AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0345210

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0345210 MtrunA17_Chr3g0109731 97.938 582 11 1 1 581 1 582 0.0 1186
Msa0345210 MtrunA17_Chr8g0370701 50.450 555 259 4 1 553 43 583 0.0 599
Msa0345210 MtrunA17_Chr5g0433241 53.286 563 233 8 1 551 1 545 0.0 588
Msa0345210 MtrunA17_Chr5g0396311 50.271 553 261 3 1 553 1 539 0.0 588
Msa0345210 MtrunA17_Chr4g0068151 51.792 558 254 8 1 551 7 556 0.0 577
Msa0345210 MtrunA17_Chr2g0301671 51.075 558 258 7 1 551 7 556 0.0 572
Msa0345210 MtrunA17_Chr5g0433231 52.151 558 248 8 1 551 1 546 0.0 555
Msa0345210 MtrunA17_Chr5g0396331 47.473 554 269 5 1 551 1 535 0.0 550
Msa0345210 MtrunA17_Chr5g0433221 50.538 558 257 7 1 551 1 546 0.0 542
Msa0345210 MtrunA17_Chr6g0471311 49.113 564 258 6 1 551 1 548 0.0 530
Msa0345210 MtrunA17_Chr8g0370731 49.693 489 230 4 67 553 20 494 3.75e-177 511
Msa0345210 MtrunA17_Chr5g0406681 41.547 556 300 11 3 551 29 566 5.91e-141 420
Msa0345210 MtrunA17_Chr4g0028411 26.460 548 360 12 14 552 27 540 1.13e-45 169
Msa0345210 MtrunA17_Chr5g0395431 28.205 546 342 15 18 549 73 582 9.66e-45 167
Msa0345210 MtrunA17_Chr2g0327341 27.978 554 341 16 14 552 27 537 1.55e-43 163
Msa0345210 MtrunA17_Chr6g0471921 28.442 552 339 14 15 554 5 512 1.57e-41 157
Msa0345210 MtrunA17_Chr1g0157401 26.577 523 336 12 37 546 65 552 1.87e-41 157
Msa0345210 MtrunA17_Chr3g0102411 26.486 555 333 17 19 549 33 536 1.99e-40 154
Msa0345210 MtrunA17_Chr4g0039791 27.079 517 316 13 49 547 81 554 6.05e-40 153
Msa0345210 MtrunA17_Chr1g0180541 26.825 548 351 16 14 546 28 540 2.57e-39 151
Msa0345210 MtrunA17_Chr4g0000461 28.312 551 334 17 25 556 36 544 3.31e-39 150
Msa0345210 MtrunA17_Chr8g0353341 27.366 486 303 12 37 502 62 517 3.82e-39 150
Msa0345210 MtrunA17_Chr4g0072561 26.354 554 341 16 18 549 35 543 1.35e-37 146
Msa0345210 MtrunA17_Chr5g0409791 26.602 515 331 13 49 547 78 561 7.37e-37 144
Msa0345210 MtrunA17_Chr1g0180551 26.259 556 348 16 14 546 97 613 1.64e-36 144
Msa0345210 MtrunA17_Chr5g0409771 26.742 531 324 17 36 547 64 548 9.12e-35 138
Msa0345210 MtrunA17_Chr1g0197391 25.849 530 334 16 43 556 82 568 6.69e-34 135
Msa0345210 MtrunA17_Chr3g0116251 27.989 368 223 8 194 546 208 548 5.05e-32 130
Msa0345210 MtrunA17_Chr3g0116271 27.945 365 230 7 194 546 207 550 7.05e-32 130
Msa0345210 MtrunA17_Chr1g0186071 24.470 519 335 9 39 549 82 551 1.65e-31 129
Msa0345210 MtrunA17_Chr2g0334131 33.448 290 172 8 266 549 5 279 2.03e-31 123
Msa0345210 MtrunA17_Chr2g0292471 24.864 551 345 19 39 547 27 550 5.85e-29 121
Msa0345210 MtrunA17_Chr4g0004101 28.980 245 155 7 306 547 96 324 6.97e-23 100
Msa0345210 MtrunA17_Chr4g0004841 29.528 254 146 9 306 547 101 333 2.43e-21 95.5
Msa0345210 MtrunA17_Chr7g0252691 23.845 541 359 18 40 550 206 723 3.17e-20 95.1
Msa0345210 MtrunA17_Chr1g0194371 24.644 491 283 18 41 469 78 543 2.10e-19 92.4
Msa0345210 MtrunA17_Chr8g0388081 23.838 495 267 21 41 462 19 476 3.44e-17 85.1
Msa0345210 MtrunA17_Chr1g0157431 26.667 285 185 7 37 312 65 334 1.08e-14 77.0
Msa0345210 MtrunA17_Chr7g0270221 29.439 214 137 6 259 469 301 503 1.80e-13 73.6
Msa0345210 MtrunA17_Chr3g0124631 33.000 200 100 8 306 484 426 612 3.61e-13 72.4
Msa0345210 MtrunA17_Chr5g0396691 21.497 521 292 18 41 480 80 564 3.96e-13 72.4
Msa0345210 MtrunA17_Chr1g0162621 20.492 488 307 14 40 469 79 543 1.70e-12 70.5
Msa0345210 MtrunA17_Chr1g0160041 32.948 173 94 6 306 469 424 583 7.89e-12 68.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0345210 AT1G65890.1 60.549 583 217 5 1 575 1 578 0.0 715
Msa0345210 AT1G65880.1 61.754 570 201 5 1 560 1 563 0.0 715
Msa0345210 AT1G66120.1 59.036 581 223 4 1 575 1 572 0.0 703
Msa0345210 AT1G68270.1 53.509 570 217 7 1 560 1 532 0.0 584
Msa0345210 AT1G20560.1 50.265 567 264 4 1 563 3 555 0.0 581
Msa0345210 AT3G16910.1 52.330 558 252 8 1 551 9 559 0.0 566
Msa0345210 AT5G16340.1 48.925 558 262 6 1 551 1 542 0.0 558
Msa0345210 AT1G21530.2 50.364 550 258 7 9 553 9 548 0.0 555
Msa0345210 AT2G17650.1 49.286 560 264 4 1 550 48 597 0.0 553
Msa0345210 AT5G16370.1 48.387 558 265 5 1 551 1 542 0.0 553
Msa0345210 AT1G21530.1 50.364 550 256 8 9 553 9 546 0.0 548
Msa0345210 AT1G21540.1 49.458 554 258 8 9 553 9 549 0.0 540
Msa0345210 AT1G75960.1 48.474 557 266 5 1 551 1 542 0.0 532
Msa0345210 AT1G77240.1 46.964 560 274 8 1 553 1 544 0.0 528
Msa0345210 AT1G20560.2 50.102 491 227 4 77 563 1 477 3.79e-172 497
Msa0345210 AT1G76290.1 45.144 556 279 8 1 551 1 535 4.70e-155 456
Msa0345210 AT3G21240.1 29.063 523 327 13 37 549 61 549 1.74e-49 180
