AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0683650

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0683650 MtrunA17_Chr4g0030581 95.923 417 16 1 422 837 56 472 0.0 799
Msa0683650 MtrunA17_Chr4g0030581 78.390 472 53 5 1 423 1 472 0.0 732
Msa0683650 MtrunA17_Chr4g0030591 85.201 473 20 5 1 423 1 473 0.0 777
Msa0683650 MtrunA17_Chr4g0030591 84.487 419 63 1 421 837 55 473 0.0 717
Msa0683650 MtrunA17_Chr4g0030601 88.462 416 41 1 422 837 56 464 0.0 765
Msa0683650 MtrunA17_Chr4g0030601 78.541 466 55 5 1 423 1 464 0.0 739
Msa0683650 MtrunA17_Chr2g0327721 72.816 412 106 4 426 832 60 470 0.0 627
Msa0683650 MtrunA17_Chr2g0327721 63.270 471 119 8 1 418 1 470 0.0 602
Msa0683650 MtrunA17_Chr1g0212951 56.341 410 169 2 424 823 59 468 1.31e-170 502
Msa0683650 MtrunA17_Chr1g0212951 46.237 465 192 6 3 409 4 468 2.05e-145 437
Msa0683650 MtrunA17_Chr7g0276251 44.275 393 197 6 422 806 147 525 3.76e-107 340
Msa0683650 MtrunA17_Chr7g0276251 38.785 428 209 9 12 392 104 525 8.44e-94 304
Msa0683650 MtrunA17_Chr5g0423521 42.133 375 203 4 434 806 125 487 6.66e-101 322
Msa0683650 MtrunA17_Chr5g0423521 35.831 427 215 9 16 392 70 487 1.49e-83 276
Msa0683650 MtrunA17_Chr1g0188051 42.602 392 207 5 421 806 124 503 3.49e-99 318
Msa0683650 MtrunA17_Chr1g0188051 36.613 437 220 8 4 392 76 503 4.30e-86 283
Msa0683650 MtrunA17_Chr1g0209881 41.067 375 207 4 434 806 125 487 7.43e-99 317
Msa0683650 MtrunA17_Chr1g0209881 33.803 426 226 8 14 392 71 487 4.05e-81 269
Msa0683650 MtrunA17_Chr4g0035081 40.409 391 216 5 421 806 121 499 8.43e-98 314
Msa0683650 MtrunA17_Chr4g0035081 34.537 443 230 8 3 394 68 501 5.40e-84 277
Msa0683650 MtrunA17_Chr4g0063011 41.161 379 208 4 431 806 125 491 3.12e-96 310
Msa0683650 MtrunA17_Chr4g0063011 34.216 453 217 9 3 410 71 487 5.29e-82 272
Msa0683650 MtrunA17_Chr2g0306781 42.239 393 208 6 418 806 19 396 4.94e-96 306
Msa0683650 MtrunA17_Chr2g0306781 37.534 373 194 6 50 392 33 396 6.04e-78 258
Msa0683650 MtrunA17_Chr1g0166191 41.818 385 209 4 425 806 137 509 5.74e-96 310
Msa0683650 MtrunA17_Chr1g0166191 35.666 443 218 9 5 392 79 509 7.42e-83 275
Msa0683650 MtrunA17_Chr3g0136561 40.741 378 215 3 434 806 527 900 4.91e-95 318
Msa0683650 MtrunA17_Chr3g0136561 32.727 440 239 8 6 392 465 900 2.24e-73 258
Msa0683650 MtrunA17_Chr6g0480561 40.426 376 208 5 435 806 102 465 3.66e-90 293
Msa0683650 MtrunA17_Chr6g0480561 32.794 433 236 10 9 392 39 465 7.76e-71 241
Msa0683650 MtrunA17_Chr7g0276241 45.973 298 140 2 514 806 2 283 4.62e-90 286
Msa0683650 MtrunA17_Chr7g0276241 41.497 294 129 6 131 392 1 283 2.19e-72 239
Msa0683650 MtrunA17_Chr2g0277841 40.533 375 208 4 435 806 86 448 7.76e-89 288
Msa0683650 MtrunA17_Chr2g0277841 35.680 412 215 9 27 394 45 450 5.80e-72 243
Msa0683650 MtrunA17_Chr2g0295781 37.913 393 229 5 416 806 69 448 3.20e-86 281
Msa0683650 MtrunA17_Chr2g0295781 32.723 437 237 8 8 396 25 452 5.38e-70 238
Msa0683650 MtrunA17_Chr2g0282281 38.462 377 215 3 417 792 132 492 2.50e-83 275
Msa0683650 MtrunA17_Chr2g0282281 31.888 392 216 5 29 378 110 492 1.88e-61 216
Msa0683650 MtrunA17_Chr7g0250661 45.270 296 148 3 514 806 2 286 2.87e-82 265
Msa0683650 MtrunA17_Chr7g0250661 40.136 294 136 6 131 392 1 286 2.15e-64 218
Msa0683650 MtrunA17_Chr1g0204301 37.766 376 218 7 435 806 120 483 6.56e-76 255
Msa0683650 MtrunA17_Chr1g0204301 36.578 339 180 8 84 392 150 483 5.70e-61 214
Msa0683650 MtrunA17_Chr3g0115041 35.733 375 225 5 435 806 121 482 3.24e-72 245
Msa0683650 MtrunA17_Chr3g0115041 36.025 322 169 7 101 392 168 482 5.26e-57 203
Msa0683650 MtrunA17_Chr3g0115021 35.733 375 225 5 435 806 121 482 3.51e-72 245
Msa0683650 MtrunA17_Chr3g0115021 36.025 322 169 7 101 392 168 482 5.36e-57 203
Msa0683650 MtrunA17_Chr6g0469631 35.733 375 225 5 435 806 120 481 4.86e-68 234
Msa0683650 MtrunA17_Chr6g0469631 36.393 305 157 7 118 392 184 481 7.33e-54 194
Msa0683650 MtrunA17_Chr6g0461631 38.828 273 153 3 548 817 3 264 2.44e-59 202
Msa0683650 MtrunA17_Chr6g0461631 36.296 270 137 5 161 403 3 264 4.15e-48 171
Msa0683650 MtrunA17_Chr4g0026871 42.979 235 119 4 576 806 1 224 5.40e-57 195
Msa0683650 MtrunA17_Chr4g0026871 38.261 230 110 5 189 392 1 224 5.81e-42 153
Msa0683650 MtrunA17_Chr4g0026791 41.053 190 100 3 576 764 1 179 1.72e-39 144
Msa0683650 MtrunA17_Chr4g0026791 37.640 178 100 3 189 361 1 172 7.58e-30 116
Msa0683650 MtrunA17_Chr4g0026721 40.127 157 80 3 653 806 11 156 1.38e-34 129
Msa0683650 MtrunA17_Chr4g0026721 35.220 159 76 3 255 392 4 156 1.08e-24 101
Msa0683650 MtrunA17_Chr4g0026861 31.818 132 86 2 421 549 83 213 1.36e-17 82.4
Msa0683650 MtrunA17_Chr4g0026861 24.675 154 101 1 19 157 50 203 1.15e-15 77.0
Msa0683650 MtrunA17_Chr6g0461621 35.115 131 81 3 422 549 89 218 2.11e-17 82.4
Msa0683650 MtrunA17_Chr6g0461621 29.747 158 89 4 18 157 55 208 3.95e-17 81.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0683650 AT2G28630.2 72.447 421 109 3 420 834 54 473 0.0 629
Msa0683650 AT2G28630.2 62.061 456 118 8 19 420 19 473 0.0 569
Msa0683650 AT2G28630.1 72.447 421 109 3 420 834 54 473 0.0 629
Msa0683650 AT2G28630.1 62.061 456 118 8 19 420 19 473 0.0 569
Msa0683650 AT1G07720.2 71.934 424 108 4 420 834 97 518 0.0 621
Msa0683650 AT1G07720.2 61.905 462 121 7 14 420 57 518 0.0 568
Msa0683650 AT1G07720.1 71.934 424 108 4 420 834 54 475 0.0 620
Msa0683650 AT1G07720.1 61.905 462 121 7 14 420 14 475 0.0 567
Msa0683650 AT5G04530.1 54.815 405 173 3 422 823 58 455 1.82e-165 488
Msa0683650 AT5G04530.1 46.517 445 179 9 17 409 18 455 1.43e-138 419
Msa0683650 AT1G01120.1 42.157 408 211 7 411 808 133 525 1.68e-106 338
Msa0683650 AT1G01120.1 37.731 432 204 11 13 392 105 523 4.87e-92 300
Msa0683650 AT2G16280.1 42.455 391 211 4 420 808 131 509 1.77e-101 324
Msa0683650 AT2G16280.1 35.927 437 216 8 3 392 88 507 8.26e-85 280
Msa0683650 AT1G25450.1 42.933 375 200 4 434 806 121 483 1.16e-100 322
Msa0683650 AT1G25450.1 35.253 434 225 7 6 392 59 483 2.37e-86 283
Msa0683650 AT1G19440.1 42.328 378 198 5 434 806 149 511 1.58e-100 322
Msa0683650 AT1G19440.1 35.374 441 225 11 3 392 80 511 1.37e-82 274
Msa0683650 AT2G46720.1 41.688 391 210 5 422 806 84 462 3.86e-100 319
Msa0683650 AT2G46720.1 34.086 443 229 8 2 392 31 462 4.48e-84 276
Msa0683650 AT4G34510.1 42.480 379 201 4 434 808 119 484 5.62e-99 317
Msa0683650 AT4G34510.1 36.667 420 207 8 22 392 73 482 9.02e-83 274
Msa0683650 AT1G04220.1 41.206 398 211 6 421 806 126 512 9.31e-99 318
Msa0683650 AT1G04220.1 34.852 439 220 11 9 392 85 512 6.71e-81 270
Msa0683650 AT1G68530.1 41.333 375 206 4 434 806 126 488 3.65e-98 315
Msa0683650 AT1G68530.1 34.562 434 228 7 6 392 64 488 3.14e-83 275
Msa0683650 AT5G43760.1 41.960 398 207 7 421 806 132 517 1.16e-97 315
Msa0683650 AT5G43760.1 35.476 420 208 10 27 392 107 517 4.27e-80 268
Msa0683650 AT2G26640.1 41.582 392 211 5 421 806 121 500 3.53e-97 313
Msa0683650 AT2G26640.1 33.787 441 231 9 6 394 71 502 7.90e-81 269
Msa0683650 AT2G15090.1 40.741 378 202 6 435 806 115 476 5.63e-94 303
Msa0683650 AT2G15090.1 32.579 442 240 6 5 394 43 478 2.21e-79 265
Msa0683650 AT3G10280.1 41.005 378 199 5 434 806 97 455 5.91e-94 303
Msa0683650 AT3G10280.1 33.562 438 231 8 2 392 31 455 4.50e-81 268
Msa0683650 AT4G34250.1 41.645 377 200 6 435 806 123 484 7.48e-94 303
