AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0643800

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0643800 MtrunA17_Chr4g0030581 96.163 417 15 1 422 837 56 472 0.0 822
Msa0643800 MtrunA17_Chr4g0030581 77.542 472 57 5 1 423 1 472 0.0 724
Msa0643800 MtrunA17_Chr4g0030591 84.778 473 22 5 1 423 1 473 0.0 775
Msa0643800 MtrunA17_Chr4g0030591 84.726 419 62 1 421 837 55 473 0.0 717
Msa0643800 MtrunA17_Chr4g0030601 88.702 416 40 1 422 837 56 464 0.0 766
Msa0643800 MtrunA17_Chr4g0030601 77.682 466 59 5 1 423 1 464 0.0 733
Msa0643800 MtrunA17_Chr2g0327721 72.816 412 106 4 426 832 60 470 0.0 626
Msa0643800 MtrunA17_Chr2g0327721 62.845 471 121 8 1 418 1 470 0.0 597
Msa0643800 MtrunA17_Chr1g0212951 56.585 410 168 2 424 823 59 468 9.89e-171 502
Msa0643800 MtrunA17_Chr1g0212951 46.352 466 189 7 5 409 3 468 1.01e-145 438
Msa0643800 MtrunA17_Chr7g0276251 44.020 393 198 6 422 806 147 525 6.93e-107 339
Msa0643800 MtrunA17_Chr7g0276251 38.785 428 209 9 12 392 104 525 3.19e-94 305
Msa0643800 MtrunA17_Chr5g0423521 41.867 375 204 4 434 806 125 487 1.07e-100 321
Msa0643800 MtrunA17_Chr5g0423521 35.831 427 215 9 16 392 70 487 4.21e-84 277
Msa0643800 MtrunA17_Chr1g0188051 42.347 392 208 5 421 806 124 503 5.26e-99 317
Msa0643800 MtrunA17_Chr1g0188051 36.782 435 218 8 6 392 78 503 1.57e-86 285
Msa0643800 MtrunA17_Chr1g0209881 40.800 375 208 4 434 806 125 487 1.24e-98 316
Msa0643800 MtrunA17_Chr1g0209881 33.803 426 226 8 14 392 71 487 1.16e-81 271
Msa0643800 MtrunA17_Chr4g0035081 40.409 391 216 5 421 806 121 499 1.02e-97 314
Msa0643800 MtrunA17_Chr4g0035081 34.537 443 230 8 3 394 68 501 8.98e-85 279
Msa0643800 MtrunA17_Chr4g0063011 41.425 379 207 4 431 806 125 491 1.66e-96 310
Msa0643800 MtrunA17_Chr4g0063011 34.004 447 221 9 9 410 70 487 4.92e-82 272
Msa0643800 MtrunA17_Chr2g0306781 42.494 393 207 6 418 806 19 396 3.01e-96 306
Msa0643800 MtrunA17_Chr2g0306781 37.534 373 194 6 50 392 33 396 2.22e-78 259
Msa0643800 MtrunA17_Chr1g0166191 41.558 385 210 4 425 806 137 509 8.29e-96 309
Msa0643800 MtrunA17_Chr1g0166191 35.747 442 217 9 6 392 80 509 2.50e-83 276
Msa0643800 MtrunA17_Chr3g0136561 41.005 378 214 3 434 806 527 900 2.42e-95 318
Msa0643800 MtrunA17_Chr3g0136561 32.727 440 239 8 6 392 465 900 7.14e-74 259
Msa0643800 MtrunA17_Chr7g0276241 45.973 298 140 2 514 806 2 283 5.71e-90 286
Msa0643800 MtrunA17_Chr7g0276241 41.156 294 130 6 131 392 1 283 3.48e-72 238
Msa0643800 MtrunA17_Chr6g0480561 40.426 376 208 5 435 806 102 465 5.92e-90 292
Msa0643800 MtrunA17_Chr6g0480561 32.794 433 236 10 9 392 39 465 3.72e-71 241
Msa0643800 MtrunA17_Chr2g0277841 40.800 375 207 4 435 806 86 448 4.95e-89 289
Msa0643800 MtrunA17_Chr2g0277841 35.194 412 217 9 27 394 45 450 1.90e-71 242
Msa0643800 MtrunA17_Chr2g0295781 37.913 393 229 5 416 806 69 448 3.30e-86 281
Msa0643800 MtrunA17_Chr2g0295781 32.494 437 238 8 8 396 25 452 5.55e-70 238
Msa0643800 MtrunA17_Chr2g0282281 38.727 377 214 3 417 792 132 492 1.17e-83 276
Msa0643800 MtrunA17_Chr2g0282281 31.888 392 216 5 29 378 110 492 6.66e-62 217
Msa0643800 MtrunA17_Chr7g0250661 45.270 296 148 3 514 806 2 286 3.05e-82 265
Msa0643800 MtrunA17_Chr7g0250661 40.136 294 136 6 131 392 1 286 9.71e-65 218
Msa0643800 MtrunA17_Chr1g0204301 37.766 376 218 7 435 806 120 483 8.13e-76 255
Msa0643800 MtrunA17_Chr1g0204301 36.578 339 180 8 84 392 150 483 1.65e-61 216
Msa0643800 MtrunA17_Chr3g0115041 35.733 375 225 5 435 806 121 482 3.58e-72 245
Msa0643800 MtrunA17_Chr3g0115041 36.025 322 169 7 101 392 168 482 1.70e-57 204
Msa0643800 MtrunA17_Chr3g0115021 35.733 375 225 5 435 806 121 482 4.72e-72 244
Msa0643800 MtrunA17_Chr3g0115021 36.025 322 169 7 101 392 168 482 2.09e-57 204
Msa0643800 MtrunA17_Chr6g0469631 35.733 375 225 5 435 806 120 481 6.02e-68 233
Msa0643800 MtrunA17_Chr6g0469631 36.393 305 157 7 118 392 184 481 2.27e-54 196
Msa0643800 MtrunA17_Chr6g0461631 38.828 273 153 3 548 817 3 264 2.62e-59 202
Msa0643800 MtrunA17_Chr6g0461631 36.296 270 137 5 161 403 3 264 1.87e-48 172
Msa0643800 MtrunA17_Chr4g0026871 42.979 235 119 4 576 806 1 224 5.98e-57 195
Msa0643800 MtrunA17_Chr4g0026871 38.261 230 110 5 189 392 1 224 3.27e-42 154
Msa0643800 MtrunA17_Chr4g0026791 41.053 190 100 3 576 764 1 179 1.62e-39 144
Msa0643800 MtrunA17_Chr4g0026791 37.640 178 100 3 189 361 1 172 3.18e-30 117
Msa0643800 MtrunA17_Chr4g0026721 40.127 157 80 3 653 806 11 156 1.41e-34 129
Msa0643800 MtrunA17_Chr4g0026721 35.220 159 76 3 255 392 4 156 5.33e-25 102
Msa0643800 MtrunA17_Chr4g0026861 31.818 132 86 2 421 549 83 213 1.77e-17 82.0
Msa0643800 MtrunA17_Chr4g0026861 24.675 154 101 1 19 157 50 203 1.28e-15 76.6
Msa0643800 MtrunA17_Chr6g0461621 35.115 131 81 3 422 549 89 218 2.73e-17 82.0
Msa0643800 MtrunA17_Chr6g0461621 29.747 158 89 4 18 157 55 208 4.35e-17 81.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0643800 AT2G28630.2 72.684 421 108 3 420 834 54 473 0.0 629
Msa0643800 AT2G28630.2 61.623 456 120 8 19 420 19 473 0.0 566
Msa0643800 AT2G28630.1 72.684 421 108 3 420 834 54 473 0.0 629
Msa0643800 AT2G28630.1 61.623 456 120 8 19 420 19 473 0.0 566
Msa0643800 AT1G07720.2 71.934 424 108 4 420 834 97 518 0.0 621
Msa0643800 AT1G07720.2 61.472 462 123 7 14 420 57 518 0.0 565
Msa0643800 AT1G07720.1 71.934 424 108 4 420 834 54 475 0.0 620
Msa0643800 AT1G07720.1 61.472 462 123 7 14 420 14 475 0.0 564
Msa0643800 AT5G04530.1 55.062 405 172 3 422 823 58 455 1.58e-165 488
Msa0643800 AT5G04530.1 46.292 445 180 9 17 409 18 455 2.15e-138 419
Msa0643800 AT1G01120.1 41.912 408 212 7 411 808 133 525 3.37e-106 337
Msa0643800 AT1G01120.1 37.731 432 204 11 13 392 105 523 1.90e-92 301
Msa0643800 AT2G16280.1 42.455 391 211 4 420 808 131 509 2.50e-101 324
Msa0643800 AT2G16280.1 35.308 439 227 8 1 392 79 507 5.34e-85 281
Msa0643800 AT1G19440.1 42.328 378 198 5 434 806 149 511 1.36e-100 322
Msa0643800 AT1G19440.1 35.374 441 225 11 3 392 80 511 1.98e-83 276
Msa0643800 AT1G25450.1 42.667 375 201 4 434 806 121 483 1.44e-100 321
Msa0643800 AT1G25450.1 35.253 434 225 7 6 392 59 483 5.25e-87 285
Msa0643800 AT2G46720.1 41.688 391 210 5 422 806 84 462 5.36e-100 319
Msa0643800 AT2G46720.1 33.860 443 230 8 2 392 31 462 1.42e-83 275
Msa0643800 AT1G04220.1 41.206 398 211 6 421 806 126 512 7.01e-99 318
Msa0643800 AT1G04220.1 34.452 447 228 11 1 392 76 512 2.44e-82 274
Msa0643800 AT4G34510.1 42.216 379 202 4 434 808 119 484 1.08e-98 316
Msa0643800 AT4G34510.1 36.667 420 207 8 22 392 73 482 5.31e-83 275
Msa0643800 AT1G68530.1 41.067 375 207 4 434 806 126 488 7.46e-98 314
Msa0643800 AT1G68530.1 34.562 434 228 7 6 392 64 488 1.21e-83 276
Msa0643800 AT5G43760.1 41.960 398 207 7 421 806 132 517 1.70e-97 314
Msa0643800 AT5G43760.1 34.312 443 228 10 4 392 84 517 1.49e-80 269
Msa0643800 AT2G26640.1 41.837 392 210 5 421 806 121 500 1.84e-97 313
Msa0643800 AT2G26640.1 33.710 442 232 9 5 394 70 502 1.27e-81 271
Msa0643800 AT2G15090.1 40.741 378 202 6 435 806 115 476 4.96e-94 303
Msa0643800 AT2G15090.1 32.653 441 239 6 6 394 44 478 7.86e-80 266
Msa0643800 AT4G34250.1 41.645 377 200 6 435 806 123 484 7.63e-94 303
Msa0643800 AT4G34250.1 34.521 449 228 8 3 394 47 486 1.62e-81 271
