AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1215770


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1215770 MtrunA17_Chr4g0064961 96.795 468 15 0 1 468 1 468 0.0 938
Msa1215770 MtrunA17_Chr1g0149571 60.045 443 136 7 62 463 43 485 0.0 517
Msa1215770 MtrunA17_Chr3g0137381 64.507 355 121 4 113 464 14 366 6.69e-161 459
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1215770 AT4G32060.1 62.222 405 129 5 64 445 67 470 1.54e-174 499
Msa1215770 AT4G32060.2 62.331 369 115 5 64 409 67 434 6.31e-154 445

Find 106 sgRNAs with CRISPR-Local

Find 193 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCAGTTATGGAAAAGTTAA+TGG 0.221348 8_1:-77106263 Msa1215770:CDS
CCTTTCATCACCACCATTTC+CGG 0.227693 8_1:+77108344 None:intergenic
GTGTTAATGCTTGTAATATT+AGG 0.241414 8_1:-77105597 Msa1215770:three_prime_UTR
TTGGGACCACCTTAGGCTTT+TGG 0.283646 8_1:-77108269 Msa1215770:CDS
GAAGACATTTCCTCACGTTT+TGG 0.303320 8_1:-77105977 Msa1215770:CDS
CAATGTAATGTAACTTGTTT+AGG 0.310605 8_1:+77108560 None:intergenic
AGAAGGGTGGTATATGCATT+TGG 0.312703 8_1:-77105865 Msa1215770:three_prime_UTR
TGCAAAATCCTTGGCCGAAA+TGG 0.315325 8_1:+77106451 None:intergenic
CCCTATCTTGAATCTGCATT+TGG 0.315756 8_1:+77105817 None:intergenic
TAGTTTCTGAGAGGTGAAAA+TGG 0.330278 8_1:+77105890 None:intergenic
TTAAGAGGGGAACAGTTTCC+CGG 0.335893 8_1:-77107355 Msa1215770:CDS
GCCACTGAAAAGCTGGATTC+TGG 0.336535 8_1:+77107101 None:intergenic
GAAGGGTGGTATATGCATTT+GGG 0.347349 8_1:-77105864 Msa1215770:three_prime_UTR
GTGAAAACACCGATAGAAAA+TGG 0.353884 8_1:-77106831 Msa1215770:CDS
TTTCTTAGGACAATAACTTC+TGG 0.357278 8_1:-77108303 Msa1215770:CDS
TGGTCATCTTTATCTTCTCC+TGG 0.361095 8_1:-77108243 Msa1215770:CDS
AAATCCAAGTTTCTCTTCAA+TGG 0.378137 8_1:-77108150 Msa1215770:intron
TTCTTAGGACAATAACTTCT+GGG 0.389196 8_1:-77108302 Msa1215770:CDS
CTTCTGGGACTGTGGTTGTT+GGG 0.392623 8_1:-77108287 Msa1215770:CDS
ACCAAATGCAGATTCAAGAT+AGG 0.395746 8_1:-77105818 Msa1215770:three_prime_UTR
GTGGTTGTTGGGACCACCTT+AGG 0.398220 8_1:-77108276 Msa1215770:CDS
TTCATAACTAATCTAGTCAT+TGG 0.400768 8_1:+77105569 None:intergenic
GTTAGAGAAGGTTCTTTAAG+AGG 0.402225 8_1:-77107370 Msa1215770:CDS
CAATAAAAGAGGAACCATTT+CGG 0.419212 8_1:-77106465 Msa1215770:CDS
TTTAAAAGCCACTGAAAAGC+TGG 0.420902 8_1:+77107094 None:intergenic
GATAGAAAATGGCGGTCTCT+TGG 0.430949 8_1:-77106820 Msa1215770:CDS
TCTCTGGCCATATTCAGTTA+TGG 0.434138 8_1:-77106275 Msa1215770:CDS
TGGAAAAGTTAATGGAGTAT+TGG 0.435781 8_1:-77106255 Msa1215770:CDS
TGTTTGATATTGACAGTAAC+GGG 0.436083 8_1:-77107070 Msa1215770:intron
ATGTAACTTGTTTAGGTTGA+AGG 0.436891 8_1:+77108567 None:intergenic
ACATAAACAAACTGCTGGAT+AGG 0.437978 8_1:-77106397 Msa1215770:CDS
TAGCATAATCAGAGAAAGAA+TGG 0.443313 8_1:+77108205 None:intergenic
CTCTTTGACACAAATAATGA+TGG 0.456116 8_1:-77107298 Msa1215770:CDS
TAATCACATAAACAAACTGC+TGG 0.470159 8_1:-77106402 Msa1215770:CDS
TTGCAAATCTACATTGCTAC+AGG 0.472197 8_1:+77105774 None:intergenic
ACTTCTGGGACTGTGGTTGT+TGG 0.473411 8_1:-77108288 Msa1215770:CDS
CAGATTCAAGATAGGGAAGC+AGG 0.473492 8_1:-77105810 Msa1215770:three_prime_UTR
CAAGGATAGTGCAAAATCCT+TGG 0.474280 8_1:+77106442 None:intergenic
GATTCAGAAGGAGGAAATAC+AGG 0.475894 8_1:+77107400 None:intergenic
CCGGAAATGGTGGTGATGAA+AGG 0.477987 8_1:-77108344 Msa1215770:CDS
AGACAAAAGAATTACGTTTG+AGG 0.485400 8_1:-77106342 Msa1215770:CDS
