440286 Msa0458110:intron 15.0%
!! GAAAATAAAATAGACAAAAA+CGG + chr3_3:53440407-53440426 Msa0458110:intron 15.0%
!! ATTTACTCCTAATATTTAAA+TGG + chr3_3:53440980-53440999 Msa0458110:intron 15.0%
!!! AAATCATTTTGGATTAATTA+TGG + chr3_3:53441156-53441175 Msa0458110:intron 15.0%
!!! AATCATTTTGGATTAATTAT+GGG + chr3_3:53441157-53441176 Msa0458110:intron 15.0%
!! TCCTTAATATTATTAAGTAA+TGG + chr3_3:53441348-53441367 Msa0458110:intron 15.0%
!! CCTTAATATTATTAAGTAAT+GGG + chr3_3:53441349-53441368 Msa0458110:intron 15.0%
!! GAAATTACTATTAAAGATAA+TGG + chr3_3:53441473-53441492 Msa0458110:intron 15.0%
!!! ATGCAAATAAATATGTATTT+TGG + chr3_3:53441895-53441914 Msa0458110:CDS 15.0%
!!! TGCAAATAAATATGTATTTT+GGG + chr3_3:53441896-53441915 Msa0458110:CDS 15.0%
!! TATTTGATAGAAAAACATAT+TGG + chr3_3:53441963-53441982 Msa0458110:CDS 15.0%
!! ATTTGATAGAAAAACATATT+GGG + chr3_3:53441964-53441983 Msa0458110:CDS 15.0%
!!! TTTTAAATTTAGCTTGTATT+AGG + chr3_3:53442136-53442155 Msa0458110:three_prime_UTR 15.0%
!!! TTTAAATTTAGCTTGTATTA+GGG + chr3_3:53442137-53442156 Msa0458110:three_prime_UTR 15.0%
!!! ATGTTTACTATTACATTTTT+TGG - chr3_3:53442192-53442211 None:intergenic 15.0%
!! TTATATATATGCAAACAAAC+AGG + chr3_3:53436900-53436919 Msa0458110:five_prime_UTR 20.0%
!!! TGATGAAAATGTACATTTTA+TGG + chr3_3:53437041-53437060 Msa0458110:CDS 20.0%
!!! TTTTCTTTTCTTTTCTTGAA+AGG - chr3_3:53437659-53437678 None:intergenic 20.0%
!! TTTCAAGAAAAGAAAAGAAA+AGG + chr3_3:53437658-53437677 Msa0458110:intron 20.0%
!! TCAAATAATTGAATGTAAGT+TGG - chr3_3:53437725-53437744 None:intergenic 20.0%
!! ACTTACATTCAATTATTTGA+AGG + chr3_3:53437725-53437744 Msa0458110:intron 20.0%
!!! AGCTAAAGTATTAAAATGAT+GGG - chr3_3:53437777-53437796 None:intergenic 20.0%
!!! TAGCTAAAGTATTAAAATGA+TGG - chr3_3:53437778-53437797 None:intergenic 20.0%
!!! TAGTTTTGTAGATTAAAAGT+AGG + chr3_3:53437834-53437853 Msa0458110:intron 20.0%
!!! AGTAGATATTTTTTTAGACA+TGG + chr3_3:53437861-53437880 Msa0458110:intron 20.0%
!! AATTCTTTCAAAAATCTGAA+TGG + chr3_3:53438047-53438066 Msa0458110:intron 20.0%
!! ATTATATTTGTTCATGGTTA+AGG + chr3_3:53438418-53438437 Msa0458110:intron 20.0%
!!! AATTTTTATTGTGTTTTTCC+AGG + chr3_3:53438574-53438593 Msa0458110:intron 20.0%
!! TAACATTTAAGTGACTATAA+GGG + chr3_3:53439217-53439236 Msa0458110:intron 20.0%
!! AATTGTTTCATGATTTATTG+AGG + chr3_3:53439396-53439415 Msa0458110:intron 20.0%
!! ATTGTTTCATGATTTATTGA+GGG + chr3_3:53439397-53439416 Msa0458110:intron 20.0%
!!! ATATACTGAATTTTTTCCTT+TGG - chr3_3:53439712-53439731 None:intergenic 20.0%
!!! CTAATTTTTTTTGAGAGTAT+AGG - chr3_3:53439772-53439791 None:intergenic 20.0%
!! CTATACTCTCAAAAAAAATT+AGG + chr3_3:53439770-53439789 Msa0458110:intron 20.0%
!!! TGTTAATTTTAAAACTAGAG+GGG - chr3_3:53439844-53439863 None:intergenic 20.0%
!!! GTGTTAATTTTAAAACTAGA+GGG - chr3_3:53439845-53439864 None:intergenic 20.0%
!! TATTATTATAGCATGAAATG+TGG + chr3_3:53440142-53440161 Msa0458110:intron 20.0%
!!! ATTTTTAAAGAACTATACCA+GGG - chr3_3:53440181-53440200 None:intergenic 20.0%
!!! AATTTTTAAAGAACTATACC+AGG - chr3_3:53440182-53440201 None:intergenic 20.0%
!! CATCTAATTACAAATTGAAT+TGG + chr3_3:53440304-53440323 Msa0458110:intron 20.0%