Msa0683650 AT4G34250.1 34.459 444 224 8 4 394 57 486 2.32e-81 270
Msa0683650 AT4G34520.1 40.617 389 215 5 425 808 112 489 1.66e-93 303
Msa0683650 AT4G34520.1 34.434 424 225 10 9 392 77 487 4.40e-73 248
Msa0683650 AT2G26250.1 36.983 411 240 4 414 806 138 547 2.09e-91 299
Msa0683650 AT2G26250.1 32.019 431 228 7 27 392 117 547 1.85e-72 248
Msa0683650 AT5G49070.1 39.733 375 212 5 435 806 89 452 3.84e-87 285
Msa0683650 AT5G49070.1 33.793 435 234 13 4 392 26 452 1.13e-67 232
Msa0683650 AT1G71160.1 36.029 408 235 6 412 806 51 445 7.81e-86 281
Msa0683650 AT1G71160.1 34.729 406 212 10 32 392 48 445 6.67e-71 241
Msa0683650 AT3G52160.2 34.366 355 190 3 438 792 16 327 2.60e-69 233
Msa0683650 AT3G52160.2 29.738 343 177 4 63 378 22 327 1.46e-49 178
Msa0683650 AT3G52160.1 33.163 392 208 4 412 792 92 440 8.38e-69 235
Msa0683650 AT3G52160.1 27.512 418 221 6 3 378 63 440 5.58e-51 186
Msa0683650 AT1G68530.2 38.326 227 139 1 434 660 126 351 1.06e-50 183
Msa0683650 AT1G68530.2 32.646 291 166 4 6 269 64 351 5.27e-49 178
Msa0683650 AT5G49070.2 32.444 225 151 1 435 659 89 312 3.07e-33 131
Msa0683650 AT5G49070.2 29.310 290 177 8 4 268 26 312 4.73e-29 119

Find 142 sgRNAs with CRISPR-Local

Find 456 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTACATATGTTTCCTAATT+TGG 0.070695 4_4:-46406024 Msa0683650:CDS
AAGTCTTTGTTGACAATTTA+AGG 0.088298 4_4:-46400448 Msa0683650:CDS
TTCTCTTATTGGCAAAATTT+TGG 0.091113 4_4:+46405184 None:intergenic
TTCCCTTGTTGGCAAAATTT+TGG 0.124989 4_4:+46400415 None:intergenic
AAGAGAACTTCTTAGGTTTC+TGG 0.130095 4_4:-46405168 Msa0683650:CDS
AATCAGAAGAACGGAAAATT+TGG 0.138421 4_4:-46405897 Msa0683650:CDS
AATCAGAAGAACCAAGAATT+TGG 0.151534 4_4:-46401128 Msa0683650:intron
AACCTAAGAAGTTCTCTTAT+TGG 0.180213 4_4:+46405173 None:intergenic
AAGAAATAAGTTAGCACTTT+TGG 0.201713 4_4:-46400738 Msa0683650:CDS
GATCGAATAGTTTCCAAATT+AGG 0.205177 4_4:+46406011 None:intergenic
CGGCCTTCAAAGATGTTTCT+TGG 0.209523 4_4:+46401037 None:intergenic
TCAAATGCAATAGTTGCTTA+TGG 0.231406 4_4:-46400055 Msa0683650:CDS
TCAAATGCAATAGTTGCTTA+TGG 0.231406 4_4:-46404818 Msa0683650:CDS
AAGAAACAAGTTAGCACTTT+TGG 0.238756 4_4:-46405507 Msa0683650:CDS
GTATAATTGTTGCCTTAAAA+AGG 0.254484 4_4:-46405300 Msa0683650:CDS
TCATTGCCAGTGTACCAATT+TGG 0.263580 4_4:+46400695 None:intergenic
TCATTGCCAGGATACCAATT+TGG 0.281930 4_4:+46405464 None:intergenic
CTCATCTATACCCAAATTCT+TGG 0.300676 4_4:+46401117 None:intergenic
TAATTATCCACCAAAGTCTT+TGG 0.310010 4_4:-46399982 Msa0683650:CDS
GGTAGCTTGTGGTATGTGTT+AGG 0.324055 4_4:-46400146 Msa0683650:CDS
AACCTAAGCAATTCCCTTGT+TGG 0.324150 4_4:+46400404 None:intergenic
TACCTTCACTTAAGAAAATC+AGG 0.326135 4_4:+46404657 None:intergenic
TGCCAATAAGAGAACTTCTT+AGG 0.328413 4_4:-46405175 Msa0683650:CDS
GACAACAAGAACATCGATTT+CGG 0.346319 4_4:+46405685 None:intergenic
GTCTTTGGTCAATTCTTTCA+TGG 0.348215 4_4:-46399967 Msa0683650:CDS
CTCAAAGCCATTGTAAGTTC+TGG 0.351294 4_4:-46401082 Msa0683650:CDS
CAGAGTCTCTTAGTCCAAAT+TGG 0.351890 4_4:-46405478 Msa0683650:CDS
GTCGTTGATCAATCCTTTCA+TGG 0.352995 4_4:-46404730 Msa0683650:CDS
CAGAGTCTCTTAGTCCAAAT+TGG 0.358921 4_4:-46400709 Msa0683650:CDS
CGATGTAGTGTCATCCTTGC+TGG 0.365030 4_4:+46400188 None:intergenic
CAAATGCAATAGTTGCTTAT+GGG 0.367150 4_4:-46400054 Msa0683650:CDS
CAAATGCAATAGTTGCTTAT+GGG 0.367150 4_4:-46404817 Msa0683650:CDS
AGATCCCGTCGTTCAGTGTT+GGG 0.368292 4_4:+46401005 None:intergenic
AGTCTTTGTTGACAATTTAA+GGG 0.369626 4_4:-46400447 Msa0683650:CDS
CGATGTAGTGTCATTCTTGC+TGG 0.370734 4_4:+46404951 None:intergenic
AAAGCAGTGATTGATGGAAT+TGG 0.371201 4_4:-46400245 Msa0683650:CDS
AAAGCAGTGATTGATGGAAT+TGG 0.371201 4_4:-46405008 Msa0683650:CDS
ATCAGAAGAACCAAGAATTT+GGG 0.381600 4_4:-46401127 Msa0683650:intron
TCACCATTGAATTTCAAAAC+TGG 0.383289 4_4:-46400299 Msa0683650:CDS
AATCCTTTCATGGAGAAGTA+TGG 0.384841 4_4:-46404720 Msa0683650:CDS
GGAAACTATTCGATCAAAAG+AGG 0.392901 4_4:-46406003 Msa0683650:CDS
AGAATGACACTACATCGTTT+TGG 0.409603 4_4:-46404945 Msa0683650:CDS
ATCAGAAGAACGGAAAATTT+GGG 0.410971 4_4:-46405896 Msa0683650:CDS
TACCTTCACTTGAGAAAGTC+AGG 0.413091 4_4:+46399894 None:intergenic
GGAGGAAAAGCAGTGATTGA+TGG 0.414329 4_4:-46400251 Msa0683650:CDS
GGAGGAAAAGCAGTGATTGA+TGG 0.414329 4_4:-46405014 Msa0683650:CDS
AGGATGACACTACATCGTTT+TGG 0.417938 4_4:-46400182 Msa0683650:CDS
CAGAACTTACAATGGCTTTG+AGG 0.424498 4_4:+46401083 None:intergenic
TGCCAACAAGGGAATTGCTT+AGG 0.432387 4_4:-46400406 Msa0683650:CDS
TTACAATTGTTGCATTCAAA+AGG 0.434595 4_4:-46400531 Msa0683650:CDS
AGTTCTTCTAAGTCTTCAAC+TGG 0.436663 4_4:-46400341 Msa0683650:CDS
CCTAGCATTCTATCTTGTGT+TGG 0.442413 4_4:+46405941 None:intergenic
GCACCAAGAAACATCTTTGA+AGG 0.448515 4_4:-46401040 Msa0683650:CDS
TGTTGGAGATGCAAATGTTT+GGG 0.448918 4_4:-46404781 Msa0683650:CDS
TGTTGGAGATGCAAATGTTT+GGG 0.458617 4_4:-46400018 Msa0683650:CDS
ACTTGCACTACAACCCATTC+CGG 0.459457 4_4:+46400802 None:intergenic
CTTTCATGGAGAAGTATAGT+TGG 0.468430 4_4:-46399953 Msa0683650:CDS
CTTAGTCCAAATTGGTATCC+TGG 0.469589 4_4:-46405470 Msa0683650:CDS
TGGGAAGTGATGAGAGATGT+TGG 0.470845 4_4:-46400035 Msa0683650:CDS
GAAGATGAGCAGGGTAGGCT+TGG 0.474253 4_4:-46400509 Msa0683650:CDS
GCCGGAACGGAAAAGACAAT+TGG 0.476811 4_4:+46400655 None:intergenic
AAAGAATTGACCAAAGACTT+TGG 0.478011 4_4:+46399972 None:intergenic
TTTCATGGAGAAGTATAGTT+GGG 0.478641 4_4:-46399952 Msa0683650:CDS
ATGTTGGAGATGCAAATGTT+TGG 0.481221 4_4:-46404782 Msa0683650:CDS
ACAATTATACGAGTCATCTC+TGG 0.483305 4_4:+46405313 None:intergenic
CATTCAAAAGGAAGATGAGC+AGG 0.483405 4_4:-46400519 Msa0683650:CDS
GTGTACAATCTCACCGGAAT+GGG 0.485997 4_4:-46400815 Msa0683650:CDS
ATGTTGGAGATGCAAATGTT+TGG 0.486269 4_4:-46400019 Msa0683650:CDS
GTGTACAATATCACTGGAAT+GGG 0.488754 4_4:-46405584 Msa0683650:CDS
GCCATTGTAAGTTCTGGAAT+CGG 0.490745 4_4:-46401076 Msa0683650:CDS
AGTGTACAATATCACTGGAA+TGG 0.492125 4_4:-46405585 Msa0683650:CDS
CTTGTGTTGGCTTGTAACAT+TGG 0.492229 4_4:+46405954 None:intergenic
AAGCTCTTGTTGCTACCAAT+GGG 0.506575 4_4:+46405234 None:intergenic
GTAGCTTGTGGTATGTGTTA+GGG 0.507371 4_4:-46400145 Msa0683650:CDS
AAAGCTCTTGTTGCTACCAA+TGG 0.508160 4_4:+46405233 None:intergenic
GAGATCCCGTCGTTCAGTGT+TGG 0.510257 4_4:+46401004 None:intergenic
TGCAAAACTCCTTGCAAGAT+CGG 0.511558 4_4:-46405720 Msa0683650:CDS
AAGAACATCGATTTCGGAAG+GGG 0.511755 4_4:+46405691 None:intergenic
ATCATTGATCTATCATTGCC+AGG 0.516044 4_4:+46405452 None:intergenic
AAAATCAGGAAGTTCAAAGT+TGG 0.518001 4_4:+46404671 None:intergenic
TCAGTGTTGGTGATGCTTCG+CGG 0.523210 4_4:+46405786 None:intergenic
AGTGTACAATCTCACCGGAA+TGG 0.523311 4_4:-46400816 Msa0683650:CDS
TTTATGATAAGCTTTGGTGC+TGG 0.524017 4_4:-46400080 Msa0683650:CDS
TTTATGATAAGCTTTGGTGC+TGG 0.524017 4_4:-46404843 Msa0683650:CDS
TCAGTGTTGGGGATGATTCG+CGG 0.524299 4_4:+46401017 None:intergenic
AGTTCTAAGTCTTCTAGTGG+TGG 0.525949 4_4:-46405104 Msa0683650:intron
GTAAAAGTGTACAATATCAC+TGG 0.527763 4_4:-46405590 Msa0683650:CDS
GTGGTATGTGTTAGGGTACA+TGG 0.531641 4_4:-46400138 Msa0683650:CDS
AATCTAATATGTAACACTCT+TGG 0.533209 4_4:+46405978 None:intergenic
CATCCCCAACACTGAACGAC+GGG 0.534315 4_4:-46401009 Msa0683650:CDS
GAATCGCGCAACCGCCGGAA+CGG 0.534316 4_4:+46400642 None:intergenic
CAAAAGAATGGCACAACCAC+CGG 0.537261 4_4:+46405406 None:intergenic