TCGAGTACTTTGCATCGAAT+CGG 0.486747 8_1:-77107477 Msa1215770:CDS
AAGAGGAACCATTTCGGCCA+AGG 0.487222 8_1:-77106459 Msa1215770:CDS
CACTATGATCACAATAAAAG+AGG 0.488832 8_1:-77106476 Msa1215770:CDS
GTTACCATTGAAGAGAAACT+TGG 0.490627 8_1:+77108146 None:intergenic
CTTGCAAAGTCCTCCAGAAA+AGG 0.491838 8_1:-77107608 Msa1215770:intron
TGTTGGTTGAACTGTGTAAA+GGG 0.494222 8_1:-77105935 Msa1215770:CDS
ACCTCTCAGAAACTAAAAGA+AGG 0.495468 8_1:-77105882 Msa1215770:three_prime_UTR
TTTAGACATGAATTCATATG+TGG 0.498327 8_1:+77105493 None:intergenic
GAAGTTGCAGTCCTTCTCTC+TGG 0.500761 8_1:-77106291 Msa1215770:CDS
GACAATAACTTCTGGGACTG+TGG 0.505115 8_1:-77108295 Msa1215770:CDS
TTAGAGAAGGTTCTTTAAGA+GGG 0.506873 8_1:-77107369 Msa1215770:CDS
TGTTATGTCGTAGAGTCTGT+TGG 0.508095 8_1:+77108439 None:intergenic
ATGACGTGGTGCGTTGTGAT+TGG 0.519972 8_1:+77108400 None:intergenic
AAGAGAAGAAAACGTTTGAG+AGG 0.527446 8_1:+77108608 None:intergenic
CACAGAGACGGACGACGCCT+CGG 0.527556 8_1:-77106855 Msa1215770:CDS
AGGTTGAAGGTAGAAATTTG+AGG 0.528830 8_1:+77108580 None:intergenic
CGGAAATGGTGGTGATGAAA+GGG 0.529236 8_1:-77108343 Msa1215770:CDS
GTCTTTGATGCTAACCGTGA+TGG 0.529666 8_1:-77106043 Msa1215770:CDS
TTGGGAATTTGATAACATGT+TGG 0.531352 8_1:-77105952 Msa1215770:CDS
CCAAATGCAGATTCAAGATA+GGG 0.535702 8_1:-77105817 Msa1215770:three_prime_UTR
TTTGCATCGAATCGGATCCC+TGG 0.540228 8_1:-77107469 Msa1215770:CDS
CCCAAGAAAACAACATGCTA+AGG 0.544582 8_1:+77108472 None:intergenic
AGACTCTACGACATAACATA+AGG 0.546354 8_1:-77108434 Msa1215770:CDS
ATGTTTGATATTGACAGTAA+CGG 0.548784 8_1:-77107071 Msa1215770:CDS
ATGGCACGCATCAAATCTGC+AGG 0.550914 8_1:+77107427 None:intergenic
GGATCGCATTCTAACGAGCC+GGG 0.556208 8_1:+77107337 None:intergenic
CATAAACAAACTGCTGGATA+GGG 0.559819 8_1:-77106396 Msa1215770:CDS
AGACAGAAGCCATGTCATCA+TGG 0.565536 8_1:+77105738 None:intergenic
AGGATCGCATTCTAACGAGC+CGG 0.567310 8_1:+77107336 None:intergenic
TTTCTCTGATTATGCTACTG+AGG 0.570594 8_1:-77108199 Msa1215770:CDS
ATATTACAAGCATTAACACT+AGG 0.580632 8_1:+77105601 None:intergenic
TGGAAAGAGTTATTAGCACC+AGG 0.582088 8_1:+77108225 None:intergenic
GAATCAAGACGTGTTAGAGA+AGG 0.583261 8_1:-77107382 Msa1215770:CDS
AGAGAAGAAAACGTTTGAGA+GGG 0.585027 8_1:+77108609 None:intergenic
ATGTTGGTTGAACTGTGTAA+AGG 0.593116 8_1:-77105936 Msa1215770:CDS
ACTGAATATGGCCAGAGAGA+AGG 0.593953 8_1:+77106280 None:intergenic
CCTCTCAGAAACTAAAAGAA+GGG 0.603062 8_1:-77105881 Msa1215770:three_prime_UTR
GAATCGGATCCCTGGTGGCG+AGG 0.604717 8_1:-77107461 Msa1215770:CDS
GGAAGAATTCAAGAAAGTGA+TGG 0.607415 8_1:-77106913 Msa1215770:CDS
CAAGGGGCTAACCACAGAGA+CGG 0.611869 8_1:-77106867 Msa1215770:CDS
TGCGATCTCAAAACAGACAA+GGG 0.611915 8_1:-77106884 Msa1215770:CDS
TGACCAATACCAAAAGCCTA+AGG 0.612300 8_1:+77108260 None:intergenic
TAGAGAAGGTTCTTTAAGAG+GGG 0.613134 8_1:-77107368 Msa1215770:CDS
ACACGTCTTGATTCAGAAGG+AGG 0.614124 8_1:+77107391 None:intergenic
CTAACACGTCTTGATTCAGA+AGG 0.614135 8_1:+77107388 None:intergenic
TCTTTGATGCTAACCGTGAT+GGG 0.618328 8_1:-77106042 Msa1215770:CDS
TGTCAACAGGGAAATAGACA+TGG 0.623190 8_1:-77106934 Msa1215770:intron
CTCAGAAACTAAAAGAAGGG+TGG 0.628738 8_1:-77105878 Msa1215770:three_prime_UTR
AGGAGGAAATACAGGAACAA+TGG 0.629403 8_1:+77107408 None:intergenic
CGGAGAAGAAGACGATGACG+TGG 0.631999 8_1:+77108386 None:intergenic