!! TTTAACAACACTTTAAACAT+TGG - chr3_3:53440565-53440584 None:intergenic 20.0%
!! AATGAGATGAATTATTAGTA+AGG - chr3_3:53441108-53441127 None:intergenic 20.0%
!! TCATTTCATATTTATCTACT+TGG + chr3_3:53441123-53441142 Msa0458110:intron 20.0%
!! CCCATTACTTAATAATATTA+AGG - chr3_3:53441352-53441371 None:intergenic 20.0%
!! TTCTATCATTAAAATCTATC+AGG + chr3_3:53441783-53441802 Msa0458110:intron 20.0%
!!! AAGTGTTTTATAGAATTGAA+AGG - chr3_3:53442027-53442046 None:intergenic 20.0%
! ACTACAATAAAACCAATCTT+GGG - chr3_3:53436848-53436867 None:intergenic 25.0%
! TACTACAATAAAACCAATCT+TGG - chr3_3:53436849-53436868 None:intergenic 25.0%
! TATTGTAGTAATTAGAATGG+TGG + chr3_3:53436859-53436878 Msa0458110:five_prime_UTR 25.0%
!! ATACTAGGACTCTTATTTAT+GGG - chr3_3:53436938-53436957 None:intergenic 25.0%
! CTTGTATAATCAATTTAGTG+AGG + chr3_3:53437006-53437025 Msa0458110:five_prime_UTR 25.0%
! TTTGGAAAATCTTTACCATA+TGG - chr3_3:53437205-53437224 None:intergenic 25.0%
!! TATGGTAAAGATTTTCCAAA+TGG + chr3_3:53437205-53437224 Msa0458110:CDS 25.0%
! AAATCTGATATATCGTAAGT+AGG - chr3_3:53437325-53437344 None:intergenic 25.0%
!! AGTATTAAAATGATGGGAAA+TGG - chr3_3:53437771-53437790 None:intergenic 25.0%
! TGACTTAAAAGTTAAAAGCA+TGG + chr3_3:53438081-53438100 Msa0458110:intron 25.0%
! CTGTTCATTATATTTGTTCA+TGG + chr3_3:53438412-53438431 Msa0458110:intron 25.0%
! TGATTGAGTCTAATTTCATA+TGG - chr3_3:53438465-53438484 None:intergenic 25.0%
! AATTCAACTTCTTTCCATAA+AGG - chr3_3:53438608-53438627 None:intergenic 25.0%
!! AAGATGCTTTCAATTTCTTT+TGG - chr3_3:53438643-53438662 None:intergenic 25.0%
!!! AAGAAATTGAAAGCATCTTT+TGG + chr3_3:53438644-53438663 Msa0458110:CDS 25.0%
! AGAAGGCTAAAGAAATAATA+AGG + chr3_3:53438672-53438691 Msa0458110:CDS 25.0%
! GAAGGCTAAAGAAATAATAA+GGG + chr3_3:53438673-53438692 Msa0458110:CDS 25.0%
! AATAAGGGAGTCTTTATATT+TGG + chr3_3:53438688-53438707 Msa0458110:CDS 25.0%
! TCTTTATATTTGGTTAGCAT+AGG + chr3_3:53438698-53438717 Msa0458110:CDS 25.0%
! TAAAACTGTTCAAGAATATG+AGG + chr3_3:53438775-53438794 Msa0458110:CDS 25.0%
! ATGTAGACCCATAATATTTA+TGG - chr3_3:53438912-53438931 None:intergenic 25.0%
! CTTAGTATCAAAGTTGAATA+AGG + chr3_3:53438988-53439007 Msa0458110:CDS 25.0%
! GTAACATTTAAGTGACTATA+AGG + chr3_3:53439216-53439235 Msa0458110:intron 25.0%
! TGAAAAATAAGAGATTCTAC+TGG - chr3_3:53439535-53439554 None:intergenic 25.0%
! TATTATAAGAAATAGGAGAC+TGG - chr3_3:53439628-53439647 None:intergenic 25.0%
! GAGTCACTATTATAAGAAAT+AGG - chr3_3:53439635-53439654 None:intergenic 25.0%
!!! GTTAATTTTAAAACTAGAGG+GGG - chr3_3:53439843-53439862 None:intergenic 25.0%
!!! GGTGTTAATTTTAAAACTAG+AGG - chr3_3:53439846-53439865 None:intergenic 25.0%
!!! TCTATTTTAATTGACCTTCA+GGG - chr3_3:53439875-53439894 None:intergenic 25.0%
!!! ATCTATTTTAATTGACCTTC+AGG - chr3_3:53439876-53439895 None:intergenic 25.0%
!!! AAACAGTGTTAAGTTGATAA+GGG - chr3_3:53439907-53439926 None:intergenic 25.0%
!!! TAAACAGTGTTAAGTTGATA+AGG - chr3_3:53439908-53439927 None:intergenic 25.0%
!! AGCATTTTCAAAATTTGAGA+GGG - chr3_3:53440043-53440062 None:intergenic 25.0%
!! AAGCATTTTCAAAATTTGAG+AGG - chr3_3:53440044-53440063 None:intergenic 25.0%