Msa0643800 AT3G10280.1 41.005 378 199 5 434 806 97 455 9.37e-94 302
Msa0643800 AT3G10280.1 33.333 438 232 8 2 392 31 455 1.58e-80 267
Msa0643800 AT4G34520.1 41.071 392 209 6 425 808 112 489 1.79e-93 303
Msa0643800 AT4G34520.1 34.434 424 225 10 9 392 77 487 2.02e-73 249
Msa0643800 AT2G26250.1 36.740 411 241 4 414 806 138 547 4.71e-91 298
Msa0643800 AT2G26250.1 31.057 454 247 8 5 392 94 547 9.92e-73 249
Msa0643800 AT5G49070.1 39.733 375 212 5 435 806 89 452 5.89e-87 284
Msa0643800 AT5G49070.1 33.256 430 233 13 9 392 31 452 4.04e-65 225
Msa0643800 AT1G71160.1 36.275 408 234 6 412 806 51 445 5.20e-86 281
Msa0643800 AT1G71160.1 34.483 406 213 10 32 392 48 445 8.34e-71 241
Msa0643800 AT3G52160.2 34.648 355 189 3 438 792 16 327 1.80e-69 233
Msa0643800 AT3G52160.2 29.738 343 177 4 63 378 22 327 6.68e-50 179
Msa0643800 AT3G52160.1 33.418 392 207 4 412 792 92 440 6.77e-69 235
Msa0643800 AT3G52160.1 27.512 418 221 6 3 378 63 440 5.58e-51 186
Msa0643800 AT1G68530.2 37.885 227 140 1 434 660 126 351 1.66e-50 182
Msa0643800 AT1G68530.2 32.646 291 166 4 6 269 64 351 4.46e-49 178
Msa0643800 AT5G49070.2 32.444 225 151 1 435 659 89 312 3.44e-33 131
Msa0643800 AT5G49070.2 29.123 285 174 8 9 268 31 312 3.05e-28 116

Find 145 sgRNAs with CRISPR-Local

Find 450 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTACATATGTTTCCTAATT+TGG 0.070695 4_3:+47113874 Msa0643800:CDS
AAGTCTTTGTTGACAATTTA+AGG 0.088298 4_3:+47119386 Msa0643800:CDS
TTCTCTTATTGGCAAAATTT+TGG 0.091113 4_3:-47114714 None:intergenic
TTCCCTTGTTGGCAAAATTT+TGG 0.124989 4_3:-47119419 None:intergenic
AAGAGAACTTCTTAGGTTTC+TGG 0.130095 4_3:+47114730 Msa0643800:CDS
AATCAGAAGAACGGAAAATT+TGG 0.138421 4_3:+47114001 Msa0643800:CDS
AATCAGAAGAACCAAGAATT+TGG 0.151534 4_3:+47118706 Msa0643800:intron
AACCTAAGAAGTTCTCTTAT+TGG 0.180213 4_3:-47114725 None:intergenic
AAGAAATAAGTTAGCACTTT+TGG 0.201713 4_3:+47119096 Msa0643800:CDS
GATCGAATAGTTTCCAAATT+AGG 0.205177 4_3:-47113887 None:intergenic
TCAAATGCAATAGTTGCTTA+TGG 0.231406 4_3:+47115080 Msa0643800:CDS
TCAAATGCAATAGTTGCTTA+TGG 0.231406 4_3:+47119779 Msa0643800:CDS
CGGCCTTCAAAGACGTTTCT+TGG 0.235577 4_3:-47118797 None:intergenic
GTATAATTGTTGCCTTAAAA+AGG 0.254484 4_3:+47114598 Msa0643800:CDS
TCATTGCCAGTGTACCAATT+TGG 0.263580 4_3:-47119139 None:intergenic
TCATTGCCAGGATACCAATT+TGG 0.281930 4_3:-47114434 None:intergenic
AAGAAACAAGGTAGCACTTT+TGG 0.299398 4_3:+47114391 Msa0643800:CDS
CTCATCTATACCCAAATTCT+TGG 0.300676 4_3:-47118717 None:intergenic
TAATTATCCACCAAAGTCTT+TGG 0.310010 4_3:+47119852 Msa0643800:CDS
GGTAGCTTGTGGTATGTGTT+AGG 0.324055 4_3:+47119688 Msa0643800:CDS
AACCTAAGCAATTCCCTTGT+TGG 0.324150 4_3:-47119430 None:intergenic
TACCTTCACTTAAGAAAATC+AGG 0.326135 4_3:-47115241 None:intergenic
TGCCAATAAGAGAACTTCTT+AGG 0.328413 4_3:+47114723 Msa0643800:CDS
GACAACAAGAACATCGATTT+CGG 0.346319 4_3:-47114213 None:intergenic
CGATGTAGTGTCATTCTTGC+TGG 0.347763 4_3:-47114947 None:intergenic
GTCTTTGGTCAATTCTTTCA+TGG 0.348215 4_3:+47119867 Msa0643800:CDS
CTCAAAGCCATTGTAAGTTC+TGG 0.351294 4_3:+47118752 Msa0643800:CDS
CAGAGTCTCTTAGTCCAAAT+TGG 0.351890 4_3:+47114420 Msa0643800:CDS
GTCGTTGATCAATCCTTTCA+TGG 0.352995 4_3:+47115168 Msa0643800:CDS
CAGAGTCTCTTAGTCCAAAT+TGG 0.358921 4_3:+47119125 Msa0643800:CDS
CGATGTAGTGTCATCCTTGC+TGG 0.365030 4_3:-47119646 None:intergenic
CAAATGCAATAGTTGCTTAT+GGG 0.367150 4_3:+47115081 Msa0643800:CDS
CAAATGCAATAGTTGCTTAT+GGG 0.367150 4_3:+47119780 Msa0643800:CDS
AGATCCCGTCGTTCAGTGTT+GGG 0.368292 4_3:-47118829 None:intergenic
AGTCTTTGTTGACAATTTAA+GGG 0.369626 4_3:+47119387 Msa0643800:CDS
AAAGCAGTGATTGATGGAAT+TGG 0.371201 4_3:+47114890 Msa0643800:CDS
AAAGCAGTGATTGATGGAAT+TGG 0.371201 4_3:+47119589 Msa0643800:CDS
ATCAGAAGAACCAAGAATTT+GGG 0.381600 4_3:+47118707 Msa0643800:intron
TCACCATTGAATTTCAAAAC+TGG 0.383289 4_3:+47119535 Msa0643800:CDS
AATCCTTTCATGGAGAAGTA+TGG 0.384841 4_3:+47115178 Msa0643800:CDS
AGAGTCTTTATGATAAGCTT+TGG 0.385184 4_3:+47119748 Msa0643800:CDS
GGAAACTATTCGATCAAAAG+AGG 0.392901 4_3:+47113895 Msa0643800:CDS
AGAATGACACTACATCGTTT+TGG 0.409603 4_3:+47114953 Msa0643800:CDS
ATCAGAAGAACGGAAAATTT+GGG 0.410971 4_3:+47114002 Msa0643800:CDS
TACCTTCACTTGAGAAAGTC+AGG 0.413091 4_3:-47119940 None:intergenic
GGAGGAAAAGCAGTGATTGA+TGG 0.414329 4_3:+47114884 Msa0643800:CDS
GGAGGAAAAGCAGTGATTGA+TGG 0.414329 4_3:+47119583 Msa0643800:CDS
AGGATGACACTACATCGTTT+TGG 0.417938 4_3:+47119652 Msa0643800:CDS
CAGAACTTACAATGGCTTTG+AGG 0.424498 4_3:-47118751 None:intergenic
TGCCAACAAGGGAATTGCTT+AGG 0.432387 4_3:+47119428 Msa0643800:CDS
TTACAATTGTTGCATTCAAA+AGG 0.434595 4_3:+47119303 Msa0643800:CDS
AGTTCTTCTAAGTCTTCAAC+TGG 0.436663 4_3:+47119493 Msa0643800:CDS
CCTAGCATTCTATCTTGTGT+TGG 0.442413 4_3:-47113957 None:intergenic
GCACCAAGAAACGTCTTTGA+AGG 0.447631 4_3:+47118794 Msa0643800:CDS
TGTTGGAGATGCAAATGTTT+GGG 0.448918 4_3:+47115117 Msa0643800:CDS
TGTTGGAGATGCAAATGTTT+GGG 0.458617 4_3:+47119816 Msa0643800:CDS
CTTTCATGGAGAAGTATAGT+TGG 0.468430 4_3:+47119881 Msa0643800:CDS
CTTAGTCCAAATTGGTATCC+TGG 0.469589 4_3:+47114428 Msa0643800:CDS
TGGGAAGTGATGAGAGATGT+TGG 0.470845 4_3:+47119799 Msa0643800:CDS
AGTGTACAATCTCACGGGAA+TGG 0.472105 4_3:+47119018 Msa0643800:CDS
GAAGATGAGCAGGGTAGGCT+TGG 0.474253 4_3:+47119325 Msa0643800:CDS
GCCGGAACGGAAAAGACAAT+TGG 0.476811 4_3:-47119179 None:intergenic
AAAGAATTGACCAAAGACTT+TGG 0.478011 4_3:-47119862 None:intergenic
TTTCATGGAGAAGTATAGTT+GGG 0.478641 4_3:+47119882 Msa0643800:CDS
ATGTTGGAGATGCAAATGTT+TGG 0.481221 4_3:+47115116 Msa0643800:CDS
ACAATTATACGAGTCATCTC+TGG 0.483305 4_3:-47114585 None:intergenic
CATTCAAAAGGAAGATGAGC+AGG 0.483405 4_3:+47119315 Msa0643800:CDS
GTGTACAATCTCACGGGAAT+GGG 0.484833 4_3:+47119019 Msa0643800:CDS
ATGTTGGAGATGCAAATGTT+TGG 0.486269 4_3:+47119815 Msa0643800:CDS
GTGTACAATATCACTGGAAT+GGG 0.488754 4_3:+47114314 Msa0643800:CDS
GCCATTGTAAGTTCTGGAAT+CGG 0.490745 4_3:+47118758 Msa0643800:CDS
AGTGTACAATATCACTGGAA+TGG 0.492125 4_3:+47114313 Msa0643800:CDS
CTTGTGTTGGCTTGTAACAT+TGG 0.492229 4_3:-47113944 None:intergenic
TTTATGATAAGCTTTGGTGC+TGG 0.494845 4_3:+47115055 Msa0643800:CDS
TTTATGATAAGCTTTGGTGC+TGG 0.499750 4_3:+47119754 Msa0643800:CDS
AAGCTCTTGTTGCTACCAAT+GGG 0.506575 4_3:-47114664 None:intergenic
GTAGCTTGTGGTATGTGTTA+GGG 0.507371 4_3:+47119689 Msa0643800:CDS
AAAGCTCTTGTTGCTACCAA+TGG 0.508160 4_3:-47114665 None:intergenic
GAGATCCCGTCGTTCAGTGT+TGG 0.510257 4_3:-47118830 None:intergenic
TGCAAAACTCCTTGCAAGAT+CGG 0.511558 4_3:+47114178 Msa0643800:CDS
AAGAACATCGATTTCGGAAG+GGG 0.511755 4_3:-47114207 None:intergenic
ATCATTGATCTATCATTGCC+AGG 0.516044 4_3:-47114446 None:intergenic
AAAATCAGGAAGTTCAAAGT+TGG 0.518001 4_3:-47115227 None:intergenic
TCAGTGTTGGTGATGCTTCG+CGG 0.523210 4_3:-47114112 None:intergenic
GAAACACATAAAGTAAATAG+AGG 0.524059 4_3:-47113845 None:intergenic
TCAGTGTTGGGGATGATTCG+CGG 0.524299 4_3:-47118817 None:intergenic
AGTTCTAAGTCTTCTAGTGG+TGG 0.525949 4_3:+47114794 Msa0643800:intron
GTAAAAGTGTACAATATCAC+TGG 0.527763 4_3:+47114308 Msa0643800:CDS
GTGGTATGTGTTAGGGTACA+TGG 0.531641 4_3:+47119696 Msa0643800:CDS
AATCTAATATGTAACACTCT+TGG 0.533209 4_3:-47113920 None:intergenic
CATCCCCAACACTGAACGAC+GGG 0.534315 4_3:+47118825 Msa0643800:CDS
