AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0460730

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0460730 MtrunA17_Chr3g0109731 98.110 582 10 1 1 581 1 582 0.0 1190
Msa0460730 MtrunA17_Chr8g0370701 50.450 555 259 4 1 553 43 583 0.0 600
Msa0460730 MtrunA17_Chr5g0396311 50.271 553 261 3 1 553 1 539 0.0 588
Msa0460730 MtrunA17_Chr5g0433241 53.286 563 233 8 1 551 1 545 0.0 588
Msa0460730 MtrunA17_Chr4g0068151 51.792 558 254 8 1 551 7 556 0.0 577
Msa0460730 MtrunA17_Chr2g0301671 51.075 558 258 7 1 551 7 556 0.0 572
Msa0460730 MtrunA17_Chr5g0433231 51.792 558 250 6 1 551 1 546 0.0 554
Msa0460730 MtrunA17_Chr5g0396331 47.473 554 269 5 1 551 1 535 0.0 551
Msa0460730 MtrunA17_Chr5g0433221 50.538 558 257 7 1 551 1 546 0.0 543
Msa0460730 MtrunA17_Chr6g0471311 49.468 564 256 7 1 551 1 548 0.0 530
Msa0460730 MtrunA17_Chr8g0370731 49.489 489 231 4 67 553 20 494 6.26e-177 510
Msa0460730 MtrunA17_Chr5g0406681 41.727 556 299 11 3 551 29 566 1.17e-140 419
Msa0460730 MtrunA17_Chr4g0028411 26.460 548 360 12 14 552 27 540 1.08e-45 169
Msa0460730 MtrunA17_Chr5g0395431 28.205 546 342 16 18 549 73 582 1.92e-44 166
Msa0460730 MtrunA17_Chr2g0327341 27.978 554 341 16 14 552 27 537 4.40e-43 162
Msa0460730 MtrunA17_Chr6g0471921 28.804 552 337 15 15 554 5 512 1.75e-41 157
Msa0460730 MtrunA17_Chr1g0157401 26.577 523 336 12 37 546 65 552 3.14e-41 157
Msa0460730 MtrunA17_Chr3g0102411 26.486 555 333 17 19 549 33 536 1.97e-40 154
Msa0460730 MtrunA17_Chr1g0180541 26.825 548 351 16 14 546 28 540 1.65e-39 152
Msa0460730 MtrunA17_Chr4g0039791 26.692 517 318 13 49 547 81 554 1.82e-39 152
Msa0460730 MtrunA17_Chr4g0000461 28.131 551 335 17 25 556 36 544 1.18e-38 149
Msa0460730 MtrunA17_Chr8g0353341 27.216 485 303 13 37 501 62 516 1.40e-38 149
Msa0460730 MtrunA17_Chr4g0072561 26.354 554 341 16 18 549 35 543 2.16e-37 145
Msa0460730 MtrunA17_Chr5g0409791 26.796 515 330 13 49 547 78 561 1.21e-36 144
Msa0460730 MtrunA17_Chr1g0180551 26.079 556 349 16 14 546 97 613 4.34e-36 143
Msa0460730 MtrunA17_Chr5g0409771 26.554 531 325 17 36 547 64 548 1.93e-34 137
Msa0460730 MtrunA17_Chr1g0197391 25.849 530 334 16 43 556 82 568 6.69e-34 135
Msa0460730 MtrunA17_Chr2g0334131 33.448 290 172 8 266 549 5 279 4.00e-32 125
Msa0460730 MtrunA17_Chr3g0116251 27.989 368 223 8 194 546 208 548 5.19e-32 130
Msa0460730 MtrunA17_Chr3g0116271 27.945 365 230 7 194 546 207 550 6.19e-32 130
Msa0460730 MtrunA17_Chr1g0186071 24.470 519 335 9 39 549 82 551 1.81e-31 129
Msa0460730 MtrunA17_Chr2g0292471 24.682 551 346 19 39 547 27 550 1.83e-28 119
Msa0460730 MtrunA17_Chr4g0004101 28.980 245 155 7 306 547 96 324 1.48e-22 99.0
Msa0460730 MtrunA17_Chr4g0004841 29.528 254 146 9 306 547 101 333 2.41e-21 95.5
Msa0460730 MtrunA17_Chr7g0252691 23.660 541 360 18 40 550 206 723 5.46e-20 94.4
Msa0460730 MtrunA17_Chr1g0194371 24.440 491 284 18 41 469 78 543 2.93e-19 91.7
Msa0460730 MtrunA17_Chr8g0388081 23.636 550 297 23 41 508 19 527 1.36e-17 86.3
Msa0460730 MtrunA17_Chr1g0157431 26.667 285 185 7 37 312 65 334 8.68e-15 77.4
Msa0460730 MtrunA17_Chr7g0270221 29.439 214 137 6 259 469 301 503 1.74e-13 73.6
Msa0460730 MtrunA17_Chr5g0396691 21.689 521 291 18 41 480 80 564 2.37e-13 73.2
Msa0460730 MtrunA17_Chr3g0124631 33.000 200 100 8 306 484 426 612 3.77e-13 72.4
Msa0460730 MtrunA17_Chr1g0162621 20.697 488 306 14 40 469 79 543 1.15e-12 70.9
Msa0460730 MtrunA17_Chr1g0160041 32.948 173 94 6 306 469 424 583 8.32e-12 68.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0460730 AT1G65880.1 61.754 570 201 5 1 560 1 563 0.0 713
Msa0460730 AT1G65890.1 60.900 578 213 5 1 570 1 573 0.0 713
Msa0460730 AT1G66120.1 58.864 581 224 4 1 575 1 572 0.0 700
Msa0460730 AT1G68270.1 53.509 570 217 7 1 560 1 532 0.0 582
Msa0460730 AT1G20560.1 50.265 567 264 4 1 563 3 555 0.0 580
Msa0460730 AT3G16910.1 52.330 558 252 8 1 551 9 559 0.0 566
Msa0460730 AT5G16340.1 48.746 558 263 6 1 551 1 542 0.0 558
Msa0460730 AT2G17650.1 49.643 560 262 4 1 550 48 597 0.0 555
Msa0460730 AT1G21530.2 50.364 550 258 7 9 553 9 548 0.0 554
Msa0460730 AT5G16370.1 48.208 558 266 5 1 551 1 542 0.0 552
Msa0460730 AT1G21530.1 50.364 550 256 8 9 553 9 546 0.0 547
Msa0460730 AT1G21540.1 49.639 554 257 8 9 553 9 549 0.0 540
Msa0460730 AT1G75960.1 48.474 557 266 5 1 551 1 542 0.0 532
Msa0460730 AT1G77240.1 46.964 560 274 8 1 553 1 544 0.0 528
Msa0460730 AT1G20560.2 50.102 491 227 4 77 563 1 477 4.76e-172 496
Msa0460730 AT1G76290.1 45.324 556 278 8 1 551 1 535 5.29e-155 456
Msa0460730 AT3G21240.1 28.872 523 328 13 37 549 61 549 2.82e-49 179
Msa0460730 AT4G05160.1 27.076 554 345 14 17 552 30 542 8.15e-45 167