! AATAAAATAGACAAAAACGG+CGG + chr3_3:53440410-53440429 Msa0458110:intron 25.0%
!! GATTTCTATTTTGTCTTTGA+CGG + chr3_3:53440760-53440779 Msa0458110:intron 25.0%
! TGTGTCATGTTATAAAATAG+AGG + chr3_3:53440814-53440833 Msa0458110:intron 25.0%
! GTGTCATGTTATAAAATAGA+GGG + chr3_3:53440815-53440834 Msa0458110:intron 25.0%
! TGTCATGTTATAAAATAGAG+GGG + chr3_3:53440816-53440835 Msa0458110:intron 25.0%
! TTACATATTGATAGAGTTGA+GGG + chr3_3:53440846-53440865 Msa0458110:intron 25.0%
!!! TAGTGTGCTGTTAATTTTTT+GGG - chr3_3:53440889-53440908 None:intergenic 25.0%
!!! ATAGTGTGCTGTTAATTTTT+TGG - chr3_3:53440890-53440909 None:intergenic 25.0%
! TAGTTAGGTTTGCAATTAAT+AGG - chr3_3:53441216-53441235 None:intergenic 25.0%
!! ATGGTTTAGAATTGATAGTT+AGG - chr3_3:53441231-53441250 None:intergenic 25.0%
! TTAAGGAAACATTGAATTAG+TGG - chr3_3:53441335-53441354 None:intergenic 25.0%
! ATTTGTCTGTACTAGTATTA+TGG + chr3_3:53441372-53441391 Msa0458110:intron 25.0%
!! AATGGAATCTAAAACATTGA+TGG + chr3_3:53441491-53441510 Msa0458110:intron 25.0%
!! ATGGAATCTAAAACATTGAT+GGG + chr3_3:53441492-53441511 Msa0458110:intron 25.0%
! GAGTTAATAACCAACAATAT+GGG - chr3_3:53441651-53441670 None:intergenic 25.0%
! TGAGTTAATAACCAACAATA+TGG - chr3_3:53441652-53441671 None:intergenic 25.0%
!!! GCATTCTTTTTTGACTAAAT+TGG + chr3_3:53441752-53441771 Msa0458110:intron 25.0%
! TCAATATATATATGAGCAAC+AGG + chr3_3:53442000-53442019 Msa0458110:three_prime_UTR 25.0%
! GATACTAGGACTCTTATTTA+TGG - chr3_3:53436939-53436958 None:intergenic 30.0%
TGTATGAGTACTATGATACT+AGG - chr3_3:53436953-53436972 None:intergenic 30.0%
CCAGAGAATGATAAAAAGAT+TGG - chr3_3:53436981-53437000 None:intergenic 30.0%
! CCAATCTTTTTATCATTCTC+TGG + chr3_3:53436978-53436997 Msa0458110:five_prime_UTR 30.0%
!! CATTTTCATCATTTTTCACC+TGG - chr3_3:53437032-53437051 None:intergenic 30.0%
CATGTTTCAATATCAAACAG+TGG + chr3_3:53437088-53437107 Msa0458110:CDS 30.0%
! GTTCCAGCTATAATTGTTTT+TGG + chr3_3:53437115-53437134 Msa0458110:CDS 30.0%
TCTCCAAAAACAATTATAGC+TGG - chr3_3:53437121-53437140 None:intergenic 30.0%
ATTTCATTCCAACATTAGCT+AGG + chr3_3:53437167-53437186 Msa0458110:CDS 30.0%
! GATATATCAGATTTTGCTAC+TGG + chr3_3:53437331-53437350 Msa0458110:CDS 30.0%
GAAAAGAAAAGGAACTCAAT+CGG + chr3_3:53437669-53437688 Msa0458110:intron 30.0%
AGTCTCCATTTATTATCAGT+GGG - chr3_3:53438312-53438331 None:intergenic 30.0%
!!! CTCGGGACAATTTTTTTTTT+CGG + chr3_3:53438375-53438394 Msa0458110:intron 30.0%
!!! TCGGGACAATTTTTTTTTTC+GGG + chr3_3:53438376-53438395 Msa0458110:intron 30.0%
!! TAGGAGGTACTAATATCATT+TGG - chr3_3:53438521-53438540 None:intergenic 30.0%
GAAAGAAGTTGAATTCTACA+AGG + chr3_3:53438613-53438632 Msa0458110:CDS 30.0%
CTAGGTCATAAATTTCTCTA+AGG - chr3_3:53438829-53438848 None:intergenic 30.0%
CTTAGAGAAATTTATGACCT+AGG + chr3_3:53438827-53438846 Msa0458110:CDS 30.0%
TGAAAGGGCCATAAATATTA+TGG + chr3_3:53438901-53438920 Msa0458110:CDS 30.0%
GAAAGGGCCATAAATATTAT+GGG + chr3_3:53438902-53438921 Msa0458110:CDS 30.0%
! GTATTACAATGATGTTGCTT+TGG + chr3_3:53438943-53438962 Msa0458110:CDS 30.0%
! TTTGGAGTTCAATGCAAAAT+TGG + chr3_3:53438961-53438980 Msa0458110:CDS 30.0%
TTGGAGTTCAATGCAAAATT+GGG + chr3_3:53438962-53438981 Msa0458110:CDS 30.0%
