AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1373500


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1373500 MtrunA17_Chr4g0064961 96.795 468 15 0 1 468 1 468 0.0 938
Msa1373500 MtrunA17_Chr1g0149571 60.045 443 136 7 62 463 43 485 0.0 517
Msa1373500 MtrunA17_Chr3g0137381 64.507 355 121 4 113 464 14 366 6.69e-161 459
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1373500 AT4G32060.1 62.222 405 129 5 64 445 67 470 1.54e-174 499
Msa1373500 AT4G32060.2 62.331 369 115 5 64 409 67 434 6.31e-154 445

Find 106 sgRNAs with CRISPR-Local

Find 193 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCAGTTATGGAAAAGTTAA+TGG 0.221348 tig0019439:-18958 Msa1373500:CDS
CCTTTCATCACCACCATTTC+CGG 0.227693 tig0019439:+21039 None:intergenic
GTGTTAATGCTTGTAATATT+AGG 0.241414 tig0019439:-18292 Msa1373500:three_prime_UTR
TTGGGACCACCTTAGGCTTT+TGG 0.283646 tig0019439:-20964 Msa1373500:CDS
GAAGACATTTCCTCACGTTT+TGG 0.303320 tig0019439:-18672 Msa1373500:CDS
CAATGTAATGTAACTTGTTT+AGG 0.310605 tig0019439:+21255 None:intergenic
AGAAGGGTGGTATATGCATT+TGG 0.312703 tig0019439:-18560 Msa1373500:three_prime_UTR
TGCAAAATCCTTGGCCGAAA+TGG 0.315325 tig0019439:+19146 None:intergenic
CCCTATCTTGAATCTGCATT+TGG 0.315756 tig0019439:+18512 None:intergenic
TAGTTTCTGAGAGGTGAAAA+TGG 0.330278 tig0019439:+18585 None:intergenic
TTAAGAGGGGAACAGTTTCC+CGG 0.335893 tig0019439:-20050 Msa1373500:CDS
GCCACTGAAAAGCTGGATTC+TGG 0.336535 tig0019439:+19796 None:intergenic
GAAGGGTGGTATATGCATTT+GGG 0.347349 tig0019439:-18559 Msa1373500:three_prime_UTR
GTGAAAACACCGATAGAAAA+TGG 0.353884 tig0019439:-19526 Msa1373500:CDS
TTTCTTAGGACAATAACTTC+TGG 0.357278 tig0019439:-20998 Msa1373500:CDS
TGGTCATCTTTATCTTCTCC+TGG 0.361095 tig0019439:-20938 Msa1373500:CDS
AAATCCAAGTTTCTCTTCAA+TGG 0.378137 tig0019439:-20845 Msa1373500:intron
TTCTTAGGACAATAACTTCT+GGG 0.389196 tig0019439:-20997 Msa1373500:CDS
CTTCTGGGACTGTGGTTGTT+GGG 0.392623 tig0019439:-20982 Msa1373500:CDS
ACCAAATGCAGATTCAAGAT+AGG 0.395746 tig0019439:-18513 Msa1373500:three_prime_UTR
GTGGTTGTTGGGACCACCTT+AGG 0.398220 tig0019439:-20971 Msa1373500:CDS
TTCATAACTAATCTAGTCAT+TGG 0.400768 tig0019439:+18264 None:intergenic
GTTAGAGAAGGTTCTTTAAG+AGG 0.402225 tig0019439:-20065 Msa1373500:CDS
CAATAAAAGAGGAACCATTT+CGG 0.419212 tig0019439:-19160 Msa1373500:CDS
TTTAAAAGCCACTGAAAAGC+TGG 0.420902 tig0019439:+19789 None:intergenic
GATAGAAAATGGCGGTCTCT+TGG 0.430949 tig0019439:-19515 Msa1373500:CDS
TCTCTGGCCATATTCAGTTA+TGG 0.434138 tig0019439:-18970 Msa1373500:CDS
TGGAAAAGTTAATGGAGTAT+TGG 0.435781 tig0019439:-18950 Msa1373500:CDS
TGTTTGATATTGACAGTAAC+GGG 0.436083 tig0019439:-19765 Msa1373500:intron
ATGTAACTTGTTTAGGTTGA+AGG 0.436891 tig0019439:+21262 None:intergenic
ACATAAACAAACTGCTGGAT+AGG 0.437978 tig0019439:-19092 Msa1373500:CDS
TAGCATAATCAGAGAAAGAA+TGG 0.443313 tig0019439:+20900 None:intergenic
CTCTTTGACACAAATAATGA+TGG 0.456116 tig0019439:-19993 Msa1373500:CDS
TAATCACATAAACAAACTGC+TGG 0.470159 tig0019439:-19097 Msa1373500:CDS
TTGCAAATCTACATTGCTAC+AGG 0.472197 tig0019439:+18469 None:intergenic
ACTTCTGGGACTGTGGTTGT+TGG 0.473411 tig0019439:-20983 Msa1373500:CDS
CAGATTCAAGATAGGGAAGC+AGG 0.473492 tig0019439:-18505 Msa1373500:three_prime_UTR
CAAGGATAGTGCAAAATCCT+TGG 0.474280 tig0019439:+19137 None:intergenic