CATCACCAACACTGAACGAC+GGG 0.538304 4_4:-46405778 Msa0683650:CDS
CGACGATAAAGAAGGAAGAA+TGG 0.540309 4_4:+46400877 None:intergenic
CAAAAGAATCGCGCAACCGC+CGG 0.542437 4_4:+46400637 None:intergenic
GGGAAATAGCCGATCTTGCA+AGG 0.543030 4_4:+46405711 None:intergenic
CAACCATACTTCTCCATGAA+AGG 0.546958 4_4:+46404717 None:intergenic
GCCAATGCCGCAACTTACAA+TGG 0.550333 4_4:+46405844 None:intergenic
CCAACACAAGATAGAATGCT+AGG 0.550403 4_4:-46405941 Msa0683650:CDS
TCTAAGTCTTCTAGTGGTGG+AGG 0.552416 4_4:-46405101 Msa0683650:intron
AATGATAAGCGATGATAGTG+AGG 0.553958 4_4:+46405637 None:intergenic
TCTAGTTCTAAGTCTTCTAG+TGG 0.554027 4_4:-46405107 Msa0683650:intron
AAAGGATTGATCAACGACTC+TGG 0.554712 4_4:+46404735 None:intergenic
ACACTTCTGCTGGTAGCTTG+TGG 0.556818 4_4:-46400157 Msa0683650:CDS
GAAGACGAGCATGGTACAGT+TGG 0.556957 4_4:-46405278 Msa0683650:CDS
TGGGAAGTGATGAAAGATGT+TGG 0.557628 4_4:-46404798 Msa0683650:CDS
TTCCTGACTTTCTCAAGTGA+AGG 0.560019 4_4:-46399896 None:intergenic
GAACGACGGGATCTCTGAGA+TGG 0.560538 4_4:-46400996 Msa0683650:CDS
ATGATTCGCGACGATAAAGA+AGG 0.560777 4_4:+46400869 None:intergenic
TGGCAAATTAATCAGAAGAA+CGG 0.561881 4_4:-46405906 Msa0683650:CDS
GATCCCGTCGTTCAGTGTTG+GGG 0.565462 4_4:+46401006 None:intergenic
GAAACTATTCGATCAAAAGA+GGG 0.569684 4_4:-46406002 Msa0683650:CDS
ACAAGAACGTCGATTTCTGA+AGG 0.572740 4_4:+46400920 None:intergenic
CTTAGTCCAAATTGGTACAC+TGG 0.575705 4_4:-46400701 Msa0683650:CDS
GAGATCCCGTCGTTCAGTGT+TGG 0.576756 4_4:+46405773 None:intergenic
AAAAGGAAGATGAGCAGGGT+AGG 0.584974 4_4:-46400514 Msa0683650:CDS
GAACGACGGGATCTCAGAGA+TGG 0.585890 4_4:-46405765 Msa0683650:CDS
TCTTCTAAGTCTTCAACTGG+TGG 0.587214 4_4:-46400338 Msa0683650:CDS
TAGTTGGGTCAATGAAGTTG+AGG 0.590238 4_4:-46399937 Msa0683650:CDS
GCCGATTCCAGAACTTACAA+TGG 0.592710 4_4:+46401075 None:intergenic
GGGAAATCGCTGATCTAGCA+AGG 0.595724 4_4:+46400942 None:intergenic
AATATGATCTTGAGCCAGCA+AGG 0.598452 4_4:-46400202 Msa0683650:CDS
CTTTCATGGAGAAGTATGGT+TGG 0.599046 4_4:-46404716 Msa0683650:CDS
ACAAGAACATCGATTTCGGA+AGG 0.601193 4_4:+46405689 None:intergenic
GAATTGACCAAAGACTTTGG+TGG 0.608452 4_4:+46399975 None:intergenic
CAAGAACGTCGATTTCTGAA+GGG 0.614902 4_4:+46400921 None:intergenic
CAAGAACATCGATTTCGGAA+GGG 0.615853 4_4:+46405690 None:intergenic
AAGAACGTCGATTTCTGAAG+GGG 0.625621 4_4:+46400922 None:intergenic
AACGGAAAAGACAATTGGCT+AGG 0.628055 4_4:+46400660 None:intergenic
AAGAGTCTTCTCTTGCGCCG+TGG 0.637122 4_4:+46400552 None:intergenic
CGATGATAGTGAGGGAACAG+AGG 0.637306 4_4:+46405646 None:intergenic
CAACACAAGATAGAATGCTA+GGG 0.647129 4_4:-46405940 Msa0683650:CDS
GAAACACATAAAGTAAAGAG+AGG 0.648005 4_4:+46406053 None:intergenic
TGTTTAGTCAGGACGCATCA+CGG 0.653313 4_4:-46405338 Msa0683650:intron
ATGATAAGCGATGATAGTGA+GGG 0.653702 4_4:+46405638 None:intergenic
GTAAAAGTGTACAATCTCAC+CGG 0.655315 4_4:-46400821 Msa0683650:CDS
TGGTTGGCTCAATGAAGTTG+AGG 0.662172 4_4:-46404700 Msa0683650:CDS
GGATTGATCAACGACTCTGG+TGG 0.663465 4_4:+46404738 None:intergenic
GCATCACCAACACTGAACGA+CGG 0.683718 4_4:-46405779 Msa0683650:CDS
TCATCCCCAACACTGAACGA+CGG 0.690414 4_4:-46401010 Msa0683650:CDS
ATTCAAAAGGAAGATGAGCA+GGG 0.694442 4_4:-46400518 Msa0683650:CDS
TGTTTAGTACGAACGCACCA+CGG 0.710347 4_4:-46400569 Msa0683650:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTATATATACATATATTGT+GGG - chr4_4:46401572-46401591 Msa0683650:intron 10.0%
!! ACATAAATAAAAAGAATAAA+AGG + chr4_4:46403624-46403643 None:intergenic 10.0%
!!! TATTCTTATTATTTCAATTT+TGG - chr4_4:46403853-46403872 Msa0683650:intron 10.0%
!! GTTTATATATACATATATTG+TGG - chr4_4:46401571-46401590 Msa0683650:intron 15.0%
!! TTATATATACATATATTGTG+GGG - chr4_4:46401573-46401592 Msa0683650:intron 15.0%
!!! TTAAATTCAAATTTGAAACT+TGG + chr4_4:46403652-46403671 None:intergenic 15.0%
!!! CAATATACTTTTGTTCTTTA+AGG + chr4_4:46400593-46400612 None:intergenic 20.0%
!! TATAATTTCATTCATTGTTG+TGG - chr4_4:46401328-46401347 Msa0683650:intron 20.0%
!! TAAGAAGAAGAAAAAATTGA+AGG - chr4_4:46401367-46401386 Msa0683650:intron 20.0%
!! AAGAAGAAGAAAAAATTGAA+GGG - chr4_4:46401368-46401387 Msa0683650:intron 20.0%
!!! GATGAAGAATGAAAATATTT+TGG + chr4_4:46402666-46402685 None:intergenic 20.0%
!! AGAAAATTCGTAAATTTCAT+AGG - chr4_4:46403355-46403374 Msa0683650:intron 20.0%
!! CATTGAATAAGATAAATCTT+TGG + chr4_4:46404022-46404041 None:intergenic 20.0%
!! AAAAAAAAATCGTAGGATTA+AGG + chr4_4:46404172-46404191 None:intergenic 20.0%
!! AAGACAAAAAAAAAAATCGT+AGG + chr4_4:46404179-46404198 None:intergenic 20.0%
!!! TTGTCTTATGCTATTTTATA+TGG - chr4_4:46404192-46404211 Msa0683650:intron 20.0%
!! AGATTTAATGCAAATTGTAA+AGG + chr4_4:46404305-46404324 None:intergenic 20.0%
! TGTACATATGTTTCCTAATT+TGG - chr4_4:46399936-46399955 Msa0683650:CDS 25.0%
! AATCTAATATGTAACACTCT+TGG + chr4_4:46399985-46400004 None:intergenic 25.0%
!!! TCTTTTGTTTGTCAAAAGAA+TGG + chr4_4:46400569-46400588 None:intergenic 25.0%
! GTATAATTGTTGCCTTAAAA+AGG - chr4_4:46400660-46400679 Msa0683650:CDS 25.0%
!! AGCTTTTGTTGAGAATTTAA+GGG - chr4_4:46400744-46400763 Msa0683650:CDS 25.0%
!! TCTCTTATTGGCAAAATTTT+GGG + chr4_4:46400778-46400797 None:intergenic 25.0%
!! TTCTCTTATTGGCAAAATTT+TGG + chr4_4:46400779-46400798 None:intergenic 25.0%
!!! TCACCATTGAATTTTAAAAC+TGG - chr4_4:46400898-46400917 Msa0683650:CDS 25.0%
!!! ACACCAGTTTTAAAATTCAA+TGG + chr4_4:46400904-46400923 None:intergenic 25.0%
!! AGAGTTTTTATGATAAGCTT+TGG - chr4_4:46401111-46401130 Msa0683650:CDS 25.0%
! AGAAGAAGAAAAAATTGAAG+GGG - chr4_4:46401369-46401388 Msa0683650:intron 25.0%
!! TTTTACTAGATTTCTTGACA+AGG - chr4_4:46401404-46401423 Msa0683650:intron 25.0%
! ATTATTGAAACCTTGATCAA+TGG - chr4_4:46401500-46401519 Msa0683650:intron 25.0%
! AAAGTAAACAAACTCCTTAT+TGG + chr4_4:46401533-46401552 None:intergenic 25.0%
! TCAATTTGAAGATAGTTACT+TGG - chr4_4:46401690-46401709 Msa0683650:intron 25.0%
!! TTTTTATAGTGTTCCTTCTT+GGG + chr4_4:46402089-46402108 None:intergenic 25.0%
! TCGATGTTCTATTTGTTTAT+AGG + chr4_4:46402525-46402544 None:intergenic 25.0%
!! ATTTGATTAACATTTGGGTT+TGG + chr4_4:46402757-46402776 None:intergenic 25.0%
! TCCACATTTGATTAACATTT+GGG + chr4_4:46402762-46402781 None:intergenic 25.0%
! TTCCACATTTGATTAACATT+TGG + chr4_4:46402763-46402782 None:intergenic 25.0%
! AATGTTTGTAGGAAAATAGA+AGG - chr4_4:46402802-46402821 Msa0683650:intron 25.0%
! AATGTAGAATCTTGCAAAAT+AGG - chr4_4:46403143-46403162 Msa0683650:intron 25.0%
!!! TGTAGAAGAAGATATTTTAG+AGG - chr4_4:46403300-46403319 Msa0683650:intron 25.0%
!!! TATTTTCTGTTTTAACCTTC+AGG - chr4_4:46403486-46403505 Msa0683650:intron 25.0%
! AATAAAAGGATGAATCGTTT+GGG + chr4_4:46403610-46403629 None:intergenic 25.0%
!!! TTGTGTGGATATTTTTGAAT+AGG - chr4_4:46403741-46403760 Msa0683650:intron 25.0%
!!! TTTGAATAGGTTTTGTAACA+TGG - chr4_4:46403754-46403773 Msa0683650:intron 25.0%
! CAATTGAACTCTTCTAATTT+AGG - chr4_4:46403813-46403832 Msa0683650:intron 25.0%
!! ATTTTGGACAATAATTCTGT+TGG - chr4_4:46403869-46403888 Msa0683650:intron 25.0%
! AAACATAATTGCAAAATCGT+AGG + chr4_4:46404077-46404096 None:intergenic 25.0%
!! AGTTAAAATTCCGATTTGAA+TGG - chr4_4:46404115-46404134 Msa0683650:intron 25.0%
! TAGGATTTAACCATTCAAAT+CGG + chr4_4:46404128-46404147 None:intergenic 25.0%
!!! TAATGTTTTGGAAAACCTTT+AGG + chr4_4:46404438-46404457 None:intergenic 25.0%