GAATCGCGCAACCGCCGGAA+CGG 0.534316 4_3:-47119192 None:intergenic
CAAAAGAATGGCACAACCAC+CGG 0.537261 4_3:-47114492 None:intergenic
CATCACCAACACTGAACGAC+GGG 0.538304 4_3:+47114120 Msa0643800:CDS
CGACGATAAAGAAGGAAGAA+TGG 0.540309 4_3:-47118957 None:intergenic
CAAAAGAATCGCGCAACCGC+CGG 0.542437 4_3:-47119197 None:intergenic
GGGAAATAGCCGATCTTGCA+AGG 0.543030 4_3:-47114187 None:intergenic
CAACCATACTTCTCCATGAA+AGG 0.546958 4_3:-47115181 None:intergenic
GCCAATGCCGCAACTTACAA+TGG 0.550333 4_3:-47114054 None:intergenic
CCAACACAAGATAGAATGCT+AGG 0.550403 4_3:+47113957 Msa0643800:CDS
TCTAAGTCTTCTAGTGGTGG+AGG 0.552416 4_3:+47114797 Msa0643800:intron
AATGATAAGCGATGATAGTG+AGG 0.553958 4_3:-47114261 None:intergenic
TCTAGTTCTAAGTCTTCTAG+TGG 0.554027 4_3:+47114791 Msa0643800:intron
AAAGGATTGATCAACGACTC+TGG 0.554712 4_3:-47115163 None:intergenic
ACACTTCTGCTGGTAGCTTG+TGG 0.556818 4_3:+47119677 Msa0643800:CDS
GAAGACGAGCATGGTACGGT+TGG 0.556957 4_3:+47114620 Msa0643800:CDS
TGGGAAGTGATGAAAGATGT+TGG 0.557628 4_3:+47115100 Msa0643800:CDS
TTCCTGACTTTCTCAAGTGA+AGG 0.560019 4_3:+47119938 Msa0643800:CDS
GAACGACGGGATCTCTGAGA+TGG 0.560538 4_3:+47118838 Msa0643800:CDS
ATGATTCGCGACGATAAAGA+AGG 0.561187 4_3:-47118965 None:intergenic
TGGCAAATTAATCAGAAGAA+CGG 0.561881 4_3:+47113992 Msa0643800:CDS
GATCCCGTCGTTCAGTGTTG+GGG 0.565462 4_3:-47118828 None:intergenic
GAAACTATTCGATCAAAAGA+GGG 0.569684 4_3:+47113896 Msa0643800:CDS
CTTAGTCCAAATTGGTACAC+TGG 0.575705 4_3:+47119133 Msa0643800:CDS
GAGATCCCGTCGTTCAGTGT+TGG 0.576756 4_3:-47114125 None:intergenic
AAAAGGAAGATGAGCAGGGT+AGG 0.584974 4_3:+47119320 Msa0643800:CDS
GAACGACGGGATCTCAGAGA+TGG 0.585890 4_3:+47114133 Msa0643800:CDS
TCTTCTAAGTCTTCAACTGG+TGG 0.587214 4_3:+47119496 Msa0643800:CDS
TAGTTGGGTCAATGAAGTTG+AGG 0.590238 4_3:+47119897 Msa0643800:CDS
GCCGATTCCAGAACTTACAA+TGG 0.592710 4_3:-47118759 None:intergenic
GGGAAATCGCTGATCTAGCA+AGG 0.595724 4_3:-47118892 None:intergenic
ACAAGAACGTCAATTTCTGA+AGG 0.596067 4_3:-47118914 None:intergenic
AATATGATCTTGAGCCAGCA+AGG 0.598452 4_3:+47119632 Msa0643800:CDS
CTTTCATGGAGAAGTATGGT+TGG 0.599046 4_3:+47115182 Msa0643800:CDS
ACAAGAACATCGATTTCGGA+AGG 0.601193 4_3:-47114209 None:intergenic
CAAGAACGTCAATTTCTGAA+GGG 0.603622 4_3:-47118913 None:intergenic
AAAGGAAGACGAGCATGGTA+CGG 0.603680 4_3:+47114616 Msa0643800:CDS
GAATTGACCAAAGACTTTGG+TGG 0.608452 4_3:-47119859 None:intergenic
CGTAAAAGTGTACAATCTCA+CGG 0.608704 4_3:+47119012 Msa0643800:CDS
CAAGAACATCGATTTCGGAA+GGG 0.615853 4_3:-47114208 None:intergenic
AAGAACGTCAATTTCTGAAG+GGG 0.627584 4_3:-47118912 None:intergenic
AACGGAAAAGACAATTGGCT+AGG 0.628055 4_3:-47119174 None:intergenic
GTAAAAGTGTACAATCTCAC+GGG 0.634360 4_3:+47119013 Msa0643800:CDS
AAGAGTCTTCTCTTGCGCCG+TGG 0.637122 4_3:-47119282 None:intergenic
CGATGATAGTGAGGGAACAG+AGG 0.637306 4_3:-47114252 None:intergenic
CAACACAAGATAGAATGCTA+GGG 0.647129 4_3:+47113958 Msa0643800:CDS
TGTTTAGTCAGGACGCATCA+CGG 0.653313 4_3:+47114560 Msa0643800:intron
ATGATAAGCGATGATAGTGA+GGG 0.653702 4_3:-47114260 None:intergenic
TGGTTGGCTCAATGAAGTTG+AGG 0.662172 4_3:+47115198 Msa0643800:CDS
TTTCAAATCACAAAGAAACA+AGG 0.663223 4_3:+47114379 Msa0643800:CDS
GGATTGATCAACGACTCTGG+TGG 0.663465 4_3:-47115160 None:intergenic
GCATCACCAACACTGAACGA+CGG 0.683718 4_3:+47114119 Msa0643800:CDS
TCATCCCCAACACTGAACGA+CGG 0.690414 4_3:+47118824 Msa0643800:CDS
ATTCAAAAGGAAGATGAGCA+GGG 0.694442 4_3:+47119316 Msa0643800:CDS
TGTTTAGTACGAACGCACCA+CGG 0.710347 4_3:+47119265 Msa0643800:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTATATATACATATATTGT+GGG + chr4_3:47115510-47115529 Msa0643800:intron 10.0%
!! ACATAAATAAAAAGAATAAA+AGG - chr4_3:47117558-47117577 None:intergenic 10.0%
!!! TATTCTTATTATTTCAATTT+TGG + chr4_3:47117787-47117806 Msa0643800:intron 10.0%
!! GTTTATATATACATATATTG+TGG + chr4_3:47115509-47115528 Msa0643800:intron 15.0%
!! TTATATATACATATATTGTG+GGG + chr4_3:47115511-47115530 Msa0643800:intron 15.0%
!!! TTAAATTCAAATTTGAAACT+TGG - chr4_3:47117586-47117605 None:intergenic 15.0%
!! ACAAAAAAAAAAAAATTCGT+AGG - chr4_3:47118112-47118131 None:intergenic 15.0%
!!! CAATATACTTTTGTTCTTTA+AGG - chr4_3:47114531-47114550 None:intergenic 20.0%
!! TATAATTTCATTCATTGTTG+TGG + chr4_3:47115266-47115285 Msa0643800:intron 20.0%
!! TAAGAAGAAGAAAAAATTGA+AGG + chr4_3:47115305-47115324 Msa0643800:intron 20.0%
!! AAGAAGAAGAAAAAATTGAA+GGG + chr4_3:47115306-47115325 Msa0643800:intron 20.0%
!!! GATGAAGAATGAAAATATTT+TGG - chr4_3:47116604-47116623 None:intergenic 20.0%
!! CATTGAATAAGATAAATCTT+TGG - chr4_3:47117955-47117974 None:intergenic 20.0%
!! AAAAAAAATTCGTAGGATTA+AGG - chr4_3:47118105-47118124 None:intergenic 20.0%
! GAAACACATAAAGTAAATAG+AGG - chr4_3:47113848-47113867 None:intergenic 25.0%
! TGTACATATGTTTCCTAATT+TGG + chr4_3:47113874-47113893 Msa0643800:CDS 25.0%
! AATCTAATATGTAACACTCT+TGG - chr4_3:47113923-47113942 None:intergenic 25.0%
! TTTCAAATCACAAAGAAACA+AGG + chr4_3:47114379-47114398 Msa0643800:CDS 25.0%
!!! TCTTTTGTTTGTCAAAAGAA+TGG - chr4_3:47114507-47114526 None:intergenic 25.0%
! GTATAATTGTTGCCTTAAAA+AGG + chr4_3:47114598-47114617 Msa0643800:CDS 25.0%
!! AGCTTTTGTTGAGAATTTAA+GGG + chr4_3:47114682-47114701 Msa0643800:CDS 25.0%
!! TCTCTTATTGGCAAAATTTT+GGG - chr4_3:47114716-47114735 None:intergenic 25.0%
!! TTCTCTTATTGGCAAAATTT+TGG - chr4_3:47114717-47114736 None:intergenic 25.0%
!!! TCACCATTGAATTTTAAAAC+TGG + chr4_3:47114836-47114855 Msa0643800:CDS 25.0%
!!! ACACCAGTTTTAAAATTCAA+TGG - chr4_3:47114842-47114861 None:intergenic 25.0%
! AGAAGAAGAAAAAATTGAAG+GGG + chr4_3:47115307-47115326 Msa0643800:intron 25.0%
!! TTTTACTAGATTTCTTGACA+AGG + chr4_3:47115342-47115361 Msa0643800:intron 25.0%
! ATTATTGAAACCTTGATCAA+TGG + chr4_3:47115438-47115457 Msa0643800:intron 25.0%
! AAAGTAAACAAACTCCTTAT+TGG - chr4_3:47115471-47115490 None:intergenic 25.0%
! TCAATTTGAAGATAGTTACT+TGG + chr4_3:47115628-47115647 Msa0643800:intron 25.0%
!! TTTTTATAGTGTTCCTTCTT+GGG - chr4_3:47116027-47116046 None:intergenic 25.0%
! TCGATGTTCTATTTGTTTAT+AGG - chr4_3:47116463-47116482 None:intergenic 25.0%
!! ATTTGATTAACATTTGGGTT+TGG - chr4_3:47116695-47116714 None:intergenic 25.0%
! TCCACATTTGATTAACATTT+GGG - chr4_3:47116700-47116719 None:intergenic 25.0%
! TTCCACATTTGATTAACATT+TGG - chr4_3:47116701-47116720 None:intergenic 25.0%
! AATGTTTGTAGGAAAATAGA+AGG + chr4_3:47116740-47116759 Msa0643800:intron 25.0%
! AATGTAGAATCTTGCAAAAT+AGG + chr4_3:47117081-47117100 Msa0643800:intron 25.0%
!!! TGTAGAAGAAGATATTTTAG+AGG + chr4_3:47117238-47117257 Msa0643800:intron 25.0%
!!! TATTTTCTGTTTTAACCTTC+AGG + chr4_3:47117420-47117439 Msa0643800:intron 25.0%
! AATAAAAGGATGAATCGTTT+GGG - chr4_3:47117544-47117563 None:intergenic 25.0%
!!! TTGTGTGGATATTTTTGAAT+AGG + chr4_3:47117675-47117694 Msa0643800:intron 25.0%
!!! TTTGAATAGGTTTTGTAACA+TGG + chr4_3:47117688-47117707 Msa0643800:intron 25.0%
! CAATTGAACTCTTCTAATTT+AGG + chr4_3:47117747-47117766 Msa0643800:intron 25.0%
!! ATTTTGGACAATAATTCTGT+TGG + chr4_3:47117803-47117822 Msa0643800:intron 25.0%
! TGTTGGTCAAACAATTAATT+AGG + chr4_3:47117820-47117839 Msa0643800:intron 25.0%
! AAACATAATTGCAAAATCGT+AGG - chr4_3:47118010-47118029 None:intergenic 25.0%