ACAAACTTACCAAATTGAGA+AGG - chr3_3:53439079-53439098 None:intergenic 30.0%
TAGACAAAACAAGTAACAAG+GGG - chr3_3:53439449-53439468 None:intergenic 30.0%
CTAGACAAAACAAGTAACAA+GGG - chr3_3:53439450-53439469 None:intergenic 30.0%
ACTAGACAAAACAAGTAACA+AGG - chr3_3:53439451-53439470 None:intergenic 30.0%
ATAATCATTGTCTAGTCTCA+TGG + chr3_3:53439474-53439493 Msa0458110:intron 30.0%
!!! CGTTTTAAAGTGATATGAGA+TGG - chr3_3:53439589-53439608 None:intergenic 30.0%
! TGTCATTTAAAGAGACTTCA+GGG - chr3_3:53439814-53439833 None:intergenic 30.0%
! ATGTCATTTAAAGAGACTTC+AGG - chr3_3:53439815-53439834 None:intergenic 30.0%
!!! CTATTTTAATTGACCTTCAG+GGG - chr3_3:53439874-53439893 None:intergenic 30.0%
!! TTTCCACACAAACACTTTTT+CGG + chr3_3:53439999-53440018 Msa0458110:intron 30.0%
! TTATGGTCAAGTTGTTATAC+CGG - chr3_3:53440117-53440136 None:intergenic 30.0%
CAAGAATTGCTACAACTAAT+AGG + chr3_3:53440220-53440239 Msa0458110:intron 30.0%
! ATGCATATACAGGTATGTTT+TGG - chr3_3:53440357-53440376 None:intergenic 30.0%
CTTTCATTCTATGCATATAC+AGG - chr3_3:53440367-53440386 None:intergenic 30.0%
CATAGAATGAAAGAGAACTA+CGG + chr3_3:53440374-53440393 Msa0458110:intron 30.0%
!! TTTCATTCTAATCGCTTTTC+TGG - chr3_3:53440522-53440541 None:intergenic 30.0%
GTTGTTAAATGCTTCTTCTA+TGG + chr3_3:53440576-53440595 Msa0458110:intron 30.0%
CGAAAAAGAAAGAGAATGAA+TGG + chr3_3:53440721-53440740 Msa0458110:intron 30.0%
AAAAGAAAGAGAATGAATGG+AGG + chr3_3:53440724-53440743 Msa0458110:intron 30.0%
AAAGAAAGAGAATGAATGGA+GGG + chr3_3:53440725-53440744 Msa0458110:intron 30.0%
GTTACATATTGATAGAGTTG+AGG + chr3_3:53440845-53440864 Msa0458110:intron 30.0%
TACATATTGATAGAGTTGAG+GGG + chr3_3:53440847-53440866 Msa0458110:intron 30.0%
GTTGTGGCCATTTAAATATT+AGG - chr3_3:53440990-53441009 None:intergenic 30.0%
!!! CTTTTTTTTGGTACATGTTG+TGG - chr3_3:53441006-53441025 None:intergenic 30.0%
CAACATGTACCAAAAAAAAG+AGG + chr3_3:53441006-53441025 Msa0458110:intron 30.0%
!!! AATTGTGGACCTCTTTTTTT+TGG - chr3_3:53441018-53441037 None:intergenic 30.0%
CTCTGTCAAAAAAGAAATTG+TGG - chr3_3:53441033-53441052 None:intergenic 30.0%
!!! CACAATTTCTTTTTTGACAG+AGG + chr3_3:53441031-53441050 Msa0458110:intron 30.0%
!!! AATTTCTTTTTTGACAGAGG+AGG + chr3_3:53441034-53441053 Msa0458110:intron 30.0%
! ATGACTTAAAGTGGACTTAA+TGG - chr3_3:53441250-53441269 None:intergenic 30.0%
GTTAGTTGTATGACTTAAAG+TGG - chr3_3:53441259-53441278 None:intergenic 30.0%
!! ATTGATGGGAGCATATTTTA+AGG + chr3_3:53441506-53441525 Msa0458110:intron 30.0%
!! TGAACCTATTTAAGTTGATG+TGG - chr3_3:53441547-53441566 None:intergenic 30.0%
TTAAATGTCTCCCATATTGT+TGG + chr3_3:53441638-53441657 Msa0458110:intron 30.0%
TTGCATCTTTGCATGAAAAT+GGG - chr3_3:53441881-53441900 None:intergenic 30.0%
TTTGCATCTTTGCATGAAAA+TGG - chr3_3:53441882-53441901 None:intergenic 30.0%
CAAAAATATTTATGCATGCG+TGG - chr3_3:53442070-53442089 None:intergenic 30.0%
! AATAGAGCAAACACTCGTTT+TGG - chr3_3:53436819-53436838 None:intergenic 35.0%
TCTATTTAACCACCCAAGAT+TGG + chr3_3:53436833-53436852 Msa0458110:five_prime_UTR 35.0%
ACAATAAAACCAATCTTGGG+TGG - chr3_3:53436845-53436864 None:intergenic 35.0%
ATAATCAATTTAGTGAGGCC+AGG + chr3_3:53437011-53437030 Msa0458110:five_prime_UTR 35.0%