TTTGATGGGTCCGGAAATGG+TGG 0.634496 8_1:-77108354 Msa1215770:CDS
CTTAAGACAACTGCATGATG+AGG 0.635950 8_1:-77106739 Msa1215770:intron
ATGCGATCTCAAAACAGACA+AGG 0.640169 8_1:-77106885 Msa1215770:CDS
TATTACAAGCATTAACACTA+GGG 0.642244 8_1:+77105602 None:intergenic
ATTCCCAAATCCAAAACGTG+AGG 0.644135 8_1:+77105967 None:intergenic
ACTATCAAACCATGATGACA+TGG 0.647117 8_1:-77105747 Msa1215770:three_prime_UTR
AATGTCTGCAGATGCAACCA+AGG 0.647906 8_1:+77106424 None:intergenic
GCATCGAATCGGATCCCTGG+TGG 0.649676 8_1:-77107466 Msa1215770:CDS
CGTTGTGATTGGCTACACAA+CGG 0.666146 8_1:+77108411 None:intergenic
TTGCACTTAAGCTCCCATCA+CGG 0.666778 8_1:+77106029 None:intergenic
TGTAATGTCATGTAGGTATG+CGG 0.675183 8_1:-77106106 Msa1215770:intron
GACCCATCAAAAGAGCTCAA+CGG 0.680319 8_1:+77108366 None:intergenic
CCAATACCAAAAGCCTAAGG+TGG 0.680665 8_1:+77108263 None:intergenic
GCGATCTCAAAACAGACAAG+GGG 0.683071 8_1:-77106883 Msa1215770:CDS
AAAACACCGATAGAAAATGG+CGG 0.745164 8_1:-77106828 Msa1215770:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGTTTAATTGTTAATTTATT+TGG - chr8_1:77106383-77106402 Msa1215770:CDS 10.0%
!!! TTAGTATTAAAATTGCTTTT+TGG - chr8_1:77106095-77106114 Msa1215770:intron 15.0%
!!! TAGTATTAAAATTGCTTTTT+GGG - chr8_1:77106096-77106115 Msa1215770:intron 15.0%
!!! TATCAATTTAAAGCTAATTT+AGG + chr8_1:77106153-77106172 None:intergenic 15.0%
!!! TATTTTTTATAGACAAATGT+TGG - chr8_1:77106297-77106316 Msa1215770:CDS 15.0%
!! AATTGTTAATTTATTTGGTT+TGG - chr8_1:77106388-77106407 Msa1215770:CDS 15.0%
!!! ATAACAAAATATCTTGTTTT+TGG - chr8_1:77106945-77106964 Msa1215770:intron 15.0%
!! TGCATATTATAATTTATTTG+AGG - chr8_1:77107440-77107459 Msa1215770:CDS 15.0%
!!! ATATATTTTTAGGCATAATA+GGG + chr8_1:77107922-77107941 None:intergenic 15.0%
!!! AATATATTTTTAGGCATAAT+AGG + chr8_1:77107923-77107942 None:intergenic 15.0%
!!! ACTACTGTAAATATATTTTT+AGG + chr8_1:77107932-77107951 None:intergenic 15.0%
!! AGATGAATAACTTATTATTA+CGG - chr8_1:77107973-77107992 Msa1215770:intron 15.0%
!! TTTGAATCTGTTACTATATA+TGG - chr8_1:77106022-77106041 Msa1215770:CDS 20.0%
!!! AGTATTAAAATTGCTTTTTG+GGG - chr8_1:77106097-77106116 Msa1215770:intron 20.0%
!! TAATTTAGGAAGAAAACATT+AGG + chr8_1:77106139-77106158 None:intergenic 20.0%
!!! AGCTTTAAATTGATAATCAT+AGG - chr8_1:77106158-77106177 Msa1215770:intron 20.0%
!!! AATTGATAATCATAGGTTTT+TGG - chr8_1:77106165-77106184 Msa1215770:intron 20.0%
!!! ATATCTTTATGTTTCTGTTT+TGG - chr8_1:77106425-77106444 Msa1215770:CDS 20.0%
!! TGTCATATTAAAACATTCAA+TGG + chr8_1:77106590-77106609 None:intergenic 20.0%
!! AAATTATAATATGCAGATCT+TGG + chr8_1:77107435-77107454 None:intergenic 20.0%
!!! AAAAAACTTTTCAATCTTCA+AGG + chr8_1:77107512-77107531 None:intergenic 20.0%
!!! GAATTTTACAAGATAACTTT+TGG - chr8_1:77107546-77107565 Msa1215770:intron 20.0%
!!! CAATGTAATGTAACTTGTTT+AGG + chr8_1:77105550-77105569 None:intergenic 25.0%
!!! GAGATTTTGAGTATTTTCTT+AGG - chr8_1:77105790-77105809 Msa1215770:three_prime_UTR 25.0%
!!! GTATTAAAATTGCTTTTTGG+GGG - chr8_1:77106098-77106117 Msa1215770:intron 25.0%
! ACACTATTGAATTGAATACT+TGG - chr8_1:77106235-77106254 Msa1215770:CDS 25.0%
! ATTGAATACTTGGAATATGA+AGG - chr8_1:77106245-77106264 Msa1215770:CDS 25.0%
! TTGAATACTTGGAATATGAA+GGG - chr8_1:77106246-77106265 Msa1215770:CDS 25.0%
!! TTTTTATAGACAAATGTTGG+TGG - chr8_1:77106300-77106319 Msa1215770:CDS 25.0%