Msa0345210 AT4G05160.1 27.076 554 345 14 17 552 30 542 4.24e-45 168
Msa0345210 AT1G20510.1 27.687 549 329 20 18 546 36 536 8.92e-45 167
Msa0345210 AT1G51680.1 29.197 548 337 16 19 549 43 556 1.88e-44 166
Msa0345210 AT1G20500.1 25.046 543 351 14 18 546 42 542 5.51e-43 162
Msa0345210 AT1G20480.1 27.481 524 328 16 37 546 72 557 1.79e-42 161
Msa0345210 AT4G19010.1 26.642 533 336 15 31 547 62 555 1.81e-42 161
Msa0345210 AT3G21230.1 28.843 527 327 12 37 549 71 563 5.22e-42 159
Msa0345210 AT1G65060.1 27.920 548 339 18 18 549 52 559 5.82e-41 156
Msa0345210 AT5G63380.1 26.190 546 326 16 17 546 66 550 1.11e-40 155
Msa0345210 AT3G48990.1 27.969 522 309 14 40 543 31 503 2.03e-38 148
Msa0345210 AT5G38120.1 26.972 545 337 17 18 546 43 542 2.67e-38 149
Msa0345210 AT1G51680.3 28.627 517 318 16 19 518 43 525 4.10e-38 148
Msa0345210 AT3G21240.2 28.667 450 284 12 37 476 61 483 1.33e-37 145
Msa0345210 AT3G21240.3 28.667 450 284 12 37 476 61 483 1.33e-37 145
Msa0345210 AT1G20510.2 28.033 478 283 18 18 475 36 472 1.12e-36 143
Msa0345210 AT5G38120.3 26.886 517 317 17 18 518 43 514 1.40e-33 134
Msa0345210 AT1G30520.2 25.090 554 373 14 20 549 13 548 3.50e-33 134
Msa0345210 AT1G30520.1 25.090 554 373 14 20 549 13 548 3.50e-33 134
Msa0345210 AT1G51680.2 28.632 475 295 15 19 476 43 490 2.16e-32 130
Msa0345210 AT1G62940.1 26.250 560 339 16 14 549 26 535 2.33e-32 131
Msa0345210 AT3G21230.3 27.621 496 311 12 37 518 71 532 3.23e-32 131
Msa0345210 AT1G20510.3 27.778 450 264 18 18 447 36 444 2.39e-30 124
Msa0345210 AT5G38120.4 26.160 474 296 13 18 475 43 478 3.64e-29 121
Msa0345210 AT5G38120.2 26.160 474 296 13 18 475 43 478 3.64e-29 121
Msa0345210 AT3G21230.2 27.533 454 288 11 37 476 71 497 3.51e-27 115
Msa0345210 AT1G65060.2 27.578 446 274 17 18 447 52 464 4.38e-27 115
Msa0345210 AT3G16170.1 25.065 387 241 11 189 547 236 601 1.64e-24 108
Msa0345210 AT1G20490.2 25.971 412 262 15 37 436 61 441 2.84e-23 103
Msa0345210 AT1G20490.1 25.971 412 262 15 37 436 61 441 2.84e-23 103
Msa0345210 AT1G30520.3 23.881 469 319 12 20 471 13 460 3.50e-21 97.4
Msa0345210 AT1G30520.4 23.881 469 319 12 20 471 13 460 3.50e-21 97.4
Msa0345210 AT1G64400.1 24.903 514 286 22 28 472 65 547 8.88e-21 97.1
Msa0345210 AT4G23850.1 24.324 518 281 20 41 480 81 565 4.17e-19 91.7
Msa0345210 AT5G36880.2 24.074 594 383 20 25 579 177 741 2.22e-18 89.7
Msa0345210 AT5G36880.6 24.456 597 377 21 25 579 127 691 2.37e-18 89.4
Msa0345210 AT5G36880.3 24.456 597 377 21 25 579 127 691 2.37e-18 89.4
Msa0345210 AT5G36880.5 24.456 597 377 21 25 579 127 691 2.37e-18 89.4
Msa0345210 AT5G36880.1 24.456 597 377 21 25 579 127 691 2.37e-18 89.4
Msa0345210 AT4G14070.1 21.658 591 321 23 20 501 102 659 8.39e-13 72.0
Msa0345210 AT4G11030.1 31.313 198 108 10 281 472 372 547 2.32e-12 70.5
Msa0345210 AT1G77590.2 32.558 172 96 6 306 469 274 433 1.36e-11 67.8
Msa0345210 AT1G77590.1 32.558 172 96 6 306 469 420 579 1.79e-11 67.4
Msa0345210 AT2G04350.2 30.418 263 138 13 306 551 449 683 2.96e-11 67.0
Msa0345210 AT2G04350.1 30.418 263 138 13 306 551 449 683 2.96e-11 67.0

Find 168 sgRNAs with CRISPR-Local

Find 198 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAGAATTTACCACACTTTA+TGG 0.126746 3_1:-4325503 Msa0345210:CDS
TATAACGTGGCCTTCAATTT+TGG 0.172282 3_1:-4327561 Msa0345210:five_prime_UTR
TCTAAAGATGTGATTATTTC+AGG 0.185792 3_1:-4325721 Msa0345210:CDS
CAAGGACTTTCACCCCATTT+TGG 0.195490 3_1:+4325610 None:intergenic
TGTCACATTATAGAGATTTA+TGG 0.205886 3_1:+4326239 None:intergenic
TATACATAAAGATGGTTATT+TGG 0.207931 3_1:-4325758 Msa0345210:CDS
ATTTCTTCAGGAAGGTAATT+TGG 0.214710 3_1:+4326522 None:intergenic
ATCTTACCTGTTAAAGTCTT+TGG 0.233560 3_1:+4325448 None:intergenic
TTATGATTGACTTGATTATT+AGG 0.237452 3_1:+4325358 None:intergenic
GCTCTCATCAAGAAAGTTAA+AGG 0.239728 3_1:+4327381 None:intergenic
CATGAGGCAAACACAAAATA+TGG 0.251810 3_1:+4325011 None:intergenic
AAGCGACGGCGAAAGCTTTC+GGG 0.254708 3_1:-4325813 Msa0345210:CDS
AAATGACTCAAATTAAATTA+TGG 0.260323 3_1:+4325054 None:intergenic
TCTTCTAGTCACTAAATTAA+TGG 0.261883 3_1:-4327600 Msa0345210:five_prime_UTR
GTATAGTTTGCTCCACATTT+TGG 0.280265 3_1:+4327414 None:intergenic
TTTAATGTAACACATGCTTA+TGG 0.280910 3_1:-4326072 Msa0345210:CDS
GATTTACCAAAGACTTTAAC+AGG 0.288395 3_1:-4325454 Msa0345210:CDS
TTGCAATGCCACATCCAAAA+TGG 0.295462 3_1:-4325624 Msa0345210:CDS
AATAAAACAGGTATCAGTTT+TGG 0.306205 3_1:-4326859 Msa0345210:intron
TATAGAAAATTTCATGTGAT+TGG 0.313408 3_1:+4327536 None:intergenic
TGACTATAAACAACACCTTT+TGG 0.314032 3_1:+4326444 None:intergenic
GAAAGTTAAAGGAGTGAGTA+TGG 0.331539 3_1:+4327392 None:intergenic