Msa0460730 AT1G20510.1 27.656 546 333 19 18 546 36 536 1.21e-44 167
Msa0460730 AT1G51680.1 29.015 548 338 16 19 549 43 556 3.46e-44 166
Msa0460730 AT1G20500.1 25.046 543 351 14 18 546 42 542 7.40e-43 162
Msa0460730 AT4G19010.1 26.454 533 337 15 31 547 62 555 2.34e-42 160
Msa0460730 AT1G20480.1 27.290 524 329 16 37 546 72 557 2.62e-42 160
Msa0460730 AT3G21230.1 28.463 527 329 12 37 549 71 563 1.57e-41 158
Msa0460730 AT1G65060.1 27.737 548 340 19 18 549 52 559 7.72e-41 156
Msa0460730 AT5G63380.1 26.007 546 327 16 17 546 66 550 2.11e-40 155
Msa0460730 AT5G38120.1 26.972 545 337 17 18 546 43 542 1.51e-38 149
Msa0460730 AT3G48990.1 28.023 521 310 13 40 543 31 503 2.34e-38 148
Msa0460730 AT1G51680.3 28.433 517 319 16 19 518 43 525 4.78e-38 148
Msa0460730 AT3G21240.2 28.444 450 285 12 37 476 61 483 1.98e-37 145
Msa0460730 AT3G21240.3 28.444 450 285 12 37 476 61 483 1.98e-37 145
Msa0460730 AT1G20510.2 28.033 478 283 18 18 475 36 472 9.44e-37 143
Msa0460730 AT5G38120.3 26.886 517 317 17 18 518 43 514 8.62e-34 135
Msa0460730 AT1G30520.2 25.045 555 372 15 20 549 13 548 1.34e-32 132
Msa0460730 AT1G30520.1 25.045 555 372 15 20 549 13 548 1.34e-32 132
Msa0460730 AT1G62940.1 25.893 560 341 16 14 549 26 535 3.12e-32 131
Msa0460730 AT1G51680.2 28.421 475 296 15 19 476 43 490 3.41e-32 130
Msa0460730 AT3G21230.3 27.218 496 313 12 37 518 71 532 1.01e-31 129
Msa0460730 AT1G20510.3 27.778 450 264 18 18 447 36 444 1.98e-30 125
Msa0460730 AT5G38120.4 26.160 474 296 13 18 475 43 478 5.35e-29 120
Msa0460730 AT5G38120.2 26.160 474 296 13 18 475 43 478 5.35e-29 120
Msa0460730 AT3G21230.2 27.313 454 289 11 37 476 71 497 6.82e-27 114
Msa0460730 AT1G65060.2 27.354 446 275 17 18 447 52 464 7.35e-27 114
Msa0460730 AT3G16170.1 25.065 387 241 11 189 547 236 601 3.07e-24 107
Msa0460730 AT1G20490.2 25.971 412 262 15 37 436 61 441 3.70e-23 103
Msa0460730 AT1G20490.1 25.971 412 262 15 37 436 61 441 3.70e-23 103
Msa0460730 AT1G30520.3 23.667 469 320 12 20 471 13 460 3.91e-21 97.1
Msa0460730 AT1G30520.4 23.667 469 320 12 20 471 13 460 3.91e-21 97.1
Msa0460730 AT1G64400.1 25.097 514 285 22 28 472 65 547 5.00e-21 97.8
Msa0460730 AT4G23850.1 24.517 518 280 20 41 480 81 565 2.64e-19 92.4
Msa0460730 AT5G36880.6 23.843 562 369 17 25 550 127 665 1.99e-18 89.7
Msa0460730 AT5G36880.3 23.843 562 369 17 25 550 127 665 1.99e-18 89.7
Msa0460730 AT5G36880.5 23.843 562 369 17 25 550 127 665 1.99e-18 89.7
Msa0460730 AT5G36880.1 23.843 562 369 17 25 550 127 665 1.99e-18 89.7
Msa0460730 AT5G36880.2 23.843 562 369 17 25 550 177 715 2.01e-18 89.7
Msa0460730 AT4G14070.1 21.658 591 321 23 20 501 102 659 6.82e-13 72.0
Msa0460730 AT4G11030.1 31.313 198 108 10 281 472 372 547 2.42e-12 70.5
Msa0460730 AT1G77590.2 32.558 172 96 6 306 469 274 433 1.35e-11 67.8
Msa0460730 AT1G77590.1 32.558 172 96 6 306 469 420 579 1.91e-11 67.4
Msa0460730 AT2G04350.2 30.418 263 138 13 306 551 449 683 6.78e-11 65.9
Msa0460730 AT2G04350.1 30.418 263 138 13 306 551 449 683 6.78e-11 65.9

Find 169 sgRNAs with CRISPR-Local

Find 199 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAGAATTTACCACACTTTA+TGG 0.126746 3_3:+58318144 Msa0460730:CDS
CATGAGGCAAACACAAAATT+TGG 0.134162 3_3:-58318636 None:intergenic
TTATGATTGACTTGATTATT+TGG 0.170990 3_3:-58318289 None:intergenic
TATAACGTGGCCTTCAATTT+TGG 0.172282 3_3:+58316088 Msa0460730:five_prime_UTR
TCTAAAGATGTGATTATTTC+AGG 0.185792 3_3:+58317926 Msa0460730:CDS
CAAGGACTTTCACCCCATTT+TGG 0.195490 3_3:-58318037 None:intergenic
TGTCACATTATAGAGATTTA+TGG 0.205886 3_3:-58317408 None:intergenic
TATACATAAAGATGGTTATT+TGG 0.207931 3_3:+58317889 Msa0460730:CDS
ATTTCTTCAGGAAGGTAATT+TGG 0.214710 3_3:-58317125 None:intergenic
ATCTTACCTGTTAAAGTCTT+TGG 0.233560 3_3:-58318199 None:intergenic
GCTCTCATCAAGAAAGTTAA+AGG 0.239728 3_3:-58316268 None:intergenic
AAGCGACGGCGAAAGCTTTC+GGG 0.254708 3_3:+58317834 Msa0460730:CDS
AAATGACTCAAATTAAATTA+TGG 0.260323 3_3:-58318593 None:intergenic
GTATAGTTTGCTCCACATTT+TGG 0.280265 3_3:-58316235 None:intergenic
TTTAATGTAACACATGCTTA+TGG 0.280910 3_3:+58317575 Msa0460730:CDS
GATTTACCAAAGACTTTAAC+AGG 0.288395 3_3:+58318193 Msa0460730:CDS
CTTCATAGTCACTAAATTAA+TGG 0.289137 3_3:+58316049 Msa0460730:five_prime_UTR
TTGCAATGCCACATCCAAAA+TGG 0.293682 3_3:+58318023 Msa0460730:CDS
AATAAAACAGGTATCAGTTT+TGG 0.306205 3_3:+58316788 Msa0460730:intron
TATAGAAAATTTCATGTGAT+TGG 0.313408 3_3:-58316113 None:intergenic
TGACTATAAACAACACCTTT+TGG 0.314032 3_3:-58317203 None:intergenic
TCATAATAATGACCAGATTA+TGG 0.314754 3_3:+58318306 Msa0460730:CDS
GAAAGTTAAAGGAGTGAGTA+TGG 0.331539 3_3:-58316257 None:intergenic
CATTCATCTTGAATTTCTTC+AGG 0.339619 3_3:-58317137 None:intergenic