AAATTGCTCCTAGCTAATGT+TGG - chr3_3:53437178-53437197 None:intergenic 35.0%
GGAAAATCTTTACCATATGG+TGG - chr3_3:53437202-53437221 None:intergenic 35.0%
TCCAAATAAGCAGGAACAAT+TGG - chr3_3:53437301-53437320 None:intergenic 35.0%
TAAGTAGGATCCAAATAAGC+AGG - chr3_3:53437310-53437329 None:intergenic 35.0%
CAGTCTCCATTTATTATCAG+TGG - chr3_3:53438313-53438332 None:intergenic 35.0%
! AAATTTTCCTCGTGAAAGCT+CGG + chr3_3:53438357-53438376 Msa0458110:intron 35.0%
ATTACACACAGCTTGAAAGA+AGG + chr3_3:53438744-53438763 Msa0458110:CDS 35.0%
AAATTTATGACCTAGGAGCA+AGG + chr3_3:53438834-53438853 Msa0458110:CDS 35.0%
CAAGGAAAATTTCTCTGACA+GGG + chr3_3:53438852-53438871 Msa0458110:CDS 35.0%
ATATTTATGGCCCTTTCAAG+TGG - chr3_3:53438899-53438918 None:intergenic 35.0%
CATCTACCAATTGAAATCCA+TGG - chr3_3:53439018-53439037 None:intergenic 35.0%
TGACATTACAAGACAAGACA+AGG + chr3_3:53439284-53439303 Msa0458110:intron 35.0%
GTCATTTAAAGAGACTTCAG+GGG - chr3_3:53439813-53439832 None:intergenic 35.0%
!! AGTGTTAAGTTGATAAGGGA+GGG - chr3_3:53439903-53439922 None:intergenic 35.0%
TAGAAGAGAGAGGACTTTAA+CGG - chr3_3:53439935-53439954 None:intergenic 35.0%
GAATGAATACTAGAAGAGAG+AGG - chr3_3:53439945-53439964 None:intergenic 35.0%
TAGTATTCATTCTTCCTGCT+TGG + chr3_3:53439953-53439972 Msa0458110:intron 35.0%
!! AATCCGAAAAAGTGTTTGTG+TGG - chr3_3:53440005-53440024 None:intergenic 35.0%
GCTGGGTATATTTCATCTTA+GGG - chr3_3:53440617-53440636 None:intergenic 35.0%
!!! AGGTTCAGGTGTTATTTTCT+TGG + chr3_3:53440649-53440668 Msa0458110:intron 35.0%
!!! TTCAGGTGTTATTTTCTTGG+AGG + chr3_3:53440652-53440671 Msa0458110:intron 35.0%
!!! TCAGGTGTTATTTTCTTGGA+GGG + chr3_3:53440653-53440672 Msa0458110:intron 35.0%
TGTCTTTGACGGAAATGTAA+CGG + chr3_3:53440771-53440790 Msa0458110:intron 35.0%
!! GAATTGTGTTTGTTGTGCTA+TGG - chr3_3:53441076-53441095 None:intergenic 35.0%
TGCAATTAATAGGTCAGTAG+TGG - chr3_3:53441206-53441225 None:intergenic 35.0%
AGTGGTACACAAGTGAATTT+GGG - chr3_3:53441317-53441336 None:intergenic 35.0%
TAGTGGTACACAAGTGAATT+TGG - chr3_3:53441318-53441337 None:intergenic 35.0%
!!! TAACAAGCGATGCCATTTTA+CGG - chr3_3:53441409-53441428 None:intergenic 35.0%
ACCACCACATCAACTTAAAT+AGG + chr3_3:53441540-53441559 Msa0458110:intron 35.0%
!! ACCTATTTAAGTTGATGTGG+TGG - chr3_3:53441544-53441563 None:intergenic 35.0%
ACACATTAAATGCTGAGAAG+CGG + chr3_3:53441575-53441594 Msa0458110:intron 35.0%
!! TTGCATGAAAATGGGCTTTT+TGG - chr3_3:53441873-53441892 None:intergenic 35.0%
GAGCCAAGAACTTATGAAAT+AGG + chr3_3:53442163-53442182 Msa0458110:three_prime_UTR 35.0%
CCACCTATTTCATAAGTTCT+TGG - chr3_3:53442169-53442188 None:intergenic 35.0%
CCAAGAACTTATGAAATAGG+TGG + chr3_3:53442166-53442185 Msa0458110:three_prime_UTR 35.0%
! AGGAGCAATTTTCCACCATA+TGG + chr3_3:53437187-53437206 Msa0458110:CDS 40.0%
! TTTCCAAATGGTGATGCTAC+TGG + chr3_3:53437217-53437236 Msa0458110:CDS 40.0%
GCTACTGGTAGATTCTCAAA+TGG + chr3_3:53437232-53437251 Msa0458110:CDS 40.0%
!! GATTTCATCTCTGAGGCATT+TGG + chr3_3:53437268-53437287 Msa0458110:CDS 40.0%
GCCAATTGTTCCTGCTTATT+TGG + chr3_3:53437297-53437316 Msa0458110:CDS 40.0%
CATTTATTATCAGTGGGCCA+TGG - chr3_3:53438306-53438325 None:intergenic 40.0%