CATTCATCTTGAATTTCTTC+AGG 0.339619 3_1:+4326510 None:intergenic
GAAGCGACGGCGAAAGCTTT+CGG 0.344503 3_1:-4325814 Msa0345210:CDS
TTTAATCCTTGGTTGGGAAA+TGG 0.345052 3_1:-4326394 Msa0345210:CDS
TGTGGTTAAGAATGAGATTA+GGG 0.348530 3_1:+4327503 None:intergenic
TTCTTCCATGAGTAATCTTA+AGG 0.361126 3_1:+4326665 None:intergenic
TCATAATAATGACCAGCTTA+TGG 0.364109 3_1:-4325341 Msa0345210:CDS
GGTAATGTCCATAGATAAAC+TGG 0.364652 3_1:+4326363 None:intergenic
GTTAGTTGTTTCCACTTAGT+AGG 0.368641 3_1:-4325100 Msa0345210:three_prime_UTR
CGCATTGAGACGGTGGTTGA+TGG 0.387285 3_1:+4326770 None:intergenic
TCATACATTGCTGGAATGTT+TGG 0.387598 3_1:+4326834 None:intergenic
TAAAATAATATTGAAAATGA+TGG 0.388005 3_1:+4326200 None:intergenic
AAGTGAAACGGGTTCCTTCA+TGG 0.397922 3_1:+4327325 None:intergenic
TACCACAAAACACTTAGCTT+TGG 0.397967 3_1:+4325405 None:intergenic
TGGTAAATTCTTCCTACAAT+AGG 0.411253 3_1:+4325513 None:intergenic
TATGGACTAACTGAAGCAAC+AGG 0.418017 3_1:-4326054 Msa0345210:CDS
GTAAGAGATGGGAAAACAAT+GGG 0.423096 3_1:-4325889 Msa0345210:CDS
GATGTGTAATTCAATGTAAT+TGG 0.423792 3_1:+4326483 None:intergenic
TTTGAGTTTAATCCTTGGTT+GGG 0.424831 3_1:-4326400 Msa0345210:CDS
TTAATCCTTGGTTGGGAAAT+GGG 0.425386 3_1:-4326393 Msa0345210:CDS
TTTGTGAGTGGCAGAAGAAA+TGG 0.427336 3_1:-4326020 Msa0345210:CDS
TTACCTATGTTCCATTGTAA+TGG 0.427373 3_1:-4326345 Msa0345210:CDS
GAGCTCGCCTAGCCGGATTC+CGG 0.428306 3_1:+4326575 None:intergenic
TCTCCGGTGAATATACTAAC+TGG 0.428686 3_1:-4326144 Msa0345210:CDS
CTTCATGGATGACTGAGGTT+CGG 0.429624 3_1:+4327340 None:intergenic
TTGTGGTTAAGAATGAGATT+AGG 0.431591 3_1:+4327502 None:intergenic
AAATGCATCTCATACATTGC+TGG 0.433221 3_1:+4326825 None:intergenic
GTTATTTGGAAATTAAAGAT+AGG 0.433555 3_1:-4325744 Msa0345210:CDS
GACGGTGGTTGATGGTGTTT+AGG 0.435440 3_1:+4326778 None:intergenic
TGCAATGCCACATCCAAAAT+GGG 0.443909 3_1:-4325623 Msa0345210:CDS
GTAGTGAACCAGTTTATCTA+TGG 0.450766 3_1:-4326371 Msa0345210:CDS
GGGGATGGTTGGTTTAGAAC+TGG 0.460142 3_1:-4325793 Msa0345210:CDS
ACACTTTATGGTACCTAAGA+TGG 0.462947 3_1:-4325491 Msa0345210:CDS
GAGATTATGTTGAAGGGAAG+TGG 0.465461 3_1:-4325865 Msa0345210:CDS
AGTTTGTGACCAAGTGAAAC+GGG 0.471117 3_1:+4327314 None:intergenic
CTGAAGAAATTCAAGATGAA+TGG 0.471358 3_1:-4326509 Msa0345210:CDS
ATGGAGAGTGTGGTAAGAGA+TGG 0.472523 3_1:-4325901 Msa0345210:CDS
GAAACAACTAACAAGAAAGT+TGG 0.473458 3_1:+4325111 None:intergenic
TAAACACTCCCACCGGAATC+CGG 0.473541 3_1:-4326587 Msa0345210:CDS
CTATGTTCCATTGTAATGGT+TGG 0.477230 3_1:-4326341 Msa0345210:CDS
CTTTGAGTTTAATCCTTGGT+TGG 0.482972 3_1:-4326401 Msa0345210:CDS
CGAAAGCTTTCGGGGATGGT+TGG 0.487803 3_1:-4325804 Msa0345210:CDS
CGCCTCAGAGTGTCGAAGAA+TGG 0.487931 3_1:+4326734 None:intergenic
AAGTTTGTGACCAAGTGAAA+CGG 0.494196 3_1:+4327313 None:intergenic
TACTATCAAAGCAACTTCCT+TGG 0.494935 3_1:-4327657 None:intergenic
ACGGCGAAAGCTTTCGGGGA+TGG 0.495228 3_1:-4325808 Msa0345210:CDS
TTCACACTTCAACAATTTGA+GGG 0.495504 3_1:-4325221 Msa0345210:three_prime_UTR
TGCCACTCACAAACAAGTGC+TGG 0.499001 3_1:+4326030 None:intergenic
TGGTTTAGAACTGGTGATGT+TGG 0.499794 3_1:-4325784 Msa0345210:CDS
ATGAGATAATTACCTATTGT+AGG 0.504104 3_1:-4325525 Msa0345210:CDS
TGGAGAGTGTGGTAAGAGAT+GGG 0.505965 3_1:-4325900 Msa0345210:CDS
ATTCGTATCAAAAGCAAAAG+AGG 0.506420 3_1:-4326688 Msa0345210:CDS
AAGGGAAGTGGAATCATGAT+GGG 0.506638 3_1:-4325853 Msa0345210:CDS
GTTCACACTTCAACAATTTG+AGG 0.509906 3_1:-4325222 Msa0345210:three_prime_UTR
ACAGCAGCTTCTAAAACCTT+AGG 0.514521 3_1:+4325649 None:intergenic
TGCAATATTGAGAGCACGGA+GGG 0.514867 3_1:+4327263 None:intergenic
CATCTTGAATTTCTTCAGGA+AGG 0.517226 3_1:+4326514 None:intergenic
AGGAAGCGAGGCGGCGACAC+CGG 0.518047 3_1:+4327286 None:intergenic
AGAGGCCTTAAGATTACTCA+TGG 0.518068 3_1:-4326670 Msa0345210:CDS
GTGATTGGCACCAAAATTGA+AGG 0.518293 3_1:+4327551 None:intergenic
CGTATTCGAGCTCGCCTAGC+CGG 0.519450 3_1:+4326568 None:intergenic
CTTGAGAAAATCGAGCCACT+TGG 0.519790 3_1:-4326096 Msa0345210:CDS
ATGAAGGAACCCGTTTCACT+TGG 0.520277 3_1:-4327323 Msa0345210:CDS
ATCTGCTTCAGCTTGTTATG+TGG 0.520395 3_1:-4325171 Msa0345210:three_prime_UTR
AGTACTTTGAGTTTAATCCT+TGG 0.521867 3_1:-4326405 Msa0345210:CDS
CTCGCCTAGCCGGATTCCGG+TGG 0.524552 3_1:+4326578 None:intergenic
ATTACATTGAATTACACATC+AGG 0.525480 3_1:-4326480 Msa0345210:CDS
CGAGCTCGAATACGAGCAAA+TGG 0.527362 3_1:-4326559 Msa0345210:CDS
TGTTCTTTATAGTCATCCTA+AGG 0.533616 3_1:-4325665 Msa0345210:CDS
CGATGCTTAAAGCGCGACAA+GGG 0.533885 3_1:-4325972 Msa0345210:CDS
AACTGGTGGAGCACCACCCC+CGG 0.535495 3_1:-4326127 Msa0345210:CDS
TGTGACACTAAGGAAGAATG+AGG 0.538924 3_1:-4325581 Msa0345210:CDS