GAAGCGACGGCGAAAGCTTT+CGG 0.344503 3_3:+58317833 Msa0460730:CDS
TTTAATCCTTGGTTGGGAAA+TGG 0.345052 3_3:+58317253 Msa0460730:CDS
TGTGGTTAAGAATGAGATTA+GGG 0.348530 3_3:-58316146 None:intergenic
GGTAATGTCCATAGATAAAC+TGG 0.364652 3_3:-58317284 None:intergenic
TTCCTCCATGAGTAATCTTA+AGG 0.365260 3_3:-58316982 None:intergenic
GTTAGTTGTTTCCACTTAGT+AGG 0.368641 3_3:+58318547 Msa0460730:three_prime_UTR
CGCATTGAGACGGTGGTTGA+TGG 0.387285 3_3:-58316877 None:intergenic
TCATACATTGCTGGAATGTT+TGG 0.387598 3_3:-58316813 None:intergenic
TAAAATAATATTGAAAATGA+TGG 0.388005 3_3:-58317447 None:intergenic
GAGCTCTCCTAGCCGGATTC+CGG 0.393162 3_3:-58317072 None:intergenic
AAGTGAAACGGGTTCCTTCA+TGG 0.397922 3_3:-58316324 None:intergenic
TACCACAAAACACTTAGCTT+TGG 0.397967 3_3:-58318242 None:intergenic
TGGTAAATTCTTCCTACAAT+AGG 0.411253 3_3:-58318134 None:intergenic
TATGGACTAACTGAAGCAAC+AGG 0.418017 3_3:+58317593 Msa0460730:CDS
GTAAGAGATGGGAAAACAAT+GGG 0.423096 3_3:+58317758 Msa0460730:CDS
GATGTGTAATTCAATGTAAT+TGG 0.423792 3_3:-58317164 None:intergenic
TTTGAGTTTAATCCTTGGTT+GGG 0.424831 3_3:+58317247 Msa0460730:CDS
TTAATCCTTGGTTGGGAAAT+GGG 0.425386 3_3:+58317254 Msa0460730:CDS
TTTGTGAGTGGCAGAAGAAA+TGG 0.427336 3_3:+58317627 Msa0460730:CDS
TTACCTATGTTCCATTGTAA+TGG 0.427373 3_3:+58317302 Msa0460730:CDS
TCTCCGGTGAATATACTAAC+TGG 0.428686 3_3:+58317503 Msa0460730:CDS
CTTCATGGATGACTGAGGTT+CGG 0.429624 3_3:-58316309 None:intergenic
AAGATTACTCATGGAGGAAA+AGG 0.430613 3_3:+58316986 Msa0460730:CDS
TTGTGGTTAAGAATGAGATT+AGG 0.431591 3_3:-58316147 None:intergenic
AAATGCATCTCATACATTGC+TGG 0.433221 3_3:-58316822 None:intergenic
GTTATTTGGAAATTAAAGAT+AGG 0.433555 3_3:+58317903 Msa0460730:CDS
GACGGTGGTTGATGGTGTTT+AGG 0.435440 3_3:-58316869 None:intergenic
GACGAGATAGAGCCATAATC+TGG 0.444504 3_3:-58318318 None:intergenic
GTAGTGAACCAGTTTATCTA+TGG 0.450766 3_3:+58317276 Msa0460730:CDS
TGCAATGCCACATCCAAAAT+GGG 0.459922 3_3:+58318024 Msa0460730:CDS
GGGGATGGTTGGTTTAGAAC+TGG 0.460142 3_3:+58317854 Msa0460730:CDS
ACACTTTATGGTACCTAAGA+TGG 0.462947 3_3:+58318156 Msa0460730:CDS
GAGATTATGTTGAAGGGAAG+TGG 0.465461 3_3:+58317782 Msa0460730:CDS
AGTTTGTGACCAAGTGAAAC+GGG 0.471117 3_3:-58316335 None:intergenic
CTGAAGAAATTCAAGATGAA+TGG 0.471358 3_3:+58317138 Msa0460730:CDS
ATGGAGAGTGTGGTAAGAGA+TGG 0.472523 3_3:+58317746 Msa0460730:CDS
GAAACAACTAACAAGAAAGT+TGG 0.473458 3_3:-58318536 None:intergenic
TAAACACTCCCACCGGAATC+CGG 0.473541 3_3:+58317060 Msa0460730:CDS
CTATGTTCCATTGTAATGGT+TGG 0.477230 3_3:+58317306 Msa0460730:CDS
CTTTGAGTTTAATCCTTGGT+TGG 0.482972 3_3:+58317246 Msa0460730:CDS
ATTCATATCAAAAGCAAAAG+AGG 0.483472 3_3:+58316959 Msa0460730:CDS
CGAAAGCTTTCGGGGATGGT+TGG 0.487803 3_3:+58317843 Msa0460730:CDS
CGCCTCAGAGTGTCGAAGAA+TGG 0.487931 3_3:-58316913 None:intergenic
ACAGCAGCTTCTAAAACCTT+AGG 0.490308 3_3:-58317998 None:intergenic
AAGTTTGTGACCAAGTGAAA+CGG 0.494196 3_3:-58316336 None:intergenic
TACTATCAAAGCAACTTCCT+TGG 0.494935 3_3:+58315991 None:intergenic
ACGGCGAAAGCTTTCGGGGA+TGG 0.495228 3_3:+58317839 Msa0460730:CDS
TTCACACTTCAACAATTTGA+GGG 0.495504 3_3:+58318426 Msa0460730:three_prime_UTR
TGCCACTCACAAACAAGTGC+TGG 0.499001 3_3:-58317617 None:intergenic
TGGTTTAGAACTGGTGATGT+TGG 0.499794 3_3:+58317863 Msa0460730:CDS
CGTATTCGAGCTCTCCTAGC+CGG 0.500105 3_3:-58317079 None:intergenic
ATGAGATAATTACCTATTGT+AGG 0.504104 3_3:+58318122 Msa0460730:CDS
TGGAGAGTGTGGTAAGAGAT+GGG 0.505965 3_3:+58317747 Msa0460730:CDS
AAGGGAAGTGGAATCATGAT+GGG 0.506638 3_3:+58317794 Msa0460730:CDS
GTTCACACTTCAACAATTTG+AGG 0.509906 3_3:+58318425 Msa0460730:three_prime_UTR
TGCAATATTGAGAGCACGGA+GGG 0.514867 3_3:-58316386 None:intergenic
CATCTTGAATTTCTTCAGGA+AGG 0.517226 3_3:-58317133 None:intergenic
AGGAAGCGAGGCGGCGACAC+CGG 0.518047 3_3:-58316363 None:intergenic
GTGATTGGCACCAAAATTGA+AGG 0.518293 3_3:-58316098 None:intergenic
CTTGAGAAAATCGAGCCACT+TGG 0.519790 3_3:+58317551 Msa0460730:CDS
ATGAAGGAACCCGTTTCACT+TGG 0.520277 3_3:+58316326 Msa0460730:CDS
ATCTGCTTCAGCTTGTTATG+TGG 0.520395 3_3:+58318476 Msa0460730:three_prime_UTR
AGTACTTTGAGTTTAATCCT+TGG 0.521867 3_3:+58317242 Msa0460730:CDS
CTCTCCTAGCCGGATTCCGG+TGG 0.521991 3_3:-58317069 None:intergenic
AGAGCTCGAATACGAGCAAA+TGG 0.523140 3_3:+58317088 Msa0460730:CDS
AGAGGCCTTAAGATTACTCA+TGG 0.524889 3_3:+58316977 Msa0460730:CDS
ATTACATTGAATTACACATC+AGG 0.525480 3_3:+58317167 Msa0460730:CDS
TGTTCTTTATAGTCATCCTA+AGG 0.533616 3_3:+58317982 Msa0460730:CDS
CGATGCTTAAAGCGCGACAA+GGG 0.533885 3_3:+58317675 Msa0460730:CDS
AACTGGTGGAGCACCACCCC+CGG 0.535495 3_3:+58317520 Msa0460730:CDS
TGTGACACTAAGGAAGAATG+AGG 0.538924 3_3:+58318066 Msa0460730:CDS