CATGGCCCACTGATAATAAA+TGG + chr3_3:53438304-53438323 Msa0458110:intron 40.0%
! AATTTTCCTCGTGAAAGCTC+GGG + chr3_3:53438358-53438377 Msa0458110:intron 40.0%
TCCAGGATGTGATACCTTTA+TGG + chr3_3:53438591-53438610 Msa0458110:intron 40.0%
!! TCCATAAAGGTATCACATCC+TGG - chr3_3:53438595-53438614 None:intergenic 40.0%
!!! AGCATCTTTTGGTGATGAGA+AGG + chr3_3:53438655-53438674 Msa0458110:CDS 40.0%
! GAGAAATTTTCCTTGCTCCT+AGG - chr3_3:53438847-53438866 None:intergenic 40.0%
GCAAGGAAAATTTCTCTGAC+AGG + chr3_3:53438851-53438870 Msa0458110:CDS 40.0%
TATGGGTCTACATAGTTGTG+TGG + chr3_3:53438919-53438938 Msa0458110:CDS 40.0%
AAGTTGAATAAGGACCTCCA+TGG + chr3_3:53438998-53439017 Msa0458110:CDS 40.0%
CTACCAATTGAAATCCATGG+AGG - chr3_3:53439015-53439034 None:intergenic 40.0%
GTTGCACAACCTTCTCAATT+TGG + chr3_3:53439067-53439086 Msa0458110:CDS 40.0%
ATTTAAAGAGACTTCAGGGG+AGG - chr3_3:53439810-53439829 None:intergenic 40.0%
!! CAGTGTTAAGTTGATAAGGG+AGG - chr3_3:53439904-53439923 None:intergenic 40.0%
TTTGTGTGGAAAGCTCAAAC+TGG - chr3_3:53439991-53440010 None:intergenic 40.0%
CGTTCTATCTCATAGAACAC+CGG + chr3_3:53440095-53440114 Msa0458110:intron 40.0%
! GTGGATTCAATTCTTTTCCC+TGG + chr3_3:53440161-53440180 Msa0458110:intron 40.0%
GGAAAGACAACAACCAGAAA+AGG + chr3_3:53440439-53440458 Msa0458110:intron 40.0%
GAGACGAAAAACAATGCAAG+TGG + chr3_3:53440484-53440503 Msa0458110:intron 40.0%
CGCTGGGTATATTTCATCTT+AGG - chr3_3:53440618-53440637 None:intergenic 40.0%
ATATTGATAGAGTTGAGGGG+AGG + chr3_3:53440850-53440869 Msa0458110:intron 40.0%
ACTATATTCATTGAGCCACC+TGG + chr3_3:53440905-53440924 Msa0458110:intron 40.0%
TTGTGCTATGGTACAAGTTG+TGG - chr3_3:53441064-53441083 None:intergenic 40.0%
GTTTATGCACATGGTTAGAG+AGG - chr3_3:53441291-53441310 None:intergenic 40.0%
TTTGGGAGAGTTTATGCACA+TGG - chr3_3:53441300-53441319 None:intergenic 40.0%
!!! AGGTTTTGAAGATGCAAGAG+TGG + chr3_3:53441803-53441822 Msa0458110:intron 40.0%
!!! GGTTTTGAAGATGCAAGAGT+GGG + chr3_3:53441804-53441823 Msa0458110:intron 40.0%
!!! GTTTTGAAGATGCAAGAGTG+GGG + chr3_3:53441805-53441824 Msa0458110:CDS 40.0%
TGGAACAGGTAGATTTGAGA+TGG + chr3_3:53441833-53441852 Msa0458110:CDS 40.0%
! GGAACAGGTAGATTTGAGAT+GGG + chr3_3:53441834-53441853 Msa0458110:CDS 40.0%
!! AGCTGACTTGTTCTTTCTGA+GGG - chr3_3:53441933-53441952 None:intergenic 40.0%
!! TAGCTGACTTGTTCTTTCTG+AGG - chr3_3:53441934-53441953 None:intergenic 40.0%
!! GGAGACTCTTCTGTTGATTC+AGG + chr3_3:53437136-53437155 Msa0458110:CDS 45.0%
CTACCAGTAGCATCACCATT+TGG - chr3_3:53437223-53437242 None:intergenic 45.0%
!! TGCCACTGATTTCATCTCTG+AGG + chr3_3:53437261-53437280 Msa0458110:CDS 45.0%
TGCCTCAGAGATGAAATCAG+TGG - chr3_3:53437266-53437285 None:intergenic 45.0%
!!! GGTGTTTGTTTTGCTTCTGC+TGG + chr3_3:53437352-53437371 Msa0458110:CDS 45.0%
! TGTTTTGCTTCTGCTGGTAC+TGG + chr3_3:53437358-53437377 Msa0458110:CDS 45.0%
!! TATCCCGACCGCTTTTCTAT+TGG + chr3_3:53438259-53438278 Msa0458110:intron 45.0%
TAGCCAATAGAAAAGCGGTC+GGG - chr3_3:53438265-53438284 None:intergenic 45.0%
GTAGCCAATAGAAAAGCGGT+CGG - chr3_3:53438266-53438285 None:intergenic 45.0%
GTGGGTAGCCAATAGAAAAG+CGG - chr3_3:53438270-53438289 None:intergenic 45.0%