GATTCAGAAGGAGGAAATAC+AGG 0.475894 tig0019439:+20095 None:intergenic
CCGGAAATGGTGGTGATGAA+AGG 0.477987 tig0019439:-21039 Msa1373500:CDS
AGACAAAAGAATTACGTTTG+AGG 0.485400 tig0019439:-19037 Msa1373500:CDS
TCGAGTACTTTGCATCGAAT+CGG 0.486747 tig0019439:-20172 Msa1373500:CDS
AAGAGGAACCATTTCGGCCA+AGG 0.487222 tig0019439:-19154 Msa1373500:CDS
CACTATGATCACAATAAAAG+AGG 0.488832 tig0019439:-19171 Msa1373500:CDS
GTTACCATTGAAGAGAAACT+TGG 0.490627 tig0019439:+20841 None:intergenic
CTTGCAAAGTCCTCCAGAAA+AGG 0.491838 tig0019439:-20303 Msa1373500:intron
TGTTGGTTGAACTGTGTAAA+GGG 0.494222 tig0019439:-18630 Msa1373500:CDS
ACCTCTCAGAAACTAAAAGA+AGG 0.495468 tig0019439:-18577 Msa1373500:three_prime_UTR
TTTAGACATGAATTCATATG+TGG 0.498327 tig0019439:+18188 None:intergenic
GAAGTTGCAGTCCTTCTCTC+TGG 0.500761 tig0019439:-18986 Msa1373500:CDS
GACAATAACTTCTGGGACTG+TGG 0.505115 tig0019439:-20990 Msa1373500:CDS
TTAGAGAAGGTTCTTTAAGA+GGG 0.506873 tig0019439:-20064 Msa1373500:CDS
TGTTATGTCGTAGAGTCTGT+TGG 0.508095 tig0019439:+21134 None:intergenic
ATGACGTGGTGCGTTGTGAT+TGG 0.519972 tig0019439:+21095 None:intergenic
AAGAGAAGAAAACGTTTGAG+AGG 0.527446 tig0019439:+21303 None:intergenic
CACAGAGACGGACGACGCCT+CGG 0.527556 tig0019439:-19550 Msa1373500:CDS
AGGTTGAAGGTAGAAATTTG+AGG 0.528830 tig0019439:+21275 None:intergenic
CGGAAATGGTGGTGATGAAA+GGG 0.529236 tig0019439:-21038 Msa1373500:CDS
GTCTTTGATGCTAACCGTGA+TGG 0.529666 tig0019439:-18738 Msa1373500:CDS
TTGGGAATTTGATAACATGT+TGG 0.531352 tig0019439:-18647 Msa1373500:CDS
CCAAATGCAGATTCAAGATA+GGG 0.535702 tig0019439:-18512 Msa1373500:three_prime_UTR
TTTGCATCGAATCGGATCCC+TGG 0.540228 tig0019439:-20164 Msa1373500:CDS
CCCAAGAAAACAACATGCTA+AGG 0.544582 tig0019439:+21167 None:intergenic
AGACTCTACGACATAACATA+AGG 0.546354 tig0019439:-21129 Msa1373500:CDS
ATGTTTGATATTGACAGTAA+CGG 0.548784 tig0019439:-19766 Msa1373500:CDS
ATGGCACGCATCAAATCTGC+AGG 0.550914 tig0019439:+20122 None:intergenic
GGATCGCATTCTAACGAGCC+GGG 0.556208 tig0019439:+20032 None:intergenic
CATAAACAAACTGCTGGATA+GGG 0.559819 tig0019439:-19091 Msa1373500:CDS
AGACAGAAGCCATGTCATCA+TGG 0.565536 tig0019439:+18433 None:intergenic
AGGATCGCATTCTAACGAGC+CGG 0.567310 tig0019439:+20031 None:intergenic
TTTCTCTGATTATGCTACTG+AGG 0.570594 tig0019439:-20894 Msa1373500:CDS
ATATTACAAGCATTAACACT+AGG 0.580632 tig0019439:+18296 None:intergenic
TGGAAAGAGTTATTAGCACC+AGG 0.582088 tig0019439:+20920 None:intergenic
GAATCAAGACGTGTTAGAGA+AGG 0.583261 tig0019439:-20077 Msa1373500:CDS
AGAGAAGAAAACGTTTGAGA+GGG 0.585027 tig0019439:+21304 None:intergenic
ATGTTGGTTGAACTGTGTAA+AGG 0.593116 tig0019439:-18631 Msa1373500:CDS
ACTGAATATGGCCAGAGAGA+AGG 0.593953 tig0019439:+18975 None:intergenic
CCTCTCAGAAACTAAAAGAA+GGG 0.603062 tig0019439:-18576 Msa1373500:three_prime_UTR
GAATCGGATCCCTGGTGGCG+AGG 0.604717 tig0019439:-20156 Msa1373500:CDS
GGAAGAATTCAAGAAAGTGA+TGG 0.607415 tig0019439:-19608 Msa1373500:CDS
CAAGGGGCTAACCACAGAGA+CGG 0.611869 tig0019439:-19562 Msa1373500:CDS
TGCGATCTCAAAACAGACAA+GGG 0.611915 tig0019439:-19579 Msa1373500:CDS
TGACCAATACCAAAAGCCTA+AGG 0.612300 tig0019439:+20955 None:intergenic
TAGAGAAGGTTCTTTAAGAG+GGG 0.613134 tig0019439:-20063 Msa1373500:CDS
ACACGTCTTGATTCAGAAGG+AGG 0.614124 tig0019439:+20086 None:intergenic
CTAACACGTCTTGATTCAGA+AGG 0.614135 tig0019439:+20083 None:intergenic
