Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0026910 | Msa0434200 | 0.800383 | 1.478653e-48 | -8.615850e-47 |
| Msa0044000 | Msa0434200 | 0.802049 | 6.744822e-49 | -8.615850e-47 |
| Msa0064970 | Msa0434200 | 0.802288 | 6.022516e-49 | -8.615850e-47 |
| Msa0090320 | Msa0434200 | 0.808790 | 2.604742e-50 | -8.615850e-47 |
| Msa0099210 | Msa0434200 | 0.814875 | 1.232797e-51 | -8.615850e-47 |
| Msa0127800 | Msa0434200 | 0.803221 | 3.865492e-49 | -8.615850e-47 |
| Msa0137640 | Msa0434200 | 0.807147 | 5.826133e-50 | -8.615850e-47 |
| Msa0182740 | Msa0434200 | 0.806906 | 6.551421e-50 | -8.615850e-47 |
| Msa0208090 | Msa0434200 | 0.800751 | 1.244498e-48 | -8.615850e-47 |
| Msa0434200 | Msa0784290 | 0.816409 | 5.612539e-52 | -8.615850e-47 |
| Msa0434200 | Msa0832340 | 0.808635 | 2.810979e-50 | -8.615850e-47 |
| Msa0434200 | Msa0858980 | 0.807095 | 5.975036e-50 | -8.615850e-47 |
| Msa0434200 | Msa0899430 | 0.812141 | 4.922301e-51 | -8.615850e-47 |
| Msa0434200 | Msa0899450 | 0.808091 | 3.671647e-50 | -8.615850e-47 |
| Msa0434200 | Msa0958550 | 0.806519 | 7.908321e-50 | -8.615850e-47 |
| Msa0434200 | Msa1120740 | 0.802335 | 5.892059e-49 | -8.615850e-47 |
| Msa0434200 | Msa1121490 | 0.801115 | 1.048471e-48 | -8.615850e-47 |
| Msa0434200 | Msa1248310 | 0.800490 | 1.406341e-48 | -8.615850e-47 |
| Msa0434200 | Msa1248370 | 0.813503 | 2.477195e-51 | -8.615850e-47 |
| Msa0434200 | Msa1284680 | 0.804258 | 2.355510e-49 | -8.615850e-47 |
| Msa0434200 | Msa1420820 | 0.824486 | 7.866306e-54 | -8.615850e-47 |
| Msa0251320 | Msa0434200 | 0.813523 | 2.451585e-51 | -8.615850e-47 |
| Msa0342750 | Msa0434200 | 0.811639 | 6.331794e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 18 sgRNAs with CRISPR-Local
Find 285 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAATGACTTGTAGAAATTT+TGG | 0.145122 | 3_2:-86973236 | Msa0434200:five_prime_UTR |
| AAATTTCTTGAAGAAGAAAA+AGG | 0.247818 | 3_2:-86972790 | Msa0434200:CDS |
| GGGTGTTGTGGGTTGCAATT+AGG | 0.275712 | 3_2:-86973369 | None:intergenic |
| ACTGTGTTTGTACGAACAAT+GGG | 0.405702 | 3_2:-86972735 | Msa0434200:CDS |
| GTTTATTGTTATTTCCTAAA+CGG | 0.413908 | 3_2:-86973186 | Msa0434200:five_prime_UTR |
| AGAGAGCAAATAAACCGTTT+AGG | 0.438656 | 3_2:+86973172 | None:intergenic |
| TGTCACAGCTGATGACATCT+TGG | 0.438737 | 3_2:-86973279 | Msa0434200:five_prime_UTR |
| TGTTGACAAATGAACTGAAA+TGG | 0.449320 | 3_2:-86973102 | Msa0434200:exon |
| TTTGAAAGATTGACGATGCA+AGG | 0.513961 | 3_2:-86973138 | Msa0434200:five_prime_UTR |
| TCAGTTCATTTGTCAACAAG+AGG | 0.538482 | 3_2:+86973107 | None:intergenic |
| AGGCATGGCAATCGTATATG+TGG | 0.545636 | 3_2:-86968715 | Msa0434200:CDS |
| GTCACAGCTGATGACATCTT+GGG | 0.548941 | 3_2:-86973278 | Msa0434200:five_prime_UTR |
| TGTACGAACAATGGGGATGA+AGG | 0.551846 | 3_2:-86972727 | Msa0434200:CDS |
| TACTGTGTTTGTACGAACAA+TGG | 0.577699 | 3_2:-86972736 | Msa0434200:CDS |
| GTACGAACAATGGGGATGAA+GGG | 0.623308 | 3_2:-86972726 | Msa0434200:intron |