! AATTAAACTGCAAGAATTCA+TGG + chr8_1:77106372-77106391 None:intergenic 25.0%
!! AAGAGCATAAAAAATTCAGA+AGG + chr8_1:77106794-77106813 None:intergenic 25.0%
! ATGTTTGATATTGACAGTAA+CGG - chr8_1:77107036-77107055 Msa1215770:intron 25.0%
!! ATGCAAACTACATTAAGTTT+TGG - chr8_1:77107103-77107122 Msa1215770:CDS 25.0%
! AATTCCATCAATAAAACTGA+AGG + chr8_1:77107129-77107148 None:intergenic 25.0%
!!! GAGTATTTTTTTGGAAAAGA+TGG - chr8_1:77107309-77107328 Msa1215770:CDS 25.0%
!! TAGTTAGATTCTGTGTTATT+AGG - chr8_1:77107483-77107502 Msa1215770:CDS 25.0%
!! ATTCTTTTGTCTCTTATATG+TGG + chr8_1:77107757-77107776 None:intergenic 25.0%
!! AACTTTTCCATAACTGAATA+TGG + chr8_1:77107842-77107861 None:intergenic 25.0%
! TTCAGTTATGGAAAAGTTAA+TGG - chr8_1:77107844-77107863 Msa1215770:intron 25.0%
!!! TCTTAGCTTTTGTTTCTATT+TGG - chr8_1:77108472-77108491 Msa1215770:exon 25.0%
! TATTACAAGCATTAACACTA+GGG + chr8_1:77108508-77108527 None:intergenic 25.0%
! ATATTACAAGCATTAACACT+AGG + chr8_1:77108509-77108528 None:intergenic 25.0%
! GTGTTAATGCTTGTAATATT+AGG - chr8_1:77108510-77108529 Msa1215770:five_prime_UTR 25.0%
! TTCATAACTAATCTAGTCAT+TGG + chr8_1:77108541-77108560 None:intergenic 25.0%
! TTTAGACATGAATTCATATG+TGG + chr8_1:77108617-77108636 None:intergenic 25.0%
!! ATGTAACTTGTTTAGGTTGA+AGG + chr8_1:77105543-77105562 None:intergenic 30.0%
TTTCTTAGGACAATAACTTC+TGG - chr8_1:77105804-77105823 Msa1215770:three_prime_UTR 30.0%
TTCTTAGGACAATAACTTCT+GGG - chr8_1:77105805-77105824 Msa1215770:three_prime_UTR 30.0%
TAGCATAATCAGAGAAAGAA+TGG + chr8_1:77105905-77105924 None:intergenic 30.0%
AAATCCAAGTTTCTCTTCAA+TGG - chr8_1:77105957-77105976 Msa1215770:CDS 30.0%
TGCAACTTCATCAATTTCAT+GGG + chr8_1:77106061-77106080 None:intergenic 30.0%
TTGCAACTTCATCAATTTCA+TGG + chr8_1:77106062-77106081 None:intergenic 30.0%
! ACAAGATTGATTACCTTTTC+TGG + chr8_1:77106515-77106534 None:intergenic 30.0%
ATTCAATGGTAACAATTTGC+TGG + chr8_1:77106576-77106595 None:intergenic 30.0%
! TTAGAGAAGGTTCTTTAAGA+GGG - chr8_1:77106738-77106757 Msa1215770:intron 30.0%
CTCTTTGACACAAATAATGA+TGG - chr8_1:77106809-77106828 Msa1215770:CDS 30.0%
TCATATTTCTCATGACAAAC+AGG + chr8_1:77106887-77106906 None:intergenic 30.0%
!!! ATATCTTGTTTTTGGATACC+AGG - chr8_1:77106953-77106972 Msa1215770:intron 30.0%
AGTGACAAAAAATATGTACC+TGG + chr8_1:77106974-77106993 None:intergenic 30.0%
TGTTTGATATTGACAGTAAC+GGG - chr8_1:77107037-77107056 Msa1215770:intron 30.0%
!! TTGTTTGTTGTATTGTCAAC+AGG - chr8_1:77107160-77107179 Msa1215770:intron 30.0%
!! TGTTTGTTGTATTGTCAACA+GGG - chr8_1:77107161-77107180 Msa1215770:intron 30.0%
CACTATGATCACAATAAAAG+AGG - chr8_1:77107631-77107650 Msa1215770:CDS 30.0%
CAATAAAAGAGGAACCATTT+CGG - chr8_1:77107642-77107661 Msa1215770:CDS 30.0%
TAATCACATAAACAAACTGC+TGG - chr8_1:77107705-77107724 Msa1215770:intron 30.0%
AGACAAAAGAATTACGTTTG+AGG - chr8_1:77107765-77107784 Msa1215770:intron 30.0%
TGGAAAAGTTAATGGAGTAT+TGG - chr8_1:77107852-77107871 Msa1215770:intron 30.0%
! TTGGGAATTTGATAACATGT+TGG - chr8_1:77108155-77108174 Msa1215770:CDS 30.0%
AGAGAAGAAAACGTTTGAGA+GGG + chr8_1:77105501-77105520 None:intergenic 35.0%
AAGAGAAGAAAACGTTTGAG+AGG + chr8_1:77105502-77105521 None:intergenic 35.0%
AGGTTGAAGGTAGAAATTTG+AGG + chr8_1:77105530-77105549 None:intergenic 35.0%