CACACAGCTTGAAAGAAGGA+TGG + chr3_3:53438748-53438767 Msa0458110:CDS 45.0%
GGACCTCCATGGATTTCAAT+TGG + chr3_3:53439009-53439028 Msa0458110:CDS 45.0%
TTAACACCAATCTCCCCTGA+AGG + chr3_3:53439858-53439877 Msa0458110:intron 45.0%
AATTGACCTTCAGGGGAGAT+TGG - chr3_3:53439867-53439886 None:intergenic 45.0%
AGAGAACTACGGTAGAACTG+CGG + chr3_3:53440385-53440404 Msa0458110:intron 45.0%
! TTTGTCTCGCTGTCCTTTTC+TGG - chr3_3:53440455-53440474 None:intergenic 45.0%
GGACAGCGAGACAAAAACAA+CGG + chr3_3:53440460-53440479 Msa0458110:intron 45.0%
AACCTCTCTTCTTCATCGCT+GGG - chr3_3:53440634-53440653 None:intergenic 45.0%
! CGGAAATGTAACGGTGCTAA+CGG + chr3_3:53440780-53440799 Msa0458110:intron 45.0%
AACCTGCATGGTAGAGAAAG+TGG + chr3_3:53440935-53440954 Msa0458110:intron 45.0%
ACCTGCATGGTAGAGAAAGT+GGG + chr3_3:53440936-53440955 Msa0458110:intron 45.0%
TGCTATGGTACAAGTTGTGG+TGG - chr3_3:53441061-53441080 None:intergenic 45.0%
GTACCACTTGTGCCGTAAAA+TGG + chr3_3:53441394-53441413 Msa0458110:intron 45.0%
!!! ATGCCATTTTACGGCACAAG+TGG - chr3_3:53441400-53441419 None:intergenic 45.0%
TGCTGAGAAGCGGAAAATTG+TGG + chr3_3:53441585-53441604 Msa0458110:intron 45.0%
!! GCTGACTTGTTCTTTCTGAG+GGG - chr3_3:53441932-53441951 None:intergenic 45.0%
!!! ATTTTTTTATTAAATATATG+TGG + chr3_3:53439745-53439764 Msa0458110:intron 5.0%
AAAAGCGGTCGGGATAACGT+CGG - chr3_3:53438255-53438274 None:intergenic 50.0%
CATGGCCACAATACATGGGT+GGG - chr3_3:53438288-53438307 None:intergenic 50.0%
AATTGTCCCGAGCTTTCACG+AGG - chr3_3:53438367-53438386 None:intergenic 50.0%
TACCCAGCGATGAAGAAGAG+AGG + chr3_3:53440629-53440648 Msa0458110:intron 50.0%
GAACCTCTCTTCTTCATCGC+TGG - chr3_3:53440635-53440654 None:intergenic 50.0%
GCGATGAAGAAGAGAGGTTC+AGG + chr3_3:53440635-53440654 Msa0458110:intron 50.0%
! ATGTAACGGTGCTAACGGCA+AGG + chr3_3:53440785-53440804 Msa0458110:intron 50.0%
! TGTAACGGTGCTAACGGCAA+GGG + chr3_3:53440786-53440805 Msa0458110:intron 50.0%
TGCAGGTTCTATTAGCCAGG+TGG - chr3_3:53440923-53440942 None:intergenic 50.0%
CCATGCAGGTTCTATTAGCC+AGG - chr3_3:53440926-53440945 None:intergenic 50.0%
CCTGGCTAATAGAACCTGCA+TGG + chr3_3:53440923-53440942 Msa0458110:intron 50.0%
CCTGCATGGTAGAGAAAGTG+GGG + chr3_3:53440937-53440956 Msa0458110:intron 50.0%
GCACATGGTTAGAGAGGAGT+TGG - chr3_3:53441285-53441304 None:intergenic 50.0%
AAAGCGGTCGGGATAACGTC+GGG - chr3_3:53438254-53438273 None:intergenic 55.0%
GGCTACCCACCCATGTATTG+TGG + chr3_3:53438280-53438299 Msa0458110:intron 55.0%
CCATGGCCACAATACATGGG+TGG - chr3_3:53438289-53438308 None:intergenic 55.0%
CCACCCATGTATTGTGGCCA+TGG + chr3_3:53438286-53438305 Msa0458110:intron 55.0%
GGGCCATGGCCACAATACAT+GGG - chr3_3:53438292-53438311 None:intergenic 55.0%
TGGGCCATGGCCACAATACA+TGG - chr3_3:53438293-53438312 None:intergenic 55.0%
TCTGACAGGGTTACCTCCCA+TGG + chr3_3:53438865-53438884 Msa0458110:CDS 55.0%
CTGACAGGGTTACCTCCCAT+GGG + chr3_3:53438866-53438885 Msa0458110:CDS 55.0%
TGACAGGGTTACCTCCCATG+GGG + chr3_3:53438867-53438886 Msa0458110:CDS 55.0%
TCAAGTGGCAGACACCCCAT+GGG - chr3_3:53438884-53438903 None:intergenic 55.0%
TTCAAGTGGCAGACACCCCA+TGG - chr3_3:53438885-53438904 None:intergenic 55.0%
! TGGGGTGTCTGCCACTTGAA+AGG + chr3_3:53438885-53438904 Msa0458110:CDS 55.0%