GAAGGGAAGTGGAATCATGA+TGG 0.539328 3_3:+58317793 Msa0460730:CDS
AAAATAATATTGAAAATGAT+GGG 0.545393 3_3:-58317446 None:intergenic
GTTGGTGTTATACATAAAGA+TGG 0.545404 3_3:+58317881 Msa0460730:CDS
AAAGAGAGTCATAAAATCTC+CGG 0.548039 3_3:+58317487 Msa0460730:CDS
TCGAAGAATGGTGGCTATGT+TGG 0.554863 3_3:-58316901 None:intergenic
CAACCATTACAATGGAACAT+AGG 0.559310 3_3:-58317305 None:intergenic
CACTACCCATTTCCCAACCA+AGG 0.560736 3_3:-58317259 None:intergenic
CACGGAGGGAGGAAGCGAGG+CGG 0.564152 3_3:-58316372 None:intergenic
GGTACAACTTCAGAACCAAA+AGG 0.565976 3_3:+58317188 Msa0460730:CDS
TCTTTGCAATATTGAGAGCA+CGG 0.566149 3_3:-58316390 None:intergenic
TACGAGCAAATGGTTCATCA+TGG 0.574224 3_3:+58317098 Msa0460730:CDS
GTAATGGTTGGACATTCACT+TGG 0.575202 3_3:+58317318 Msa0460730:CDS
CTTGGTCACAAACTTATGAC+CGG 0.576665 3_3:+58316344 Msa0460730:CDS
CATCTATCACAATCACTAGT+GGG 0.580127 3_3:-58317034 None:intergenic
TGGTTAAGAATGAGATTAGG+GGG 0.581716 3_3:-58316144 None:intergenic
GATGGTGTTTAGGACAGCAC+CGG 0.583797 3_3:-58316859 None:intergenic
TAATGGTTGGACATTCACTT+GGG 0.583819 3_3:+58317319 Msa0460730:CDS
GTAACTACAACTAATTCCAA+TGG 0.584509 3_3:+58316204 Msa0460730:exon
TTTAGGACAGCACCGGCCAT+AGG 0.587665 3_3:-58316852 None:intergenic
GAGCACGGAGGGAGGAAGCG+AGG 0.588763 3_3:-58316375 None:intergenic
GTTGTAGTTACCTAAGTGAG+AGG 0.592569 3_3:-58316192 None:intergenic
TCTTGAAACAATGGAGAGTG+TGG 0.595422 3_3:+58317736 Msa0460730:CDS
GGCCAGCACTTGTTTGTGAG+TGG 0.595693 3_3:+58317615 Msa0460730:CDS
GGTGTTGTTTATAGTCATAG+AGG 0.595730 3_3:+58317209 Msa0460730:CDS
TCATCTATCACAATCACTAG+TGG 0.596057 3_3:-58317035 None:intergenic
TGTGAAGAATCTTGAAACAA+TGG 0.596126 3_3:+58317727 Msa0460730:CDS
AAATTATGGAAGATATAACT+AGG 0.597180 3_3:-58318579 None:intergenic
AGCGACGGCGAAAGCTTTCG+GGG 0.597981 3_3:+58317835 Msa0460730:CDS
CGAACCTCAGTCATCCATGA+AGG 0.598539 3_3:+58316310 Msa0460730:CDS
AAGAGATGGGAAAACAATGG+GGG 0.600740 3_3:+58317760 Msa0460730:CDS
TTTCTCAAGTAGGGACGCCG+GGG 0.601501 3_3:-58317537 None:intergenic
CTATGTTGGCCGCATTGAGA+CGG 0.602111 3_3:-58316887 None:intergenic
GGACTGCTCAACCTACTAAG+TGG 0.602551 3_3:-58318558 None:intergenic
TCGATGCTTAAAGCGCGACA+AGG 0.604868 3_3:+58317674 Msa0460730:CDS
CCACCAGTTAGTATATTCAC+CGG 0.607871 3_3:-58317506 None:intergenic
CTCAGAGTGTCGAAGAATGG+TGG 0.608683 3_3:-58316910 None:intergenic
TTGTAGTTACCTAAGTGAGA+GGG 0.608900 3_3:-58316191 None:intergenic
ACGTTATATGTGAAGAGGGT+GGG 0.610172 3_3:-58316073 None:intergenic
ACTCCCACCGGAATCCGGCT+AGG 0.612888 3_3:+58317065 Msa0460730:CDS
TGAATGTCCAACCATTACAA+TGG 0.613092 3_3:-58317313 None:intergenic
GGCCACGTTATATGTGAAGA+GGG 0.615450 3_3:-58316077 None:intergenic
TCTCCTAGCCGGATTCCGGT+GGG 0.615920 3_3:-58317068 None:intergenic
CACGTTATATGTGAAGAGGG+TGG 0.618052 3_3:-58316074 None:intergenic
GGTAAGAGATGGGAAAACAA+TGG 0.619269 3_3:+58317757 Msa0460730:CDS
ACTTGGGGTGTAGCTGCAAG+AGG 0.619778 3_3:+58317335 Msa0460730:CDS
AGGCCACGTTATATGTGAAG+AGG 0.621771 3_3:-58316078 None:intergenic
TAAGAGATGGGAAAACAATG+GGG 0.626561 3_3:+58317759 Msa0460730:CDS
GATGCTTAAAGCGCGACAAG+GGG 0.626984 3_3:+58317676 Msa0460730:CDS
GATGCAGTGAAACTTGTATG+TGG 0.628757 3_3:-58316027 None:intergenic
ATGGATAACCTACCAAAATG+TGG 0.629287 3_3:+58316223 Msa0460730:CDS
AATATTGAGAGCACGGAGGG+AGG 0.632194 3_3:-58316383 None:intergenic
GATGACATAAACACTCCCAC+CGG 0.634917 3_3:+58317053 Msa0460730:CDS
CTTAGTGTCACAAAAGCACA+AGG 0.636960 3_3:-58318055 None:intergenic
TTCTCAAGTAGGGACGCCGG+GGG 0.637975 3_3:-58317536 None:intergenic
TGTTGGCCGCATTGAGACGG+TGG 0.638475 3_3:-58316884 None:intergenic
CACCATTCTTCGACACTCTG+AGG 0.640216 3_3:+58316911 Msa0460730:CDS
TGTGTTACATTAAAACCAAG+TGG 0.640733 3_3:-58317566 None:intergenic
AATGGTTGGACATTCACTTG+GGG 0.644019 3_3:+58317320 Msa0460730:CDS
CACCCTCTTCACATATAACG+TGG 0.645497 3_3:+58316075 Msa0460730:five_prime_UTR
CCGGTGAATATACTAACTGG+TGG 0.647354 3_3:+58317506 Msa0460730:CDS
AAAGATGTGATTATTTCAGG+AGG 0.649768 3_3:+58317929 Msa0460730:CDS
ATCTTAGGTACCATAAAGTG+TGG 0.661614 3_3:-58318154 None:intergenic
GGCCTTAAGATTACTCATGG+AGG 0.667273 3_3:+58316980 Msa0460730:CDS
GTGGAAGTTATAGTATACCA+AGG 0.670695 3_3:-58316008 None:intergenic
AGGGAAGTGGAATCATGATG+GGG 0.670807 3_3:+58317795 Msa0460730:CDS
GTGGTTAAGAATGAGATTAG+GGG 0.674481 3_3:-58316145 None:intergenic
GACACTAAGGAAGAATGAGG+AGG 0.677688 3_3:+58318069 Msa0460730:CDS
TGGGGTGTAGCTGCAAGAGG+AGG 0.680125 3_3:+58317338 Msa0460730:CDS
GGTTAAGAATGAGATTAGGG+GGG 0.681147 3_3:-58316143 None:intergenic
GGTTCCTTCATGGATGACTG+AGG 0.686748 3_3:-58316314 None:intergenic
ATGGACTAACTGAAGCAACA+GGG 0.714883 3_3:+58317594 Msa0460730:CDS
TTGCAATATTGAGAGCACGG+AGG 0.733139 3_3:-58316387 None:intergenic