! GCATTTAAATGTGTTCATAA+GGG + chr4_4:46404531-46404550 None:intergenic 25.0%
! TGTACATATGTTTCCTAATT+TGG - chr4_4:46399936-46399955 Msa0683650:CDS 25.0%
! AATCTAATATGTAACACTCT+TGG + chr4_4:46399985-46400004 None:intergenic 25.0%
!! AAGAAATAAGTTAGCACTTT+TGG - chr4_4:46405222-46405241 Msa0683650:CDS 25.0%
! TTACAATTGTTGCATTCAAA+AGG - chr4_4:46405429-46405448 Msa0683650:CDS 25.0%
! AAGTCTTTGTTGACAATTTA+AGG - chr4_4:46405512-46405531 Msa0683650:CDS 25.0%
! AGTCTTTGTTGACAATTTAA+GGG - chr4_4:46405513-46405532 Msa0683650:CDS 25.0%
!! AGAGTTTTTATGATAAGCTT+TGG - chr4_4:46401111-46401130 Msa0683650:CDS 25.0%
GAAACACATAAAGTAAAGAG+AGG + chr4_4:46399910-46399929 None:intergenic 30.0%
GATCGAATAGTTTCCAAATT+AGG + chr4_4:46399952-46399971 None:intergenic 30.0%
GAAACTATTCGATCAAAAGA+GGG - chr4_4:46399958-46399977 Msa0683650:CDS 30.0%
TGGCAAATTAATCAGAAGAA+CGG - chr4_4:46400054-46400073 Msa0683650:CDS 30.0%
AATCAGAAGAACGGAAAATT+TGG - chr4_4:46400063-46400082 Msa0683650:CDS 30.0%
ATCAGAAGAACGGAAAATTT+GGG - chr4_4:46400064-46400083 Msa0683650:CDS 30.0%
! GTAAAAGTGTACAATATCAC+TGG - chr4_4:46400370-46400389 Msa0683650:CDS 30.0%
! AAGAAACAAGTTAGCACTTT+TGG - chr4_4:46400453-46400472 Msa0683650:CDS 30.0%
! TGAAATTGAAGTGTTTAGTC+AGG - chr4_4:46400611-46400630 Msa0683650:CDS 30.0%
TTTATCAAAAACTCTCCCAT+TGG - chr4_4:46400711-46400730 Msa0683650:CDS 30.0%
! GAGCTTTTGTTGAGAATTTA+AGG - chr4_4:46400743-46400762 Msa0683650:CDS 30.0%
AACCTAAGAAGTTCTCTTAT+TGG + chr4_4:46400790-46400809 None:intergenic 30.0%
GCAAAAAAGAGGCTAAAAAA+AGG - chr4_4:46401084-46401103 Msa0683650:CDS 30.0%
TCAAATGCAATAGTTGCTTA+TGG - chr4_4:46401142-46401161 Msa0683650:intron 30.0%
CAAATGCAATAGTTGCTTAT+GGG - chr4_4:46401143-46401162 Msa0683650:intron 30.0%
AAAATCAGGAAGTTCAAAGT+TGG + chr4_4:46401292-46401311 None:intergenic 30.0%
! TTCCTGATTTTCTTAAGTGA+AGG - chr4_4:46401301-46401320 Msa0683650:intron 30.0%
TACCTTCACTTAAGAAAATC+AGG + chr4_4:46401306-46401325 None:intergenic 30.0%
TCAATGGTTTATCACCAATA+AGG - chr4_4:46401516-46401535 Msa0683650:intron 30.0%
!!! GAACAGGACAATTTTAACTT+AGG - chr4_4:46401728-46401747 Msa0683650:intron 30.0%
!! TAGTTTGCTAGTTTATAGCT+AGG - chr4_4:46401777-46401796 Msa0683650:intron 30.0%
!! AGTTTGCTAGTTTATAGCTA+GGG - chr4_4:46401778-46401797 Msa0683650:intron 30.0%
TATTGATAAGAACCATGTGT+CGG + chr4_4:46401998-46402017 None:intergenic 30.0%
! CTTTTTATAGTGTTCCTTCT+TGG + chr4_4:46402090-46402109 None:intergenic 30.0%
!! AAAAGAGTACTTAGCTTCTA+AGG - chr4_4:46402105-46402124 Msa0683650:intron 30.0%
TGTCTAGAAACACATTCTTA+GGG + chr4_4:46402211-46402230 None:intergenic 30.0%
TTGTCTAGAAACACATTCTT+AGG + chr4_4:46402212-46402231 None:intergenic 30.0%
GCATTATTGTTTCATAACGT+TGG + chr4_4:46402318-46402337 None:intergenic 30.0%
! TTTTGGATTTCTTCAGAGAA+AGG + chr4_4:46402649-46402668 None:intergenic 30.0%
AAGGTTGAAATCTGAATTAG+GGG + chr4_4:46402734-46402753 None:intergenic 30.0%
GAAGGTTGAAATCTGAATTA+GGG + chr4_4:46402735-46402754 None:intergenic 30.0%
ACCCAAATGTTAATCAAATG+TGG - chr4_4:46402758-46402777 Msa0683650:intron 30.0%
! TCAAGAAGTCTTGGAAATTT+TGG + chr4_4:46402919-46402938 None:intergenic 30.0%
AAAATTTCCAAGACTTCTTG+AGG - chr4_4:46402918-46402937 Msa0683650:intron 30.0%
AAATTTCCAAGACTTCTTGA+GGG - chr4_4:46402919-46402938 Msa0683650:intron 30.0%
TGTTAGATCTCAAAACTCTT+TGG + chr4_4:46402982-46403001 None:intergenic 30.0%
!! TTTTACAACTTGTTCTACCT+TGG + chr4_4:46403076-46403095 None:intergenic 30.0%
AGAACAAGTTGTAAAATCCA+AGG - chr4_4:46403080-46403099 Msa0683650:intron 30.0%
ATAAATGGACACTAGTATTC+TGG - chr4_4:46403517-46403536 Msa0683650:intron 30.0%
GAATAAAAGGATGAATCGTT+TGG + chr4_4:46403611-46403630 None:intergenic 30.0%
CAAAAATATCCACACAAAGA+GGG + chr4_4:46403738-46403757 None:intergenic 30.0%
TCAAAAATATCCACACAAAG+AGG + chr4_4:46403739-46403758 None:intergenic 30.0%
ATTGTTGTCTTCCCTTAATT+AGG - chr4_4:46403781-46403800 Msa0683650:intron 30.0%
!! AACTCTTCTAATTTAGGTTG+TGG - chr4_4:46403819-46403838 Msa0683650:intron 30.0%
TGACACACACAAAATTGATT+TGG - chr4_4:46403964-46403983 Msa0683650:intron 30.0%
TTAACTACCATGATCATTGA+AGG + chr4_4:46404101-46404120 None:intergenic 30.0%
AAACATAATCGCAAAATCGT+AGG + chr4_4:46404147-46404166 None:intergenic 30.0%
! AGCTTTTAAACTCTCAACTA+AGG + chr4_4:46404340-46404359 None:intergenic 30.0%
CGCATTTAAATGTGTTCATA+AGG + chr4_4:46404532-46404551 None:intergenic 30.0%
!!! CTAGAGGAAGTGTTTTATAA+GGG + chr4_4:46404583-46404602 None:intergenic 30.0%
GAAGTACATAAAGTAAAGAG+AGG + chr4_4:46404679-46404698 None:intergenic 30.0%
AGGAAACATATGTACAATAG+TGG + chr4_4:46404701-46404720 None:intergenic 30.0%
GATCGTATAGTTTCCAAATT+AGG + chr4_4:46404721-46404740 None:intergenic 30.0%
GAAACTATACGATCAAAAGA+AGG - chr4_4:46404727-46404746 Msa0683650:CDS 30.0%
AATCAGAAGAACCAAGAATT+TGG - chr4_4:46404832-46404851 Msa0683650:CDS 30.0%
ATCAGAAGAACCAAGAATTT+GGG - chr4_4:46404833-46404852 Msa0683650:CDS 30.0%
!!! CAGTATGCTTCTGTTTTTTA+AGG + chr4_4:46405362-46405381 None:intergenic 30.0%
TCACCATTGAATTTCAAAAC+TGG - chr4_4:46405661-46405680 Msa0683650:CDS 30.0%
!!! ACACCAGTTTTGAAATTCAA+TGG + chr4_4:46405667-46405686 None:intergenic 30.0%
GCAAAAAAGAGGCTAAAAAA+AGG - chr4_4:46401084-46401103 Msa0683650:CDS 30.0%
TCAAATGCAATAGTTGCTTA+TGG - chr4_4:46401142-46401161 Msa0683650:intron 30.0%
CAAATGCAATAGTTGCTTAT+GGG - chr4_4:46401143-46401162 Msa0683650:intron 30.0%
TAATTATCCACCAAAGTCTT+TGG - chr4_4:46405978-46405997 Msa0683650:CDS 30.0%
AAAGAATTGACCAAAGACTT+TGG + chr4_4:46405991-46406010 None:intergenic 30.0%
! TTTCATGGAGAAGTATAGTT+GGG - chr4_4:46406008-46406027 Msa0683650:CDS 30.0%
GGAAACTATTCGATCAAAAG+AGG - chr4_4:46399957-46399976 Msa0683650:CDS 35.0%
CAACACAAGATAGAATGCTA+GGG - chr4_4:46400020-46400039 Msa0683650:CDS 35.0%
!! GACAACAAGAACATCGATTT+CGG + chr4_4:46400278-46400297 None:intergenic 35.0%
! ATGATAAGCGATGATAGTGA+GGG + chr4_4:46400325-46400344 None:intergenic 35.0%
! AATGATAAGCGATGATAGTG+AGG + chr4_4:46400326-46400345 None:intergenic 35.0%
AGTGTACAATATCACTGGAA+TGG - chr4_4:46400375-46400394 Msa0683650:CDS 35.0%
GTGTACAATATCACTGGAAT+GGG - chr4_4:46400376-46400395 Msa0683650:CDS 35.0%
ATCATTGATCTATCATTGCC+AGG + chr4_4:46400511-46400530 None:intergenic 35.0%
ACAATTATACGAGTCATCTC+TGG + chr4_4:46400650-46400669 None:intergenic 35.0%
TGCCAATAAGAGAACTTCTT+AGG - chr4_4:46400785-46400804 Msa0683650:CDS 35.0%
AAGAGAACTTCTTAGGTTTC+TGG - chr4_4:46400792-46400811 Msa0683650:CDS 35.0%
!! TCTAGTTCTAAGTCTTCTAG+TGG - chr4_4:46400853-46400872 Msa0683650:CDS 35.0%
AAAGCAGTGATTGATGGAAT+TGG - chr4_4:46400952-46400971 Msa0683650:CDS 35.0%
! AGAATGACACTACATCGTTT+TGG - chr4_4:46401015-46401034 Msa0683650:CDS 35.0%
! TTTATGATAAGCTTTGGTGC+TGG - chr4_4:46401117-46401136 Msa0683650:CDS 35.0%
ATGTTGGAGATGCAAATGTT+TGG - chr4_4:46401178-46401197 Msa0683650:intron 35.0%
TGTTGGAGATGCAAATGTTT+GGG - chr4_4:46401179-46401198 Msa0683650:intron 35.0%
AATCCTTTCATGGAGAAGTA+TGG - chr4_4:46401240-46401259 Msa0683650:intron 35.0%
AGATTTCTTGACAAGGATCA+AGG - chr4_4:46401411-46401430 Msa0683650:intron 35.0%
TGGTGATAAACCATTGATCA+AGG + chr4_4:46401513-46401532 None:intergenic 35.0%
CACTTAAAAAGAAACCAACC+AGG + chr4_4:46401600-46401619 None:intergenic 35.0%
ATTGATAAGAACCATGTGTC+GGG + chr4_4:46401997-46402016 None:intergenic 35.0%