GAAGGGAAGTGGAATCATGA+TGG 0.539328 3_1:-4325854 Msa0345210:CDS
AAAATAATATTGAAAATGAT+GGG 0.545393 3_1:+4326201 None:intergenic
GTTGGTGTTATACATAAAGA+TGG 0.545404 3_1:-4325766 Msa0345210:CDS
AAAGAGAGTCATAAAATCTC+CGG 0.548039 3_1:-4326160 Msa0345210:CDS
GACGAGATAGAGCCATAAGC+TGG 0.550059 3_1:+4325329 None:intergenic
TCGAAGAATGGTGGCTATGT+TGG 0.554863 3_1:+4326746 None:intergenic
CAACCATTACAATGGAACAT+AGG 0.559310 3_1:+4326342 None:intergenic
CACTACCCATTTCCCAACCA+AGG 0.560736 3_1:+4326388 None:intergenic
CACGGAGGGAGGAAGCGAGG+CGG 0.564152 3_1:+4327277 None:intergenic
GGTACAACTTCAGAACCAAA+AGG 0.565976 3_1:-4326459 Msa0345210:CDS
TCTTTGCAATATTGAGAGCA+CGG 0.566149 3_1:+4327259 None:intergenic
TACGAGCAAATGGTTCATCA+TGG 0.574224 3_1:-4326549 Msa0345210:CDS
GTAATGGTTGGACATTCACT+TGG 0.575202 3_1:-4326329 Msa0345210:CDS
CTTGGTCACAAACTTATGAC+CGG 0.576665 3_1:-4327305 Msa0345210:CDS
CATCTATCACAATCACTAGT+GGG 0.580127 3_1:+4326613 None:intergenic
TGGTTAAGAATGAGATTAGG+GGG 0.581716 3_1:+4327505 None:intergenic
GATGGTGTTTAGGACAGCAC+CGG 0.583797 3_1:+4326788 None:intergenic
TAATGGTTGGACATTCACTT+GGG 0.583819 3_1:-4326328 Msa0345210:CDS
GTAACTACAACTAATTCCAA+TGG 0.584509 3_1:-4327445 Msa0345210:exon
TTTAGGACAGCACCGGCCAT+AGG 0.587665 3_1:+4326795 None:intergenic
GAGCACGGAGGGAGGAAGCG+AGG 0.588763 3_1:+4327274 None:intergenic
GTTGTAGTTACCTAAGTGAG+AGG 0.592569 3_1:+4327457 None:intergenic
TCTTGAAACAATGGAGAGTG+TGG 0.595422 3_1:-4325911 Msa0345210:CDS
GGCCAGCACTTGTTTGTGAG+TGG 0.595693 3_1:-4326032 Msa0345210:CDS
GGTGTTGTTTATAGTCATAG+AGG 0.595730 3_1:-4326438 Msa0345210:CDS
TCATCTATCACAATCACTAG+TGG 0.596057 3_1:+4326612 None:intergenic
TGTGAAGAATCTTGAAACAA+TGG 0.596126 3_1:-4325920 Msa0345210:CDS
AAATTATGGAAGATATAACT+AGG 0.597180 3_1:+4325068 None:intergenic
ACTCCCACCGGAATCCGGCT+AGG 0.597247 3_1:-4326582 Msa0345210:CDS
AGCGACGGCGAAAGCTTTCG+GGG 0.597981 3_1:-4325812 Msa0345210:CDS
CGAACCTCAGTCATCCATGA+AGG 0.598539 3_1:-4327339 Msa0345210:CDS
AAGAGATGGGAAAACAATGG+GGG 0.600740 3_1:-4325887 Msa0345210:CDS
TTTCTCAAGTAGGGACGCCG+GGG 0.601501 3_1:+4326110 None:intergenic
CTATGTTGGCCGCATTGAGA+CGG 0.602111 3_1:+4326760 None:intergenic
GGACTGCTCAACCTACTAAG+TGG 0.602551 3_1:+4325089 None:intergenic
TCGATGCTTAAAGCGCGACA+AGG 0.604868 3_1:-4325973 Msa0345210:CDS
CCACCAGTTAGTATATTCAC+CGG 0.607871 3_1:+4326141 None:intergenic
CTCAGAGTGTCGAAGAATGG+TGG 0.608683 3_1:+4326737 None:intergenic
TTGTAGTTACCTAAGTGAGA+GGG 0.608900 3_1:+4327458 None:intergenic
ACGTTATATGTGAAGAGGGT+GGG 0.610172 3_1:+4327576 None:intergenic
TGAATGTCCAACCATTACAA+TGG 0.613092 3_1:+4326334 None:intergenic
GGCCACGTTATATGTGAAGA+GGG 0.615450 3_1:+4327572 None:intergenic
CACGTTATATGTGAAGAGGG+TGG 0.618052 3_1:+4327575 None:intergenic
GGTAAGAGATGGGAAAACAA+TGG 0.619269 3_1:-4325890 Msa0345210:CDS
ACTTGGGGTGTAGCTGCAAG+AGG 0.619778 3_1:-4326312 Msa0345210:CDS
AGGCCACGTTATATGTGAAG+AGG 0.621771 3_1:+4327571 None:intergenic
TAAGAGATGGGAAAACAATG+GGG 0.626561 3_1:-4325888 Msa0345210:CDS
GATGCTTAAAGCGCGACAAG+GGG 0.626984 3_1:-4325971 Msa0345210:CDS
TCGCCTAGCCGGATTCCGGT+GGG 0.628633 3_1:+4326579 None:intergenic
GATGCAGTGAAACTTGTATG+TGG 0.628757 3_1:+4327621 None:intergenic
ATGGATAACCTACCAAAATG+TGG 0.629287 3_1:-4327426 Msa0345210:CDS
AATATTGAGAGCACGGAGGG+AGG 0.632194 3_1:+4327266 None:intergenic
GATGACATAAACACTCCCAC+CGG 0.634917 3_1:-4326594 Msa0345210:CDS
CTTAGTGTCACAAAAGCACA+AGG 0.636960 3_1:+4325592 None:intergenic
TTCTCAAGTAGGGACGCCGG+GGG 0.637975 3_1:+4326111 None:intergenic
TGTTGGCCGCATTGAGACGG+TGG 0.638475 3_1:+4326763 None:intergenic
CACCATTCTTCGACACTCTG+AGG 0.640216 3_1:-4326736 Msa0345210:CDS
TGTGTTACATTAAAACCAAG+TGG 0.640733 3_1:+4326081 None:intergenic
AATGGTTGGACATTCACTTG+GGG 0.644019 3_1:-4326327 Msa0345210:CDS
CACCCTCTTCACATATAACG+TGG 0.645497 3_1:-4327574 Msa0345210:five_prime_UTR
CCGGTGAATATACTAACTGG+TGG 0.647354 3_1:-4326141 Msa0345210:CDS
AAAGATGTGATTATTTCAGG+AGG 0.649768 3_1:-4325718 Msa0345210:CDS
TGATTCTTGTTGTGTTACTG+AGG 0.660637 3_1:-4325548 Msa0345210:CDS
ATCTTAGGTACCATAAAGTG+TGG 0.661614 3_1:+4325493 None:intergenic
GTGGAAGTTATAGTATACCA+AGG 0.670695 3_1:+4327640 None:intergenic
AGGGAAGTGGAATCATGATG+GGG 0.670807 3_1:-4325852 Msa0345210:CDS
GTGGTTAAGAATGAGATTAG+GGG 0.674481 3_1:+4327504 None:intergenic
GACACTAAGGAAGAATGAGG+AGG 0.677688 3_1:-4325578 Msa0345210:CDS
TGGGGTGTAGCTGCAAGAGG+AGG 0.680125 3_1:-4326309 Msa0345210:CDS
GGTTAAGAATGAGATTAGGG+GGG 0.681147 3_1:+4327506 None:intergenic
GGTTCCTTCATGGATGACTG+AGG 0.686748 3_1:+4327335 None:intergenic