CATCAACCACCGTCTCAATG+CGG 0.733801 3_3:+58316878 Msa0460730:CDS
GCAATGCCACATCCAAAATG+GGG 0.748056 3_3:+58318025 Msa0460730:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATAATATTGAAAATGAT+GGG - chr3_3:58317449-58317468 None:intergenic 10.0%
!! TAAAATAATATTGAAAATGA+TGG - chr3_3:58317450-58317469 None:intergenic 10.0%
!!! ATCATTTTCAATATTATTTT+AGG + chr3_3:58317449-58317468 Msa0460730:CDS 10.0%
!! TATTACAATATTTGATATTG+CGG - chr3_3:58316675-58316694 None:intergenic 15.0%
!! AAAAAGTTCTTTATATATTG+TGG - chr3_3:58318511-58318530 None:intergenic 15.0%
!! AAATGACTCAAATTAAATTA+TGG - chr3_3:58318596-58318615 None:intergenic 15.0%
!! TATAGAAAATTTCATGTGAT+TGG - chr3_3:58316116-58316135 None:intergenic 20.0%
!! GCGATTTATAAAAACTAAAT+TGG + chr3_3:58316756-58316775 Msa0460730:intron 20.0%
!!! TGGTTTTTGTTTAATAAAAC+AGG + chr3_3:58316776-58316795 Msa0460730:intron 20.0%
!! TATACATAAAGATGGTTATT+TGG + chr3_3:58317889-58317908 Msa0460730:CDS 20.0%
!! GTTATTTGGAAATTAAAGAT+AGG + chr3_3:58317903-58317922 Msa0460730:CDS 20.0%
!!! TTATGATTGACTTGATTATT+TGG - chr3_3:58318292-58318311 None:intergenic 20.0%
!! AAATTATGGAAGATATAACT+AGG - chr3_3:58318582-58318601 None:intergenic 20.0%
! CTTCATAGTCACTAAATTAA+TGG + chr3_3:58316049-58316068 Msa0460730:five_prime_UTR 25.0%
!! AAATGAGAAATTTTGTGTTG+TGG - chr3_3:58316167-58316186 None:intergenic 25.0%
! CAAAATGCAGTATCAAATAT+TGG - chr3_3:58316651-58316670 None:intergenic 25.0%
!! AATAAAACAGGTATCAGTTT+TGG + chr3_3:58316788-58316807 Msa0460730:intron 25.0%
! ATTCATATCAAAAGCAAAAG+AGG + chr3_3:58316959-58316978 Msa0460730:CDS 25.0%
! GATGTGTAATTCAATGTAAT+TGG - chr3_3:58317167-58317186 None:intergenic 25.0%
! ATTACATTGAATTACACATC+AGG + chr3_3:58317167-58317186 Msa0460730:CDS 25.0%
! TGTCACATTATAGAGATTTA+TGG - chr3_3:58317411-58317430 None:intergenic 25.0%
! TTTAATGTAACACATGCTTA+TGG + chr3_3:58317575-58317594 Msa0460730:CDS 25.0%
!!! TTTTAAAGATAAAGAAGCGA+CGG + chr3_3:58317820-58317839 Msa0460730:CDS 25.0%
! TCTAAAGATGTGATTATTTC+AGG + chr3_3:58317926-58317945 Msa0460730:CDS 25.0%
! ATGAGATAATTACCTATTGT+AGG + chr3_3:58318122-58318141 Msa0460730:CDS 25.0%
! TCATAATAATGACCAGATTA+TGG + chr3_3:58318306-58318325 Msa0460730:CDS 25.0%
TGTGGTTAAGAATGAGATTA+GGG - chr3_3:58316149-58316168 None:intergenic 30.0%
TTGTGGTTAAGAATGAGATT+AGG - chr3_3:58316150-58316169 None:intergenic 30.0%
GTAACTACAACTAATTCCAA+TGG + chr3_3:58316204-58316223 Msa0460730:exon 30.0%
TGATATCATATCCTAGATTG+CGG - chr3_3:58316613-58316632 None:intergenic 30.0%
ATTTCTTCAGGAAGGTAATT+TGG - chr3_3:58317128-58317147 None:intergenic 30.0%
CATTCATCTTGAATTTCTTC+AGG - chr3_3:58317140-58317159 None:intergenic 30.0%
CTGAAGAAATTCAAGATGAA+TGG + chr3_3:58317138-58317157 Msa0460730:CDS 30.0%
! TGACTATAAACAACACCTTT+TGG - chr3_3:58317206-58317225 None:intergenic 30.0%
! AGTACTTTGAGTTTAATCCT+TGG + chr3_3:58317242-58317261 Msa0460730:CDS 30.0%
! TTTGAGTTTAATCCTTGGTT+GGG + chr3_3:58317247-58317266 Msa0460730:CDS 30.0%
TTACCTATGTTCCATTGTAA+TGG + chr3_3:58317302-58317321 Msa0460730:CDS 30.0%
AAAGAGAGTCATAAAATCTC+CGG + chr3_3:58317487-58317506 Msa0460730:CDS 30.0%
TGTGTTACATTAAAACCAAG+TGG - chr3_3:58317569-58317588 None:intergenic 30.0%
TGTGAAGAATCTTGAAACAA+TGG + chr3_3:58317727-58317746 Msa0460730:CDS 30.0%
!! GTTGGTGTTATACATAAAGA+TGG + chr3_3:58317881-58317900 Msa0460730:CDS 30.0%
AAAGATGTGATTATTTCAGG+AGG + chr3_3:58317929-58317948 Msa0460730:CDS 30.0%
TGTTCTTTATAGTCATCCTA+AGG + chr3_3:58317982-58318001 Msa0460730:CDS 30.0%
!! TGATTTTTGTTGTGTTACTG+AGG + chr3_3:58318099-58318118 Msa0460730:CDS 30.0%
TGGTAAATTCTTCCTACAAT+AGG - chr3_3:58318137-58318156 None:intergenic 30.0%
GAAGAATTTACCACACTTTA+TGG + chr3_3:58318144-58318163 Msa0460730:CDS 30.0%
!!! ACCTAAGATGGTTGTTTTTA+TGG + chr3_3:58318168-58318187 Msa0460730:CDS 30.0%
TCCATAAAAACAACCATCTT+AGG - chr3_3:58318172-58318191 None:intergenic 30.0%
!!! TAAGATGGTTGTTTTTATGG+AGG + chr3_3:58318171-58318190 Msa0460730:CDS 30.0%
GATTTACCAAAGACTTTAAC+AGG + chr3_3:58318193-58318212 Msa0460730:CDS 30.0%
ATCTTACCTGTTAAAGTCTT+TGG - chr3_3:58318202-58318221 None:intergenic 30.0%
TTCACACTTCAACAATTTGA+GGG + chr3_3:58318426-58318445 Msa0460730:three_prime_UTR 30.0%
GAAACAACTAACAAGAAAGT+TGG - chr3_3:58318539-58318558 None:intergenic 30.0%
GTGGAAGTTATAGTATACCA+AGG - chr3_3:58316011-58316030 None:intergenic 35.0%
! TATAACGTGGCCTTCAATTT+TGG + chr3_3:58316088-58316107 Msa0460730:five_prime_UTR 35.0%
TGGTTAAGAATGAGATTAGG+GGG - chr3_3:58316147-58316166 None:intergenic 35.0%
GTGGTTAAGAATGAGATTAG+GGG - chr3_3:58316148-58316167 None:intergenic 35.0%
!!! CATTTTTTTCCCTCTCACTT+AGG + chr3_3:58316182-58316201 Msa0460730:five_prime_UTR 35.0%