TCTTTGATGCTAACCGTGAT+GGG 0.618328 tig0019439:-18737 Msa1373500:CDS
TGTCAACAGGGAAATAGACA+TGG 0.623190 tig0019439:-19629 Msa1373500:intron
CTCAGAAACTAAAAGAAGGG+TGG 0.628738 tig0019439:-18573 Msa1373500:three_prime_UTR
AGGAGGAAATACAGGAACAA+TGG 0.629403 tig0019439:+20103 None:intergenic
CGGAGAAGAAGACGATGACG+TGG 0.631999 tig0019439:+21081 None:intergenic
TTTGATGGGTCCGGAAATGG+TGG 0.634496 tig0019439:-21049 Msa1373500:CDS
CTTAAGACAACTGCATGATG+AGG 0.635950 tig0019439:-19434 Msa1373500:intron
ATGCGATCTCAAAACAGACA+AGG 0.640169 tig0019439:-19580 Msa1373500:CDS
TATTACAAGCATTAACACTA+GGG 0.642244 tig0019439:+18297 None:intergenic
ATTCCCAAATCCAAAACGTG+AGG 0.644135 tig0019439:+18662 None:intergenic
ACTATCAAACCATGATGACA+TGG 0.647117 tig0019439:-18442 Msa1373500:three_prime_UTR
AATGTCTGCAGATGCAACCA+AGG 0.647906 tig0019439:+19119 None:intergenic
GCATCGAATCGGATCCCTGG+TGG 0.649676 tig0019439:-20161 Msa1373500:CDS
CGTTGTGATTGGCTACACAA+CGG 0.666146 tig0019439:+21106 None:intergenic
TTGCACTTAAGCTCCCATCA+CGG 0.666778 tig0019439:+18724 None:intergenic
TGTAATGTCATGTAGGTATG+CGG 0.675183 tig0019439:-18801 Msa1373500:intron
GACCCATCAAAAGAGCTCAA+CGG 0.680319 tig0019439:+21061 None:intergenic
CCAATACCAAAAGCCTAAGG+TGG 0.680665 tig0019439:+20958 None:intergenic
GCGATCTCAAAACAGACAAG+GGG 0.683071 tig0019439:-19578 Msa1373500:CDS
AAAACACCGATAGAAAATGG+CGG 0.745164 tig0019439:-19523 Msa1373500:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGTTTAATTGTTAATTTATT+TGG - tig0019439:19078-19097 Msa1373500:CDS 10.0%
!!! TTAGTATTAAAATTGCTTTT+TGG - tig0019439:18790-18809 Msa1373500:intron 15.0%
!!! TAGTATTAAAATTGCTTTTT+GGG - tig0019439:18791-18810 Msa1373500:intron 15.0%
!!! TATCAATTTAAAGCTAATTT+AGG + tig0019439:18848-18867 None:intergenic 15.0%
!!! TATTTTTTATAGACAAATGT+TGG - tig0019439:18992-19011 Msa1373500:CDS 15.0%
!! AATTGTTAATTTATTTGGTT+TGG - tig0019439:19083-19102 Msa1373500:CDS 15.0%
!!! ATAACAAAATATCTTGTTTT+TGG - tig0019439:19640-19659 Msa1373500:intron 15.0%
!! TGCATATTATAATTTATTTG+AGG - tig0019439:20135-20154 Msa1373500:CDS 15.0%
!!! ATATATTTTTAGGCATAATA+GGG + tig0019439:20617-20636 None:intergenic 15.0%
!!! AATATATTTTTAGGCATAAT+AGG + tig0019439:20618-20637 None:intergenic 15.0%
!!! ACTACTGTAAATATATTTTT+AGG + tig0019439:20627-20646 None:intergenic 15.0%
!! AGATGAATAACTTATTATTA+CGG - tig0019439:20668-20687 Msa1373500:intron 15.0%
!! TTTGAATCTGTTACTATATA+TGG - tig0019439:18717-18736 Msa1373500:CDS 20.0%
!!! AGTATTAAAATTGCTTTTTG+GGG - tig0019439:18792-18811 Msa1373500:intron 20.0%
!! TAATTTAGGAAGAAAACATT+AGG + tig0019439:18834-18853 None:intergenic 20.0%
!!! AGCTTTAAATTGATAATCAT+AGG - tig0019439:18853-18872 Msa1373500:intron 20.0%
!!! AATTGATAATCATAGGTTTT+TGG - tig0019439:18860-18879 Msa1373500:intron 20.0%
!!! ATATCTTTATGTTTCTGTTT+TGG - tig0019439:19120-19139 Msa1373500:CDS 20.0%
!! TGTCATATTAAAACATTCAA+TGG + tig0019439:19285-19304 None:intergenic 20.0%
!! AAATTATAATATGCAGATCT+TGG + tig0019439:20130-20149 None:intergenic 20.0%
!!! AAAAAACTTTTCAATCTTCA+AGG + tig0019439:20207-20226 None:intergenic 20.0%
!!! GAATTTTACAAGATAACTTT+TGG - tig0019439:20241-20260 Msa1373500:intron 20.0%
!!! CAATGTAATGTAACTTGTTT+AGG + tig0019439:18245-18264 None:intergenic 25.0%
!!! GAGATTTTGAGTATTTTCTT+AGG - tig0019439:18485-18504 Msa1373500:three_prime_UTR 25.0%