!! AGTTAAAATTCCGATTTGAA+TGG + chr4_3:47118048-47118067 Msa0643800:intron 25.0%
! TAGGATTTAACCATTCAAAT+CGG - chr4_3:47118061-47118080 None:intergenic 25.0%
! AAACATAATCGTAAAATCGT+AGG - chr4_3:47118080-47118099 None:intergenic 25.0%
!!! TAATGTTTTGGAAAACCTTT+AGG - chr4_3:47118310-47118329 None:intergenic 25.0%
! GCATTTAAATGTGTTCATAA+GGG - chr4_3:47118405-47118424 None:intergenic 25.0%
! AATCTAATATGTAACACTCT+TGG - chr4_3:47113923-47113942 None:intergenic 25.0%
!! AAGAAATAAGTTAGCACTTT+TGG + chr4_3:47119096-47119115 Msa0643800:CDS 25.0%
! TTACAATTGTTGCATTCAAA+AGG + chr4_3:47119303-47119322 Msa0643800:CDS 25.0%
! AAGTCTTTGTTGACAATTTA+AGG + chr4_3:47119386-47119405 Msa0643800:CDS 25.0%
! AGTCTTTGTTGACAATTTAA+GGG + chr4_3:47119387-47119406 Msa0643800:CDS 25.0%
GATCGAATAGTTTCCAAATT+AGG - chr4_3:47113890-47113909 None:intergenic 30.0%
GAAACTATTCGATCAAAAGA+GGG + chr4_3:47113896-47113915 Msa0643800:CDS 30.0%
TGGCAAATTAATCAGAAGAA+CGG + chr4_3:47113992-47114011 Msa0643800:CDS 30.0%
AATCAGAAGAACGGAAAATT+TGG + chr4_3:47114001-47114020 Msa0643800:CDS 30.0%
ATCAGAAGAACGGAAAATTT+GGG + chr4_3:47114002-47114021 Msa0643800:CDS 30.0%
! GTAAAAGTGTACAATATCAC+TGG + chr4_3:47114308-47114327 Msa0643800:CDS 30.0%
! TGAAATTGAAGTGTTTAGTC+AGG + chr4_3:47114549-47114568 Msa0643800:intron 30.0%
TTTATCAAAAACTCTCCCAT+TGG + chr4_3:47114649-47114668 Msa0643800:CDS 30.0%
! GAGCTTTTGTTGAGAATTTA+AGG + chr4_3:47114681-47114700 Msa0643800:CDS 30.0%
AACCTAAGAAGTTCTCTTAT+TGG - chr4_3:47114728-47114747 None:intergenic 30.0%
! AGGGTTTTTATGATAAGCTT+TGG + chr4_3:47115049-47115068 Msa0643800:CDS 30.0%
TCAAATGCAATAGTTGCTTA+TGG + chr4_3:47115080-47115099 Msa0643800:CDS 30.0%
CAAATGCAATAGTTGCTTAT+GGG + chr4_3:47115081-47115100 Msa0643800:CDS 30.0%
AAAATCAGGAAGTTCAAAGT+TGG - chr4_3:47115230-47115249 None:intergenic 30.0%
! TTCCTGATTTTCTTAAGTGA+AGG + chr4_3:47115239-47115258 Msa0643800:intron 30.0%
TACCTTCACTTAAGAAAATC+AGG - chr4_3:47115244-47115263 None:intergenic 30.0%
TCAATGGTTTATCACCAATA+AGG + chr4_3:47115454-47115473 Msa0643800:intron 30.0%
!!! GAACAGGACAATTTTAACTT+AGG + chr4_3:47115666-47115685 Msa0643800:intron 30.0%
!! TAGTTTGCTAGTTTATAGCT+AGG + chr4_3:47115715-47115734 Msa0643800:intron 30.0%
!! AGTTTGCTAGTTTATAGCTA+GGG + chr4_3:47115716-47115735 Msa0643800:intron 30.0%
TATTGATAAGAACCATGTGT+CGG - chr4_3:47115936-47115955 None:intergenic 30.0%
! CTTTTTATAGTGTTCCTTCT+TGG - chr4_3:47116028-47116047 None:intergenic 30.0%
!! AAAAGAGTACTTAGCTTCTA+AGG + chr4_3:47116043-47116062 Msa0643800:intron 30.0%
TGTCTAGAAACACATTCTTA+GGG - chr4_3:47116149-47116168 None:intergenic 30.0%
TTGTCTAGAAACACATTCTT+AGG - chr4_3:47116150-47116169 None:intergenic 30.0%
GCATTATTGTTTCATAACGT+TGG - chr4_3:47116256-47116275 None:intergenic 30.0%
AAACACCTTGGGAAATAATT+TGG - chr4_3:47116561-47116580 None:intergenic 30.0%
! TTTTGGATTTCTTCAGAGAA+AGG - chr4_3:47116587-47116606 None:intergenic 30.0%
AAGGTTGAAATCTGAATTAG+GGG - chr4_3:47116672-47116691 None:intergenic 30.0%
GAAGGTTGAAATCTGAATTA+GGG - chr4_3:47116673-47116692 None:intergenic 30.0%
ACCCAAATGTTAATCAAATG+TGG + chr4_3:47116696-47116715 Msa0643800:intron 30.0%
CTATACTGCAAAATGTTTGT+AGG + chr4_3:47116729-47116748 Msa0643800:intron 30.0%
! TCAAGAAGTCTTGGAAATTT+TGG - chr4_3:47116857-47116876 None:intergenic 30.0%
AAAATTTCCAAGACTTCTTG+AGG + chr4_3:47116856-47116875 Msa0643800:intron 30.0%
AAATTTCCAAGACTTCTTGA+GGG + chr4_3:47116857-47116876 Msa0643800:intron 30.0%
TGTTAGATCTCAAAACTCTT+TGG - chr4_3:47116920-47116939 None:intergenic 30.0%
!! TTTTACAACTTGTTCTACCT+TGG - chr4_3:47117014-47117033 None:intergenic 30.0%
AGAACAAGTTGTAAAATCCA+AGG + chr4_3:47117018-47117037 Msa0643800:intron 30.0%
ATAAATGGACACTAGTATTC+TGG + chr4_3:47117451-47117470 Msa0643800:intron 30.0%
GAATAAAAGGATGAATCGTT+TGG - chr4_3:47117545-47117564 None:intergenic 30.0%
CAAAAATATCCACACAAAGA+GGG - chr4_3:47117672-47117691 None:intergenic 30.0%
TCAAAAATATCCACACAAAG+AGG - chr4_3:47117673-47117692 None:intergenic 30.0%
ATTGTTGTCTTCCCTTAATT+AGG + chr4_3:47117715-47117734 Msa0643800:intron 30.0%
!! AACTCTTCTAATTTAGGTTG+TGG + chr4_3:47117753-47117772 Msa0643800:intron 30.0%
TGACACACACAAAATTGATT+TGG + chr4_3:47117898-47117917 Msa0643800:intron 30.0%
TTAACTACGATGATCATTGA+AGG - chr4_3:47118034-47118053 None:intergenic 30.0%
! AGCTTTTAAACTCTCATCTA+AGG - chr4_3:47118212-47118231 None:intergenic 30.0%
CGCATTTAAATGTGTTCATA+AGG - chr4_3:47118406-47118425 None:intergenic 30.0%
!!! CTAGAGGAAGTGTTTTATAA+GGG - chr4_3:47118457-47118476 None:intergenic 30.0%
GAAGTACATAAAGTAAAGAG+AGG - chr4_3:47118553-47118572 None:intergenic 30.0%
TGTACACATGTTTCCTAATT+TGG + chr4_3:47118579-47118598 Msa0643800:intron 30.0%
GATCGTATAGTTTCCAAATT+AGG - chr4_3:47118595-47118614 None:intergenic 30.0%
GAAACTATACGATCAAAAGA+AGG + chr4_3:47118601-47118620 Msa0643800:intron 30.0%
AATCAGAAGAACCAAGAATT+TGG + chr4_3:47118706-47118725 Msa0643800:intron 30.0%
ATCAGAAGAACCAAGAATTT+GGG + chr4_3:47118707-47118726 Msa0643800:intron 30.0%
!!! CAGTATGCTTCTGTTTTTTA+AGG - chr4_3:47119236-47119255 None:intergenic 30.0%
TCACCATTGAATTTCAAAAC+TGG + chr4_3:47119535-47119554 Msa0643800:CDS 30.0%
!!! ACACCAGTTTTGAAATTCAA+TGG - chr4_3:47119541-47119560 None:intergenic 30.0%
GCAAAAAAGAGGCTAAAAAA+AGG + chr4_3:47119721-47119740 Msa0643800:CDS 30.0%
AGAGTCTTTATGATAAGCTT+TGG + chr4_3:47119748-47119767 Msa0643800:CDS 30.0%
TCAAATGCAATAGTTGCTTA+TGG + chr4_3:47115080-47115099 Msa0643800:CDS 30.0%
CAAATGCAATAGTTGCTTAT+GGG + chr4_3:47115081-47115100 Msa0643800:CDS 30.0%
TAATTATCCACCAAAGTCTT+TGG + chr4_3:47119852-47119871 Msa0643800:CDS 30.0%
AAAGAATTGACCAAAGACTT+TGG - chr4_3:47119865-47119884 None:intergenic 30.0%
! TTTCATGGAGAAGTATAGTT+GGG + chr4_3:47119882-47119901 Msa0643800:CDS 30.0%
GGAAACTATTCGATCAAAAG+AGG + chr4_3:47113895-47113914 Msa0643800:CDS 35.0%
CAACACAAGATAGAATGCTA+GGG + chr4_3:47113958-47113977 Msa0643800:CDS 35.0%
!! GACAACAAGAACATCGATTT+CGG - chr4_3:47114216-47114235 None:intergenic 35.0%
! ATGATAAGCGATGATAGTGA+GGG - chr4_3:47114263-47114282 None:intergenic 35.0%
! AATGATAAGCGATGATAGTG+AGG - chr4_3:47114264-47114283 None:intergenic 35.0%
AGTGTACAATATCACTGGAA+TGG + chr4_3:47114313-47114332 Msa0643800:CDS 35.0%
GTGTACAATATCACTGGAAT+GGG + chr4_3:47114314-47114333 Msa0643800:CDS 35.0%
! AAGAAACAAGGTAGCACTTT+TGG + chr4_3:47114391-47114410 Msa0643800:CDS 35.0%
ATCATTGATCTATCATTGCC+AGG - chr4_3:47114449-47114468 None:intergenic 35.0%
ACAATTATACGAGTCATCTC+TGG - chr4_3:47114588-47114607 None:intergenic 35.0%
TGCCAATAAGAGAACTTCTT+AGG + chr4_3:47114723-47114742 Msa0643800:CDS 35.0%
AAGAGAACTTCTTAGGTTTC+TGG + chr4_3:47114730-47114749 Msa0643800:CDS 35.0%
!! TCTAGTTCTAAGTCTTCTAG+TGG + chr4_3:47114791-47114810 Msa0643800:intron 35.0%
AAAGCAGTGATTGATGGAAT+TGG + chr4_3:47114890-47114909 Msa0643800:CDS 35.0%
! AGAATGACACTACATCGTTT+TGG + chr4_3:47114953-47114972 Msa0643800:CDS 35.0%
GCAAAAAAGAGGCTCAAAAA+AGG + chr4_3:47115022-47115041 Msa0643800:intron 35.0%
! TTTATGATAAGCTTTGGTGC+TGG + chr4_3:47115055-47115074 Msa0643800:CDS 35.0%
ATGTTGGAGATGCAAATGTT+TGG + chr4_3:47115116-47115135 Msa0643800:CDS 35.0%
TGTTGGAGATGCAAATGTTT+GGG + chr4_3:47115117-47115136 Msa0643800:CDS 35.0%