!!! ACCTTAGCATGTTGTTTTCT+TGG - chr8_1:77105634-77105653 Msa1215770:three_prime_UTR 35.0%
!!! CCTTAGCATGTTGTTTTCTT+GGG - chr8_1:77105635-77105654 Msa1215770:three_prime_UTR 35.0%
!!! CTTAGCATGTTGTTTTCTTG+GGG - chr8_1:77105636-77105655 Msa1215770:three_prime_UTR 35.0%
AGACTCTACGACATAACATA+AGG - chr8_1:77105673-77105692 Msa1215770:three_prime_UTR 35.0%
TTTCTCTGATTATGCTACTG+AGG - chr8_1:77105908-77105927 Msa1215770:exon 35.0%
GTTACCATTGAAGAGAAACT+TGG + chr8_1:77105964-77105983 None:intergenic 35.0%
! TTGGAATATGAAGGGTATGA+TGG - chr8_1:77106254-77106273 Msa1215770:CDS 35.0%
!! TGTTGGTGGTTAATGTGTTA+AGG - chr8_1:77106314-77106333 Msa1215770:CDS 35.0%
! AGATTGATTACCTTTTCTGG+AGG + chr8_1:77106512-77106531 None:intergenic 35.0%
GTTAGAGAAGGTTCTTTAAG+AGG - chr8_1:77106737-77106756 Msa1215770:intron 35.0%
! TAGAGAAGGTTCTTTAAGAG+GGG - chr8_1:77106739-77106758 Msa1215770:intron 35.0%
!!! TGATGGACTCATTTCTTTTG+CGG - chr8_1:77106826-77106845 Msa1215770:CDS 35.0%
TTTAAAAGCCACTGAAAAGC+TGG + chr8_1:77107016-77107035 None:intergenic 35.0%
TAACTTCTGACATTCACGAA+AGG + chr8_1:77107080-77107099 None:intergenic 35.0%
!!! TTGGCCTTCAGTTTTATTGA+TGG - chr8_1:77107122-77107141 Msa1215770:CDS 35.0%
GGAAGAATTCAAGAAAGTGA+TGG - chr8_1:77107194-77107213 Msa1215770:intron 35.0%
GTGAAAACACCGATAGAAAA+TGG - chr8_1:77107276-77107295 Msa1215770:intron 35.0%
AAAACACCGATAGAAAATGG+CGG - chr8_1:77107279-77107298 Msa1215770:intron 35.0%
!!! GGTCTCTTGGAGTATTTTTT+TGG - chr8_1:77107300-77107319 Msa1215770:CDS 35.0%
ACATAAACAAACTGCTGGAT+AGG - chr8_1:77107710-77107729 Msa1215770:intron 35.0%
CATAAACAAACTGCTGGATA+GGG - chr8_1:77107711-77107730 Msa1215770:intron 35.0%
GGTATCATGTAATGTCATGT+AGG - chr8_1:77107994-77108013 Msa1215770:intron 35.0%
TGTAATGTCATGTAGGTATG+CGG - chr8_1:77108001-77108020 Msa1215770:intron 35.0%
!! ATTTCCTCACGTTTTGGATT+TGG - chr8_1:77108136-77108155 Msa1215770:intron 35.0%
!! TTTCCTCACGTTTTGGATTT+GGG - chr8_1:77108137-77108156 Msa1215770:intron 35.0%
! ATGTTGGTTGAACTGTGTAA+AGG - chr8_1:77108171-77108190 Msa1215770:CDS 35.0%
! TGTTGGTTGAACTGTGTAAA+GGG - chr8_1:77108172-77108191 Msa1215770:CDS 35.0%
! TAGTTTCTGAGAGGTGAAAA+TGG + chr8_1:77108220-77108239 None:intergenic 35.0%
ACCTCTCAGAAACTAAAAGA+AGG - chr8_1:77108225-77108244 Msa1215770:CDS 35.0%
CCTCTCAGAAACTAAAAGAA+GGG - chr8_1:77108226-77108245 Msa1215770:CDS 35.0%
!! GCATTTGGGTTTTACAGTAA+TGG - chr8_1:77108257-77108276 Msa1215770:CDS 35.0%
ACCAAATGCAGATTCAAGAT+AGG - chr8_1:77108289-77108308 Msa1215770:CDS 35.0%
CCAAATGCAGATTCAAGATA+GGG - chr8_1:77108290-77108309 Msa1215770:CDS 35.0%
TTGCAAATCTACATTGCTAC+AGG + chr8_1:77108336-77108355 None:intergenic 35.0%
ACTATCAAACCATGATGACA+TGG - chr8_1:77108360-77108379 Msa1215770:CDS 35.0%
CCCAAGAAAACAACATGCTA+AGG + chr8_1:77105638-77105657 None:intergenic 40.0%
TGTTATGTCGTAGAGTCTGT+TGG + chr8_1:77105671-77105690 None:intergenic 40.0%
TGACCAATACCAAAAGCCTA+AGG + chr8_1:77105850-77105869 None:intergenic 40.0%
TGGTCATCTTTATCTTCTCC+TGG - chr8_1:77105864-77105883 Msa1215770:three_prime_UTR 40.0%
TGGAAAGAGTTATTAGCACC+AGG + chr8_1:77105885-77105904 None:intergenic 40.0%
!! GATAGACTTGCTAGCTTCTT+AGG - chr8_1:77106195-77106214 Msa1215770:intron 40.0%
! TTGCTAGCTTCTTAGGACTT+AGG - chr8_1:77106202-77106221 Msa1215770:intron 40.0%
! TGCTAGCTTCTTAGGACTTA+GGG - chr8_1:77106203-77106222 Msa1215770:intron 40.0%