!!! GTATTAAAATTGCTTTTTGG+GGG - tig0019439:18793-18812 Msa1373500:intron 25.0%
! ACACTATTGAATTGAATACT+TGG - tig0019439:18930-18949 Msa1373500:CDS 25.0%
! ATTGAATACTTGGAATATGA+AGG - tig0019439:18940-18959 Msa1373500:CDS 25.0%
! TTGAATACTTGGAATATGAA+GGG - tig0019439:18941-18960 Msa1373500:CDS 25.0%
!! TTTTTATAGACAAATGTTGG+TGG - tig0019439:18995-19014 Msa1373500:CDS 25.0%
! AATTAAACTGCAAGAATTCA+TGG + tig0019439:19067-19086 None:intergenic 25.0%
!! AAGAGCATAAAAAATTCAGA+AGG + tig0019439:19489-19508 None:intergenic 25.0%
! ATGTTTGATATTGACAGTAA+CGG - tig0019439:19731-19750 Msa1373500:intron 25.0%
!! ATGCAAACTACATTAAGTTT+TGG - tig0019439:19798-19817 Msa1373500:CDS 25.0%
! AATTCCATCAATAAAACTGA+AGG + tig0019439:19824-19843 None:intergenic 25.0%
!!! GAGTATTTTTTTGGAAAAGA+TGG - tig0019439:20004-20023 Msa1373500:CDS 25.0%
!! TAGTTAGATTCTGTGTTATT+AGG - tig0019439:20178-20197 Msa1373500:CDS 25.0%
!! ATTCTTTTGTCTCTTATATG+TGG + tig0019439:20452-20471 None:intergenic 25.0%
!! AACTTTTCCATAACTGAATA+TGG + tig0019439:20537-20556 None:intergenic 25.0%
! TTCAGTTATGGAAAAGTTAA+TGG - tig0019439:20539-20558 Msa1373500:intron 25.0%
!!! TCTTAGCTTTTGTTTCTATT+TGG - tig0019439:21167-21186 Msa1373500:exon 25.0%
! TATTACAAGCATTAACACTA+GGG + tig0019439:21203-21222 None:intergenic 25.0%
! ATATTACAAGCATTAACACT+AGG + tig0019439:21204-21223 None:intergenic 25.0%
! GTGTTAATGCTTGTAATATT+AGG - tig0019439:21205-21224 Msa1373500:five_prime_UTR 25.0%
! TTCATAACTAATCTAGTCAT+TGG + tig0019439:21236-21255 None:intergenic 25.0%
! TTTAGACATGAATTCATATG+TGG + tig0019439:21312-21331 None:intergenic 25.0%
!! ATGTAACTTGTTTAGGTTGA+AGG + tig0019439:18238-18257 None:intergenic 30.0%
TTTCTTAGGACAATAACTTC+TGG - tig0019439:18499-18518 Msa1373500:three_prime_UTR 30.0%
TTCTTAGGACAATAACTTCT+GGG - tig0019439:18500-18519 Msa1373500:three_prime_UTR 30.0%
TAGCATAATCAGAGAAAGAA+TGG + tig0019439:18600-18619 None:intergenic 30.0%
AAATCCAAGTTTCTCTTCAA+TGG - tig0019439:18652-18671 Msa1373500:CDS 30.0%
TGCAACTTCATCAATTTCAT+GGG + tig0019439:18756-18775 None:intergenic 30.0%
TTGCAACTTCATCAATTTCA+TGG + tig0019439:18757-18776 None:intergenic 30.0%
! ACAAGATTGATTACCTTTTC+TGG + tig0019439:19210-19229 None:intergenic 30.0%
ATTCAATGGTAACAATTTGC+TGG + tig0019439:19271-19290 None:intergenic 30.0%
! TTAGAGAAGGTTCTTTAAGA+GGG - tig0019439:19433-19452 Msa1373500:intron 30.0%
CTCTTTGACACAAATAATGA+TGG - tig0019439:19504-19523 Msa1373500:CDS 30.0%
TCATATTTCTCATGACAAAC+AGG + tig0019439:19582-19601 None:intergenic 30.0%
!!! ATATCTTGTTTTTGGATACC+AGG - tig0019439:19648-19667 Msa1373500:intron 30.0%
AGTGACAAAAAATATGTACC+TGG + tig0019439:19669-19688 None:intergenic 30.0%
TGTTTGATATTGACAGTAAC+GGG - tig0019439:19732-19751 Msa1373500:intron 30.0%
!! TTGTTTGTTGTATTGTCAAC+AGG - tig0019439:19855-19874 Msa1373500:intron 30.0%
!! TGTTTGTTGTATTGTCAACA+GGG - tig0019439:19856-19875 Msa1373500:intron 30.0%
CACTATGATCACAATAAAAG+AGG - tig0019439:20326-20345 Msa1373500:CDS 30.0%
CAATAAAAGAGGAACCATTT+CGG - tig0019439:20337-20356 Msa1373500:CDS 30.0%
TAATCACATAAACAAACTGC+TGG - tig0019439:20400-20419 Msa1373500:intron 30.0%
AGACAAAAGAATTACGTTTG+AGG - tig0019439:20460-20479 Msa1373500:intron 30.0%
TGGAAAAGTTAATGGAGTAT+TGG - tig0019439:20547-20566 Msa1373500:intron 30.0%