AATCCTTTCATGGAGAAGTA+TGG + chr4_3:47115178-47115197 Msa0643800:CDS 35.0%
AGATTTCTTGACAAGGATCA+AGG + chr4_3:47115349-47115368 Msa0643800:intron 35.0%
TGGTGATAAACCATTGATCA+AGG - chr4_3:47115451-47115470 None:intergenic 35.0%
CACTTAAAAAGAAACCAACC+AGG - chr4_3:47115538-47115557 None:intergenic 35.0%
ATTGATAAGAACCATGTGTC+GGG - chr4_3:47115935-47115954 None:intergenic 35.0%
ATGGTTCTTATCAATACCTC+TGG + chr4_3:47115940-47115959 Msa0643800:intron 35.0%
TGGTTCTTATCAATACCTCT+GGG + chr4_3:47115941-47115960 Msa0643800:intron 35.0%
! ACTTGCACCATTTGTTGATT+TGG + chr4_3:47115964-47115983 Msa0643800:intron 35.0%
!! CTTGCACCATTTGTTGATTT+GGG + chr4_3:47115965-47115984 Msa0643800:intron 35.0%
GTTAGTCCCAAATCAACAAA+TGG - chr4_3:47115974-47115993 None:intergenic 35.0%
! GATTTGGGACTAACAATGAT+TGG + chr4_3:47115980-47115999 Msa0643800:intron 35.0%
ATAACTCATAAAGCCCAAGA+AGG + chr4_3:47116011-47116030 Msa0643800:intron 35.0%
!! AGTACTTAGCTTCTAAGGTA+AGG + chr4_3:47116048-47116067 Msa0643800:intron 35.0%
!! GTGTTTCTAGACAAGAACAT+TGG + chr4_3:47116156-47116175 Msa0643800:intron 35.0%
TGCCTTCACTAACAACATTT+GGG - chr4_3:47116278-47116297 None:intergenic 35.0%
ATGCCTTCACTAACAACATT+TGG - chr4_3:47116279-47116298 None:intergenic 35.0%
GAAGTTGCAAGAGAAAAACA+TGG + chr4_3:47116338-47116357 Msa0643800:intron 35.0%
AAGAGAAAAACATGGAGCAT+CGG + chr4_3:47116346-47116365 Msa0643800:intron 35.0%
ACATCGAGAGAAAGATATAG+AGG + chr4_3:47116476-47116495 Msa0643800:intron 35.0%
CATCGAGAGAAAGATATAGA+GGG + chr4_3:47116477-47116496 Msa0643800:intron 35.0%
GACAACCAAATTATTTCCCA+AGG + chr4_3:47116553-47116572 Msa0643800:intron 35.0%
GAGAAAGGTTAAAACACCTT+GGG - chr4_3:47116572-47116591 None:intergenic 35.0%
AGAGAAAGGTTAAAACACCT+TGG - chr4_3:47116573-47116592 None:intergenic 35.0%
AGGTTGAAATCTGAATTAGG+GGG - chr4_3:47116671-47116690 None:intergenic 35.0%
GGAAGGTTGAAATCTGAATT+AGG - chr4_3:47116674-47116693 None:intergenic 35.0%
! GATTAACATTTGGGTTTGGA+AGG - chr4_3:47116691-47116710 None:intergenic 35.0%
! GAAGTCTTGGAAATTTTGGA+GGG - chr4_3:47116853-47116872 None:intergenic 35.0%
! AGAAGTCTTGGAAATTTTGG+AGG - chr4_3:47116854-47116873 None:intergenic 35.0%
! CAAAACTCTTTGGAAGGATA+TGG - chr4_3:47116910-47116929 None:intergenic 35.0%
AGATCTCAAAACTCTTTGGA+AGG - chr4_3:47116916-47116935 None:intergenic 35.0%
AGATAGAATTCACACTACCT+TGG - chr4_3:47117038-47117057 None:intergenic 35.0%
! TCAAGGAATTTTCCAACTTG+TGG - chr4_3:47117163-47117182 None:intergenic 35.0%
TTTCTTCTTTCCATGGTTTG+TGG - chr4_3:47117205-47117224 None:intergenic 35.0%
! CTTCTTGTTTCTTCTTTCCA+TGG - chr4_3:47117212-47117231 None:intergenic 35.0%
TACTAGTGTCCATTTATCAC+AGG - chr4_3:47117448-47117467 None:intergenic 35.0%
! TGCACGTTAGTTTATACTGA+CGG - chr4_3:47117619-47117638 None:intergenic 35.0%
GAGGTGATGTTGTAAAATAG+TGG - chr4_3:47117650-47117669 None:intergenic 35.0%
TGACAGTGACACCTAATTAA+GGG - chr4_3:47117729-47117748 None:intergenic 35.0%
TTGACAGTGACACCTAATTA+AGG - chr4_3:47117730-47117749 None:intergenic 35.0%
!! TTTTGGAAAACCTTTAGGTG+TGG - chr4_3:47118305-47118324 None:intergenic 35.0%
TTTATAAGGGTTGAGTGTGT+GGG - chr4_3:47118444-47118463 None:intergenic 35.0%
! TTTTATAAGGGTTGAGTGTG+TGG - chr4_3:47118445-47118464 None:intergenic 35.0%
!!! GCTAGAGGAAGTGTTTTATA+AGG - chr4_3:47118458-47118477 None:intergenic 35.0%
! AGAGTGGGGTTATAGAATTT+TGG - chr4_3:47118515-47118534 None:intergenic 35.0%
AGGAAACATGTGTACAATAG+TGG - chr4_3:47118575-47118594 None:intergenic 35.0%
CAACACAAGATAGAATGCTA+GGG + chr4_3:47113958-47113977 Msa0643800:CDS 35.0%
CTCATCTATACCCAAATTCT+TGG - chr4_3:47118720-47118739 None:intergenic 35.0%
! AAGAACGTCAATTTCTGAAG+GGG - chr4_3:47118915-47118934 None:intergenic 35.0%
CAAGAACGTCAATTTCTGAA+GGG - chr4_3:47118916-47118935 None:intergenic 35.0%
ACAAGAACGTCAATTTCTGA+AGG - chr4_3:47118917-47118936 None:intergenic 35.0%
! CGTAAAAGTGTACAATCTCA+CGG + chr4_3:47119012-47119031 Msa0643800:CDS 35.0%
! GTAAAAGTGTACAATCTCAC+GGG + chr4_3:47119013-47119032 Msa0643800:CDS 35.0%
ATTCAAAAGGAAGATGAGCA+GGG + chr4_3:47119316-47119335 Msa0643800:CDS 35.0%
!! GTAGGCTTGGTTTTCATTTA+GGG + chr4_3:47119338-47119357 Msa0643800:CDS 35.0%
!!! AGACTTTTGTTGCTGCTTTT+GGG - chr4_3:47119372-47119391 None:intergenic 35.0%
!!! AAGACTTTTGTTGCTGCTTT+TGG - chr4_3:47119373-47119392 None:intergenic 35.0%
! ACCCAAAATTTTGCCAACAA+GGG + chr4_3:47119417-47119436 Msa0643800:CDS 35.0%
! TCCCTTGTTGGCAAAATTTT+GGG - chr4_3:47119421-47119440 None:intergenic 35.0%
! TTCCCTTGTTGGCAAAATTT+TGG - chr4_3:47119422-47119441 None:intergenic 35.0%
AGTTCTTCTAAGTCTTCAAC+TGG + chr4_3:47119493-47119512 Msa0643800:CDS 35.0%
AAAGCAGTGATTGATGGAAT+TGG + chr4_3:47114890-47114909 Msa0643800:CDS 35.0%
! TTTATGATAAGCTTTGGTGC+TGG + chr4_3:47115055-47115074 Msa0643800:CDS 35.0%
ATGTTGGAGATGCAAATGTT+TGG + chr4_3:47115116-47115135 Msa0643800:CDS 35.0%
TGTTGGAGATGCAAATGTTT+GGG + chr4_3:47115117-47115136 Msa0643800:CDS 35.0%
GTCTTTGGTCAATTCTTTCA+TGG + chr4_3:47119867-47119886 Msa0643800:CDS 35.0%
! CTTTCATGGAGAAGTATAGT+TGG + chr4_3:47119881-47119900 Msa0643800:CDS 35.0%
!! CTTGTGTTGGCTTGTAACAT+TGG - chr4_3:47113947-47113966 None:intergenic 40.0%
CCTAGCATTCTATCTTGTGT+TGG - chr4_3:47113960-47113979 None:intergenic 40.0%
CCAACACAAGATAGAATGCT+AGG + chr4_3:47113957-47113976 Msa0643800:CDS 40.0%
CTCAAAGCCATTGTAAGTTG+CGG + chr4_3:47114047-47114066 Msa0643800:intron 40.0%
TGCAAAACTCCTTGCAAGAT+CGG + chr4_3:47114178-47114197 Msa0643800:CDS 40.0%
!! AAGAACATCGATTTCGGAAG+GGG - chr4_3:47114210-47114229 None:intergenic 40.0%
!! CAAGAACATCGATTTCGGAA+GGG - chr4_3:47114211-47114230 None:intergenic 40.0%
!! ACAAGAACATCGATTTCGGA+AGG - chr4_3:47114212-47114231 None:intergenic 40.0%
CAGAGTCTCTTAGTCCAAAT+TGG + chr4_3:47114420-47114439 Msa0643800:CDS 40.0%
CTTAGTCCAAATTGGTATCC+TGG + chr4_3:47114428-47114447 Msa0643800:CDS 40.0%
TCATTGCCAGGATACCAATT+TGG - chr4_3:47114437-47114456 None:intergenic 40.0%
! CATGCTCGTCTTCCTTTTTA+AGG - chr4_3:47114613-47114632 None:intergenic 40.0%
CTTAAAAAGGAAGACGAGCA+TGG + chr4_3:47114611-47114630 Msa0643800:CDS 40.0%
AAGCTCTTGTTGCTACCAAT+GGG - chr4_3:47114667-47114686 None:intergenic 40.0%
AAAGCTCTTGTTGCTACCAA+TGG - chr4_3:47114668-47114687 None:intergenic 40.0%
!! AGTTCTAAGTCTTCTAGTGG+TGG + chr4_3:47114794-47114813 Msa0643800:intron 40.0%
!! GATCATTTTTGCCTCCATAC+AGG + chr4_3:47114863-47114882 Msa0643800:CDS 40.0%
! TGGTAGTTTGTGGTATGTGT+TGG + chr4_3:47114988-47115007 Msa0643800:intron 40.0%
! GGTAGTTTGTGGTATGTGTT+GGG + chr4_3:47114989-47115008 Msa0643800:intron 40.0%
! GTAGTTTGTGGTATGTGTTG+GGG + chr4_3:47114990-47115009 Msa0643800:intron 40.0%
GGTACATGGAAGCAAAAAAG+AGG + chr4_3:47115011-47115030 Msa0643800:intron 40.0%
AGAGGCTCAAAAAAGGTGAT+AGG + chr4_3:47115029-47115048 Msa0643800:intron 40.0%
GAGGCTCAAAAAAGGTGATA+GGG + chr4_3:47115030-47115049 Msa0643800:intron 40.0%
TGGGAAGTGATGAAAGATGT+TGG + chr4_3:47115100-47115119 Msa0643800:CDS 40.0%
AAAGGATTGATCAACGACTC+TGG - chr4_3:47115166-47115185 None:intergenic 40.0%
GTCGTTGATCAATCCTTTCA+TGG + chr4_3:47115168-47115187 Msa0643800:CDS 40.0%
CAACCATACTTCTCCATGAA+AGG - chr4_3:47115184-47115203 None:intergenic 40.0%
! CTTTCATGGAGAAGTATGGT+TGG + chr4_3:47115182-47115201 Msa0643800:CDS 40.0%