ATGGTTCTTATCAATACCTC+TGG - chr4_4:46402002-46402021 Msa0683650:intron 35.0%
TGGTTCTTATCAATACCTCT+GGG - chr4_4:46402003-46402022 Msa0683650:intron 35.0%
! ACTTGCACCATTTGTTGATT+TGG - chr4_4:46402026-46402045 Msa0683650:intron 35.0%
!! CTTGCACCATTTGTTGATTT+GGG - chr4_4:46402027-46402046 Msa0683650:intron 35.0%
GTTAGTCCCAAATCAACAAA+TGG + chr4_4:46402036-46402055 None:intergenic 35.0%
! GATTTGGGACTAACAATGAT+TGG - chr4_4:46402042-46402061 Msa0683650:intron 35.0%
ATAACTCATAAAGCCCAAGA+AGG - chr4_4:46402073-46402092 Msa0683650:intron 35.0%
!! AGTACTTAGCTTCTAAGGTA+AGG - chr4_4:46402110-46402129 Msa0683650:intron 35.0%
!! GTGTTTCTAGACAAGAACAT+TGG - chr4_4:46402218-46402237 Msa0683650:intron 35.0%
TGCCTTCACTAACAACATTT+GGG + chr4_4:46402340-46402359 None:intergenic 35.0%
ATGCCTTCACTAACAACATT+TGG + chr4_4:46402341-46402360 None:intergenic 35.0%
GAAGTTGCAAGAGAAAAACA+TGG - chr4_4:46402400-46402419 Msa0683650:intron 35.0%
AAGAGAAAAACATGGAGCAT+CGG - chr4_4:46402408-46402427 Msa0683650:intron 35.0%
ACATCGAGAGAAAGATATAG+AGG - chr4_4:46402538-46402557 Msa0683650:intron 35.0%
CATCGAGAGAAAGATATAGA+GGG - chr4_4:46402539-46402558 Msa0683650:intron 35.0%
GACAACCAAATTATTTCCCA+AGG - chr4_4:46402615-46402634 Msa0683650:intron 35.0%
AACCAAATTATTTCCCAAGG+TGG - chr4_4:46402618-46402637 Msa0683650:intron 35.0%
AACCACCTTGGGAAATAATT+TGG + chr4_4:46402623-46402642 None:intergenic 35.0%
AGGTTGAAATCTGAATTAGG+GGG + chr4_4:46402733-46402752 None:intergenic 35.0%
GGAAGGTTGAAATCTGAATT+AGG + chr4_4:46402736-46402755 None:intergenic 35.0%
! GATTAACATTTGGGTTTGGA+AGG + chr4_4:46402753-46402772 None:intergenic 35.0%
CTATGCTGCAAAATGTTTGT+AGG - chr4_4:46402791-46402810 Msa0683650:intron 35.0%
! GAAGTCTTGGAAATTTTGGA+GGG + chr4_4:46402915-46402934 None:intergenic 35.0%
! AGAAGTCTTGGAAATTTTGG+AGG + chr4_4:46402916-46402935 None:intergenic 35.0%
! CAAAACTCTTTGGAAGGATA+TGG + chr4_4:46402972-46402991 None:intergenic 35.0%
AGATCTCAAAACTCTTTGGA+AGG + chr4_4:46402978-46402997 None:intergenic 35.0%
AGATAGAATTCACACTACCT+TGG + chr4_4:46403100-46403119 None:intergenic 35.0%
! TCAAGGAATTTTCCAACTTG+TGG + chr4_4:46403225-46403244 None:intergenic 35.0%
TTTCTTCTTTCCATGGTTTG+TGG + chr4_4:46403267-46403286 None:intergenic 35.0%
! CTTCTTGTTTCTTCTTTCCA+TGG + chr4_4:46403274-46403293 None:intergenic 35.0%
TACTAGTGTCCATTTATCAC+AGG + chr4_4:46403514-46403533 None:intergenic 35.0%
! TGCACGTTAGTTTATACTGA+CGG + chr4_4:46403685-46403704 None:intergenic 35.0%
GAGGTGATGTTGTAAAATAG+TGG + chr4_4:46403716-46403735 None:intergenic 35.0%
TGACAGTGACACCTAATTAA+GGG + chr4_4:46403795-46403814 None:intergenic 35.0%
TTGACAGTGACACCTAATTA+AGG + chr4_4:46403796-46403815 None:intergenic 35.0%
ATGTTTGCCTTCAATGATCA+TGG - chr4_4:46404091-46404110 Msa0683650:intron 35.0%
!! TTTTGGAAAACCTTTAGGTG+TGG + chr4_4:46404433-46404452 None:intergenic 35.0%
TTTATAAGGGTTGAGTGTGT+GGG + chr4_4:46404570-46404589 None:intergenic 35.0%
! TTTTATAAGGGTTGAGTGTG+TGG + chr4_4:46404571-46404590 None:intergenic 35.0%
!!! GCTAGAGGAAGTGTTTTATA+AGG + chr4_4:46404584-46404603 None:intergenic 35.0%
! AGAGTGGGGTTATAGAATTT+TGG + chr4_4:46404641-46404660 None:intergenic 35.0%
CAACACAAGATAGAATGCTA+GGG - chr4_4:46400020-46400039 Msa0683650:CDS 35.0%
CTCATCTATACCCAAATTCT+TGG + chr4_4:46404846-46404865 None:intergenic 35.0%
! GTAAAAGTGTACAATCTCAC+CGG - chr4_4:46405139-46405158 Msa0683650:CDS 35.0%
ATTCAAAAGGAAGATGAGCA+GGG - chr4_4:46405442-46405461 Msa0683650:CDS 35.0%
!! GTAGGCTTGGTTTTCATTTA+GGG - chr4_4:46405464-46405483 Msa0683650:CDS 35.0%
!!! AGACTTTTGTTGCTGCTTTT+GGG + chr4_4:46405498-46405517 None:intergenic 35.0%
!!! AAGACTTTTGTTGCTGCTTT+TGG + chr4_4:46405499-46405518 None:intergenic 35.0%
! ACCCAAAATTTTGCCAACAA+GGG - chr4_4:46405543-46405562 Msa0683650:intron 35.0%
! TCCCTTGTTGGCAAAATTTT+GGG + chr4_4:46405547-46405566 None:intergenic 35.0%
! TTCCCTTGTTGGCAAAATTT+TGG + chr4_4:46405548-46405567 None:intergenic 35.0%
AGTTCTTCTAAGTCTTCAAC+TGG - chr4_4:46405619-46405638 Msa0683650:CDS 35.0%
AAAGCAGTGATTGATGGAAT+TGG - chr4_4:46400952-46400971 Msa0683650:CDS 35.0%
! TTTATGATAAGCTTTGGTGC+TGG - chr4_4:46401117-46401136 Msa0683650:CDS 35.0%
ATGTTGGAGATGCAAATGTT+TGG - chr4_4:46401178-46401197 Msa0683650:intron 35.0%
TGTTGGAGATGCAAATGTTT+GGG - chr4_4:46401179-46401198 Msa0683650:intron 35.0%
GTCTTTGGTCAATTCTTTCA+TGG - chr4_4:46405993-46406012 Msa0683650:CDS 35.0%
! CTTTCATGGAGAAGTATAGT+TGG - chr4_4:46406007-46406026 Msa0683650:CDS 35.0%
!! CTTGTGTTGGCTTGTAACAT+TGG + chr4_4:46400009-46400028 None:intergenic 40.0%
CCTAGCATTCTATCTTGTGT+TGG + chr4_4:46400022-46400041 None:intergenic 40.0%
CCAACACAAGATAGAATGCT+AGG - chr4_4:46400019-46400038 Msa0683650:CDS 40.0%
CTCAAAGCCATTGTAAGTTG+CGG - chr4_4:46400109-46400128 Msa0683650:CDS 40.0%
TGCAAAACTCCTTGCAAGAT+CGG - chr4_4:46400240-46400259 Msa0683650:CDS 40.0%
!! AAGAACATCGATTTCGGAAG+GGG + chr4_4:46400272-46400291 None:intergenic 40.0%
!! CAAGAACATCGATTTCGGAA+GGG + chr4_4:46400273-46400292 None:intergenic 40.0%
!! ACAAGAACATCGATTTCGGA+AGG + chr4_4:46400274-46400293 None:intergenic 40.0%
CAGAGTCTCTTAGTCCAAAT+TGG - chr4_4:46400482-46400501 Msa0683650:CDS 40.0%
CTTAGTCCAAATTGGTATCC+TGG - chr4_4:46400490-46400509 Msa0683650:CDS 40.0%
TCATTGCCAGGATACCAATT+TGG + chr4_4:46400499-46400518 None:intergenic 40.0%
! CATGCTCGTCTTCCTTTTTA+AGG + chr4_4:46400675-46400694 None:intergenic 40.0%
CTTAAAAAGGAAGACGAGCA+TGG - chr4_4:46400673-46400692 Msa0683650:CDS 40.0%
AAGCTCTTGTTGCTACCAAT+GGG + chr4_4:46400729-46400748 None:intergenic 40.0%
AAAGCTCTTGTTGCTACCAA+TGG + chr4_4:46400730-46400749 None:intergenic 40.0%
!! AGTTCTAAGTCTTCTAGTGG+TGG - chr4_4:46400856-46400875 Msa0683650:CDS 40.0%
!! GATCATTTTTGCCTCCATAC+AGG - chr4_4:46400925-46400944 Msa0683650:CDS 40.0%
! TGGTAGTTTGTGGTATGTGT+TGG - chr4_4:46401050-46401069 Msa0683650:CDS 40.0%
! GGTAGTTTGTGGTATGTGTT+GGG - chr4_4:46401051-46401070 Msa0683650:CDS 40.0%
! GTAGTTTGTGGTATGTGTTG+GGG - chr4_4:46401052-46401071 Msa0683650:CDS 40.0%
GGTACATGGAAGCAAAAAAG+AGG - chr4_4:46401073-46401092 Msa0683650:CDS 40.0%
TGGGAAGTGATGAAAGATGT+TGG - chr4_4:46401162-46401181 Msa0683650:intron 40.0%
AAAGGATTGATCAACGACTC+TGG + chr4_4:46401228-46401247 None:intergenic 40.0%
GTCGTTGATCAATCCTTTCA+TGG - chr4_4:46401230-46401249 Msa0683650:intron 40.0%
CAACCATACTTCTCCATGAA+AGG + chr4_4:46401246-46401265 None:intergenic 40.0%
! CTTTCATGGAGAAGTATGGT+TGG - chr4_4:46401244-46401263 Msa0683650:intron 40.0%
ATACATATATTGTGGGGACC+TGG - chr4_4:46401579-46401598 Msa0683650:intron 40.0%
GTAGTTGTGTTAGTCAGAAC+AGG - chr4_4:46401712-46401731 Msa0683650:intron 40.0%
! AACGGACTTTGTATCCTAGT+TGG + chr4_4:46401903-46401922 None:intergenic 40.0%
GTCATTCAGTGATTCCTCAA+CGG + chr4_4:46401921-46401940 None:intergenic 40.0%
ACTTAGACCCTATCTAGACA+AGG - chr4_4:46401939-46401958 Msa0683650:intron 40.0%
GAATCCTCCTTGTCTAGATA+GGG + chr4_4:46401949-46401968 None:intergenic 40.0%
TGGGACTAACAATGATTGGA+TGG - chr4_4:46402046-46402065 Msa0683650:intron 40.0%
! GGTGGTTTCTTAGGGTTTTA+AGG + chr4_4:46402163-46402182 None:intergenic 40.0%
!! AACGTTGGTGTCAATTTGAG+TGG + chr4_4:46402303-46402322 None:intergenic 40.0%
TGCCCAAATGTTGTTAGTGA+AGG - chr4_4:46402335-46402354 Msa0683650:intron 40.0%