! ATGAAGGGTATGATGGAAGT+AGG - chr8_1:77106261-77106280 Msa1215770:CDS 40.0%
! ATGACACCTTGTTTGATTCC+AGG - chr8_1:77106604-77106623 Msa1215770:intron 40.0%
CGAAAACCTGGAATCAAACA+AGG + chr8_1:77106613-77106632 None:intergenic 40.0%
! ATGCAAAGTACTCGAAAACC+TGG + chr8_1:77106625-77106644 None:intergenic 40.0%
TCGAGTACTTTGCATCGAAT+CGG - chr8_1:77106630-77106649 Msa1215770:intron 40.0%
AGGAGGAAATACAGGAACAA+TGG + chr8_1:77106702-77106721 None:intergenic 40.0%
GATTCAGAAGGAGGAAATAC+AGG + chr8_1:77106710-77106729 None:intergenic 40.0%
CTAACACGTCTTGATTCAGA+AGG + chr8_1:77106722-77106741 None:intergenic 40.0%
GAATCAAGACGTGTTAGAGA+AGG - chr8_1:77106725-77106744 Msa1215770:intron 40.0%
TCTGACATTCACGAAAGGAA+AGG + chr8_1:77107075-77107094 None:intergenic 40.0%
TGTCAACAGGGAAATAGACA+TGG - chr8_1:77107173-77107192 Msa1215770:intron 40.0%
ATGCGATCTCAAAACAGACA+AGG - chr8_1:77107222-77107241 Msa1215770:intron 40.0%
TGCGATCTCAAAACAGACAA+GGG - chr8_1:77107223-77107242 Msa1215770:intron 40.0%
!! AAGAGACCGCCATTTTCTAT+CGG + chr8_1:77107288-77107307 None:intergenic 40.0%
CTTAAGACAACTGCATGATG+AGG - chr8_1:77107368-77107387 Msa1215770:CDS 40.0%
CAAGGATAGTGCAAAATCCT+TGG + chr8_1:77107668-77107687 None:intergenic 40.0%
! CAAGGATTTTGCACTATCCT+TGG - chr8_1:77107666-77107685 Msa1215770:intron 40.0%
! TGAGGAGTTCAAAGCTTTTG+CGG - chr8_1:77107783-77107802 Msa1215770:intron 40.0%
TCTCTGGCCATATTCAGTTA+TGG - chr8_1:77107832-77107851 Msa1215770:intron 40.0%
! TTTTCAAAGAGCAGCATCTC+AGG - chr8_1:77107885-77107904 Msa1215770:intron 40.0%
TCTTTGATGCTAACCGTGAT+GGG - chr8_1:77108065-77108084 Msa1215770:intron 40.0%
! GAAGACATTTCCTCACGTTT+TGG - chr8_1:77108130-77108149 Msa1215770:intron 40.0%
ATTCCCAAATCCAAAACGTG+AGG + chr8_1:77108143-77108162 None:intergenic 40.0%
!!! CCCTTCTTTTAGTTTCTGAG+AGG + chr8_1:77108229-77108248 None:intergenic 40.0%
CTCAGAAACTAAAAGAAGGG+TGG - chr8_1:77108229-77108248 Msa1215770:CDS 40.0%
AGAAGGGTGGTATATGCATT+TGG - chr8_1:77108242-77108261 Msa1215770:CDS 40.0%
GAAGGGTGGTATATGCATTT+GGG - chr8_1:77108243-77108262 Msa1215770:CDS 40.0%
CCCTATCTTGAATCTGCATT+TGG + chr8_1:77108293-77108312 None:intergenic 40.0%
! CGTTGTGATTGGCTACACAA+CGG + chr8_1:77105699-77105718 None:intergenic 45.0%
! TCTCCGTTGAGCTCTTTTGA+TGG - chr8_1:77105738-77105757 Msa1215770:three_prime_UTR 45.0%
! CTCCGTTGAGCTCTTTTGAT+GGG - chr8_1:77105739-77105758 Msa1215770:three_prime_UTR 45.0%
GACCCATCAAAAGAGCTCAA+CGG + chr8_1:77105744-77105763 None:intergenic 45.0%
!! TTGAGCTCTTTTGATGGGTC+CGG - chr8_1:77105744-77105763 Msa1215770:three_prime_UTR 45.0%
!! TCTTTTGATGGGTCCGGAAA+TGG - chr8_1:77105750-77105769 Msa1215770:three_prime_UTR 45.0%
CCTTTCATCACCACCATTTC+CGG + chr8_1:77105766-77105785 None:intergenic 45.0%
! CGGAAATGGTGGTGATGAAA+GGG - chr8_1:77105764-77105783 Msa1215770:three_prime_UTR 45.0%
!! GACAATAACTTCTGGGACTG+TGG - chr8_1:77105812-77105831 Msa1215770:three_prime_UTR 45.0%
CCAATACCAAAAGCCTAAGG+TGG + chr8_1:77105847-77105866 None:intergenic 45.0%
! CCACCTTAGGCTTTTGGTAT+TGG - chr8_1:77105844-77105863 Msa1215770:three_prime_UTR 45.0%
CTTGCAAAGTCCTCCAGAAA+AGG - chr8_1:77106499-77106518 Msa1215770:CDS 45.0%
TCATAAAAACCTCGCCACCA+GGG + chr8_1:77106658-77106677 None:intergenic 45.0%
ACACGTCTTGATTCAGAAGG+AGG + chr8_1:77106719-77106738 None:intergenic 45.0%