ATACATATATTGTGGGGACC+TGG + chr4_3:47115517-47115536 Msa0643800:intron 40.0%
GTAGTTGTGTTAGTCAGAAC+AGG + chr4_3:47115650-47115669 Msa0643800:intron 40.0%
! AACGGACTTTGTATCCTAGT+TGG - chr4_3:47115841-47115860 None:intergenic 40.0%
GTCATTCAGTGATTCCTCAA+CGG - chr4_3:47115859-47115878 None:intergenic 40.0%
ACTTAGACCCTATCTAGACA+AGG + chr4_3:47115877-47115896 Msa0643800:intron 40.0%
GAATCCTCCTTGTCTAGATA+GGG - chr4_3:47115887-47115906 None:intergenic 40.0%
TGGGACTAACAATGATTGGA+TGG + chr4_3:47115984-47116003 Msa0643800:intron 40.0%
! GGTGGTTTCTTAGGGTTTTA+AGG - chr4_3:47116101-47116120 None:intergenic 40.0%
!! AACGTTGGTGTCAATTTGAG+TGG - chr4_3:47116241-47116260 None:intergenic 40.0%
TGCCCAAATGTTGTTAGTGA+AGG + chr4_3:47116273-47116292 Msa0643800:intron 40.0%
! AGAGAAAAACATGGAGCATC+GGG + chr4_3:47116347-47116366 Msa0643800:intron 40.0%
GGAAGAAGACCATTTGAAGA+AGG + chr4_3:47116380-47116399 Msa0643800:intron 40.0%
CTTCTTGACCCTCCATTTAA+CGG - chr4_3:47116434-47116453 None:intergenic 40.0%
AAGATATAGAGGGAGAGAGT+TGG + chr4_3:47116487-47116506 Msa0643800:intron 40.0%
AGATATAGAGGGAGAGAGTT+GGG + chr4_3:47116488-47116507 Msa0643800:intron 40.0%
TGTTTCGATGTATGACTCGA+GGG - chr4_3:47116642-47116661 None:intergenic 40.0%
TTGTTTCGATGTATGACTCG+AGG - chr4_3:47116643-47116662 None:intergenic 40.0%
! AACTCTTTGGAAGGATATGG+TGG - chr4_3:47116907-47116926 None:intergenic 40.0%
CATAGTCCTAGGATTCAGTA+GGG - chr4_3:47116961-47116980 None:intergenic 40.0%
TATGGACGAGTTAAGGCTTA+GGG + chr4_3:47116977-47116996 Msa0643800:intron 40.0%
TTAGGGTGGAAAACATACCA+AGG + chr4_3:47116994-47117013 Msa0643800:intron 40.0%
TGTGAATTCTATCTAGCAGC+AGG + chr4_3:47117044-47117063 Msa0643800:intron 40.0%
! ATGGTTTGTGGTGCTTGTTT+GGG - chr4_3:47117193-47117212 None:intergenic 40.0%
CATTTATCACAGGAACCTGA+AGG - chr4_3:47117438-47117457 None:intergenic 40.0%
! CTTCAGGTTCCTGTGATAAA+TGG + chr4_3:47117436-47117455 Msa0643800:intron 40.0%
! GCTGAGGGATTAGTAAAACA+TGG + chr4_3:47117484-47117503 Msa0643800:intron 40.0%
AAATATCCACACAAAGAGGG+AGG - chr4_3:47117669-47117688 None:intergenic 40.0%
CAATGTAAAGCTGTTGGATC+TGG - chr4_3:47118251-47118270 None:intergenic 40.0%
!! TGGGAAAGTATTCAAGCTAG+AGG - chr4_3:47118473-47118492 None:intergenic 40.0%
!!! TGGAGAGAGTTTTGAAGGAT+GGG - chr4_3:47118492-47118511 None:intergenic 40.0%
!! TTTGGTGGAGAGAGTTTTGA+AGG - chr4_3:47118497-47118516 None:intergenic 40.0%
! GTGGGGTTATAGAATTTTGG+TGG - chr4_3:47118512-47118531 None:intergenic 40.0%
AACTCCATTTGAGAGAGAGT+GGG - chr4_3:47118530-47118549 None:intergenic 40.0%
!! CTTGTGTTGGCTTGTAACAT+TGG - chr4_3:47113947-47113966 None:intergenic 40.0%
CCTAGCATTCTATCTTGTGT+TGG - chr4_3:47113960-47113979 None:intergenic 40.0%
CCAACACAAGATAGAATGCT+AGG + chr4_3:47113957-47113976 Msa0643800:CDS 40.0%
! CAGAACTTACAATGGCTTTG+AGG - chr4_3:47118754-47118773 None:intergenic 40.0%
CTCAAAGCCATTGTAAGTTC+TGG + chr4_3:47118752-47118771 Msa0643800:CDS 40.0%
!! GCCATTGTAAGTTCTGGAAT+CGG + chr4_3:47118758-47118777 Msa0643800:CDS 40.0%
CGACGATAAAGAAGGAAGAA+TGG - chr4_3:47118960-47118979 None:intergenic 40.0%
ATGATTCGCGACGATAAAGA+AGG - chr4_3:47118968-47118987 None:intergenic 40.0%
! CGTCGTGTCTCATTTTGTAA+CGG - chr4_3:47114289-47114308 None:intergenic 40.0%
CAGAGTCTCTTAGTCCAAAT+TGG + chr4_3:47114420-47114439 Msa0643800:CDS 40.0%
CTTAGTCCAAATTGGTACAC+TGG + chr4_3:47119133-47119152 Msa0643800:CDS 40.0%
TCATTGCCAGTGTACCAATT+TGG - chr4_3:47119142-47119161 None:intergenic 40.0%
AACGGAAAAGACAATTGGCT+AGG - chr4_3:47119177-47119196 None:intergenic 40.0%
CATTCAAAAGGAAGATGAGC+AGG + chr4_3:47119315-47119334 Msa0643800:CDS 40.0%
!! GGTAGGCTTGGTTTTCATTT+AGG + chr4_3:47119337-47119356 Msa0643800:CDS 40.0%
! CACCCAAAATTTTGCCAACA+AGG + chr4_3:47119416-47119435 Msa0643800:CDS 40.0%
AACCTAAGCAATTCCCTTGT+TGG - chr4_3:47119433-47119452 None:intergenic 40.0%
TCTTCTAAGTCTTCAACTGG+TGG + chr4_3:47119496-47119515 Msa0643800:CDS 40.0%
!! GATCATTTTTGCCTCCATAC+AGG + chr4_3:47114863-47114882 Msa0643800:CDS 40.0%
AATATGATCTTGAGCCAGCA+AGG + chr4_3:47119632-47119651 Msa0643800:CDS 40.0%
! AGGATGACACTACATCGTTT+TGG + chr4_3:47119652-47119671 Msa0643800:CDS 40.0%
! GTAGCTTGTGGTATGTGTTA+GGG + chr4_3:47119689-47119708 Msa0643800:CDS 40.0%
GGTACATGGAAGCAAAAAAG+AGG + chr4_3:47115011-47115030 Msa0643800:intron 40.0%
GAATTGACCAAAGACTTTGG+TGG - chr4_3:47119862-47119881 None:intergenic 40.0%
TAGTTGGGTCAATGAAGTTG+AGG + chr4_3:47119897-47119916 Msa0643800:CDS 40.0%
! ATGCTAGGGACAGAGTTTTG+TGG + chr4_3:47113972-47113991 Msa0643800:CDS 45.0%
GCGCCAAGAAATGTCATTGA+AGG + chr4_3:47114089-47114108 Msa0643800:intron 45.0%
CGGCCTTCAATGACATTTCT+TGG - chr4_3:47114095-47114114 None:intergenic 45.0%
!! GCCAATTGTCTTTTTCGCAC+CGG + chr4_3:47114473-47114492 Msa0643800:CDS 45.0%
ACCGGTGCGAAAAAGACAAT+TGG - chr4_3:47114477-47114496 None:intergenic 45.0%
!! AATTGTCTTTTTCGCACCGG+TGG + chr4_3:47114476-47114495 Msa0643800:CDS 45.0%
CAAAAGAATGGCACAACCAC+CGG - chr4_3:47114495-47114514 None:intergenic 45.0%
TGTTTAGTCAGGACGCATCA+CGG + chr4_3:47114560-47114579 Msa0643800:intron 45.0%
AAAGGAAGACGAGCATGGTA+CGG + chr4_3:47114616-47114635 Msa0643800:CDS 45.0%
TCTAAGTCTTCTAGTGGTGG+AGG + chr4_3:47114797-47114816 Msa0643800:intron 45.0%
! CATTTTTGCCTCCATACAGG+AGG + chr4_3:47114866-47114885 Msa0643800:CDS 45.0%
!! TCACTGCTTTTCCTCCTGTA+TGG - chr4_3:47114880-47114899 None:intergenic 45.0%
GGAGGAAAAGCAGTGATTGA+TGG + chr4_3:47114884-47114903 Msa0643800:CDS 45.0%
! CGATGTAGTGTCATTCTTGC+TGG - chr4_3:47114950-47114969 None:intergenic 45.0%
!! CGTTTTGGTAACACTTCTGC+TGG + chr4_3:47114968-47114987 Msa0643800:CDS 45.0%
ACACTTCTGCTGGTAGTTTG+TGG + chr4_3:47114978-47114997 Msa0643800:intron 45.0%
! TGGTTGGCTCAATGAAGTTG+AGG + chr4_3:47115198-47115217 Msa0643800:CDS 45.0%
ATATATTGTGGGGACCTGGT+TGG + chr4_3:47115521-47115540 Msa0643800:intron 45.0%
GGTGTATTGTACCTCAGGAT+CGG + chr4_3:47115737-47115756 Msa0643800:intron 45.0%
!! ACGAAGGGTATCGCATATCA+AGG + chr4_3:47115806-47115825 Msa0643800:intron 45.0%
CTAGGATACAAAGTCCGTTG+AGG + chr4_3:47115842-47115861 Msa0643800:intron 45.0%
TAGACCCTATCTAGACAAGG+AGG + chr4_3:47115880-47115899 Msa0643800:intron 45.0%
CGAATCCTCCTTGTCTAGAT+AGG - chr4_3:47115888-47115907 None:intergenic 45.0%
!! CGGGTAAGGGTTTTGTGTAT+TGG - chr4_3:47115916-47115935 None:intergenic 45.0%
AAGAACCATGTGTCGGGTAA+GGG - chr4_3:47115929-47115948 None:intergenic 45.0%
TAAGAACCATGTGTCGGGTA+AGG - chr4_3:47115930-47115949 None:intergenic 45.0%
AGGTCACAGGTGGTTTCTTA+GGG - chr4_3:47116109-47116128 None:intergenic 45.0%
! ACATTCTTAGGGTTTTCCCC+TGG - chr4_3:47116138-47116157 None:intergenic 45.0%
AAGAACATTGGCGTACACAG+TGG + chr4_3:47116168-47116187 Msa0643800:intron 45.0%
AGAACATTGGCGTACACAGT+GGG + chr4_3:47116169-47116188 Msa0643800:intron 45.0%
CTGAAGATGTTAGTGGAGCT+AGG - chr4_3:47116218-47116237 None:intergenic 45.0%
TGAGTGGCTGAAGATGTTAG+TGG - chr4_3:47116225-47116244 None:intergenic 45.0%
AGGCATGAATGATGTCGTAC+CGG + chr4_3:47116293-47116312 Msa0643800:intron 45.0%
AAAGTTGCCATGAGTCTCTC+CGG - chr4_3:47116315-47116334 None:intergenic 45.0%
AGAGACTCATGGCAACTTTG+AGG + chr4_3:47116316-47116335 Msa0643800:intron 45.0%
CCTTCGCTTCCTTCTTCAAA+TGG - chr4_3:47116392-47116411 None:intergenic 45.0%