! AGAGAAAAACATGGAGCATC+GGG - chr4_4:46402409-46402428 Msa0683650:intron 40.0%
GGAAGAAGACCATTTGAAGA+AGG - chr4_4:46402442-46402461 Msa0683650:intron 40.0%
CTTCTTGACCCTCCATTTAA+CGG + chr4_4:46402496-46402515 None:intergenic 40.0%
AAGATATAGAGGGAGAGAGT+TGG - chr4_4:46402549-46402568 Msa0683650:intron 40.0%
AGATATAGAGGGAGAGAGTT+GGG - chr4_4:46402550-46402569 Msa0683650:intron 40.0%
GAGAAAGGTTAAACCACCTT+GGG + chr4_4:46402634-46402653 None:intergenic 40.0%
AGAGAAAGGTTAAACCACCT+TGG + chr4_4:46402635-46402654 None:intergenic 40.0%
TGTTTCGATGTATGACTCGA+GGG + chr4_4:46402704-46402723 None:intergenic 40.0%
TTGTTTCGATGTATGACTCG+AGG + chr4_4:46402705-46402724 None:intergenic 40.0%
! AACTCTTTGGAAGGATATGG+TGG + chr4_4:46402969-46402988 None:intergenic 40.0%
CATAGTCCTAGGATTCAGTA+GGG + chr4_4:46403023-46403042 None:intergenic 40.0%
TATGGACGAGTTAAGGCTTA+GGG - chr4_4:46403039-46403058 Msa0683650:intron 40.0%
TTAGGGTGGAAAACATACCA+AGG - chr4_4:46403056-46403075 Msa0683650:intron 40.0%
TGTGAATTCTATCTAGCAGC+AGG - chr4_4:46403106-46403125 Msa0683650:intron 40.0%
! ATGGTTTGTGGTGCTTGTTT+GGG + chr4_4:46403255-46403274 None:intergenic 40.0%
CATTTATCACAGGAACCTGA+AGG + chr4_4:46403504-46403523 None:intergenic 40.0%
! CTTCAGGTTCCTGTGATAAA+TGG - chr4_4:46403502-46403521 Msa0683650:intron 40.0%
! GCTGAGGGATTAGTAAAACA+TGG - chr4_4:46403550-46403569 Msa0683650:intron 40.0%
AAATATCCACACAAAGAGGG+AGG + chr4_4:46403735-46403754 None:intergenic 40.0%
CAATGTAAAGCTGTTGGATC+TGG + chr4_4:46404379-46404398 None:intergenic 40.0%
!! TGGGAAAGTATTCAAGCTAG+AGG + chr4_4:46404599-46404618 None:intergenic 40.0%
!!! TGGAGAGAGTTTTGAAGGAT+GGG + chr4_4:46404618-46404637 None:intergenic 40.0%
!! TTTGGTGGAGAGAGTTTTGA+AGG + chr4_4:46404623-46404642 None:intergenic 40.0%
! GTGGGGTTATAGAATTTTGG+TGG + chr4_4:46404638-46404657 None:intergenic 40.0%
AACTCCATTTGAGAGAGAGT+GGG + chr4_4:46404656-46404675 None:intergenic 40.0%
!! CTTGTGTTGGCTTGTAACAT+TGG + chr4_4:46400009-46400028 None:intergenic 40.0%
CCTAGCATTCTATCTTGTGT+TGG + chr4_4:46400022-46400041 None:intergenic 40.0%
CCAACACAAGATAGAATGCT+AGG - chr4_4:46400019-46400038 Msa0683650:CDS 40.0%
! CAGAACTTACAATGGCTTTG+AGG + chr4_4:46404880-46404899 None:intergenic 40.0%
CTCAAAGCCATTGTAAGTTC+TGG - chr4_4:46404878-46404897 Msa0683650:intron 40.0%
!! GCCATTGTAAGTTCTGGAAT+CGG - chr4_4:46404884-46404903 Msa0683650:intron 40.0%
GCACCAAGAAACATCTTTGA+AGG - chr4_4:46404920-46404939 Msa0683650:intron 40.0%
!! AAGAACGTCGATTTCTGAAG+GGG + chr4_4:46405041-46405060 None:intergenic 40.0%
!! CAAGAACGTCGATTTCTGAA+GGG + chr4_4:46405042-46405061 None:intergenic 40.0%
!! ACAAGAACGTCGATTTCTGA+AGG + chr4_4:46405043-46405062 None:intergenic 40.0%
CGACGATAAAGAAGGAAGAA+TGG + chr4_4:46405086-46405105 None:intergenic 40.0%
ATGATTCGCGACGATAAAGA+AGG + chr4_4:46405094-46405113 None:intergenic 40.0%
CAGAGTCTCTTAGTCCAAAT+TGG - chr4_4:46400482-46400501 Msa0683650:CDS 40.0%
CTTAGTCCAAATTGGTACAC+TGG - chr4_4:46405259-46405278 Msa0683650:CDS 40.0%
TCATTGCCAGTGTACCAATT+TGG + chr4_4:46405268-46405287 None:intergenic 40.0%
AACGGAAAAGACAATTGGCT+AGG + chr4_4:46405303-46405322 None:intergenic 40.0%
CATTCAAAAGGAAGATGAGC+AGG - chr4_4:46405441-46405460 Msa0683650:CDS 40.0%
!! GGTAGGCTTGGTTTTCATTT+AGG - chr4_4:46405463-46405482 Msa0683650:CDS 40.0%
! CACCCAAAATTTTGCCAACA+AGG - chr4_4:46405542-46405561 Msa0683650:intron 40.0%
AACCTAAGCAATTCCCTTGT+TGG + chr4_4:46405559-46405578 None:intergenic 40.0%
TCTTCTAAGTCTTCAACTGG+TGG - chr4_4:46405622-46405641 Msa0683650:CDS 40.0%
!! GATCATTTTTGCCTCCATAC+AGG - chr4_4:46400925-46400944 Msa0683650:CDS 40.0%
AATATGATCTTGAGCCAGCA+AGG - chr4_4:46400995-46401014 Msa0683650:CDS 40.0%
! AGGATGACACTACATCGTTT+TGG - chr4_4:46405778-46405797 Msa0683650:CDS 40.0%
! GTAGCTTGTGGTATGTGTTA+GGG - chr4_4:46405815-46405834 Msa0683650:intron 40.0%
GGTACATGGAAGCAAAAAAG+AGG - chr4_4:46401073-46401092 Msa0683650:CDS 40.0%
GAATTGACCAAAGACTTTGG+TGG + chr4_4:46405988-46406007 None:intergenic 40.0%
TAGTTGGGTCAATGAAGTTG+AGG - chr4_4:46406023-46406042 Msa0683650:CDS 40.0%
! ATGCTAGGGACAGAGTTTTG+TGG - chr4_4:46400034-46400053 Msa0683650:CDS 45.0%
GCGCCAAGAAATGTCATTGA+AGG - chr4_4:46400151-46400170 Msa0683650:CDS 45.0%
CGGCCTTCAATGACATTTCT+TGG + chr4_4:46400157-46400176 None:intergenic 45.0%
!! GCCAATTGTCTTTTTCGCAC+CGG - chr4_4:46400535-46400554 Msa0683650:CDS 45.0%
ACCGGTGCGAAAAAGACAAT+TGG + chr4_4:46400539-46400558 None:intergenic 45.0%
!! AATTGTCTTTTTCGCACCGG+TGG - chr4_4:46400538-46400557 Msa0683650:CDS 45.0%
CAAAAGAATGGCACAACCAC+CGG + chr4_4:46400557-46400576 None:intergenic 45.0%
TGTTTAGTCAGGACGCATCA+CGG - chr4_4:46400622-46400641 Msa0683650:CDS 45.0%
TCTAAGTCTTCTAGTGGTGG+AGG - chr4_4:46400859-46400878 Msa0683650:CDS 45.0%
! CATTTTTGCCTCCATACAGG+AGG - chr4_4:46400928-46400947 Msa0683650:CDS 45.0%
!! TCACTGCTTTTCCTCCTGTA+TGG + chr4_4:46400942-46400961 None:intergenic 45.0%
GGAGGAAAAGCAGTGATTGA+TGG - chr4_4:46400946-46400965 Msa0683650:CDS 45.0%
! CGATGTAGTGTCATTCTTGC+TGG + chr4_4:46401012-46401031 None:intergenic 45.0%
!! CGTTTTGGTAACACTTCTGC+TGG - chr4_4:46401030-46401049 Msa0683650:CDS 45.0%
ACACTTCTGCTGGTAGTTTG+TGG - chr4_4:46401040-46401059 Msa0683650:CDS 45.0%
! TGGTTGGCTCAATGAAGTTG+AGG - chr4_4:46401260-46401279 Msa0683650:intron 45.0%
ATATATTGTGGGGACCTGGT+TGG - chr4_4:46401583-46401602 Msa0683650:intron 45.0%
GGTGTATTGTACCTCAGGAT+CGG - chr4_4:46401799-46401818 Msa0683650:intron 45.0%
!! ACGAAGGGTATCGCATATCA+AGG - chr4_4:46401868-46401887 Msa0683650:intron 45.0%
CTAGGATACAAAGTCCGTTG+AGG - chr4_4:46401904-46401923 Msa0683650:intron 45.0%
TAGACCCTATCTAGACAAGG+AGG - chr4_4:46401942-46401961 Msa0683650:intron 45.0%
CGAATCCTCCTTGTCTAGAT+AGG + chr4_4:46401950-46401969 None:intergenic 45.0%
!! CGGGTAAGGGTTTTGTGTAT+TGG + chr4_4:46401978-46401997 None:intergenic 45.0%
AAGAACCATGTGTCGGGTAA+GGG + chr4_4:46401991-46402010 None:intergenic 45.0%
TAAGAACCATGTGTCGGGTA+AGG + chr4_4:46401992-46402011 None:intergenic 45.0%
AGGTCACAGGTGGTTTCTTA+GGG + chr4_4:46402171-46402190 None:intergenic 45.0%
! ACATTCTTAGGGTTTTCCCC+TGG + chr4_4:46402200-46402219 None:intergenic 45.0%
AAGAACATTGGCGTACACAG+TGG - chr4_4:46402230-46402249 Msa0683650:intron 45.0%
AGAACATTGGCGTACACAGT+GGG - chr4_4:46402231-46402250 Msa0683650:intron 45.0%
CTGAAGATGTTAGTGGAGCT+AGG + chr4_4:46402280-46402299 None:intergenic 45.0%
TGAGTGGCTGAAGATGTTAG+TGG + chr4_4:46402287-46402306 None:intergenic 45.0%
AGGCATGAATGATGTCGTAC+CGG - chr4_4:46402355-46402374 Msa0683650:intron 45.0%
AAAGTTGCCATGAGTCTCTC+CGG + chr4_4:46402377-46402396 None:intergenic 45.0%
AGAGACTCATGGCAACTTTG+AGG - chr4_4:46402378-46402397 Msa0683650:intron 45.0%
CCTTCGCTTCCTTCTTCAAA+TGG + chr4_4:46402454-46402473 None:intergenic 45.0%
CCATTTGAAGAAGGAAGCGA+AGG - chr4_4:46402451-46402470 Msa0683650:intron 45.0%
GAGCTACTCCGTTAAATGGA+GGG - chr4_4:46402485-46402504 Msa0683650:intron 45.0%
GATATAGAGGGAGAGAGTTG+GGG - chr4_4:46402551-46402570 Msa0683650:intron 45.0%
ACCTCCATAACTAGTCACAG+AGG - chr4_4:46402587-46402606 Msa0683650:intron 45.0%
CCTCCATAACTAGTCACAGA+GGG - chr4_4:46402588-46402607 Msa0683650:intron 45.0%
TTTCCAAGACTTCTTGAGGG+TGG - chr4_4:46402922-46402941 Msa0683650:intron 45.0%