| GTGCACGACAGTTCAACATA+CGG | 0.627079 | 3_2:+86968627 | None:intergenic |
| GCAATCGTATATGTGGATTG+TGG | 0.658781 | 3_2:-86968708 | Msa0434200:CDS |
| CTGTGTTTGTACGAACAATG+GGG | 0.773596 | 3_2:-86972734 | Msa0434200:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTGGTAATAAAAATAAAATA+TGG | + | chr3_2:86969843-86969862 | None:intergenic | 10.0% |
| !! | AGTAAAAAAAACATAATAAA+CGG | - | chr3_2:86970755-86970774 | Msa0434200:intron | 10.0% |
| !!! | TGAAGAAATTAAAATTTTAA+GGG | + | chr3_2:86971930-86971949 | None:intergenic | 10.0% |
| !!! | AATTTATTTTGAAATCATTT+GGG | + | chr3_2:86972581-86972600 | None:intergenic | 10.0% |
| !!! | AAATTTATTTTGAAATCATT+TGG | + | chr3_2:86972582-86972601 | None:intergenic | 10.0% |
| !!! | AATTAACCAGTTTTAAAAAA+AGG | - | chr3_2:86969612-86969631 | Msa0434200:intron | 15.0% |
| !!! | TGATTTTTGACTAATAATAA+AGG | - | chr3_2:86969728-86969747 | Msa0434200:intron | 15.0% |
| !!! | GATTTTTGACTAATAATAAA+GGG | - | chr3_2:86969729-86969748 | Msa0434200:intron | 15.0% |
| !! | AACATGTATTCAATTAAAAA+TGG | - | chr3_2:86970922-86970941 | Msa0434200:intron | 15.0% |
| !! | AATAAAAATTACAGTACAAT+TGG | - | chr3_2:86971019-86971038 | Msa0434200:intron | 15.0% |
| !!! | AATTTTTTTGTATCATTTTC+TGG | + | chr3_2:86971389-86971408 | None:intergenic | 15.0% |
| !!! | GTGAAGAAATTAAAATTTTA+AGG | + | chr3_2:86971931-86971950 | None:intergenic | 15.0% |
| !! | TGAAGAAATTAATCATATTA+GGG | + | chr3_2:86972553-86972572 | None:intergenic | 15.0% |
| !! | ATGAAGAAATTAATCATATT+AGG | + | chr3_2:86972554-86972573 | None:intergenic | 15.0% |
| !! | AAATAAGAATGAGATATTTA+AGG | - | chr3_2:86973173-86973192 | Msa0434200:five_prime_UTR | 15.0% |
| !!! | GTTTATTGTTATTTCCTAAA+CGG | - | chr3_2:86968807-86968826 | Msa0434200:intron | 20.0% |
| !! | GCTAGCATATTAAAATATAA+AGG | - | chr3_2:86968983-86969002 | Msa0434200:intron | 20.0% |
| !! | GCATATTAAAATATAAAGGA+TGG | - | chr3_2:86968987-86969006 | Msa0434200:intron | 20.0% |
| !! | AAATTTCTTGAAGAAGAAAA+AGG | - | chr3_2:86969203-86969222 | Msa0434200:intron | 20.0% |
| !! | AATTTCTTGAAGAAGAAAAA+GGG | - | chr3_2:86969204-86969223 | Msa0434200:intron | 20.0% |
| !!! | ATATGACCATAATTTTACAA+AGG | - | chr3_2:86970032-86970051 | Msa0434200:intron | 20.0% |
| !!! | ATATAACCACAATTTTACAA+TGG | - | chr3_2:86970231-86970250 | Msa0434200:intron | 20.0% |
| !!! | TGACTACATTTTATGTTTAT+TGG | + | chr3_2:86970339-86970358 | None:intergenic | 20.0% |
| !!! | AATTTTCACAAGATATTTCT+AGG | - | chr3_2:86970402-86970421 | Msa0434200:intron | 20.0% |
| !! | AGGTGAATATTATTCTATAT+AGG | - | chr3_2:86972263-86972282 | Msa0434200:intron | 20.0% |
| !!! | TTTTTCTTGAATCTTGTATT+TGG | + | chr3_2:86972614-86972633 | None:intergenic | 20.0% |
| !! | TTAATGATTAGATCAAGTAA+AGG | + | chr3_2:86973226-86973245 | None:intergenic | 20.0% |
| !!! | TCAATGACTTGTAGAAATTT+TGG | - | chr3_2:86968757-86968776 | Msa0434200:intron | 25.0% |
| !! | AAATTTTGGACAAATGCATA+AGG | - | chr3_2:86968771-86968790 | Msa0434200:intron | 25.0% |