! TTGGGAATTTGATAACATGT+TGG - tig0019439:20850-20869 Msa1373500:CDS 30.0%
AGAGAAGAAAACGTTTGAGA+GGG + tig0019439:18196-18215 None:intergenic 35.0%
AAGAGAAGAAAACGTTTGAG+AGG + tig0019439:18197-18216 None:intergenic 35.0%
AGGTTGAAGGTAGAAATTTG+AGG + tig0019439:18225-18244 None:intergenic 35.0%
!!! ACCTTAGCATGTTGTTTTCT+TGG - tig0019439:18329-18348 Msa1373500:three_prime_UTR 35.0%
!!! CCTTAGCATGTTGTTTTCTT+GGG - tig0019439:18330-18349 Msa1373500:three_prime_UTR 35.0%
!!! CTTAGCATGTTGTTTTCTTG+GGG - tig0019439:18331-18350 Msa1373500:three_prime_UTR 35.0%
AGACTCTACGACATAACATA+AGG - tig0019439:18368-18387 Msa1373500:three_prime_UTR 35.0%
TTTCTCTGATTATGCTACTG+AGG - tig0019439:18603-18622 Msa1373500:exon 35.0%
GTTACCATTGAAGAGAAACT+TGG + tig0019439:18659-18678 None:intergenic 35.0%
! TTGGAATATGAAGGGTATGA+TGG - tig0019439:18949-18968 Msa1373500:CDS 35.0%
!! TGTTGGTGGTTAATGTGTTA+AGG - tig0019439:19009-19028 Msa1373500:CDS 35.0%
! AGATTGATTACCTTTTCTGG+AGG + tig0019439:19207-19226 None:intergenic 35.0%
GTTAGAGAAGGTTCTTTAAG+AGG - tig0019439:19432-19451 Msa1373500:intron 35.0%
! TAGAGAAGGTTCTTTAAGAG+GGG - tig0019439:19434-19453 Msa1373500:intron 35.0%
!!! TGATGGACTCATTTCTTTTG+CGG - tig0019439:19521-19540 Msa1373500:CDS 35.0%
TTTAAAAGCCACTGAAAAGC+TGG + tig0019439:19711-19730 None:intergenic 35.0%
TAACTTCTGACATTCACGAA+AGG + tig0019439:19775-19794 None:intergenic 35.0%
!!! TTGGCCTTCAGTTTTATTGA+TGG - tig0019439:19817-19836 Msa1373500:CDS 35.0%
GGAAGAATTCAAGAAAGTGA+TGG - tig0019439:19889-19908 Msa1373500:intron 35.0%
GTGAAAACACCGATAGAAAA+TGG - tig0019439:19971-19990 Msa1373500:intron 35.0%
AAAACACCGATAGAAAATGG+CGG - tig0019439:19974-19993 Msa1373500:intron 35.0%
!!! GGTCTCTTGGAGTATTTTTT+TGG - tig0019439:19995-20014 Msa1373500:CDS 35.0%
ACATAAACAAACTGCTGGAT+AGG - tig0019439:20405-20424 Msa1373500:intron 35.0%
CATAAACAAACTGCTGGATA+GGG - tig0019439:20406-20425 Msa1373500:intron 35.0%
GGTATCATGTAATGTCATGT+AGG - tig0019439:20689-20708 Msa1373500:intron 35.0%
TGTAATGTCATGTAGGTATG+CGG - tig0019439:20696-20715 Msa1373500:intron 35.0%
!! ATTTCCTCACGTTTTGGATT+TGG - tig0019439:20831-20850 Msa1373500:intron 35.0%
!! TTTCCTCACGTTTTGGATTT+GGG - tig0019439:20832-20851 Msa1373500:intron 35.0%
! ATGTTGGTTGAACTGTGTAA+AGG - tig0019439:20866-20885 Msa1373500:CDS 35.0%
! TGTTGGTTGAACTGTGTAAA+GGG - tig0019439:20867-20886 Msa1373500:CDS 35.0%
! TAGTTTCTGAGAGGTGAAAA+TGG + tig0019439:20915-20934 None:intergenic 35.0%
ACCTCTCAGAAACTAAAAGA+AGG - tig0019439:20920-20939 Msa1373500:CDS 35.0%
CCTCTCAGAAACTAAAAGAA+GGG - tig0019439:20921-20940 Msa1373500:CDS 35.0%
!! GCATTTGGGTTTTACAGTAA+TGG - tig0019439:20952-20971 Msa1373500:CDS 35.0%
ACCAAATGCAGATTCAAGAT+AGG - tig0019439:20984-21003 Msa1373500:CDS 35.0%
CCAAATGCAGATTCAAGATA+GGG - tig0019439:20985-21004 Msa1373500:CDS 35.0%
TTGCAAATCTACATTGCTAC+AGG + tig0019439:21031-21050 None:intergenic 35.0%
ACTATCAAACCATGATGACA+TGG - tig0019439:21055-21074 Msa1373500:CDS 35.0%
CCCAAGAAAACAACATGCTA+AGG + tig0019439:18333-18352 None:intergenic 40.0%
TGTTATGTCGTAGAGTCTGT+TGG + tig0019439:18366-18385 None:intergenic 40.0%
TGACCAATACCAAAAGCCTA+AGG + tig0019439:18545-18564 None:intergenic 40.0%
TGGTCATCTTTATCTTCTCC+TGG - tig0019439:18559-18578 Msa1373500:three_prime_UTR 40.0%
TGGAAAGAGTTATTAGCACC+AGG + tig0019439:18580-18599 None:intergenic 40.0%