CACTAACCCTACTGAATCCT+AGG - chr4_4:46403014-46403033 Msa0683650:intron 45.0%
CCATAGTCCTAGGATTCAGT+AGG + chr4_4:46403024-46403043 None:intergenic 45.0%
CCTACTGAATCCTAGGACTA+TGG - chr4_4:46403021-46403040 Msa0683650:intron 45.0%
CTTAACTCGTCCATAGTCCT+AGG + chr4_4:46403034-46403053 None:intergenic 45.0%
CTAGGACTATGGACGAGTTA+AGG - chr4_4:46403032-46403051 Msa0683650:intron 45.0%
CTATGGACGAGTTAAGGCTT+AGG - chr4_4:46403038-46403057 Msa0683650:intron 45.0%
ATTCTATCTAGCAGCAGGTC+AGG - chr4_4:46403111-46403130 Msa0683650:intron 45.0%
ATAGGATTGAGCATGTGAGC+TGG - chr4_4:46403161-46403180 Msa0683650:intron 45.0%
TAGGATTGAGCATGTGAGCT+GGG - chr4_4:46403162-46403181 Msa0683650:intron 45.0%
! CATGGTTTGTGGTGCTTGTT+TGG + chr4_4:46403256-46403275 None:intergenic 45.0%
CAAACAAGCACCACAAACCA+TGG - chr4_4:46403254-46403273 Msa0683650:intron 45.0%
GTGTGTCAATGTCCCTTAGT+AGG + chr4_4:46403952-46403971 None:intergenic 45.0%
CGATTAGTGTTGCGATTGCA+CGG - chr4_4:46404262-46404281 Msa0683650:intron 45.0%
GCTGCACAATGTAAAGCTGT+TGG + chr4_4:46404385-46404404 None:intergenic 45.0%
GCAGCTACTGCATATGATCT+AGG - chr4_4:46404403-46404422 Msa0683650:intron 45.0%
!!! GTGGAGAGAGTTTTGAAGGA+TGG + chr4_4:46404619-46404638 None:intergenic 45.0%
TAACCCCACTCTCTCTCAAA+TGG - chr4_4:46404649-46404668 Msa0683650:intron 45.0%
ACTCCATTTGAGAGAGAGTG+GGG + chr4_4:46404655-46404674 None:intergenic 45.0%
GAACTCCATTTGAGAGAGAG+TGG + chr4_4:46404657-46404676 None:intergenic 45.0%
! ATGCTAGGGACTGAGTTTTG+TGG - chr4_4:46404803-46404822 Msa0683650:CDS 45.0%
! GCCGATTCCAGAACTTACAA+TGG + chr4_4:46404888-46404907 None:intergenic 45.0%
CGGCCTTCAAAGATGTTTCT+TGG + chr4_4:46404926-46404945 None:intergenic 45.0%
AGTGTACAATCTCACCGGAA+TGG - chr4_4:46405144-46405163 Msa0683650:CDS 45.0%
GTGTACAATCTCACCGGAAT+GGG - chr4_4:46405145-46405164 Msa0683650:CDS 45.0%
ACTTGCACTACAACCCATTC+CGG + chr4_4:46405161-46405180 None:intergenic 45.0%
! GCCAATTGTCTTTTCCGTTC+CGG - chr4_4:46405304-46405323 Msa0683650:CDS 45.0%
! AATTGTCTTTTCCGTTCCGG+CGG - chr4_4:46405307-46405326 Msa0683650:CDS 45.0%
TGTTTAGTACGAACGCACCA+CGG - chr4_4:46405391-46405410 Msa0683650:CDS 45.0%
AAAAGGAAGATGAGCAGGGT+AGG - chr4_4:46405446-46405465 Msa0683650:CDS 45.0%
TGCCAACAAGGGAATTGCTT+AGG - chr4_4:46405554-46405573 Msa0683650:intron 45.0%
! CATTTTTGCCTCCATACAGG+AGG - chr4_4:46400928-46400947 Msa0683650:CDS 45.0%
!! TCACTGCTTTTCCTCCTGTA+TGG + chr4_4:46400942-46400961 None:intergenic 45.0%
GGAGGAAAAGCAGTGATTGA+TGG - chr4_4:46400946-46400965 Msa0683650:CDS 45.0%
!! CGTTTTGGTAACACTTCTGC+TGG - chr4_4:46401030-46401049 Msa0683650:CDS 45.0%
! GGTAGCTTGTGGTATGTGTT+AGG - chr4_4:46405814-46405833 Msa0683650:intron 45.0%
GTGGTATGTGTTAGGGTACA+TGG - chr4_4:46405822-46405841 Msa0683650:intron 45.0%
TGGGAAGTGATGAGAGATGT+TGG - chr4_4:46405925-46405944 Msa0683650:CDS 45.0%
!!! ATAAAAATATTTTAATGTTT+TGG + chr4_4:46404450-46404469 None:intergenic 5.0%
GCCATTGTAAGTTGCGGCAT+TGG - chr4_4:46400115-46400134 Msa0683650:CDS 50.0%
GCCAATGCCGCAACTTACAA+TGG + chr4_4:46400119-46400138 None:intergenic 50.0%
!! TCAGTGTTGGTGATGCTTCG+CGG + chr4_4:46400177-46400196 None:intergenic 50.0%
GCATCACCAACACTGAACGA+CGG - chr4_4:46400181-46400200 Msa0683650:CDS 50.0%
CATCACCAACACTGAACGAC+GGG - chr4_4:46400182-46400201 Msa0683650:CDS 50.0%
GGGAAATAGCCGATCTTGCA+AGG + chr4_4:46400252-46400271 None:intergenic 50.0%
! CGATGATAGTGAGGGAACAG+AGG + chr4_4:46400317-46400336 None:intergenic 50.0%
GAAGACGAGCATGGTACAGT+TGG - chr4_4:46400682-46400701 Msa0683650:CDS 50.0%
!! CTGCTTTTCCTCCTGTATGG+AGG + chr4_4:46400939-46400958 None:intergenic 50.0%
GTGGTATGTGTTGGGGTACA+TGG - chr4_4:46401059-46401078 Msa0683650:CDS 50.0%
GGATTGATCAACGACTCTGG+TGG + chr4_4:46401225-46401244 None:intergenic 50.0%
GCTAGGGTGTATTGTACCTC+AGG - chr4_4:46401794-46401813 Msa0683650:intron 50.0%
GTGCTTGATGTCCATCGTCA+GGG + chr4_4:46401827-46401846 None:intergenic 50.0%
AGTGCTTGATGTCCATCGTC+AGG + chr4_4:46401828-46401847 None:intergenic 50.0%
! ACGATGGACATCAAGCACTG+CGG - chr4_4:46401829-46401848 Msa0683650:intron 50.0%
ATGCGATACCCTTCGTCCTT+GGG + chr4_4:46401864-46401883 None:intergenic 50.0%
TATGCGATACCCTTCGTCCT+TGG + chr4_4:46401865-46401884 None:intergenic 50.0%
CAAGGTCAAGCAAGCCAACT+AGG - chr4_4:46401886-46401905 Msa0683650:intron 50.0%
CAAAACCCTTACCCGACACA+TGG - chr4_4:46401983-46402002 Msa0683650:intron 50.0%
ACAAATGGTGCAAGTCCCAG+AGG + chr4_4:46402021-46402040 None:intergenic 50.0%
CAGGTCACAGGTGGTTTCTT+AGG + chr4_4:46402172-46402191 None:intergenic 50.0%
GAACATTGGCGTACACAGTG+GGG - chr4_4:46402232-46402251 Msa0683650:intron 50.0%
!! GAAGGAAGCGAAGGCACTAA+AGG - chr4_4:46402460-46402479 Msa0683650:intron 50.0%
GGAGGAGCTACTCCGTTAAA+TGG - chr4_4:46402481-46402500 Msa0683650:intron 50.0%
GGAGCTACTCCGTTAAATGG+AGG - chr4_4:46402484-46402503 Msa0683650:intron 50.0%
GAGAGAGTTGGGGCAAGAAA+TGG - chr4_4:46402561-46402580 Msa0683650:intron 50.0%
! CCCTCTGTGACTAGTTATGG+AGG + chr4_4:46402591-46402610 None:intergenic 50.0%
! CCACCCTCTGTGACTAGTTA+TGG + chr4_4:46402594-46402613 None:intergenic 50.0%
CCATAACTAGTCACAGAGGG+TGG - chr4_4:46402591-46402610 Msa0683650:intron 50.0%
TCGATGTATGACTCGAGGGT+TGG + chr4_4:46402700-46402719 None:intergenic 50.0%
GAGCGACAAAAGCCACAAGT+TGG - chr4_4:46403210-46403229 Msa0683650:intron 50.0%
GTTTGTGGTGCTTGTTTGGG+AGG + chr4_4:46403252-46403271 None:intergenic 50.0%
!! CTAGTATTCTGGAGTTCGCG+CGG - chr4_4:46403528-46403547 Msa0683650:intron 50.0%
ACATCACCTCCCTCTTTGTG+TGG - chr4_4:46403726-46403745 Msa0683650:intron 50.0%
TTTCCATACCAGCGAGTGCT+TGG - chr4_4:46403926-46403945 Msa0683650:intron 50.0%
TCTAGGTGTGCCACACCTAA+AGG - chr4_4:46404420-46404439 Msa0683650:intron 50.0%
ATAAGGGTTGAGTGTGTGGG+TGG + chr4_4:46404567-46404586 None:intergenic 50.0%
! TCAGTGTTGGGGATGATTCG+CGG + chr4_4:46404946-46404965 None:intergenic 50.0%
TCATCCCCAACACTGAACGA+CGG - chr4_4:46404950-46404969 Msa0683650:CDS 50.0%
AGATCCCGTCGTTCAGTGTT+GGG + chr4_4:46400189-46400208 None:intergenic 50.0%
GGGAAATCGCTGATCTAGCA+AGG + chr4_4:46405021-46405040 None:intergenic 50.0%
GCCGGAACGGAAAAGACAAT+TGG + chr4_4:46405308-46405327 None:intergenic 50.0%
!! CTGCTTTTCCTCCTGTATGG+AGG + chr4_4:46400939-46400958 None:intergenic 50.0%
CGATGTAGTGTCATCCTTGC+TGG + chr4_4:46405775-46405794 None:intergenic 50.0%
ACACTTCTGCTGGTAGCTTG+TGG - chr4_4:46405803-46405822 Msa0683650:intron 50.0%
GAGATCCCGTCGTTCAGTGT+TGG + chr4_4:46400190-46400209 None:intergenic 55.0%
GAACGACGGGATCTCAGAGA+TGG - chr4_4:46400195-46400214 Msa0683650:CDS 55.0%
! CGATGGACATCAAGCACTGC+GGG - chr4_4:46401830-46401849 Msa0683650:intron 55.0%
! CTTAGGGTTTTCCCCTGGTC+AGG + chr4_4:46402195-46402214 None:intergenic 55.0%
TGTCGTACCGGAGAGACTCA+TGG - chr4_4:46402367-46402386 Msa0683650:intron 55.0%
!! GGAAGCGAAGGCACTAAAGG+AGG - chr4_4:46402463-46402482 Msa0683650:intron 55.0%
CCTCCACCCTCAAGAAGTCT+TGG + chr4_4:46402928-46402947 None:intergenic 55.0%
CCAAGACTTCTTGAGGGTGG+AGG - chr4_4:46402925-46402944 Msa0683650:intron 55.0%
GGACGAGTTAAGGCTTAGGG+TGG - chr4_4:46403042-46403061 Msa0683650:intron 55.0%
CTTGTTTGGGAGGTGGGTCA+AGG + chr4_4:46403242-46403261 None:intergenic 55.0%
GTGGTGCTTGTTTGGGAGGT+GGG + chr4_4:46403248-46403267 None:intergenic 55.0%
TGTGGTGCTTGTTTGGGAGG+TGG + chr4_4:46403249-46403268 None:intergenic 55.0%