TTAAGAGGGGAACAGTTTCC+CGG - chr8_1:77106752-77106771 Msa1215770:CDS 45.0%
! ACCAGAATCCAGCTTTTCAG+TGG - chr8_1:77107005-77107024 Msa1215770:intron 45.0%
CATTCACGAAAGGAAAGGAG+AGG + chr8_1:77107070-77107089 None:intergenic 45.0%
GCGATCTCAAAACAGACAAG+GGG - chr8_1:77107224-77107243 Msa1215770:intron 45.0%
GATAGAAAATGGCGGTCTCT+TGG - chr8_1:77107287-77107306 Msa1215770:CDS 45.0%
AAAGATGCTGCAAGACCATG+AGG + chr8_1:77107411-77107430 None:intergenic 45.0%
TGCAAAATCCTTGGCCGAAA+TGG + chr8_1:77107659-77107678 None:intergenic 45.0%
AATGTCTGCAGATGCAACCA+AGG + chr8_1:77107686-77107705 None:intergenic 45.0%
ACTGAATATGGCCAGAGAGA+AGG + chr8_1:77107830-77107849 None:intergenic 45.0%
GTCTTTGATGCTAACCGTGA+TGG - chr8_1:77108064-77108083 Msa1215770:intron 45.0%
TTGCACTTAAGCTCCCATCA+CGG + chr8_1:77108081-77108100 None:intergenic 45.0%
CAGATTCAAGATAGGGAAGC+AGG - chr8_1:77108297-77108316 Msa1215770:CDS 45.0%
AGACAGAAGCCATGTCATCA+TGG + chr8_1:77108372-77108391 None:intergenic 45.0%
ATGACGTGGTGCGTTGTGAT+TGG + chr8_1:77105710-77105729 None:intergenic 50.0%
! TTTGATGGGTCCGGAAATGG+TGG - chr8_1:77105753-77105772 Msa1215770:three_prime_UTR 50.0%
! CCGGAAATGGTGGTGATGAA+AGG - chr8_1:77105763-77105782 Msa1215770:three_prime_UTR 50.0%
!! ACTTCTGGGACTGTGGTTGT+TGG - chr8_1:77105819-77105838 Msa1215770:three_prime_UTR 50.0%
!! CTTCTGGGACTGTGGTTGTT+GGG - chr8_1:77105820-77105839 Msa1215770:three_prime_UTR 50.0%
! TTGGGACCACCTTAGGCTTT+TGG - chr8_1:77105838-77105857 Msa1215770:three_prime_UTR 50.0%
TTTGCATCGAATCGGATCCC+TGG - chr8_1:77106638-77106657 Msa1215770:intron 50.0%
GTCATAAAAACCTCGCCACC+AGG + chr8_1:77106659-77106678 None:intergenic 50.0%
ATGGCACGCATCAAATCTGC+AGG + chr8_1:77106683-77106702 None:intergenic 50.0%
AGGATCGCATTCTAACGAGC+CGG + chr8_1:77106774-77106793 None:intergenic 50.0%
GCCACTGAAAAGCTGGATTC+TGG + chr8_1:77107009-77107028 None:intergenic 50.0%
!! CTATCGGTGTTTTCACTCCG+AGG + chr8_1:77107272-77107291 None:intergenic 50.0%
TGTGAGCCTCTCAAACCTCA+TGG - chr8_1:77107393-77107412 Msa1215770:CDS 50.0%
GCAAGACCATGAGGTTTGAG+AGG + chr8_1:77107402-77107421 None:intergenic 50.0%
AAGAGGAACCATTTCGGCCA+AGG - chr8_1:77107648-77107667 Msa1215770:CDS 50.0%
GAAGTTGCAGTCCTTCTCTC+TGG - chr8_1:77107816-77107835 Msa1215770:intron 50.0%
CGGAGAAGAAGACGATGACG+TGG + chr8_1:77105724-77105743 None:intergenic 55.0%
GTGGTTGTTGGGACCACCTT+AGG - chr8_1:77105831-77105850 Msa1215770:three_prime_UTR 55.0%
GGATCGCATTCTAACGAGCC+GGG + chr8_1:77106773-77106792 None:intergenic 55.0%
CAAGGGGCTAACCACAGAGA+CGG - chr8_1:77107240-77107259 Msa1215770:intron 55.0%
GCATCGAATCGGATCCCTGG+TGG - chr8_1:77106641-77106660 Msa1215770:intron 60.0%
! GAATCGGATCCCTGGTGGCG+AGG - chr8_1:77106646-77106665 Msa1215770:intron 65.0%
CACAGAGACGGACGACGCCT+CGG - chr8_1:77107252-77107271 Msa1215770:intron 65.0%
!! CGAGGCGTCGTCCGTCTCTG+TGG + chr8_1:77107254-77107273 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 77105493 77108636 77105493 ID=Msa1215770;Name=Msa1215770
chr8_1 mRNA 77105493 77108636 77105493 ID=Msa1215770-mRNA-1;Parent=Msa1215770;Name=Msa1215770-mRNA-1;_AED=0.09;_eAED=0.09;_QI=149|1|1|1|1|1|7|432|468
chr8_1 exon 77105493 77106113 77105493 ID=Msa1215770-mRNA-1:exon:26604;Parent=Msa1215770-mRNA-1
chr8_1 exon 77106223 77106519 77106223 ID=Msa1215770-mRNA-1:exon:26603;Parent=Msa1215770-mRNA-1