!! GATAGACTTGCTAGCTTCTT+AGG - tig0019439:18890-18909 Msa1373500:intron 40.0%
! TTGCTAGCTTCTTAGGACTT+AGG - tig0019439:18897-18916 Msa1373500:intron 40.0%
! TGCTAGCTTCTTAGGACTTA+GGG - tig0019439:18898-18917 Msa1373500:intron 40.0%
! ATGAAGGGTATGATGGAAGT+AGG - tig0019439:18956-18975 Msa1373500:CDS 40.0%
! ATGACACCTTGTTTGATTCC+AGG - tig0019439:19299-19318 Msa1373500:intron 40.0%
CGAAAACCTGGAATCAAACA+AGG + tig0019439:19308-19327 None:intergenic 40.0%
! ATGCAAAGTACTCGAAAACC+TGG + tig0019439:19320-19339 None:intergenic 40.0%
TCGAGTACTTTGCATCGAAT+CGG - tig0019439:19325-19344 Msa1373500:intron 40.0%
AGGAGGAAATACAGGAACAA+TGG + tig0019439:19397-19416 None:intergenic 40.0%
GATTCAGAAGGAGGAAATAC+AGG + tig0019439:19405-19424 None:intergenic 40.0%
CTAACACGTCTTGATTCAGA+AGG + tig0019439:19417-19436 None:intergenic 40.0%
GAATCAAGACGTGTTAGAGA+AGG - tig0019439:19420-19439 Msa1373500:intron 40.0%
TCTGACATTCACGAAAGGAA+AGG + tig0019439:19770-19789 None:intergenic 40.0%
TGTCAACAGGGAAATAGACA+TGG - tig0019439:19868-19887 Msa1373500:intron 40.0%
ATGCGATCTCAAAACAGACA+AGG - tig0019439:19917-19936 Msa1373500:intron 40.0%
TGCGATCTCAAAACAGACAA+GGG - tig0019439:19918-19937 Msa1373500:intron 40.0%
!! AAGAGACCGCCATTTTCTAT+CGG + tig0019439:19983-20002 None:intergenic 40.0%
CTTAAGACAACTGCATGATG+AGG - tig0019439:20063-20082 Msa1373500:CDS 40.0%
CAAGGATAGTGCAAAATCCT+TGG + tig0019439:20363-20382 None:intergenic 40.0%
! CAAGGATTTTGCACTATCCT+TGG - tig0019439:20361-20380 Msa1373500:intron 40.0%
! TGAGGAGTTCAAAGCTTTTG+CGG - tig0019439:20478-20497 Msa1373500:intron 40.0%
TCTCTGGCCATATTCAGTTA+TGG - tig0019439:20527-20546 Msa1373500:intron 40.0%
! TTTTCAAAGAGCAGCATCTC+AGG - tig0019439:20580-20599 Msa1373500:intron 40.0%
TCTTTGATGCTAACCGTGAT+GGG - tig0019439:20760-20779 Msa1373500:intron 40.0%
! GAAGACATTTCCTCACGTTT+TGG - tig0019439:20825-20844 Msa1373500:intron 40.0%
ATTCCCAAATCCAAAACGTG+AGG + tig0019439:20838-20857 None:intergenic 40.0%
!!! CCCTTCTTTTAGTTTCTGAG+AGG + tig0019439:20924-20943 None:intergenic 40.0%
CTCAGAAACTAAAAGAAGGG+TGG - tig0019439:20924-20943 Msa1373500:CDS 40.0%
AGAAGGGTGGTATATGCATT+TGG - tig0019439:20937-20956 Msa1373500:CDS 40.0%
GAAGGGTGGTATATGCATTT+GGG - tig0019439:20938-20957 Msa1373500:CDS 40.0%
CCCTATCTTGAATCTGCATT+TGG + tig0019439:20988-21007 None:intergenic 40.0%
! CGTTGTGATTGGCTACACAA+CGG + tig0019439:18394-18413 None:intergenic 45.0%
! TCTCCGTTGAGCTCTTTTGA+TGG - tig0019439:18433-18452 Msa1373500:three_prime_UTR 45.0%
! CTCCGTTGAGCTCTTTTGAT+GGG - tig0019439:18434-18453 Msa1373500:three_prime_UTR 45.0%
GACCCATCAAAAGAGCTCAA+CGG + tig0019439:18439-18458 None:intergenic 45.0%
!! TTGAGCTCTTTTGATGGGTC+CGG - tig0019439:18439-18458 Msa1373500:three_prime_UTR 45.0%
!! TCTTTTGATGGGTCCGGAAA+TGG - tig0019439:18445-18464 Msa1373500:three_prime_UTR 45.0%
CCTTTCATCACCACCATTTC+CGG + tig0019439:18461-18480 None:intergenic 45.0%
! CGGAAATGGTGGTGATGAAA+GGG - tig0019439:18459-18478 Msa1373500:three_prime_UTR 45.0%
!! GACAATAACTTCTGGGACTG+TGG - tig0019439:18507-18526 Msa1373500:three_prime_UTR 45.0%
CCAATACCAAAAGCCTAAGG+TGG + tig0019439:18542-18561 None:intergenic 45.0%
! CCACCTTAGGCTTTTGGTAT+TGG - tig0019439:18539-18558 Msa1373500:three_prime_UTR 45.0%
CTTGCAAAGTCCTCCAGAAA+AGG - tig0019439:19194-19213 Msa1373500:CDS 45.0%