TTGTAGTTACCTAAGTGAGA+GGG - chr3_3:58316194-58316213 None:intergenic 35.0%
!! CATTTTGGTAGGTTATCCAT+TGG - chr3_3:58316223-58316242 None:intergenic 35.0%
ATGGATAACCTACCAAAATG+TGG + chr3_3:58316223-58316242 Msa0460730:CDS 35.0%
!!! GTATAGTTTGCTCCACATTT+TGG - chr3_3:58316238-58316257 None:intergenic 35.0%
GAAAGTTAAAGGAGTGAGTA+TGG - chr3_3:58316260-58316279 None:intergenic 35.0%
GCTCTCATCAAGAAAGTTAA+AGG - chr3_3:58316271-58316290 None:intergenic 35.0%
AAGTTTGTGACCAAGTGAAA+CGG - chr3_3:58316339-58316358 None:intergenic 35.0%
TCTTTGCAATATTGAGAGCA+CGG - chr3_3:58316393-58316412 None:intergenic 35.0%
TCATACATTGCTGGAATGTT+TGG - chr3_3:58316816-58316835 None:intergenic 35.0%
AAATGCATCTCATACATTGC+TGG - chr3_3:58316825-58316844 None:intergenic 35.0%
TTCCTCCATGAGTAATCTTA+AGG - chr3_3:58316985-58317004 None:intergenic 35.0%
AAGATTACTCATGGAGGAAA+AGG + chr3_3:58316986-58317005 Msa0460730:CDS 35.0%
CATCTATCACAATCACTAGT+GGG - chr3_3:58317037-58317056 None:intergenic 35.0%
TCATCTATCACAATCACTAG+TGG - chr3_3:58317038-58317057 None:intergenic 35.0%
CATCTTGAATTTCTTCAGGA+AGG - chr3_3:58317136-58317155 None:intergenic 35.0%
!! GGTGTTGTTTATAGTCATAG+AGG + chr3_3:58317209-58317228 Msa0460730:CDS 35.0%
! CTTTGAGTTTAATCCTTGGT+TGG + chr3_3:58317246-58317265 Msa0460730:CDS 35.0%
TTTAATCCTTGGTTGGGAAA+TGG + chr3_3:58317253-58317272 Msa0460730:CDS 35.0%
TTAATCCTTGGTTGGGAAAT+GGG + chr3_3:58317254-58317273 Msa0460730:CDS 35.0%
GTAGTGAACCAGTTTATCTA+TGG + chr3_3:58317276-58317295 Msa0460730:CDS 35.0%
GGTAATGTCCATAGATAAAC+TGG - chr3_3:58317287-58317306 None:intergenic 35.0%
CAACCATTACAATGGAACAT+AGG - chr3_3:58317308-58317327 None:intergenic 35.0%
CTATGTTCCATTGTAATGGT+TGG + chr3_3:58317306-58317325 Msa0460730:CDS 35.0%
TGAATGTCCAACCATTACAA+TGG - chr3_3:58317316-58317335 None:intergenic 35.0%
TAATGGTTGGACATTCACTT+GGG + chr3_3:58317319-58317338 Msa0460730:CDS 35.0%
! TTTATGACTCTCTTTTCGCT+TGG - chr3_3:58317482-58317501 None:intergenic 35.0%
GTAAGAGATGGGAAAACAAT+GGG + chr3_3:58317758-58317777 Msa0460730:CDS 35.0%
TAAGAGATGGGAAAACAATG+GGG + chr3_3:58317759-58317778 Msa0460730:CDS 35.0%
ATCTTAGGTACCATAAAGTG+TGG - chr3_3:58318157-58318176 None:intergenic 35.0%
ACACTTTATGGTACCTAAGA+TGG + chr3_3:58318156-58318175 Msa0460730:CDS 35.0%
TACCACAAAACACTTAGCTT+TGG - chr3_3:58318245-58318264 None:intergenic 35.0%
GTTCACACTTCAACAATTTG+AGG + chr3_3:58318425-58318444 Msa0460730:three_prime_UTR 35.0%
! GTTAGTTGTTTCCACTTAGT+AGG + chr3_3:58318547-58318566 Msa0460730:three_prime_UTR 35.0%
GATGCAGTGAAACTTGTATG+TGG - chr3_3:58316030-58316049 None:intergenic 40.0%
ACGTTATATGTGAAGAGGGT+GGG - chr3_3:58316076-58316095 None:intergenic 40.0%
GTGATTGGCACCAAAATTGA+AGG - chr3_3:58316101-58316120 None:intergenic 40.0%
GGTTAAGAATGAGATTAGGG+GGG - chr3_3:58316146-58316165 None:intergenic 40.0%
GTTGTAGTTACCTAAGTGAG+AGG - chr3_3:58316195-58316214 None:intergenic 40.0%
!! AGTTTGCTCCACATTTTGGT+AGG - chr3_3:58316234-58316253 None:intergenic 40.0%
AGTTTGTGACCAAGTGAAAC+GGG - chr3_3:58316338-58316357 None:intergenic 40.0%
CTTGGTCACAAACTTATGAC+CGG + chr3_3:58316344-58316363 Msa0460730:CDS 40.0%
! GATGCATTTTGCAGTACCTA+TGG + chr3_3:58316836-58316855 Msa0460730:CDS 40.0%
AGAGGCCTTAAGATTACTCA+TGG + chr3_3:58316977-58316996 Msa0460730:CDS 40.0%
TACGAGCAAATGGTTCATCA+TGG + chr3_3:58317098-58317117 Msa0460730:CDS 40.0%
GGTACAACTTCAGAACCAAA+AGG + chr3_3:58317188-58317207 Msa0460730:CDS 40.0%
GTAATGGTTGGACATTCACT+TGG + chr3_3:58317318-58317337 Msa0460730:CDS 40.0%
AATGGTTGGACATTCACTTG+GGG + chr3_3:58317320-58317339 Msa0460730:CDS 40.0%
TCTCCGGTGAATATACTAAC+TGG + chr3_3:58317503-58317522 Msa0460730:CDS 40.0%
CCACCAGTTAGTATATTCAC+CGG - chr3_3:58317509-58317528 None:intergenic 40.0%
! TGGCTCGATTTTCTCAAGTA+GGG - chr3_3:58317549-58317568 None:intergenic 40.0%
! TATGGACTAACTGAAGCAAC+AGG + chr3_3:58317593-58317612 Msa0460730:CDS 40.0%
! ATGGACTAACTGAAGCAACA+GGG + chr3_3:58317594-58317613 Msa0460730:CDS 40.0%
TTTGTGAGTGGCAGAAGAAA+TGG + chr3_3:58317627-58317646 Msa0460730:CDS 40.0%
!!! AGCATCGATTGCTCTCTTTT+CGG - chr3_3:58317662-58317681 None:intergenic 40.0%
TCTTGAAACAATGGAGAGTG+TGG + chr3_3:58317736-58317755 Msa0460730:CDS 40.0%
GGTAAGAGATGGGAAAACAA+TGG + chr3_3:58317757-58317776 Msa0460730:CDS 40.0%
AAGAGATGGGAAAACAATGG+GGG + chr3_3:58317760-58317779 Msa0460730:CDS 40.0%
AATGGGGGAGATTATGTTGA+AGG + chr3_3:58317775-58317794 Msa0460730:CDS 40.0%
ATGGGGGAGATTATGTTGAA+GGG + chr3_3:58317776-58317795 Msa0460730:CDS 40.0%
GAGATTATGTTGAAGGGAAG+TGG + chr3_3:58317782-58317801 Msa0460730:CDS 40.0%
AAGGGAAGTGGAATCATGAT+GGG + chr3_3:58317794-58317813 Msa0460730:CDS 40.0%