GCAATGCCACATCCAAAATG+GGG 0.688593 3_1:-4325622 Msa0345210:CDS
ATGGACTAACTGAAGCAACA+GGG 0.714883 3_1:-4326053 Msa0345210:CDS
TTGCAATATTGAGAGCACGG+AGG 0.733139 3_1:+4327262 None:intergenic
CATCAACCACCGTCTCAATG+CGG 0.733801 3_1:-4326769 Msa0345210:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATAATATTGAAAATGAT+GGG + chr3_1:4326467-4326486 None:intergenic 10.0%
!! TAAAATAATATTGAAAATGA+TGG + chr3_1:4326468-4326487 None:intergenic 10.0%
!!! ATCATTTTCAATATTATTTT+AGG - chr3_1:4326467-4326486 Msa0345210:CDS 10.0%
!! TATTACAATATTTGATATTG+CGG + chr3_1:4325693-4325712 None:intergenic 15.0%
!! AAAAAGTTCTTTATATATTG+TGG + chr3_1:4327529-4327548 None:intergenic 15.0%
!! AAATGACTCAAATTAAATTA+TGG + chr3_1:4327614-4327633 None:intergenic 15.0%
!! TATAGAAAATTTCATGTGAT+TGG + chr3_1:4325132-4325151 None:intergenic 20.0%
!! GCGATTTATAAAAACTAAAT+TGG - chr3_1:4325774-4325793 Msa0345210:CDS 20.0%
!!! TGGTTTTTGTTTAATAAAAC+AGG - chr3_1:4325794-4325813 Msa0345210:CDS 20.0%
!! TATACATAAAGATGGTTATT+TGG - chr3_1:4326907-4326926 Msa0345210:intron 20.0%
!! GTTATTTGGAAATTAAAGAT+AGG - chr3_1:4326921-4326940 Msa0345210:intron 20.0%
!!! TTATGATTGACTTGATTATT+AGG + chr3_1:4327310-4327329 None:intergenic 20.0%
!! AAATTATGGAAGATATAACT+AGG + chr3_1:4327600-4327619 None:intergenic 20.0%
! TCTTCTAGTCACTAAATTAA+TGG - chr3_1:4325065-4325084 Msa0345210:three_prime_UTR 25.0%
!! AAATGAGAAATTTTGTGTTG+TGG + chr3_1:4325183-4325202 None:intergenic 25.0%
! CAAAATGCAGTATCAAATAT+TGG + chr3_1:4325669-4325688 None:intergenic 25.0%
!! AATAAAACAGGTATCAGTTT+TGG - chr3_1:4325806-4325825 Msa0345210:CDS 25.0%
! GATGTGTAATTCAATGTAAT+TGG + chr3_1:4326185-4326204 None:intergenic 25.0%
! ATTACATTGAATTACACATC+AGG - chr3_1:4326185-4326204 Msa0345210:CDS 25.0%
! TGTCACATTATAGAGATTTA+TGG + chr3_1:4326429-4326448 None:intergenic 25.0%
! TTTAATGTAACACATGCTTA+TGG - chr3_1:4326593-4326612 Msa0345210:CDS 25.0%
!!! TTTTAAAGATAAAGAAGCGA+CGG - chr3_1:4326838-4326857 Msa0345210:CDS 25.0%
! TCTAAAGATGTGATTATTTC+AGG - chr3_1:4326944-4326963 Msa0345210:intron 25.0%
! ATGAGATAATTACCTATTGT+AGG - chr3_1:4327140-4327159 Msa0345210:intron 25.0%
TGTGGTTAAGAATGAGATTA+GGG + chr3_1:4325165-4325184 None:intergenic 30.0%
TTGTGGTTAAGAATGAGATT+AGG + chr3_1:4325166-4325185 None:intergenic 30.0%
GTAACTACAACTAATTCCAA+TGG - chr3_1:4325220-4325239 Msa0345210:three_prime_UTR 30.0%
TGATATCATATCCTAGATTG+CGG + chr3_1:4325631-4325650 None:intergenic 30.0%
ATTCGTATCAAAAGCAAAAG+AGG - chr3_1:4325977-4325996 Msa0345210:CDS 30.0%
TTCTTCCATGAGTAATCTTA+AGG + chr3_1:4326003-4326022 None:intergenic 30.0%
ATTTCTTCAGGAAGGTAATT+TGG + chr3_1:4326146-4326165 None:intergenic 30.0%
CATTCATCTTGAATTTCTTC+AGG + chr3_1:4326158-4326177 None:intergenic 30.0%
CTGAAGAAATTCAAGATGAA+TGG - chr3_1:4326156-4326175 Msa0345210:CDS 30.0%
! TGACTATAAACAACACCTTT+TGG + chr3_1:4326224-4326243 None:intergenic 30.0%
! AGTACTTTGAGTTTAATCCT+TGG - chr3_1:4326260-4326279 Msa0345210:CDS 30.0%
! TTTGAGTTTAATCCTTGGTT+GGG - chr3_1:4326265-4326284 Msa0345210:CDS 30.0%
TTACCTATGTTCCATTGTAA+TGG - chr3_1:4326320-4326339 Msa0345210:CDS 30.0%
AAAGAGAGTCATAAAATCTC+CGG - chr3_1:4326505-4326524 Msa0345210:CDS 30.0%
TGTGTTACATTAAAACCAAG+TGG + chr3_1:4326587-4326606 None:intergenic 30.0%
TGTGAAGAATCTTGAAACAA+TGG - chr3_1:4326745-4326764 Msa0345210:CDS 30.0%
!! GTTGGTGTTATACATAAAGA+TGG - chr3_1:4326899-4326918 Msa0345210:intron 30.0%
AAAGATGTGATTATTTCAGG+AGG - chr3_1:4326947-4326966 Msa0345210:intron 30.0%
TGTTCTTTATAGTCATCCTA+AGG - chr3_1:4327000-4327019 Msa0345210:intron 30.0%
TGGTAAATTCTTCCTACAAT+AGG + chr3_1:4327155-4327174 None:intergenic 30.0%
GAAGAATTTACCACACTTTA+TGG - chr3_1:4327162-4327181 Msa0345210:intron 30.0%
!!! ACCTAAGATGGTTGTTTTTA+TGG - chr3_1:4327186-4327205 Msa0345210:intron 30.0%
TCCATAAAAACAACCATCTT+AGG + chr3_1:4327190-4327209 None:intergenic 30.0%
!!! TAAGATGGTTGTTTTTATGG+AGG - chr3_1:4327189-4327208 Msa0345210:intron 30.0%
GATTTACCAAAGACTTTAAC+AGG - chr3_1:4327211-4327230 Msa0345210:intron 30.0%
ATCTTACCTGTTAAAGTCTT+TGG + chr3_1:4327220-4327239 None:intergenic 30.0%
TCATAATAATGACCAGCTTA+TGG - chr3_1:4327324-4327343 Msa0345210:CDS 30.0%
TTCACACTTCAACAATTTGA+GGG - chr3_1:4327444-4327463 Msa0345210:exon 30.0%
GAAACAACTAACAAGAAAGT+TGG + chr3_1:4327557-4327576 None:intergenic 30.0%
GTGGAAGTTATAGTATACCA+AGG + chr3_1:4325028-4325047 None:intergenic 35.0%
! TATAACGTGGCCTTCAATTT+TGG - chr3_1:4325104-4325123 Msa0345210:three_prime_UTR 35.0%
TGGTTAAGAATGAGATTAGG+GGG + chr3_1:4325163-4325182 None:intergenic 35.0%
GTGGTTAAGAATGAGATTAG+GGG + chr3_1:4325164-4325183 None:intergenic 35.0%