TCATAAAAACCTCGCCACCA+GGG + tig0019439:19353-19372 None:intergenic 45.0%
ACACGTCTTGATTCAGAAGG+AGG + tig0019439:19414-19433 None:intergenic 45.0%
TTAAGAGGGGAACAGTTTCC+CGG - tig0019439:19447-19466 Msa1373500:CDS 45.0%
! ACCAGAATCCAGCTTTTCAG+TGG - tig0019439:19700-19719 Msa1373500:intron 45.0%
CATTCACGAAAGGAAAGGAG+AGG + tig0019439:19765-19784 None:intergenic 45.0%
GCGATCTCAAAACAGACAAG+GGG - tig0019439:19919-19938 Msa1373500:intron 45.0%
GATAGAAAATGGCGGTCTCT+TGG - tig0019439:19982-20001 Msa1373500:CDS 45.0%
AAAGATGCTGCAAGACCATG+AGG + tig0019439:20106-20125 None:intergenic 45.0%
TGCAAAATCCTTGGCCGAAA+TGG + tig0019439:20354-20373 None:intergenic 45.0%
AATGTCTGCAGATGCAACCA+AGG + tig0019439:20381-20400 None:intergenic 45.0%
ACTGAATATGGCCAGAGAGA+AGG + tig0019439:20525-20544 None:intergenic 45.0%
GTCTTTGATGCTAACCGTGA+TGG - tig0019439:20759-20778 Msa1373500:intron 45.0%
TTGCACTTAAGCTCCCATCA+CGG + tig0019439:20776-20795 None:intergenic 45.0%
CAGATTCAAGATAGGGAAGC+AGG - tig0019439:20992-21011 Msa1373500:CDS 45.0%
AGACAGAAGCCATGTCATCA+TGG + tig0019439:21067-21086 None:intergenic 45.0%
ATGACGTGGTGCGTTGTGAT+TGG + tig0019439:18405-18424 None:intergenic 50.0%
! TTTGATGGGTCCGGAAATGG+TGG - tig0019439:18448-18467 Msa1373500:three_prime_UTR 50.0%
! CCGGAAATGGTGGTGATGAA+AGG - tig0019439:18458-18477 Msa1373500:three_prime_UTR 50.0%
!! ACTTCTGGGACTGTGGTTGT+TGG - tig0019439:18514-18533 Msa1373500:three_prime_UTR 50.0%
!! CTTCTGGGACTGTGGTTGTT+GGG - tig0019439:18515-18534 Msa1373500:three_prime_UTR 50.0%
! TTGGGACCACCTTAGGCTTT+TGG - tig0019439:18533-18552 Msa1373500:three_prime_UTR 50.0%
TTTGCATCGAATCGGATCCC+TGG - tig0019439:19333-19352 Msa1373500:intron 50.0%
GTCATAAAAACCTCGCCACC+AGG + tig0019439:19354-19373 None:intergenic 50.0%
ATGGCACGCATCAAATCTGC+AGG + tig0019439:19378-19397 None:intergenic 50.0%
AGGATCGCATTCTAACGAGC+CGG + tig0019439:19469-19488 None:intergenic 50.0%
GCCACTGAAAAGCTGGATTC+TGG + tig0019439:19704-19723 None:intergenic 50.0%
!! CTATCGGTGTTTTCACTCCG+AGG + tig0019439:19967-19986 None:intergenic 50.0%
TGTGAGCCTCTCAAACCTCA+TGG - tig0019439:20088-20107 Msa1373500:CDS 50.0%
GCAAGACCATGAGGTTTGAG+AGG + tig0019439:20097-20116 None:intergenic 50.0%
AAGAGGAACCATTTCGGCCA+AGG - tig0019439:20343-20362 Msa1373500:CDS 50.0%
GAAGTTGCAGTCCTTCTCTC+TGG - tig0019439:20511-20530 Msa1373500:intron 50.0%
CGGAGAAGAAGACGATGACG+TGG + tig0019439:18419-18438 None:intergenic 55.0%
GTGGTTGTTGGGACCACCTT+AGG - tig0019439:18526-18545 Msa1373500:three_prime_UTR 55.0%
GGATCGCATTCTAACGAGCC+GGG + tig0019439:19468-19487 None:intergenic 55.0%
CAAGGGGCTAACCACAGAGA+CGG - tig0019439:19935-19954 Msa1373500:intron 55.0%
GCATCGAATCGGATCCCTGG+TGG - tig0019439:19336-19355 Msa1373500:intron 60.0%
! GAATCGGATCCCTGGTGGCG+AGG - tig0019439:19341-19360 Msa1373500:intron 65.0%
CACAGAGACGGACGACGCCT+CGG - tig0019439:19947-19966 Msa1373500:intron 65.0%
!! CGAGGCGTCGTCCGTCTCTG+TGG + tig0019439:19949-19968 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
tig0019439 gene 18188 21331 18188 ID=Msa1373500;Name=Msa1373500
tig0019439 mRNA 18188 21331 18188 ID=Msa1373500-mRNA-1;Parent=Msa1373500;Name=Msa1373500-mRNA-1;_AED=0.09;_eAED=0.09;_QI=149|1|1|1|1|1|7|432|468
tig0019439 exon 18188 18808 18188 ID=Msa1373500-mRNA-1:exon:3385;Parent=Msa1373500-mRNA-1