! TGGTTTAGAACTGGTGATGT+TGG + chr3_3:58317863-58317882 Msa0460730:CDS 40.0%
!! ACAGCAGCTTCTAAAACCTT+AGG - chr3_3:58318001-58318020 None:intergenic 40.0%
TTGCAATGCCACATCCAAAA+TGG + chr3_3:58318023-58318042 Msa0460730:CDS 40.0%
TGCAATGCCACATCCAAAAT+GGG + chr3_3:58318024-58318043 Msa0460730:CDS 40.0%
! CTTAGTGTCACAAAAGCACA+AGG - chr3_3:58318058-58318077 None:intergenic 40.0%
! CTTGTGCTTTTGTGACACTA+AGG + chr3_3:58318056-58318075 Msa0460730:CDS 40.0%
TGTGACACTAAGGAAGAATG+AGG + chr3_3:58318066-58318085 Msa0460730:CDS 40.0%
! AGCCAAAGCTAAGTGTTTTG+TGG + chr3_3:58318240-58318259 Msa0460730:CDS 40.0%
!! ATCTGCTTCAGCTTGTTATG+TGG + chr3_3:58318476-58318495 Msa0460730:three_prime_UTR 40.0%
CACGTTATATGTGAAGAGGG+TGG - chr3_3:58316077-58316096 None:intergenic 45.0%
CACCCTCTTCACATATAACG+TGG + chr3_3:58316075-58316094 Msa0460730:five_prime_UTR 45.0%
GGCCACGTTATATGTGAAGA+GGG - chr3_3:58316080-58316099 None:intergenic 45.0%
AGGCCACGTTATATGTGAAG+AGG - chr3_3:58316081-58316100 None:intergenic 45.0%
CTTCATGGATGACTGAGGTT+CGG - chr3_3:58316312-58316331 None:intergenic 45.0%
! AAGTGAAACGGGTTCCTTCA+TGG - chr3_3:58316327-58316346 None:intergenic 45.0%
ATGAAGGAACCCGTTTCACT+TGG + chr3_3:58316326-58316345 Msa0460730:CDS 45.0%
! TGCAATATTGAGAGCACGGA+GGG - chr3_3:58316389-58316408 None:intergenic 45.0%
! TTGCAATATTGAGAGCACGG+AGG - chr3_3:58316390-58316409 None:intergenic 45.0%
! CATTTTGCAGTACCTATGGC+CGG + chr3_3:58316840-58316859 Msa0460730:CDS 45.0%
TCGAAGAATGGTGGCTATGT+TGG - chr3_3:58316904-58316923 None:intergenic 45.0%
GGCCTTAAGATTACTCATGG+AGG + chr3_3:58316980-58316999 Msa0460730:CDS 45.0%
GATGACATAAACACTCCCAC+CGG + chr3_3:58317053-58317072 Msa0460730:CDS 45.0%
AGAGCTCGAATACGAGCAAA+TGG + chr3_3:58317088-58317107 Msa0460730:CDS 45.0%
CCGGTGAATATACTAACTGG+TGG + chr3_3:58317506-58317525 Msa0460730:CDS 45.0%
! ATTTTCTCAAGTAGGGACGC+CGG - chr3_3:58317542-58317561 None:intergenic 45.0%
! GTGGCTCGATTTTCTCAAGT+AGG - chr3_3:58317550-58317569 None:intergenic 45.0%
CTTGAGAAAATCGAGCCACT+TGG + chr3_3:58317551-58317570 Msa0460730:CDS 45.0%
! ATGGAGAGTGTGGTAAGAGA+TGG + chr3_3:58317746-58317765 Msa0460730:CDS 45.0%
! TGGAGAGTGTGGTAAGAGAT+GGG + chr3_3:58317747-58317766 Msa0460730:CDS 45.0%
GAAGGGAAGTGGAATCATGA+TGG + chr3_3:58317793-58317812 Msa0460730:CDS 45.0%
AGGGAAGTGGAATCATGATG+GGG + chr3_3:58317795-58317814 Msa0460730:CDS 45.0%
GCAATGCCACATCCAAAATG+GGG + chr3_3:58318025-58318044 Msa0460730:CDS 45.0%
! CTTTCACCCCATTTTGGATG+TGG - chr3_3:58318034-58318053 None:intergenic 45.0%
! CAAGGACTTTCACCCCATTT+TGG - chr3_3:58318040-58318059 None:intergenic 45.0%
GACACTAAGGAAGAATGAGG+AGG + chr3_3:58318069-58318088 Msa0460730:CDS 45.0%
GACGAGATAGAGCCATAATC+TGG - chr3_3:58318321-58318340 None:intergenic 45.0%
CGAACCTCAGTCATCCATGA+AGG + chr3_3:58316310-58316329 Msa0460730:CDS 50.0%
GGTTCCTTCATGGATGACTG+AGG - chr3_3:58316317-58316336 None:intergenic 50.0%
! AATATTGAGAGCACGGAGGG+AGG - chr3_3:58316386-58316405 None:intergenic 50.0%
TAGATTGCGGTCGCTGATCT+AGG - chr3_3:58316600-58316619 None:intergenic 50.0%
TAGATCAGCGACCGCAATCT+AGG + chr3_3:58316599-58316618 Msa0460730:intron 50.0%
! GATGGTGTTTAGGACAGCAC+CGG - chr3_3:58316862-58316881 None:intergenic 50.0%
!! GACGGTGGTTGATGGTGTTT+AGG - chr3_3:58316872-58316891 None:intergenic 50.0%
CATCAACCACCGTCTCAATG+CGG + chr3_3:58316878-58316897 Msa0460730:CDS 50.0%
CTATGTTGGCCGCATTGAGA+CGG - chr3_3:58316890-58316909 None:intergenic 50.0%
!! CTCAGAGTGTCGAAGAATGG+TGG - chr3_3:58316913-58316932 None:intergenic 50.0%
CACCATTCTTCGACACTCTG+AGG + chr3_3:58316911-58316930 Msa0460730:CDS 50.0%
TAAACACTCCCACCGGAATC+CGG + chr3_3:58317060-58317079 Msa0460730:CDS 50.0%
CACTACCCATTTCCCAACCA+AGG - chr3_3:58317262-58317281 None:intergenic 50.0%
! TTTTCTCAAGTAGGGACGCC+GGG - chr3_3:58317541-58317560 None:intergenic 50.0%
TGCCACTCACAAACAAGTGC+TGG - chr3_3:58317620-58317639 None:intergenic 50.0%
TCGATGCTTAAAGCGCGACA+AGG + chr3_3:58317674-58317693 Msa0460730:CDS 50.0%
CGATGCTTAAAGCGCGACAA+GGG + chr3_3:58317675-58317694 Msa0460730:CDS 50.0%
GATGCTTAAAGCGCGACAAG+GGG + chr3_3:58317676-58317695 Msa0460730:CDS 50.0%
!! GGGGATGGTTGGTTTAGAAC+TGG + chr3_3:58317854-58317873 Msa0460730:CDS 50.0%
GGACTGCTCAACCTACTAAG+TGG - chr3_3:58318561-58318580 None:intergenic 50.0%
!! TTTAGGACAGCACCGGCCAT+AGG - chr3_3:58316855-58316874 None:intergenic 55.0%
CGCATTGAGACGGTGGTTGA+TGG - chr3_3:58316880-58316899 None:intergenic 55.0%
!! CGCCTCAGAGTGTCGAAGAA+TGG - chr3_3:58316916-58316935 None:intergenic 55.0%
CGTATTCGAGCTCTCCTAGC+CGG - chr3_3:58317082-58317101 None:intergenic 55.0%
ACTTGGGGTGTAGCTGCAAG+AGG + chr3_3:58317335-58317354 Msa0460730:CDS 55.0%
TTTCTCAAGTAGGGACGCCG+GGG - chr3_3:58317540-58317559 None:intergenic 55.0%