CCATTTGAAGAAGGAAGCGA+AGG + chr4_3:47116389-47116408 Msa0643800:intron 45.0%
GAGCTACTCCGTTAAATGGA+GGG + chr4_3:47116423-47116442 Msa0643800:intron 45.0%
GATATAGAGGGAGAGAGTTG+GGG + chr4_3:47116489-47116508 Msa0643800:intron 45.0%
ACCTCCATAACTAGTCACAG+AGG + chr4_3:47116525-47116544 Msa0643800:intron 45.0%
CCTCCATAACTAGTCACAGA+GGG + chr4_3:47116526-47116545 Msa0643800:intron 45.0%
TTTCCAAGACTTCTTGAGGG+TGG + chr4_3:47116860-47116879 Msa0643800:intron 45.0%
CACTAACCCTACTGAATCCT+AGG + chr4_3:47116952-47116971 Msa0643800:intron 45.0%
CCATAGTCCTAGGATTCAGT+AGG - chr4_3:47116962-47116981 None:intergenic 45.0%
CCTACTGAATCCTAGGACTA+TGG + chr4_3:47116959-47116978 Msa0643800:intron 45.0%
CTTAACTCGTCCATAGTCCT+AGG - chr4_3:47116972-47116991 None:intergenic 45.0%
CTAGGACTATGGACGAGTTA+AGG + chr4_3:47116970-47116989 Msa0643800:intron 45.0%
CTATGGACGAGTTAAGGCTT+AGG + chr4_3:47116976-47116995 Msa0643800:intron 45.0%
ATTCTATCTAGCAGCAGGTC+AGG + chr4_3:47117049-47117068 Msa0643800:intron 45.0%
ATAGGATTGAGCATGTGAGC+TGG + chr4_3:47117099-47117118 Msa0643800:intron 45.0%
TAGGATTGAGCATGTGAGCT+GGG + chr4_3:47117100-47117119 Msa0643800:intron 45.0%
! CATGGTTTGTGGTGCTTGTT+TGG - chr4_3:47117194-47117213 None:intergenic 45.0%
CAAACAAGCACCACAAACCA+TGG + chr4_3:47117192-47117211 Msa0643800:intron 45.0%
GTGTGTCAATGTCCCTTAGT+AGG - chr4_3:47117886-47117905 None:intergenic 45.0%
GCTGCACAATGTAAAGCTGT+TGG - chr4_3:47118257-47118276 None:intergenic 45.0%
GCAGCTACTGCATATGATCT+AGG + chr4_3:47118275-47118294 Msa0643800:intron 45.0%
!!! GTGGAGAGAGTTTTGAAGGA+TGG - chr4_3:47118493-47118512 None:intergenic 45.0%
TAACCCCACTCTCTCTCAAA+TGG + chr4_3:47118523-47118542 Msa0643800:intron 45.0%
ACTCCATTTGAGAGAGAGTG+GGG - chr4_3:47118529-47118548 None:intergenic 45.0%
GAACTCCATTTGAGAGAGAG+TGG - chr4_3:47118531-47118550 None:intergenic 45.0%
! ATGCTAGGGACTGAGTTTTG+TGG + chr4_3:47118677-47118696 Msa0643800:intron 45.0%
! GCCGATTCCAGAACTTACAA+TGG - chr4_3:47118762-47118781 None:intergenic 45.0%
GCACCAAGAAACGTCTTTGA+AGG + chr4_3:47118794-47118813 Msa0643800:CDS 45.0%
AGTGTACAATCTCACGGGAA+TGG + chr4_3:47119018-47119037 Msa0643800:CDS 45.0%
GTGTACAATCTCACGGGAAT+GGG + chr4_3:47119019-47119038 Msa0643800:CDS 45.0%
! GCCAATTGTCTTTTCCGTTC+CGG + chr4_3:47119178-47119197 Msa0643800:CDS 45.0%
! AATTGTCTTTTCCGTTCCGG+CGG + chr4_3:47119181-47119200 Msa0643800:CDS 45.0%
TGTTTAGTACGAACGCACCA+CGG + chr4_3:47119265-47119284 Msa0643800:CDS 45.0%
AAAAGGAAGATGAGCAGGGT+AGG + chr4_3:47119320-47119339 Msa0643800:CDS 45.0%
TGCCAACAAGGGAATTGCTT+AGG + chr4_3:47119428-47119447 Msa0643800:CDS 45.0%
! CATTTTTGCCTCCATACAGG+AGG + chr4_3:47114866-47114885 Msa0643800:CDS 45.0%
!! TCACTGCTTTTCCTCCTGTA+TGG - chr4_3:47114880-47114899 None:intergenic 45.0%
GGAGGAAAAGCAGTGATTGA+TGG + chr4_3:47114884-47114903 Msa0643800:CDS 45.0%
!! CGTTTTGGTAACACTTCTGC+TGG + chr4_3:47114968-47114987 Msa0643800:CDS 45.0%
! GGTAGCTTGTGGTATGTGTT+AGG + chr4_3:47119688-47119707 Msa0643800:CDS 45.0%
GTGGTATGTGTTAGGGTACA+TGG + chr4_3:47119696-47119715 Msa0643800:CDS 45.0%
TGGGAAGTGATGAGAGATGT+TGG + chr4_3:47119799-47119818 Msa0643800:CDS 45.0%
!!! ATAAAAATATTTTAATGTTT+TGG - chr4_3:47118322-47118341 None:intergenic 5.0%
GCCATTGTAAGTTGCGGCAT+TGG + chr4_3:47114053-47114072 Msa0643800:intron 50.0%
GCCAATGCCGCAACTTACAA+TGG - chr4_3:47114057-47114076 None:intergenic 50.0%
!! TCAGTGTTGGTGATGCTTCG+CGG - chr4_3:47114115-47114134 None:intergenic 50.0%
GCATCACCAACACTGAACGA+CGG + chr4_3:47114119-47114138 Msa0643800:CDS 50.0%
CATCACCAACACTGAACGAC+GGG + chr4_3:47114120-47114139 Msa0643800:CDS 50.0%
GGGAAATAGCCGATCTTGCA+AGG - chr4_3:47114190-47114209 None:intergenic 50.0%
! CGATGATAGTGAGGGAACAG+AGG - chr4_3:47114255-47114274 None:intergenic 50.0%
!! CTGCTTTTCCTCCTGTATGG+AGG - chr4_3:47114877-47114896 None:intergenic 50.0%
GTGGTATGTGTTGGGGTACA+TGG + chr4_3:47114997-47115016 Msa0643800:intron 50.0%
GGATTGATCAACGACTCTGG+TGG - chr4_3:47115163-47115182 None:intergenic 50.0%
GCTAGGGTGTATTGTACCTC+AGG + chr4_3:47115732-47115751 Msa0643800:intron 50.0%
GTGCTTGATGTCCATCGTCA+GGG - chr4_3:47115765-47115784 None:intergenic 50.0%
AGTGCTTGATGTCCATCGTC+AGG - chr4_3:47115766-47115785 None:intergenic 50.0%
! ACGATGGACATCAAGCACTG+CGG + chr4_3:47115767-47115786 Msa0643800:intron 50.0%
ATGCGATACCCTTCGTCCTT+GGG - chr4_3:47115802-47115821 None:intergenic 50.0%
TATGCGATACCCTTCGTCCT+TGG - chr4_3:47115803-47115822 None:intergenic 50.0%
CAAGGTCAAGCAAGCCAACT+AGG + chr4_3:47115824-47115843 Msa0643800:intron 50.0%
CAAAACCCTTACCCGACACA+TGG + chr4_3:47115921-47115940 Msa0643800:intron 50.0%
ACAAATGGTGCAAGTCCCAG+AGG - chr4_3:47115959-47115978 None:intergenic 50.0%
CAGGTCACAGGTGGTTTCTT+AGG - chr4_3:47116110-47116129 None:intergenic 50.0%
GAACATTGGCGTACACAGTG+GGG + chr4_3:47116170-47116189 Msa0643800:intron 50.0%
!! GAAGGAAGCGAAGGCACTAA+AGG + chr4_3:47116398-47116417 Msa0643800:intron 50.0%
GGAGGAGCTACTCCGTTAAA+TGG + chr4_3:47116419-47116438 Msa0643800:intron 50.0%
GGAGCTACTCCGTTAAATGG+AGG + chr4_3:47116422-47116441 Msa0643800:intron 50.0%
GAGAGAGTTGGGGCAAGAAA+TGG + chr4_3:47116499-47116518 Msa0643800:intron 50.0%
! CCCTCTGTGACTAGTTATGG+AGG - chr4_3:47116529-47116548 None:intergenic 50.0%
! CCACCCTCTGTGACTAGTTA+TGG - chr4_3:47116532-47116551 None:intergenic 50.0%
CCATAACTAGTCACAGAGGG+TGG + chr4_3:47116529-47116548 Msa0643800:intron 50.0%
TCGATGTATGACTCGAGGGT+TGG - chr4_3:47116638-47116657 None:intergenic 50.0%
GAGCGACAAAAGCCACAAGT+TGG + chr4_3:47117148-47117167 Msa0643800:intron 50.0%
GTTTGTGGTGCTTGTTTGGG+AGG - chr4_3:47117190-47117209 None:intergenic 50.0%
!! CTAGTATTCTGGAGTTCGCG+CGG + chr4_3:47117462-47117481 Msa0643800:intron 50.0%
ACATCACCTCCCTCTTTGTG+TGG + chr4_3:47117660-47117679 Msa0643800:intron 50.0%
TTTCCATACCAGCGAGTGCT+TGG + chr4_3:47117860-47117879 Msa0643800:intron 50.0%
TCTAGGTGTGCCACACCTAA+AGG + chr4_3:47118292-47118311 Msa0643800:intron 50.0%
ATAAGGGTTGAGTGTGTGGG+TGG - chr4_3:47118441-47118460 None:intergenic 50.0%
CGGCCTTCAAAGACGTTTCT+TGG - chr4_3:47118800-47118819 None:intergenic 50.0%
GGGAAATCGCTGATCTAGCA+AGG - chr4_3:47118895-47118914 None:intergenic 50.0%
GCCGGAACGGAAAAGACAAT+TGG - chr4_3:47119182-47119201 None:intergenic 50.0%
!! CTGCTTTTCCTCCTGTATGG+AGG - chr4_3:47114877-47114896 None:intergenic 50.0%
CGATGTAGTGTCATCCTTGC+TGG - chr4_3:47119649-47119668 None:intergenic 50.0%
ACACTTCTGCTGGTAGCTTG+TGG + chr4_3:47119677-47119696 Msa0643800:CDS 50.0%
GAGATCCCGTCGTTCAGTGT+TGG - chr4_3:47114128-47114147 None:intergenic 55.0%
GAACGACGGGATCTCAGAGA+TGG + chr4_3:47114133-47114152 Msa0643800:CDS 55.0%
GAAGACGAGCATGGTACGGT+TGG + chr4_3:47114620-47114639 Msa0643800:CDS 55.0%
! CGATGGACATCAAGCACTGC+GGG + chr4_3:47115768-47115787 Msa0643800:intron 55.0%
! CTTAGGGTTTTCCCCTGGTC+AGG - chr4_3:47116133-47116152 None:intergenic 55.0%
TGTCGTACCGGAGAGACTCA+TGG + chr4_3:47116305-47116324 Msa0643800:intron 55.0%
!! GGAAGCGAAGGCACTAAAGG+AGG + chr4_3:47116401-47116420 Msa0643800:intron 55.0%
CCTCCACCCTCAAGAAGTCT+TGG - chr4_3:47116866-47116885 None:intergenic 55.0%
CCAAGACTTCTTGAGGGTGG+AGG + chr4_3:47116863-47116882 Msa0643800:intron 55.0%
GGACGAGTTAAGGCTTAGGG+TGG + chr4_3:47116980-47116999 Msa0643800:intron 55.0%