tig0019439 exon 18918 19214 18918 ID=Msa1373500-mRNA-1:exon:3384;Parent=Msa1373500-mRNA-1
tig0019439 exon 19435 19642 19435 ID=Msa1373500-mRNA-1:exon:3383;Parent=Msa1373500-mRNA-1
tig0019439 exon 19766 19849 19766 ID=Msa1373500-mRNA-1:exon:3382;Parent=Msa1373500-mRNA-1
tig0019439 exon 19975 20198 19975 ID=Msa1373500-mRNA-1:exon:3381;Parent=Msa1373500-mRNA-1
tig0019439 exon 20304 20371 20304 ID=Msa1373500-mRNA-1:exon:3380;Parent=Msa1373500-mRNA-1
tig0019439 exon 20846 21331 20846 ID=Msa1373500-mRNA-1:exon:3379;Parent=Msa1373500-mRNA-1
tig0019439 five_prime_UTR 21183 21331 21183 ID=Msa1373500-mRNA-1:five_prime_utr;Parent=Msa1373500-mRNA-1
tig0019439 CDS 20846 21182 20846 ID=Msa1373500-mRNA-1:cds;Parent=Msa1373500-mRNA-1
tig0019439 CDS 20304 20371 20304 ID=Msa1373500-mRNA-1:cds;Parent=Msa1373500-mRNA-1
tig0019439 CDS 19975 20198 19975 ID=Msa1373500-mRNA-1:cds;Parent=Msa1373500-mRNA-1
tig0019439 CDS 19766 19849 19766 ID=Msa1373500-mRNA-1:cds;Parent=Msa1373500-mRNA-1
tig0019439 CDS 19435 19642 19435 ID=Msa1373500-mRNA-1:cds;Parent=Msa1373500-mRNA-1
tig0019439 CDS 18918 19214 18918 ID=Msa1373500-mRNA-1:cds;Parent=Msa1373500-mRNA-1
tig0019439 CDS 18620 18808 18620 ID=Msa1373500-mRNA-1:cds;Parent=Msa1373500-mRNA-1
tig0019439 three_prime_UTR 18188 18619 18188 ID=Msa1373500-mRNA-1:three_prime_utr;Parent=Msa1373500-mRNA-1
Gene Sequence

>Msa1373500

ATGTTGTTTTCTTGGGGAAGAAGATTCCAACAGACTCTACGACATAACATAAGGCCGTTGTGTAGCCAATCACAACGCACCACGTCATCGTCTTCTTCTCCGTTGAGCTCTTTTGATGGGTCCGGAAATGGTGGTGATGAAAGGGTTAGAGATTTTGAGTATTTTCTTAGGACAATAACTTCTGGGACTGTGGTTGTTGGGACCACCTTAGGCTTTTGGTATTGGTCATCTTTATCTTCTCCTGGTGCTAATAACTCTTTCCATTCTTTCTCTGATTATGCTACTGAGGATCAGTTTCAACAAAACTATCAAAATAAATCCAAGTTTCTCTTCAATGATAGTTATCGAAGAAGAGTATTCTTCAACTACGAAAAACGTCTTCGCTTGCAAAGTCCTCCAGAAAAGGTTTTCGAGTACTTTGCATCGAATCGGATCCCTGGTGGCGAGGTTTTTATGACACCTGCAGATTTGATGCGTGCCATTGTTCCTGTATTTCCTCCTTCTGAATCAAGACGTGTTAGAGAAGGTTCTTTAAGAGGGGAACAGTTTCCCGGCTCGTTAGAATGCGATCCTTCTGAATTTTTTATGCTCTTTGACACAAATAATGATGGACTCATTTCTTTTGCGGAGTACATATTTTTTGTCACTCTTCTCAGCATACCAGAATCCAGCTTTTCAGTGGCTTTTAAAATGTTTGATATTGACAGTAACGGGGAAATAGACATGGAAGAATTCAAGAAAGTGATGGCGTTGATGCGATCTCAAAACAGACAAGGGGCTAACCACAGAGACGGACGACGCCTCGGAGTGAAAACACCGATAGAAAATGGCGGTCTCTTGGAGTATTTTTTTGGAAAAGATGGAAAAGATTGCTTACAACATGACAAATTTGTTCAATTCTTAAGACAACTGCATGATGAGATCTTGAGATTAGAATTTTCTCACTATGATCACAATAAAAGAGGAACCATTTCGGCCAAGGATTTTGCACTATCCTTGGTTGCATCTGCAGACATTAATCACATAAACAAACTGCTGGATAGGGTCGACGAATTAGACAATGATCCACATATAAGAGACAAAAGAATTACGTTTGAGGAGTTCAAAGCTTTTGCGGAATTGCGCAAGAAGTTGCAGTCCTTCTCTCTGGCCATATTCAGTTATGGAAAAGTTAATGGAGTATTGGCAAAAAATGATTTTCAAAGAGCAGCATCTCAGGTATGCGGCGTCGATATTACAGAGAATGTACTTGACATAATTTTTCATGTCTTTGATGCTAACCGTGATGGGAGCTTAAGTGCAAGCGAGTTTGTTCGAGTTATACAAAGAAGAGAAGACATTTCCTCACGTTTTGGATTTGGGAATTTGATAACATGTTGGTTGAACTGTGTAAAGGGTAAATGTTAA

Protein sequence

>Msa1373500

MLFSWGRRFQQTLRHNIRPLCSQSQRTTSSSSSPLSSFDGSGNGGDERVRDFEYFLRTITSGTVVVGTTLGFWYWSSLSSPGANNSFHSFSDYATEDQFQQNYQNKSKFLFNDSYRRRVFFNYEKRLRLQSPPEKVFEYFASNRIPGGEVFMTPADLMRAIVPVFPPSESRRVREGSLRGEQFPGSLECDPSEFFMLFDTNNDGLISFAEYIFFVTLLSIPESSFSVAFKMFDIDSNGEIDMEEFKKVMALMRSQNRQGANHRDGRRLGVKTPIENGGLLEYFFGKDGKDCLQHDKFVQFLRQLHDEILRLEFSHYDHNKRGTISAKDFALSLVASADINHINKLLDRVDELDNDPHIRDKRITFEEFKAFAELRKKLQSFSLAIFSYGKVNGVLAKNDFQRAASQVCGVDITENVLDIIFHVFDANRDGSLSASEFVRVIQRREDISSRFGFGNLITCWLNCVKGKC*