TTAGTAGGCCAAGCACTCGC+TGG + chr4_4:46403937-46403956 None:intergenic 55.0%
AGCGAGTGCTTGGCCTACTA+AGG - chr4_4:46403936-46403955 Msa0683650:intron 55.0%
GCGAGTGCTTGGCCTACTAA+GGG - chr4_4:46403937-46403956 Msa0683650:intron 55.0%
CATCCCCAACACTGAACGAC+GGG - chr4_4:46404951-46404970 Msa0683650:CDS 55.0%
GATCCCGTCGTTCAGTGTTG+GGG + chr4_4:46400188-46400207 None:intergenic 55.0%
GAGATCCCGTCGTTCAGTGT+TGG + chr4_4:46400190-46400209 None:intergenic 55.0%
! GAACGACGGGATCTCTGAGA+TGG - chr4_4:46404964-46404983 Msa0683650:CDS 55.0%
CAAAAGAATCGCGCAACCGC+CGG + chr4_4:46405326-46405345 None:intergenic 55.0%
AAGAGTCTTCTCTTGCGCCG+TGG + chr4_4:46405411-46405430 None:intergenic 55.0%
GAAGATGAGCAGGGTAGGCT+TGG - chr4_4:46405451-46405470 Msa0683650:CDS 55.0%
!! TCGTCAGGGTACCGATCCTG+AGG + chr4_4:46401813-46401832 None:intergenic 60.0%
CAGGATCGGTACCCTGACGA+TGG - chr4_4:46401813-46401832 Msa0683650:intron 60.0%
TACCCTTCGTCCTTGGGCGT+GGG + chr4_4:46401858-46401877 None:intergenic 60.0%
ATACCCTTCGTCCTTGGGCG+TGG + chr4_4:46401859-46401878 None:intergenic 60.0%
ACCTGTGACCTGCCTGACCA+GGG - chr4_4:46402180-46402199 Msa0683650:intron 60.0%
!! GGAGCATCGGGCAAGACATG+AGG - chr4_4:46402421-46402440 Msa0683650:intron 60.0%
AGGCCAAGCACTCGCTGGTA+TGG + chr4_4:46403932-46403951 None:intergenic 60.0%
CACCCACGCCCAAGGACGAA+GGG - chr4_4:46401853-46401872 Msa0683650:intron 65.0%
CTGGTCAGGCAGGTCACAGG+TGG + chr4_4:46402181-46402200 None:intergenic 65.0%
CACCTGTGACCTGCCTGACC+AGG - chr4_4:46402179-46402198 Msa0683650:intron 65.0%
CCTGTGACCTGCCTGACCAG+GGG - chr4_4:46402181-46402200 Msa0683650:intron 65.0%
! GGGTTTTCCCCTGGTCAGGC+AGG + chr4_4:46402191-46402210 None:intergenic 65.0%
!! TTCTGGAGTTCGCGCGGCTG+AGG - chr4_4:46403534-46403553 Msa0683650:intron 65.0%
! TCTGGAGTTCGCGCGGCTGA+GGG - chr4_4:46403535-46403554 Msa0683650:intron 65.0%
GAATCGCGCAACCGCCGGAA+CGG + chr4_4:46405321-46405340 None:intergenic 65.0%
GCACCCACGCCCAAGGACGA+AGG - chr4_4:46401852-46401871 Msa0683650:intron 70.0%
CCCCTGGTCAGGCAGGTCAC+AGG + chr4_4:46402184-46402203 None:intergenic 70.0%
ACTGCGGGCACCCACGCCCA+AGG - chr4_4:46401845-46401864 Msa0683650:intron 75.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 46399899 46406083 46399899 ID=Msa0683650;Name=Msa0683650
chr4_4 mRNA 46399899 46406083 46399899 ID=Msa0683650-mRNA-1;Parent=Msa0683650;Name=Msa0683650-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0|0|0|1|0|0|7|0|837
chr4_4 exon 46405858 46406083 46405858 ID=Msa0683650-mRNA-1:exon:11449;Parent=Msa0683650-mRNA-1
chr4_4 exon 46405573 46405809 46405573 ID=Msa0683650-mRNA-1:exon:11448;Parent=Msa0683650-mRNA-1
chr4_4 exon 46405362 46405557 46405362 ID=Msa0683650-mRNA-1:exon:11447;Parent=Msa0683650-mRNA-1
chr4_4 exon 46405139 46405349 46405139 ID=Msa0683650-mRNA-1:exon:11446;Parent=Msa0683650-mRNA-1
chr4_4 exon 46404931 46405117 46404931 ID=Msa0683650-mRNA-1:exon:11445;Parent=Msa0683650-mRNA-1
chr4_4 exon 46404666 46404876 46404666 ID=Msa0683650-mRNA-1:exon:11444;Parent=Msa0683650-mRNA-1
chr4_4 exon 46399899 46401144 46399899 ID=Msa0683650-mRNA-1:exon:11443;Parent=Msa0683650-mRNA-1
chr4_4 CDS 46405858 46406083 46405858 ID=Msa0683650-mRNA-1:cds;Parent=Msa0683650-mRNA-1
chr4_4 CDS 46405573 46405809 46405573 ID=Msa0683650-mRNA-1:cds;Parent=Msa0683650-mRNA-1
chr4_4 CDS 46405362 46405557 46405362 ID=Msa0683650-mRNA-1:cds;Parent=Msa0683650-mRNA-1
chr4_4 CDS 46405139 46405349 46405139 ID=Msa0683650-mRNA-1:cds;Parent=Msa0683650-mRNA-1
chr4_4 CDS 46404931 46405117 46404931 ID=Msa0683650-mRNA-1:cds;Parent=Msa0683650-mRNA-1
chr4_4 CDS 46404666 46404876 46404666 ID=Msa0683650-mRNA-1:cds;Parent=Msa0683650-mRNA-1
chr4_4 CDS 46399899 46401144 46399899 ID=Msa0683650-mRNA-1:cds;Parent=Msa0683650-mRNA-1
Gene Sequence

>Msa0683650

ATGGAGTTCCTCTCTTTACTTTATGTGTTTCTAGCATTGTACATATGTTTCCTAATTTGGAAACTATTCGATCAAAAGAGGGACCAAGAGTGTTACATATTAGATTACCAATGTTACAAGCCAACACAAGATAGAATGCTAGGGACAGAGTTTTGTGGCAAATTAATCAGAAGAACGGAAAATTTGGGTCTAAATGAGTACAAATTTCTGCTCAAAGCCATTGTAAGCCGCGAAGCATCACCAACACTGAACGACGGGATCTCAGAGATGGAAGAGTTTTTCGACGACAGCATTGCAAAACTCCTTGCAAGATCGGCTATTTCCCCTTCCGAAATCGATGTTCTTGTTGTCAACATCTCAATGTTCACCTCTGTTCCCTCACTATCATCGCTTATCATTAATCGTTACAAAATGAGACACGACGTAAAAGTGTACAATATCACTGGAATGGGTTGTAGTGCTAATATTGTTAAAAACATTTTCAAATCACAAAGAAACAAGTTAGCACTTTTGGTCACATCAGAGTCTCTTAGTCCAAATTGGTATCCTGGCAATGATAGATCAATGATCTTAGCCAATTGTCTTTTTCGCACCGGTGGTTGTGCCATTCTTTTGACAAACAAAAGATCCTTAAAGAACAAAAGTATATTGAAATTGAAGACGCATCACGGCGCCAGAGATGACTCGTATAATTGTTGCCTTAAAAAGGAAGACGAGCATGGTACAGTTGGTTTTTATTTATCAAAAACTCTCCCATTGGTAGCAACAAGAGCTTTTGTTGAGAATTTAAGGGTAATTTCACCCAAAATTTTGCCAATAAGAGAACTTCTTAGGTTTCTGGTTGTATCACTTTTTAAGAAACTCAAGATATCTTCTAGTGGTGGAGGAACAAGAACTACTAAATCACCATTGAATTTTAAAACTGGTGTTGATCATTTTTGCCTCCATACAGGAGGAAAAGCAGTGATTGATGGAATTGGAATGAGTTTAGATCTAAGTGAATATGATCTTGAGCCAGCAAGAATGACACTACATCGTTTTGGTAACACTTCTGCTGGTGATAGAGTTTTTATGATAAGCTTTGGTGCTGGATTCAAATGCAATAGTTGCTTATGGGAAGTGATGAAAGATGTTGGAGATGCAAATGTTTGGGAAGATTGTATTGATGATTATCCACCAGAGTCGTTGATCAATCCTTTCATGGAGAAGTATGGTTGGCTCAATGAAGTTGAGGATGCAACCAACTTTGAACTTCCTGATTTTCTTAAAAGAACCAAGAATTTGGGTATAGATGAGTACAAATTTCTCCTCAAAGCCATTGTAAGTTCTGGAATCGGCGAGCAAACTTACGCACCAAGAAACATCTTTGAAGGCCGCGAATCATCCCCAACACTGAACGACGGGATCTCTGAGATGGAAGAGTTTTTCAACGACAGCATTGCAAAACTCCTTGCTAGATCAGCGATTTCCCCTTCAGAAATCGACGTTCTTGTCGTCAACATCTCAATGCTCGCCATTCTTCCTTCTTTATCGTCGCGAATCATTAATCGTTACAAAATGAGACACGACGTAAAAGTGTACAATCTCACCGGAATGGGTTGTAGTGCAAGTCTTATTTCATTAGACATTGTTAAAAACATTTTCAAATCACAAAGAAATAAGTTAGCACTTTTGGTCACATCAGAGTCTCTTAGTCCAAATTGGTACACTGGCAATGATAGATCAATGATCCTAGCCAATTGTCTTTTCCGTTCCGGCGGTTGCGCGATTCTTTTGACAAATAAAAGATCCTTAAAAAACAGAAGCATACTGAAATTGAAGTGTTTAGTACGAACGCACCACGGCGCAAGAGAAGACTCTTACAATTGTTGCATTCAAAAGGAAGATGAGCAGGGTAGGCTTGGTTTTCATTTAGGGAAAACTCTCCCAAAAGCAGCAACAAAAGTCTTTGTTGACAATTTAAGGGTAATTTCACCCAAAATTTTGCCAACAAGGGAATTGCTTAGGTTTCTTCTTGTGTTACTTTTCAAGAAACTTAAAATAGCTACTAGTTCTTCTAAGTCTTCAACTGGTGGAACAATATCTACAAAATCACCATTGAATTTCAAAACTGGTGTTGATCATTTTTGCCTCCATACAGGAGGAAAAGCAGTGATTGATGGAATTGGAATGAGTTTAGATCTAAGTGAATATGATCTTGAGCCAGCAAGGATGACACTACATCGTTTTGGTAACACTTCTGCTGGTAGCTTGTGGTATGTGTTAGGGTACATGGAAGCAAAAAAGAGGCTAAAAAAAGGTGATAGAGTTTTTATGATAAGCTTTGGTGCTGGATTCAAATGCAATAGTTGCTTATGGGAAGTGATGAGAGATGTTGGAGATGCAAATGTTTGGGAAGATTGTATTGATAATTATCCACCAAAGTCTTTGGTCAATTCTTTCATGGAGAAGTATAGTTGGGTCAATGAAGTTGAGGATGTAAACAACTATGATCTTCCTGACTTTCTCAAGTGA
Protein sequence

>Msa0683650

MEFLSLLYVFLALYICFLIWKLFDQKRDQECYILDYQCYKPTQDRMLGTEFCGKLIRRTENLGLNEYKFLLKAIVSREASPTLNDGISEMEEFFDDSIAKLLARSAISPSEIDVLVVNISMFTSVPSLSSLIINRYKMRHDVKVYNITGMGCSANIVKNIFKSQRNKLALLVTSESLSPNWYPGNDRSMILANCLFRTGGCAILLTNKRSLKNKSILKLKTHHGARDDSYNCCLKKEDEHGTVGFYLSKTLPLVATRAFVENLRVISPKILPIRELLRFLVVSLFKKLKISSSGGGTRTTKSPLNFKTGVDHFCLHTGGKAVIDGIGMSLDLSEYDLEPARMTLHRFGNTSAGDRVFMISFGAGFKCNSCLWEVMKDVGDANVWEDCIDDYPPESLINPFMEKYGWLNEVEDATNFELPDFLKRTKNLGIDEYKFLLKAIVSSGIGEQTYAPRNIFEGRESSPTLNDGISEMEEFFNDSIAKLLARSAISPSEIDVLVVNISMLAILPSLSSRIINRYKMRHDVKVYNLTGMGCSASLISLDIVKNIFKSQRNKLALLVTSESLSPNWYTGNDRSMILANCLFRSGGCAILLTNKRSLKNRSILKLKCLVRTHHGAREDSYNCCIQKEDEQGRLGFHLGKTLPKAATKVFVDNLRVISPKILPTRELLRFLLVLLFKKLKIATSSSKSSTGGTISTKSPLNFKTGVDHFCLHTGGKAVIDGIGMSLDLSEYDLEPARMTLHRFGNTSAGSLWYVLGYMEAKKRLKKGDRVFMISFGAGFKCNSCLWEVMRDVGDANVWEDCIDNYPPKSLVNSFMEKYSWVNEVEDVNNYDLPDFLK*