CTTGTTTGGGAGGTGGGTCA+AGG - chr4_3:47117180-47117199 None:intergenic 55.0%
GTGGTGCTTGTTTGGGAGGT+GGG - chr4_3:47117186-47117205 None:intergenic 55.0%
TGTGGTGCTTGTTTGGGAGG+TGG - chr4_3:47117187-47117206 None:intergenic 55.0%
TTAGTAGGCCAAGCACTCGC+TGG - chr4_3:47117871-47117890 None:intergenic 55.0%
AGCGAGTGCTTGGCCTACTA+AGG + chr4_3:47117870-47117889 Msa0643800:intron 55.0%
GCGAGTGCTTGGCCTACTAA+GGG + chr4_3:47117871-47117890 Msa0643800:intron 55.0%
! GAACGACGGGATCTCTGAGA+TGG + chr4_3:47118838-47118857 Msa0643800:CDS 55.0%
CAAAAGAATCGCGCAACCGC+CGG - chr4_3:47119200-47119219 None:intergenic 55.0%
AAGAGTCTTCTCTTGCGCCG+TGG - chr4_3:47119285-47119304 None:intergenic 55.0%
GAAGATGAGCAGGGTAGGCT+TGG + chr4_3:47119325-47119344 Msa0643800:CDS 55.0%
!! TCGTCAGGGTACCGATCCTG+AGG - chr4_3:47115751-47115770 None:intergenic 60.0%
CAGGATCGGTACCCTGACGA+TGG + chr4_3:47115751-47115770 Msa0643800:intron 60.0%
TACCCTTCGTCCTTGGGCGT+GGG - chr4_3:47115796-47115815 None:intergenic 60.0%
ATACCCTTCGTCCTTGGGCG+TGG - chr4_3:47115797-47115816 None:intergenic 60.0%
ACCTGTGACCTGCCTGACCA+GGG + chr4_3:47116118-47116137 Msa0643800:intron 60.0%
!! GGAGCATCGGGCAAGACATG+AGG + chr4_3:47116359-47116378 Msa0643800:intron 60.0%
AGGCCAAGCACTCGCTGGTA+TGG - chr4_3:47117866-47117885 None:intergenic 60.0%
CACCCACGCCCAAGGACGAA+GGG + chr4_3:47115791-47115810 Msa0643800:intron 65.0%
CTGGTCAGGCAGGTCACAGG+TGG - chr4_3:47116119-47116138 None:intergenic 65.0%
CACCTGTGACCTGCCTGACC+AGG + chr4_3:47116117-47116136 Msa0643800:intron 65.0%
CCTGTGACCTGCCTGACCAG+GGG + chr4_3:47116119-47116138 Msa0643800:intron 65.0%
! GGGTTTTCCCCTGGTCAGGC+AGG - chr4_3:47116129-47116148 None:intergenic 65.0%
!! TTCTGGAGTTCGCGCGGCTG+AGG + chr4_3:47117468-47117487 Msa0643800:intron 65.0%
! TCTGGAGTTCGCGCGGCTGA+GGG + chr4_3:47117469-47117488 Msa0643800:intron 65.0%
GAATCGCGCAACCGCCGGAA+CGG - chr4_3:47119195-47119214 None:intergenic 65.0%
GCACCCACGCCCAAGGACGA+AGG + chr4_3:47115790-47115809 Msa0643800:intron 70.0%
CCCCTGGTCAGGCAGGTCAC+AGG - chr4_3:47116122-47116141 None:intergenic 70.0%
ACTGCGGGCACCCACGCCCA+AGG + chr4_3:47115783-47115802 Msa0643800:intron 75.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 47113837 47119957 47113837 ID=Msa0643800;Name=Msa0643800
chr4_3 mRNA 47113837 47119957 47113837 ID=Msa0643800-mRNA-1;Parent=Msa0643800;Name=Msa0643800-mRNA-1;_AED=0.07;_eAED=0.07;_QI=0|0|0|1|0|0|7|0|837
chr4_3 exon 47113837 47114062 47113837 ID=Msa0643800-mRNA-1:exon:11160;Parent=Msa0643800-mRNA-1
chr4_3 exon 47114111 47114347 47114111 ID=Msa0643800-mRNA-1:exon:11161;Parent=Msa0643800-mRNA-1
chr4_3 exon 47114363 47114558 47114363 ID=Msa0643800-mRNA-1:exon:11162;Parent=Msa0643800-mRNA-1
chr4_3 exon 47114571 47114781 47114571 ID=Msa0643800-mRNA-1:exon:11163;Parent=Msa0643800-mRNA-1
chr4_3 exon 47114803 47114989 47114803 ID=Msa0643800-mRNA-1:exon:11164;Parent=Msa0643800-mRNA-1
chr4_3 exon 47115044 47115254 47115044 ID=Msa0643800-mRNA-1:exon:11165;Parent=Msa0643800-mRNA-1
chr4_3 exon 47118712 47119957 47118712 ID=Msa0643800-mRNA-1:exon:11166;Parent=Msa0643800-mRNA-1
chr4_3 CDS 47113837 47114062 47113837 ID=Msa0643800-mRNA-1:cds;Parent=Msa0643800-mRNA-1
chr4_3 CDS 47114111 47114347 47114111 ID=Msa0643800-mRNA-1:cds;Parent=Msa0643800-mRNA-1
chr4_3 CDS 47114363 47114558 47114363 ID=Msa0643800-mRNA-1:cds;Parent=Msa0643800-mRNA-1
chr4_3 CDS 47114571 47114781 47114571 ID=Msa0643800-mRNA-1:cds;Parent=Msa0643800-mRNA-1
chr4_3 CDS 47114803 47114989 47114803 ID=Msa0643800-mRNA-1:cds;Parent=Msa0643800-mRNA-1
chr4_3 CDS 47115044 47115254 47115044 ID=Msa0643800-mRNA-1:cds;Parent=Msa0643800-mRNA-1
chr4_3 CDS 47118712 47119957 47118712 ID=Msa0643800-mRNA-1:cds;Parent=Msa0643800-mRNA-1
Gene Sequence

>Msa0643800

ATGGAGTTCCTCTATTTACTTTATGTGTTTCTAGCATTGTACATATGTTTCCTAATTTGGAAACTATTCGATCAAAAGAGGGACCAAGAGTGTTACATATTAGATTACCAATGTTACAAGCCAACACAAGATAGAATGCTAGGGACAGAGTTTTGTGGCAAATTAATCAGAAGAACGGAAAATTTGGGTCTAAATGAGTACAAATTTCTGCTCAAAGCCATTGTAAGCCGCGAAGCATCACCAACACTGAACGACGGGATCTCAGAGATGGAAGAGTTTTTCGACGACAGCATTGCAAAACTCCTTGCAAGATCGGCTATTTCCCCTTCCGAAATCGATGTTCTTGTTGTCAACATCTCAATGTTCACCTCTGTTCCCTCACTATCATCGCTTATCATTAATCGTTACAAAATGAGACACGACGTAAAAGTGTACAATATCACTGGAATGGGTTGTAGTGCTAATATTGTTAAAAACATTTTCAAATCACAAAGAAACAAGGTAGCACTTTTGGTCACATCAGAGTCTCTTAGTCCAAATTGGTATCCTGGCAATGATAGATCAATGATCTTAGCCAATTGTCTTTTTCGCACCGGTGGTTGTGCCATTCTTTTGACAAACAAAAGATCCTTAAAGAACAAAAGTATATTGAAATTGAAGACGCATCACGGCGCCAGAGATGACTCGTATAATTGTTGCCTTAAAAAGGAAGACGAGCATGGTACGGTTGGTTTTTATTTATCAAAAACTCTCCCATTGGTAGCAACAAGAGCTTTTGTTGAGAATTTAAGGGTAATTTCACCCAAAATTTTGCCAATAAGAGAACTTCTTAGGTTTCTGGTTGTATCACTTTTTAAGAAACTCAAGATATCTTCTAGTGGTGGAGGAACAAGAACTACTAAATCACCATTGAATTTTAAAACTGGTGTTGATCATTTTTGCCTCCATACAGGAGGAAAAGCAGTGATTGATGGAATTGGAAAGAGTTTAGATCTAAGTGAATATGATCTTGATCCAGCAAGAATGACACTACATCGTTTTGGTAACACTTCTGCTGGTGATAGGGTTTTTATGATAAGCTTTGGTGCTGGATTCAAATGCAATAGTTGCTTATGGGAAGTGATGAAAGATGTTGGAGATGCAAATGTTTGGGAAGATTGTATTGATGATTATCCACCAGAGTCGTTGATCAATCCTTTCATGGAGAAGTATGGTTGGCTCAATGAAGTTGAGGATGCAACCAACTTTGAACTTCCTGATTTTCTTAAAAGAACCAAGAATTTGGGTATAGATGAGTACAAATTTCTCCTCAAAGCCATTGTAAGTTCTGGAATCGGCGAGCAAACTTACGCACCAAGAAACGTCTTTGAAGGCCGCGAATCATCCCCAACACTGAACGACGGGATCTCTGAGATGGAAGAGTTTTTCAACGACAGCATTGCAAAACTCCTTGCTAGATCAGCGATTTCCCCTTCAGAAATTGACGTTCTTGTCGTCAACATCTCAATGCTCGCCATTCTTCCTTCTTTATCGTCGCGAATCATTAACCGTTACAAAATGAGACACGACGTAAAAGTGTACAATCTCACGGGAATGGGTTGTAGTGCAAGTCTTATTTCATTAGACATTGTTAAAAACATTTTCAAATCACAAAGAAATAAGTTAGCACTTTTGGTCACATCAGAGTCTCTTAGTCCAAATTGGTACACTGGCAATGATAGATCAATGATCCTAGCCAATTGTCTTTTCCGTTCCGGCGGTTGCGCGATTCTTTTGACAAATAAAAGATCCTTAAAAAACAGAAGCATACTGAAATTGAAGTGTTTAGTACGAACGCACCACGGCGCAAGAGAAGACTCTTACAATTGTTGCATTCAAAAGGAAGATGAGCAGGGTAGGCTTGGTTTTCATTTAGGGAAAACTCTCCCAAAAGCAGCAACAAAAGTCTTTGTTGACAATTTAAGGGTAATTTCACCCAAAATTTTGCCAACAAGGGAATTGCTTAGGTTTCTTCTTGTGTTACTTTTCAAGAAACTTAAAATAGCTACTAGTTCTTCTAAGTCTTCAACTGGTGGAACAATATCTACAAAATCACCATTGAATTTCAAAACTGGTGTTGATCATTTTTGCCTCCATACAGGAGGAAAAGCAGTGATTGATGGAATTGGAATGAGTTTAGATCTAAGTGAATATGATCTTGAGCCAGCAAGGATGACACTACATCGTTTTGGTAACACTTCTGCTGGTAGCTTGTGGTATGTGTTAGGGTACATGGAAGCAAAAAAGAGGCTAAAAAAAGGTGATAGAGTCTTTATGATAAGCTTTGGTGCTGGATTCAAATGCAATAGTTGCTTATGGGAAGTGATGAGAGATGTTGGAGATGCAAATGTTTGGGAAGATTGTATTGATAATTATCCACCAAAGTCTTTGGTCAATTCTTTCATGGAGAAGTATAGTTGGGTCAATGAAGTTGAGGATGTAAACAACTATGATCTTCCTGACTTTCTCAAGTGA
Protein sequence

>Msa0643800

MEFLYLLYVFLALYICFLIWKLFDQKRDQECYILDYQCYKPTQDRMLGTEFCGKLIRRTENLGLNEYKFLLKAIVSREASPTLNDGISEMEEFFDDSIAKLLARSAISPSEIDVLVVNISMFTSVPSLSSLIINRYKMRHDVKVYNITGMGCSANIVKNIFKSQRNKVALLVTSESLSPNWYPGNDRSMILANCLFRTGGCAILLTNKRSLKNKSILKLKTHHGARDDSYNCCLKKEDEHGTVGFYLSKTLPLVATRAFVENLRVISPKILPIRELLRFLVVSLFKKLKISSSGGGTRTTKSPLNFKTGVDHFCLHTGGKAVIDGIGKSLDLSEYDLDPARMTLHRFGNTSAGDRVFMISFGAGFKCNSCLWEVMKDVGDANVWEDCIDDYPPESLINPFMEKYGWLNEVEDATNFELPDFLKRTKNLGIDEYKFLLKAIVSSGIGEQTYAPRNVFEGRESSPTLNDGISEMEEFFNDSIAKLLARSAISPSEIDVLVVNISMLAILPSLSSRIINRYKMRHDVKVYNLTGMGCSASLISLDIVKNIFKSQRNKLALLVTSESLSPNWYTGNDRSMILANCLFRSGGCAILLTNKRSLKNRSILKLKCLVRTHHGAREDSYNCCIQKEDEQGRLGFHLGKTLPKAATKVFVDNLRVISPKILPTRELLRFLLVLLFKKLKIATSSSKSSTGGTISTKSPLNFKTGVDHFCLHTGGKAVIDGIGMSLDLSEYDLEPARMTLHRFGNTSAGSLWYVLGYMEAKKRLKKGDRVFMISFGAGFKCNSCLWEVMRDVGDANVWEDCIDNYPPKSLVNSFMEKYSWVNEVEDVNNYDLPDFLK*