chr8_1 exon 77106740 77106947 77106740 ID=Msa1215770-mRNA-1:exon:26602;Parent=Msa1215770-mRNA-1
chr8_1 exon 77107071 77107154 77107071 ID=Msa1215770-mRNA-1:exon:26601;Parent=Msa1215770-mRNA-1
chr8_1 exon 77107280 77107503 77107280 ID=Msa1215770-mRNA-1:exon:26600;Parent=Msa1215770-mRNA-1
chr8_1 exon 77107609 77107676 77107609 ID=Msa1215770-mRNA-1:exon:26599;Parent=Msa1215770-mRNA-1
chr8_1 exon 77108151 77108636 77108151 ID=Msa1215770-mRNA-1:exon:26598;Parent=Msa1215770-mRNA-1
chr8_1 five_prime_UTR 77108488 77108636 77108488 ID=Msa1215770-mRNA-1:five_prime_utr;Parent=Msa1215770-mRNA-1
chr8_1 CDS 77108151 77108487 77108151 ID=Msa1215770-mRNA-1:cds;Parent=Msa1215770-mRNA-1
chr8_1 CDS 77107609 77107676 77107609 ID=Msa1215770-mRNA-1:cds;Parent=Msa1215770-mRNA-1
chr8_1 CDS 77107280 77107503 77107280 ID=Msa1215770-mRNA-1:cds;Parent=Msa1215770-mRNA-1
chr8_1 CDS 77107071 77107154 77107071 ID=Msa1215770-mRNA-1:cds;Parent=Msa1215770-mRNA-1
chr8_1 CDS 77106740 77106947 77106740 ID=Msa1215770-mRNA-1:cds;Parent=Msa1215770-mRNA-1
chr8_1 CDS 77106223 77106519 77106223 ID=Msa1215770-mRNA-1:cds;Parent=Msa1215770-mRNA-1
chr8_1 CDS 77105925 77106113 77105925 ID=Msa1215770-mRNA-1:cds;Parent=Msa1215770-mRNA-1
chr8_1 three_prime_UTR 77105493 77105924 77105493 ID=Msa1215770-mRNA-1:three_prime_utr;Parent=Msa1215770-mRNA-1
Gene Sequence

>Msa1215770

ATGTTGTTTTCTTGGGGAAGAAGATTCCAACAGACTCTACGACATAACATAAGGCCGTTGTGTAGCCAATCACAACGCACCACGTCATCGTCTTCTTCTCCGTTGAGCTCTTTTGATGGGTCCGGAAATGGTGGTGATGAAAGGGTTAGAGATTTTGAGTATTTTCTTAGGACAATAACTTCTGGGACTGTGGTTGTTGGGACCACCTTAGGCTTTTGGTATTGGTCATCTTTATCTTCTCCTGGTGCTAATAACTCTTTCCATTCTTTCTCTGATTATGCTACTGAGGATCAGTTTCAACAAAACTATCAAAATAAATCCAAGTTTCTCTTCAATGATAGTTATCGAAGAAGAGTATTCTTCAACTACGAAAAACGTCTTCGCTTGCAAAGTCCTCCAGAAAAGGTTTTCGAGTACTTTGCATCGAATCGGATCCCTGGTGGCGAGGTTTTTATGACACCTGCAGATTTGATGCGTGCCATTGTTCCTGTATTTCCTCCTTCTGAATCAAGACGTGTTAGAGAAGGTTCTTTAAGAGGGGAACAGTTTCCCGGCTCGTTAGAATGCGATCCTTCTGAATTTTTTATGCTCTTTGACACAAATAATGATGGACTCATTTCTTTTGCGGAGTACATATTTTTTGTCACTCTTCTCAGCATACCAGAATCCAGCTTTTCAGTGGCTTTTAAAATGTTTGATATTGACAGTAACGGGGAAATAGACATGGAAGAATTCAAGAAAGTGATGGCGTTGATGCGATCTCAAAACAGACAAGGGGCTAACCACAGAGACGGACGACGCCTCGGAGTGAAAACACCGATAGAAAATGGCGGTCTCTTGGAGTATTTTTTTGGAAAAGATGGAAAAGATTGCTTACAACATGACAAATTTGTTCAATTCTTAAGACAACTGCATGATGAGATCTTGAGATTAGAATTTTCTCACTATGATCACAATAAAAGAGGAACCATTTCGGCCAAGGATTTTGCACTATCCTTGGTTGCATCTGCAGACATTAATCACATAAACAAACTGCTGGATAGGGTCGACGAATTAGACAATGATCCACATATAAGAGACAAAAGAATTACGTTTGAGGAGTTCAAAGCTTTTGCGGAATTGCGCAAGAAGTTGCAGTCCTTCTCTCTGGCCATATTCAGTTATGGAAAAGTTAATGGAGTATTGGCAAAAAATGATTTTCAAAGAGCAGCATCTCAGGTATGCGGCGTCGATATTACAGAGAATGTACTTGACATAATTTTTCATGTCTTTGATGCTAACCGTGATGGGAGCTTAAGTGCAAGCGAGTTTGTTCGAGTTATACAAAGAAGAGAAGACATTTCCTCACGTTTTGGATTTGGGAATTTGATAACATGTTGGTTGAACTGTGTAAAGGGTAAATGTTAA

Protein sequence

>Msa1215770

MLFSWGRRFQQTLRHNIRPLCSQSQRTTSSSSSPLSSFDGSGNGGDERVRDFEYFLRTITSGTVVVGTTLGFWYWSSLSSPGANNSFHSFSDYATEDQFQQNYQNKSKFLFNDSYRRRVFFNYEKRLRLQSPPEKVFEYFASNRIPGGEVFMTPADLMRAIVPVFPPSESRRVREGSLRGEQFPGSLECDPSEFFMLFDTNNDGLISFAEYIFFVTLLSIPESSFSVAFKMFDIDSNGEIDMEEFKKVMALMRSQNRQGANHRDGRRLGVKTPIENGGLLEYFFGKDGKDCLQHDKFVQFLRQLHDEILRLEFSHYDHNKRGTISAKDFALSLVASADINHINKLLDRVDELDNDPHIRDKRITFEEFKAFAELRKKLQSFSLAIFSYGKVNGVLAKNDFQRAASQVCGVDITENVLDIIFHVFDANRDGSLSASEFVRVIQRREDISSRFGFGNLITCWLNCVKGKC*