GGCCAGCACTTGTTTGTGAG+TGG + chr3_3:58317615-58317634 Msa0460730:CDS 55.0%
GAAGCGACGGCGAAAGCTTT+CGG + chr3_3:58317833-58317852 Msa0460730:CDS 55.0%
AAGCGACGGCGAAAGCTTTC+GGG + chr3_3:58317834-58317853 Msa0460730:CDS 55.0%
CGAAAGCTTTCGGGGATGGT+TGG + chr3_3:58317843-58317862 Msa0460730:CDS 55.0%
TGTTGGCCGCATTGAGACGG+TGG - chr3_3:58316887-58316906 None:intergenic 60.0%
TCTCCTAGCCGGATTCCGGT+GGG - chr3_3:58317071-58317090 None:intergenic 60.0%
GAGCTCTCCTAGCCGGATTC+CGG - chr3_3:58317075-58317094 None:intergenic 60.0%
TGGGGTGTAGCTGCAAGAGG+AGG + chr3_3:58317338-58317357 Msa0460730:CDS 60.0%
TTCTCAAGTAGGGACGCCGG+GGG - chr3_3:58317539-58317558 None:intergenic 60.0%
AGCGACGGCGAAAGCTTTCG+GGG + chr3_3:58317835-58317854 Msa0460730:CDS 60.0%
ACGGCGAAAGCTTTCGGGGA+TGG + chr3_3:58317839-58317858 Msa0460730:CDS 60.0%
ACTCCCACCGGAATCCGGCT+AGG + chr3_3:58317065-58317084 Msa0460730:CDS 65.0%
CTCTCCTAGCCGGATTCCGG+TGG - chr3_3:58317072-58317091 None:intergenic 65.0%
! AACTGGTGGAGCACCACCCC+CGG + chr3_3:58317520-58317539 Msa0460730:CDS 65.0%
AGGAAGCGAGGCGGCGACAC+CGG - chr3_3:58316366-58316385 None:intergenic 70.0%
CACGGAGGGAGGAAGCGAGG+CGG - chr3_3:58316375-58316394 None:intergenic 70.0%
GAGCACGGAGGGAGGAAGCG+AGG - chr3_3:58316378-58316397 None:intergenic 70.0%
TCAAGTAGGGACGCCGGGGG+TGG - chr3_3:58317536-58317555 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 58316001 58318651 58316001 ID=Msa0460730;Name=Msa0460730
chr3_3 mRNA 58316001 58318651 58316001 ID=Msa0460730-mRNA-1;Parent=Msa0460730;Name=Msa0460730-mRNA-1;_AED=0.01;_eAED=0.01;_QI=222|1|1|1|1|1|2|306|581
chr3_3 exon 58316001 58316420 58316001 ID=Msa0460730-mRNA-1:exon:12120;Parent=Msa0460730-mRNA-1
chr3_3 exon 58316798 58318651 58316798 ID=Msa0460730-mRNA-1:exon:12121;Parent=Msa0460730-mRNA-1
chr3_3 five_prime_UTR 58316001 58316222 58316001 ID=Msa0460730-mRNA-1:five_prime_utr;Parent=Msa0460730-mRNA-1
chr3_3 CDS 58316223 58316420 58316223 ID=Msa0460730-mRNA-1:cds;Parent=Msa0460730-mRNA-1
chr3_3 CDS 58316798 58318345 58316798 ID=Msa0460730-mRNA-1:cds;Parent=Msa0460730-mRNA-1
chr3_3 three_prime_UTR 58318346 58318651 58318346 ID=Msa0460730-mRNA-1:three_prime_utr;Parent=Msa0460730-mRNA-1
Gene Sequence

>Msa0460730

ATGGATAACCTACCAAAATGTGGAGCAAACTATACCATACTCACTCCTTTAACTTTCTTGATGAGAGCTTCTGCATCTTATGCAAACCGAACCTCAGTCATCCATGAAGGAACCCGTTTCACTTGGTCACAAACTTATGACCGGTGTCGCCGCCTCGCTTCCTCCCTCCGTGCTCTCAATATTGCAAAGAATGATGTTGTATCAGTTTTGGCACCAAACATTCCAGCAATGTATGAGATGCATTTTGCAGTACCTATGGCCGGTGCTGTCCTAAACACCATCAACCACCGTCTCAATGCGGCCAACATAGCCACCATTCTTCGACACTCTGAGGCGAAAGTCTTCTTCGTAGACTACGAATTCATATCAAAAGCAAAAGAGGCCTTAAGATTACTCATGGAGGAAAAGGATCAAAAAGAACAATACTCATCACTCCCACTAGTGATTGTGATAGATGACATAAACACTCCCACCGGAATCCGGCTAGGAGAGCTCGAATACGAGCAAATGGTTCATCATGGTAATCCAAATTACCTTCCTGAAGAAATTCAAGATGAATGGTCACCAATTACATTGAATTACACATCAGGTACAACTTCAGAACCAAAAGGTGTTGTTTATAGTCATAGAGGAGCTTATTTAAGTACTTTGAGTTTAATCCTTGGTTGGGAAATGGGTAGTGAACCAGTTTATCTATGGACATTACCTATGTTCCATTGTAATGGTTGGACATTCACTTGGGGTGTAGCTGCAAGAGGAGGTACTAATATTTGTATCAGAAACACTGCAGCATCTGATATATATAGAGCCATAAATCTCTATAATGTGACACACATGTGTTGCGCACCCATCATTTTCAATATTATTTTAGGCGCGAAACCAAGCGAAAAGAGAGTCATAAAATCTCCGGTGAATATACTAACTGGTGGAGCACCACCCCCGGCGTCCCTACTTGAGAAAATCGAGCCACTTGGTTTTAATGTAACACATGCTTATGGACTAACTGAAGCAACAGGGCCAGCACTTGTTTGTGAGTGGCAGAAGAAATGGAATGTGTTACCGAAAAGAGAGCAATCGATGCTTAAAGCGCGACAAGGGGTTAGTGTTTTGACACTTGCTGATGTTGATGTGAAGAATCTTGAAACAATGGAGAGTGTGGTAAGAGATGGGAAAACAATGGGGGAGATTATGTTGAAGGGAAGTGGAATCATGATGGGGTATTTTAAAGATAAAGAAGCGACGGCGAAAGCTTTCGGGGATGGTTGGTTTAGAACTGGTGATGTTGGTGTTATACATAAAGATGGTTATTTGGAAATTAAAGATAGGTCTAAAGATGTGATTATTTCAGGAGGTGAAAATATTAGTAGTGTTGAAGTTGAAAATGTTCTTTATAGTCATCCTAAGGTTTTAGAAGCTGCTGTTGTTGCAATGCCACATCCAAAATGGGGTGAAAGTCCTTGTGCTTTTGTGACACTAAGGAAGAATGAGGAGGAAAAAAGTGATTTTTGTTGTGTTACTGAGGATGAGATAATTACCTATTGTAGGAAGAATTTACCACACTTTATGGTACCTAAGATGGTTGTTTTTATGGAGGATTTACCAAAGACTTTAACAGGTAAGATTCAGAAATTTGAATTAAGAGCCAAAGCTAAGTGTTTTGTGGTAAATGATGAGAAGAATAAGAAGAAGCCAAATAATCAAGTCAATCATAATAATGACCAGATTATGGCTCTATCTCGTCTTTGA
Protein sequence

>Msa0460730

MDNLPKCGANYTILTPLTFLMRASASYANRTSVIHEGTRFTWSQTYDRCRRLASSLRALNIAKNDVVSVLAPNIPAMYEMHFAVPMAGAVLNTINHRLNAANIATILRHSEAKVFFVDYEFISKAKEALRLLMEEKDQKEQYSSLPLVIVIDDINTPTGIRLGELEYEQMVHHGNPNYLPEEIQDEWSPITLNYTSGTTSEPKGVVYSHRGAYLSTLSLILGWEMGSEPVYLWTLPMFHCNGWTFTWGVAARGGTNICIRNTAASDIYRAINLYNVTHMCCAPIIFNIILGAKPSEKRVIKSPVNILTGGAPPPASLLEKIEPLGFNVTHAYGLTEATGPALVCEWQKKWNVLPKREQSMLKARQGVSVLTLADVDVKNLETMESVVRDGKTMGEIMLKGSGIMMGYFKDKEATAKAFGDGWFRTGDVGVIHKDGYLEIKDRSKDVIISGGENISSVEVENVLYSHPKVLEAAVVAMPHPKWGESPCAFVTLRKNEEEKSDFCCVTEDEIITYCRKNLPHFMVPKMVVFMEDLPKTLTGKIQKFELRAKAKCFVVNDEKNKKKPNNQVNHNNDQIMALSRL*