! GGGGTGTCTGCCACTTGAAA+GGG + chr3_3:53438886-53438905 Msa0458110:CDS 55.0%
GGACTCAGATTCTGCCAAGC+AGG - chr3_3:53439970-53439989 None:intergenic 55.0%
AGACAAAAACGGCGGCGAGA+CGG + chr3_3:53440418-53440437 Msa0458110:intron 55.0%
CCCCACTTTCTCTACCATGC+AGG - chr3_3:53440940-53440959 None:intergenic 55.0%
GCATGGTAGAGAAAGTGGGG+TGG + chr3_3:53440940-53440959 Msa0458110:intron 55.0%
!! GATGCAAGAGTGGGGTGCTG+TGG + chr3_3:53441813-53441832 Msa0458110:CDS 60.0%
!! AGAGTGGGGTGCTGTGGAAC+AGG + chr3_3:53441819-53441838 Msa0458110:CDS 60.0%
AGTGGCAGACACCCCATGGG+AGG - chr3_3:53438881-53438900 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 53436815 53442268 53436815 ID=Msa0458110;Name=Msa0458110
chr3_3 mRNA 53436815 53442268 53436815 ID=Msa0458110-mRNA-1;Parent=Msa0458110;Name=Msa0458110-mRNA-1;_AED=0.06;_eAED=0.06;_QI=225|1|1|1|1|1|3|270|351
chr3_3 exon 53436815 53437408 53436815 ID=Msa0458110-mRNA-1:exon:10402;Parent=Msa0458110-mRNA-1
chr3_3 exon 53438596 53439088 53438596 ID=Msa0458110-mRNA-1:exon:10403;Parent=Msa0458110-mRNA-1
chr3_3 exon 53441805 53442268 53441805 ID=Msa0458110-mRNA-1:exon:10404;Parent=Msa0458110-mRNA-1
chr3_3 five_prime_UTR 53436815 53437039 53436815 ID=Msa0458110-mRNA-1:five_prime_utr;Parent=Msa0458110-mRNA-1
chr3_3 CDS 53437040 53437408 53437040 ID=Msa0458110-mRNA-1:cds;Parent=Msa0458110-mRNA-1
chr3_3 CDS 53438596 53439088 53438596 ID=Msa0458110-mRNA-1:cds;Parent=Msa0458110-mRNA-1
chr3_3 CDS 53441805 53441998 53441805 ID=Msa0458110-mRNA-1:cds;Parent=Msa0458110-mRNA-1
chr3_3 three_prime_UTR 53441999 53442268 53441999 ID=Msa0458110-mRNA-1:three_prime_utr;Parent=Msa0458110-mRNA-1
Gene Sequence

>Msa0458110

ATGATGAAAATGTACATTTTATGGCTCTTCTTTATTCAAATTTTGTTGCATGTTTCAATATCAAACAGTGGAAAAGTTCCAGCTATAATTGTTTTTGGAGACTCTTCTGTTGATTCAGGTAACAATAATTTCATTCCAACATTAGCTAGGAGCAATTTTCCACCATATGGTAAAGATTTTCCAAATGGTGATGCTACTGGTAGATTCTCAAATGGTAGAATTGCCACTGATTTCATCTCTGAGGCATTTGGAATTAAGCCAATTGTTCCTGCTTATTTGGATCCTACTTACGATATATCAGATTTTGCTACTGGTGTTTGTTTTGCTTCTGCTGGTACTGGATTTGATAATGCTACTGCAAATGTTGCTGATGTGATACCTTTATGGAAAGAAGTTGAATTCTACAAGGACTACCAAAAGAAATTGAAAGCATCTTTTGGTGATGAGAAGGCTAAAGAAATAATAAGGGAGTCTTTATATTTGGTTAGCATAGGAACAAATGATTTTCTTGAGAACTATTACACACAGCTTGAAAGAAGGATGGAATATAAAACTGTTCAAGAATATGAGGATTTTTTAATTGTTCTTGCTGAAAATTTCCTTAGAGAAATTTATGACCTAGGAGCAAGGAAAATTTCTCTGACAGGGTTACCTCCCATGGGGTGTCTGCCACTTGAAAGGGCCATAAATATTATGGGTCTACATAGTTGTGTGGAGTATTACAATGATGTTGCTTTGGAGTTCAATGCAAAATTGGGATGCTTAGTATCAAAGTTGAATAAGGACCTCCATGGATTTCAATTGGTAGATGCAAATGCTTATGATTTGCTACTGCAAATTGTTGCACAACCTTCTCAATTTGGTTTTGAAGATGCAAGAGTGGGGTGCTGTGGAACAGGTAGATTTGAGATGGGTTTCTTTTGTGATCCAAAAAGCCCATTTTCATGCAAAGATGCAAATAAATATGTATTTTGGGATGCATTTCACCCCTCAGAAAGAACAAGTCAGCTAGTAGCAAATTATTTGATAGAAAAACATATTGGGAAGTTTCTATGA

Protein sequence

>Msa0458110

MMKMYILWLFFIQILLHVSISNSGKVPAIIVFGDSSVDSGNNNFIPTLARSNFPPYGKDFPNGDATGRFSNGRIATDFISEAFGIKPIVPAYLDPTYDISDFATGVCFASAGTGFDNATANVADVIPLWKEVEFYKDYQKKLKASFGDEKAKEIIRESLYLVSIGTNDFLENYYTQLERRMEYKTVQEYEDFLIVLAENFLREIYDLGARKISLTGLPPMGCLPLERAINIMGLHSCVEYYNDVALEFNAKLGCLVSKLNKDLHGFQLVDANAYDLLLQIVAQPSQFGFEDARVGCCGTGRFEMGFFCDPKSPFSCKDANKYVFWDAFHPSERTSQLVANYLIEKHIGKFL*