| !!! | TAAAGGATGGATATTTTTGT+AGG | - | chr3_2:86969000-86969019 | Msa0434200:intron | 25.0% |
| !! | AGTGATGTGATCTATTTTAT+AGG | - | chr3_2:86969317-86969336 | Msa0434200:intron | 25.0% |
| ! | ATGCTATAAGTACTAAATGT+GGG | + | chr3_2:86969529-86969548 | None:intergenic | 25.0% |
| !!! | GTTACACCTTTTTTTAAAAC+TGG | + | chr3_2:86969621-86969640 | None:intergenic | 25.0% |
| ! | CTCGTAATGAAAATAAATTG+TGG | + | chr3_2:86969643-86969662 | None:intergenic | 25.0% |
| ! | TTCAGTTAAAGGGATATATT+TGG | - | chr3_2:86969695-86969714 | Msa0434200:intron | 25.0% |
| !! | GCTACACATTTGTTAAAATA+TGG | + | chr3_2:86969821-86969840 | None:intergenic | 25.0% |
| ! | TTAGTGAAAGGAATATCTTA+TGG | - | chr3_2:86969896-86969915 | Msa0434200:intron | 25.0% |
| ! | GTTACATTCAACTAAAACTA+TGG | + | chr3_2:86969998-86970017 | None:intergenic | 25.0% |
| ! | GTTACACCTTTGTAAAATTA+TGG | + | chr3_2:86970041-86970060 | None:intergenic | 25.0% |
| ! | TTTAACGTAGGATAAAAAGA+TGG | + | chr3_2:86970063-86970082 | None:intergenic | 25.0% |
| !!! | TTAGTTTGATATTTTGAGGT+TGG | + | chr3_2:86970106-86970125 | None:intergenic | 25.0% |
| ! | CTAGTATTTACATGATAAGT+TGG | - | chr3_2:86970154-86970173 | Msa0434200:intron | 25.0% |
| !! | TAAAACGATATAGTTTTCAC+AGG | - | chr3_2:86970179-86970198 | Msa0434200:intron | 25.0% |
| ! | GGTTATATGCTTCAATTATT+TGG | + | chr3_2:86970219-86970238 | None:intergenic | 25.0% |
| !! | TTAATTTTCTGTTGTAAGGT+TGG | + | chr3_2:86970304-86970323 | None:intergenic | 25.0% |
| !! | TCTGTTAATTTTCTGTTGTA+AGG | + | chr3_2:86970308-86970327 | None:intergenic | 25.0% |
| !! | ACATAACCACAATTTTACAA+AGG | - | chr3_2:86970443-86970462 | Msa0434200:intron | 25.0% |
| ! | GTTATACCTTTGTAAAATTG+TGG | + | chr3_2:86970452-86970471 | None:intergenic | 25.0% |
| !! | TTAATTTTCTGTTATGAGGT+CGG | + | chr3_2:86970518-86970537 | None:intergenic | 25.0% |
| ! | ACCTCATAACAGAAAATTAA+TGG | - | chr3_2:86970518-86970537 | Msa0434200:intron | 25.0% |
| !! | TCCATTAATTTTCTGTTATG+AGG | + | chr3_2:86970522-86970541 | None:intergenic | 25.0% |
| !! | ATAAGCTGACTTAAATGATA+TGG | - | chr3_2:86970590-86970609 | Msa0434200:intron | 25.0% |
| ! | GGATATATGCTTCAATTATT+TGG | + | chr3_2:86970640-86970659 | None:intergenic | 25.0% |
| ! | GTTTACTCTTTGTAAAATTG+TGG | + | chr3_2:86970661-86970680 | None:intergenic | 25.0% |
| ! | TTTGAACACAGGAAAAAATA+TGG | + | chr3_2:86970683-86970702 | None:intergenic | 25.0% |
| !! | TTAATTTTATGTTGTGAGGT+TGG | + | chr3_2:86970726-86970745 | None:intergenic | 25.0% |
| ! | ACCTCACAACATAAAATTAA+TGG | - | chr3_2:86970726-86970745 | Msa0434200:intron | 25.0% |
| !! | TCCATTAATTTTATGTTGTG+AGG | + | chr3_2:86970730-86970749 | None:intergenic | 25.0% |
| !!! | TAAGATTCAATTGCTGATTT+TGG | - | chr3_2:86971331-86971350 | Msa0434200:intron | 25.0% |
| ! | TACAAAAAAATTGAGCTGAT+AGG | - | chr3_2:86971397-86971416 | Msa0434200:intron | 25.0% |
| !!! | GTCTTTTTTATCAACTAATC+AGG | - | chr3_2:86971422-86971441 | Msa0434200:intron | 25.0% |