!!! CATTTTTTTCCCTCTCACTT+AGG - chr3_1:4325198-4325217 Msa0345210:three_prime_UTR 35.0%
TTGTAGTTACCTAAGTGAGA+GGG + chr3_1:4325210-4325229 None:intergenic 35.0%
!! CATTTTGGTAGGTTATCCAT+TGG + chr3_1:4325239-4325258 None:intergenic 35.0%
ATGGATAACCTACCAAAATG+TGG - chr3_1:4325239-4325258 Msa0345210:three_prime_UTR 35.0%
!!! GTATAGTTTGCTCCACATTT+TGG + chr3_1:4325254-4325273 None:intergenic 35.0%
GAAAGTTAAAGGAGTGAGTA+TGG + chr3_1:4325276-4325295 None:intergenic 35.0%
GCTCTCATCAAGAAAGTTAA+AGG + chr3_1:4325287-4325306 None:intergenic 35.0%
AAGTTTGTGACCAAGTGAAA+CGG + chr3_1:4325355-4325374 None:intergenic 35.0%
TCTTTGCAATATTGAGAGCA+CGG + chr3_1:4325409-4325428 None:intergenic 35.0%
TCATACATTGCTGGAATGTT+TGG + chr3_1:4325834-4325853 None:intergenic 35.0%
AAATGCATCTCATACATTGC+TGG + chr3_1:4325843-4325862 None:intergenic 35.0%
CATCTATCACAATCACTAGT+GGG + chr3_1:4326055-4326074 None:intergenic 35.0%
TCATCTATCACAATCACTAG+TGG + chr3_1:4326056-4326075 None:intergenic 35.0%
CATCTTGAATTTCTTCAGGA+AGG + chr3_1:4326154-4326173 None:intergenic 35.0%
!! GGTGTTGTTTATAGTCATAG+AGG - chr3_1:4326227-4326246 Msa0345210:CDS 35.0%
! CTTTGAGTTTAATCCTTGGT+TGG - chr3_1:4326264-4326283 Msa0345210:CDS 35.0%
TTTAATCCTTGGTTGGGAAA+TGG - chr3_1:4326271-4326290 Msa0345210:CDS 35.0%
TTAATCCTTGGTTGGGAAAT+GGG - chr3_1:4326272-4326291 Msa0345210:CDS 35.0%
GTAGTGAACCAGTTTATCTA+TGG - chr3_1:4326294-4326313 Msa0345210:CDS 35.0%
GGTAATGTCCATAGATAAAC+TGG + chr3_1:4326305-4326324 None:intergenic 35.0%
CAACCATTACAATGGAACAT+AGG + chr3_1:4326326-4326345 None:intergenic 35.0%
CTATGTTCCATTGTAATGGT+TGG - chr3_1:4326324-4326343 Msa0345210:CDS 35.0%
TGAATGTCCAACCATTACAA+TGG + chr3_1:4326334-4326353 None:intergenic 35.0%
TAATGGTTGGACATTCACTT+GGG - chr3_1:4326337-4326356 Msa0345210:CDS 35.0%
! TTTATGACTCTCTTTTCGCT+TGG + chr3_1:4326500-4326519 None:intergenic 35.0%
GTAAGAGATGGGAAAACAAT+GGG - chr3_1:4326776-4326795 Msa0345210:CDS 35.0%
TAAGAGATGGGAAAACAATG+GGG - chr3_1:4326777-4326796 Msa0345210:CDS 35.0%
! TGATTCTTGTTGTGTTACTG+AGG - chr3_1:4327117-4327136 Msa0345210:intron 35.0%
ATCTTAGGTACCATAAAGTG+TGG + chr3_1:4327175-4327194 None:intergenic 35.0%
ACACTTTATGGTACCTAAGA+TGG - chr3_1:4327174-4327193 Msa0345210:intron 35.0%
TACCACAAAACACTTAGCTT+TGG + chr3_1:4327263-4327282 None:intergenic 35.0%
GTTCACACTTCAACAATTTG+AGG - chr3_1:4327443-4327462 Msa0345210:exon 35.0%
! GTTAGTTGTTTCCACTTAGT+AGG - chr3_1:4327565-4327584 Msa0345210:five_prime_UTR 35.0%
GATGCAGTGAAACTTGTATG+TGG + chr3_1:4325047-4325066 None:intergenic 40.0%
ACGTTATATGTGAAGAGGGT+GGG + chr3_1:4325092-4325111 None:intergenic 40.0%
GTGATTGGCACCAAAATTGA+AGG + chr3_1:4325117-4325136 None:intergenic 40.0%
GGTTAAGAATGAGATTAGGG+GGG + chr3_1:4325162-4325181 None:intergenic 40.0%
GTTGTAGTTACCTAAGTGAG+AGG + chr3_1:4325211-4325230 None:intergenic 40.0%
!! AGTTTGCTCCACATTTTGGT+AGG + chr3_1:4325250-4325269 None:intergenic 40.0%
AGTTTGTGACCAAGTGAAAC+GGG + chr3_1:4325354-4325373 None:intergenic 40.0%
CTTGGTCACAAACTTATGAC+CGG - chr3_1:4325360-4325379 Msa0345210:CDS 40.0%
! GATGCATTTTGCAGTACCTA+TGG - chr3_1:4325854-4325873 Msa0345210:CDS 40.0%
AGAGGCCTTAAGATTACTCA+TGG - chr3_1:4325995-4326014 Msa0345210:CDS 40.0%
TACGAGCAAATGGTTCATCA+TGG - chr3_1:4326116-4326135 Msa0345210:CDS 40.0%
GGTACAACTTCAGAACCAAA+AGG - chr3_1:4326206-4326225 Msa0345210:CDS 40.0%
GTAATGGTTGGACATTCACT+TGG - chr3_1:4326336-4326355 Msa0345210:CDS 40.0%
AATGGTTGGACATTCACTTG+GGG - chr3_1:4326338-4326357 Msa0345210:CDS 40.0%
TCTCCGGTGAATATACTAAC+TGG - chr3_1:4326521-4326540 Msa0345210:CDS 40.0%
CCACCAGTTAGTATATTCAC+CGG + chr3_1:4326527-4326546 None:intergenic 40.0%
! TGGCTCGATTTTCTCAAGTA+GGG + chr3_1:4326567-4326586 None:intergenic 40.0%
! TATGGACTAACTGAAGCAAC+AGG - chr3_1:4326611-4326630 Msa0345210:CDS 40.0%
! ATGGACTAACTGAAGCAACA+GGG - chr3_1:4326612-4326631 Msa0345210:CDS 40.0%
TTTGTGAGTGGCAGAAGAAA+TGG - chr3_1:4326645-4326664 Msa0345210:CDS 40.0%
!!! AGCATCGATTGCTCTCTTTT+CGG + chr3_1:4326680-4326699 None:intergenic 40.0%
TCTTGAAACAATGGAGAGTG+TGG - chr3_1:4326754-4326773 Msa0345210:CDS 40.0%
GGTAAGAGATGGGAAAACAA+TGG - chr3_1:4326775-4326794 Msa0345210:CDS 40.0%
AAGAGATGGGAAAACAATGG+GGG - chr3_1:4326778-4326797 Msa0345210:CDS 40.0%
AATGGGGGAGATTATGTTGA+AGG - chr3_1:4326793-4326812 Msa0345210:CDS 40.0%
ATGGGGGAGATTATGTTGAA+GGG - chr3_1:4326794-4326813 Msa0345210:CDS 40.0%
GAGATTATGTTGAAGGGAAG+TGG - chr3_1:4326800-4326819 Msa0345210:CDS 40.0%
AAGGGAAGTGGAATCATGAT+GGG - chr3_1:4326812-4326831 Msa0345210:CDS 40.0%
! TGGTTTAGAACTGGTGATGT+TGG - chr3_1:4326881-4326900 Msa0345210:intron 40.0%
!! ACAGCAGCTTCTAAAACCTT+AGG + chr3_1:4327019-4327038 None:intergenic 40.0%
!!! TAAGGTTTTAGAAGCTGCTG+TGG - chr3_1:4327018-4327037 Msa0345210:intron 40.0%
TTGCAATGCCACATCCAAAA+TGG - chr3_1:4327041-4327060 Msa0345210:intron 40.0%
TGCAATGCCACATCCAAAAT+GGG - chr3_1:4327042-4327061 Msa0345210:intron 40.0%
! CTTAGTGTCACAAAAGCACA+AGG + chr3_1:4327076-4327095 None:intergenic 40.0%
! CTTGTGCTTTTGTGACACTA+AGG - chr3_1:4327074-4327093 Msa0345210:intron 40.0%
TGTGACACTAAGGAAGAATG+AGG - chr3_1:4327084-4327103 Msa0345210:intron 40.0%
! AGCCAAAGCTAAGTGTTTTG+TGG - chr3_1:4327258-4327277 Msa0345210:CDS 40.0%
!! ATCTGCTTCAGCTTGTTATG+TGG - chr3_1:4327494-4327513 Msa0345210:five_prime_UTR 40.0%
CACGTTATATGTGAAGAGGG+TGG + chr3_1:4325093-4325112 None:intergenic 45.0%
CACCCTCTTCACATATAACG+TGG - chr3_1:4325091-4325110 Msa0345210:three_prime_UTR 45.0%
GGCCACGTTATATGTGAAGA+GGG + chr3_1:4325096-4325115 None:intergenic 45.0%
AGGCCACGTTATATGTGAAG+AGG + chr3_1:4325097-4325116 None:intergenic 45.0%
CTTCATGGATGACTGAGGTT+CGG + chr3_1:4325328-4325347 None:intergenic 45.0%
! AAGTGAAACGGGTTCCTTCA+TGG + chr3_1:4325343-4325362 None:intergenic 45.0%
ATGAAGGAACCCGTTTCACT+TGG - chr3_1:4325342-4325361 Msa0345210:CDS 45.0%
! TGCAATATTGAGAGCACGGA+GGG + chr3_1:4325405-4325424 None:intergenic 45.0%
! TTGCAATATTGAGAGCACGG+AGG + chr3_1:4325406-4325425 None:intergenic 45.0%
! CATTTTGCAGTACCTATGGC+CGG - chr3_1:4325858-4325877 Msa0345210:CDS 45.0%
TCGAAGAATGGTGGCTATGT+TGG + chr3_1:4325922-4325941 None:intergenic 45.0%
GATGACATAAACACTCCCAC+CGG - chr3_1:4326071-4326090 Msa0345210:CDS 45.0%
CCGGTGAATATACTAACTGG+TGG - chr3_1:4326524-4326543 Msa0345210:CDS 45.0%
! ATTTTCTCAAGTAGGGACGC+CGG + chr3_1:4326560-4326579 None:intergenic 45.0%
! GTGGCTCGATTTTCTCAAGT+AGG + chr3_1:4326568-4326587 None:intergenic 45.0%
CTTGAGAAAATCGAGCCACT+TGG - chr3_1:4326569-4326588 Msa0345210:CDS 45.0%
! ATGGAGAGTGTGGTAAGAGA+TGG - chr3_1:4326764-4326783 Msa0345210:CDS 45.0%
! TGGAGAGTGTGGTAAGAGAT+GGG - chr3_1:4326765-4326784 Msa0345210:CDS 45.0%
GAAGGGAAGTGGAATCATGA+TGG - chr3_1:4326811-4326830 Msa0345210:CDS 45.0%
AGGGAAGTGGAATCATGATG+GGG - chr3_1:4326813-4326832 Msa0345210:CDS 45.0%
GCAATGCCACATCCAAAATG+GGG - chr3_1:4327043-4327062 Msa0345210:intron 45.0%
! CTTTCACCCCATTTTGGATG+TGG + chr3_1:4327052-4327071 None:intergenic 45.0%
! CAAGGACTTTCACCCCATTT+TGG + chr3_1:4327058-4327077 None:intergenic 45.0%
GACACTAAGGAAGAATGAGG+AGG - chr3_1:4327087-4327106 Msa0345210:intron 45.0%
CGAACCTCAGTCATCCATGA+AGG - chr3_1:4325326-4325345 Msa0345210:CDS 50.0%
GGTTCCTTCATGGATGACTG+AGG + chr3_1:4325333-4325352 None:intergenic 50.0%
! AATATTGAGAGCACGGAGGG+AGG + chr3_1:4325402-4325421 None:intergenic 50.0%
TAGATTGCGGTCGCTGATCT+AGG + chr3_1:4325618-4325637 None:intergenic 50.0%
TAGATCAGCGACCGCAATCT+AGG - chr3_1:4325617-4325636 Msa0345210:CDS 50.0%
! GATGGTGTTTAGGACAGCAC+CGG + chr3_1:4325880-4325899 None:intergenic 50.0%
!! GACGGTGGTTGATGGTGTTT+AGG + chr3_1:4325890-4325909 None:intergenic 50.0%
CATCAACCACCGTCTCAATG+CGG - chr3_1:4325896-4325915 Msa0345210:CDS 50.0%
CTATGTTGGCCGCATTGAGA+CGG + chr3_1:4325908-4325927 None:intergenic 50.0%
!! CTCAGAGTGTCGAAGAATGG+TGG + chr3_1:4325931-4325950 None:intergenic 50.0%
CACCATTCTTCGACACTCTG+AGG - chr3_1:4325929-4325948 Msa0345210:CDS 50.0%
TAAACACTCCCACCGGAATC+CGG - chr3_1:4326078-4326097 Msa0345210:CDS 50.0%
CGAGCTCGAATACGAGCAAA+TGG - chr3_1:4326106-4326125 Msa0345210:CDS 50.0%
CACTACCCATTTCCCAACCA+AGG + chr3_1:4326280-4326299 None:intergenic 50.0%
! TTTTCTCAAGTAGGGACGCC+GGG + chr3_1:4326559-4326578 None:intergenic 50.0%
TGCCACTCACAAACAAGTGC+TGG + chr3_1:4326638-4326657 None:intergenic 50.0%
TCGATGCTTAAAGCGCGACA+AGG - chr3_1:4326692-4326711 Msa0345210:CDS 50.0%
CGATGCTTAAAGCGCGACAA+GGG - chr3_1:4326693-4326712 Msa0345210:CDS 50.0%
GATGCTTAAAGCGCGACAAG+GGG - chr3_1:4326694-4326713 Msa0345210:CDS 50.0%
!! GGGGATGGTTGGTTTAGAAC+TGG - chr3_1:4326872-4326891 Msa0345210:intron 50.0%
GACGAGATAGAGCCATAAGC+TGG + chr3_1:4327339-4327358 None:intergenic 50.0%
GGACTGCTCAACCTACTAAG+TGG + chr3_1:4327579-4327598 None:intergenic 50.0%
!! TTTAGGACAGCACCGGCCAT+AGG + chr3_1:4325873-4325892 None:intergenic 55.0%
CGCATTGAGACGGTGGTTGA+TGG + chr3_1:4325898-4325917 None:intergenic 55.0%
!! CGCCTCAGAGTGTCGAAGAA+TGG + chr3_1:4325934-4325953 None:intergenic 55.0%
ACTTGGGGTGTAGCTGCAAG+AGG - chr3_1:4326353-4326372 Msa0345210:CDS 55.0%
TTTCTCAAGTAGGGACGCCG+GGG + chr3_1:4326558-4326577 None:intergenic 55.0%
GGCCAGCACTTGTTTGTGAG+TGG - chr3_1:4326633-4326652 Msa0345210:CDS 55.0%
GAAGCGACGGCGAAAGCTTT+CGG - chr3_1:4326851-4326870 Msa0345210:CDS 55.0%
AAGCGACGGCGAAAGCTTTC+GGG - chr3_1:4326852-4326871 Msa0345210:CDS 55.0%
CGAAAGCTTTCGGGGATGGT+TGG - chr3_1:4326861-4326880 Msa0345210:intron 55.0%
TGTTGGCCGCATTGAGACGG+TGG + chr3_1:4325905-4325924 None:intergenic 60.0%
CGTATTCGAGCTCGCCTAGC+CGG + chr3_1:4326100-4326119 None:intergenic 60.0%
TGGGGTGTAGCTGCAAGAGG+AGG - chr3_1:4326356-4326375 Msa0345210:CDS 60.0%
TTCTCAAGTAGGGACGCCGG+GGG + chr3_1:4326557-4326576 None:intergenic 60.0%
AGCGACGGCGAAAGCTTTCG+GGG - chr3_1:4326853-4326872 Msa0345210:intron 60.0%
ACGGCGAAAGCTTTCGGGGA+TGG - chr3_1:4326857-4326876 Msa0345210:intron 60.0%
ACTCCCACCGGAATCCGGCT+AGG - chr3_1:4326083-4326102 Msa0345210:CDS 65.0%
TCGCCTAGCCGGATTCCGGT+GGG + chr3_1:4326089-4326108 None:intergenic 65.0%
GAGCTCGCCTAGCCGGATTC+CGG + chr3_1:4326093-4326112 None:intergenic 65.0%
! AACTGGTGGAGCACCACCCC+CGG - chr3_1:4326538-4326557 Msa0345210:CDS 65.0%
AGGAAGCGAGGCGGCGACAC+CGG + chr3_1:4325382-4325401 None:intergenic 70.0%
CACGGAGGGAGGAAGCGAGG+CGG + chr3_1:4325391-4325410 None:intergenic 70.0%
GAGCACGGAGGGAGGAAGCG+AGG + chr3_1:4325394-4325413 None:intergenic 70.0%
CTCGCCTAGCCGGATTCCGG+TGG + chr3_1:4326090-4326109 None:intergenic 70.0%
TCAAGTAGGGACGCCGGGGG+TGG + chr3_1:4326554-4326573 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 4325018 4327669 4325018 ID=Msa0345210;Name=Msa0345210
chr3_1 mRNA 4325018 4327669 4325018 ID=Msa0345210-mRNA-1;Parent=Msa0345210;Name=Msa0345210-mRNA-1;_AED=0.01;_eAED=0.01;_QI=221|1|1|1|1|1|2|306|581
chr3_1 exon 4325018 4326871 4325018 ID=Msa0345210-mRNA-1:exon:1401;Parent=Msa0345210-mRNA-1
chr3_1 exon 4327251 4327669 4327251 ID=Msa0345210-mRNA-1:exon:1400;Parent=Msa0345210-mRNA-1
chr3_1 five_prime_UTR 4327449 4327669 4327449 ID=Msa0345210-mRNA-1:five_prime_utr;Parent=Msa0345210-mRNA-1
chr3_1 CDS 4327251 4327448 4327251 ID=Msa0345210-mRNA-1:cds;Parent=Msa0345210-mRNA-1
chr3_1 CDS 4325324 4326871 4325324 ID=Msa0345210-mRNA-1:cds;Parent=Msa0345210-mRNA-1
chr3_1 three_prime_UTR 4325018 4325323 4325018 ID=Msa0345210-mRNA-1:three_prime_utr;Parent=Msa0345210-mRNA-1
Gene Sequence

>Msa0345210

ATGGATAACCTACCAAAATGTGGAGCAAACTATACCATACTCACTCCTTTAACTTTCTTGATGAGAGCTTCTGCATCTTATGCAAACCGAACCTCAGTCATCCATGAAGGAACCCGTTTCACTTGGTCACAAACTTATGACCGGTGTCGCCGCCTCGCTTCCTCCCTCCGTGCTCTCAATATTGCAAAGAATGATGTTGTATCAGTTTTGGCACCAAACATTCCAGCAATGTATGAGATGCATTTTGCAGTACCTATGGCCGGTGCTGTCCTAAACACCATCAACCACCGTCTCAATGCGGCCAACATAGCCACCATTCTTCGACACTCTGAGGCGAAAGTCTTCTTCGTAGACTACGAATTCGTATCAAAAGCAAAAGAGGCCTTAAGATTACTCATGGAAGAAAAAGATCAAAAAGAACAATACTCATCACTCCCACTAGTGATTGTGATAGATGACATAAACACTCCCACCGGAATCCGGCTAGGCGAGCTCGAATACGAGCAAATGGTTCATCATGGTAATCCAAATTACCTTCCTGAAGAAATTCAAGATGAATGGTCACCAATTACATTGAATTACACATCAGGTACAACTTCAGAACCAAAAGGTGTTGTTTATAGTCATAGAGGAGCTTATTTAAGTACTTTGAGTTTAATCCTTGGTTGGGAAATGGGTAGTGAACCAGTTTATCTATGGACATTACCTATGTTCCATTGTAATGGTTGGACATTCACTTGGGGTGTAGCTGCAAGAGGAGGTACTAATATTTGTATCAGAAACACTGCAGCATCTGATATATATAGAGCCATAAATCTCTATAATGTGACACACATGTGTTGCGCACCCATCATTTTCAATATTATTTTAGGCGCGAAACCAAGCGAAAAGAGAGTCATAAAATCTCCGGTGAATATACTAACTGGTGGAGCACCACCCCCGGCGTCCCTACTTGAGAAAATCGAGCCACTTGGTTTTAATGTAACACATGCTTATGGACTAACTGAAGCAACAGGGCCAGCACTTGTTTGTGAGTGGCAGAAGAAATGGAATGTGTTACCGAAAAGAGAGCAATCGATGCTTAAAGCGCGACAAGGGGTTAGTGTTTTGACACTTGCTGATGTTGATGTGAAGAATCTTGAAACAATGGAGAGTGTGGTAAGAGATGGGAAAACAATGGGGGAGATTATGTTGAAGGGAAGTGGAATCATGATGGGGTATTTTAAAGATAAAGAAGCGACGGCGAAAGCTTTCGGGGATGGTTGGTTTAGAACTGGTGATGTTGGTGTTATACATAAAGATGGTTATTTGGAAATTAAAGATAGGTCTAAAGATGTGATTATTTCAGGAGGTGAAAATATTAGTAGTGTTGAAGTTGAAAATGTTCTTTATAGTCATCCTAAGGTTTTAGAAGCTGCTGTGGTTGCAATGCCACATCCAAAATGGGGTGAAAGTCCTTGTGCTTTTGTGACACTAAGGAAGAATGAGGAGGAAAAAAGTGATTCTTGTTGTGTTACTGAGGATGAGATAATTACCTATTGTAGGAAGAATTTACCACACTTTATGGTACCTAAGATGGTTGTTTTTATGGAGGATTTACCAAAGACTTTAACAGGTAAGATTCAGAAATTTGAATTAAGAGCCAAAGCTAAGTGTTTTGTGGTAAATGATGAGAAGAATAAGAAGAAGCCTAATAATCAAGTCAATCATAATAATGACCAGCTTATGGCTCTATCTCGTCTTTGA
Protein sequence

>Msa0345210

MDNLPKCGANYTILTPLTFLMRASASYANRTSVIHEGTRFTWSQTYDRCRRLASSLRALNIAKNDVVSVLAPNIPAMYEMHFAVPMAGAVLNTINHRLNAANIATILRHSEAKVFFVDYEFVSKAKEALRLLMEEKDQKEQYSSLPLVIVIDDINTPTGIRLGELEYEQMVHHGNPNYLPEEIQDEWSPITLNYTSGTTSEPKGVVYSHRGAYLSTLSLILGWEMGSEPVYLWTLPMFHCNGWTFTWGVAARGGTNICIRNTAASDIYRAINLYNVTHMCCAPIIFNIILGAKPSEKRVIKSPVNILTGGAPPPASLLEKIEPLGFNVTHAYGLTEATGPALVCEWQKKWNVLPKREQSMLKARQGVSVLTLADVDVKNLETMESVVRDGKTMGEIMLKGSGIMMGYFKDKEATAKAFGDGWFRTGDVGVIHKDGYLEIKDRSKDVIISGGENISSVEVENVLYSHPKVLEAAVVAMPHPKWGESPCAFVTLRKNEEEKSDSCCVTEDEIITYCRKNLPHFMVPKMVVFMEDLPKTLTGKIQKFELRAKAKCFVVNDEKNKKKPNNQVNHNNDQLMALSRL*