| ! | GGTTATACTCTTCAAAAATT+TGG | + | chr3_2:86971551-86971570 | None:intergenic | 25.0% |
| ! | GTATAACCAAAATTTCACAA+AGG | - | chr3_2:86971563-86971582 | Msa0434200:intron | 25.0% |
| !!! | TTAGTTTTCTGTTATGAGTA+TGG | + | chr3_2:86971638-86971657 | None:intergenic | 25.0% |
| ! | AATGATAAATTGCCATAGAA+TGG | - | chr3_2:86971706-86971725 | Msa0434200:intron | 25.0% |
| !!! | TGTCTTTCTGTTTTGTTATT+TGG | + | chr3_2:86971846-86971865 | None:intergenic | 25.0% |
| !!! | AAATTAAAATTTTAAGGGCG+AGG | + | chr3_2:86971925-86971944 | None:intergenic | 25.0% |
| ! | ACTATGCATATAAAAATGAG+AGG | - | chr3_2:86972243-86972262 | Msa0434200:intron | 25.0% |
| !!! | ATTTGTTGGTAATTGCAAAT+GGG | + | chr3_2:86972353-86972372 | None:intergenic | 25.0% |
| !! | TGATTTAGTGAGAGAATTTT+GGG | + | chr3_2:86972522-86972541 | None:intergenic | 25.0% |
| ! | CAATAGAAACTTTGACAAAA+CGG | - | chr3_2:86972659-86972678 | Msa0434200:intron | 25.0% |
| !! | AAAATTGATCTTTGATGACA+TGG | + | chr3_2:86972938-86972957 | None:intergenic | 25.0% |
| ! | AAGGATCTCTAGTAATAAAA+AGG | - | chr3_2:86973192-86973211 | Msa0434200:five_prime_UTR | 25.0% |
| TGTTGACAAATGAACTGAAA+TGG | - | chr3_2:86968891-86968910 | Msa0434200:intron | 30.0% | |
| CATATACAAGATTGTTTGTG+TGG | - | chr3_2:86968954-86968973 | Msa0434200:intron | 30.0% | |
| TTGCATGTTTGACATATTCA+TGG | + | chr3_2:86969371-86969390 | None:intergenic | 30.0% | |
| ! | CTGCACAAATGATAATGTAT+GGG | + | chr3_2:86969413-86969432 | None:intergenic | 30.0% |
| ! | TCTGCACAAATGATAATGTA+TGG | + | chr3_2:86969414-86969433 | None:intergenic | 30.0% |
| TCTTGTTCAAATAAGCTTAG+AGG | - | chr3_2:86969440-86969459 | Msa0434200:intron | 30.0% | |
| TATAAGTACTAAATGTGGGT+TGG | + | chr3_2:86969525-86969544 | None:intergenic | 30.0% | |
| CATGCTATAAGTACTAAATG+TGG | + | chr3_2:86969530-86969549 | None:intergenic | 30.0% | |
| TCCACATGATTTCAGTTAAA+GGG | - | chr3_2:86969685-86969704 | Msa0434200:intron | 30.0% | |
| TTGACTAATAATAAAGGGAG+AGG | - | chr3_2:86969734-86969753 | Msa0434200:intron | 30.0% | |
| AATCATGTGGATAAATTGAG+AGG | + | chr3_2:86969876-86969895 | None:intergenic | 30.0% | |
| !! | ATCCACATGATTTTAGTGAA+AGG | - | chr3_2:86969884-86969903 | Msa0434200:intron | 30.0% |
| TTCCTTTCACTAAAATCATG+TGG | + | chr3_2:86969889-86969908 | None:intergenic | 30.0% | |
| !!! | TGTTTTGTTTGCCAGAATTT+AGG | - | chr3_2:86969967-86969986 | Msa0434200:intron | 30.0% |
| GGTCATATGCTTCAATTATT+TGG | + | chr3_2:86970020-86970039 | None:intergenic | 30.0% | |
| TATATGGGTAACTTTAACGT+AGG | + | chr3_2:86970075-86970094 | None:intergenic | 30.0% | |
| ! | AGGTTGGTCAACTTATATAT+GGG | + | chr3_2:86970090-86970109 | None:intergenic | 30.0% |
| !! | GGCATTAGTTTGATATTTTG+AGG | + | chr3_2:86970110-86970129 | None:intergenic | 30.0% |
| CTAATGCCAAGAAACATAAA+AGG | - | chr3_2:86970122-86970141 | Msa0434200:intron | 30.0% | |
| GTTACACCATTGTAAAATTG+TGG | + | chr3_2:86970240-86970259 | None:intergenic | 30.0% | |
| TTTCGAACGCATGAAAAATA+TGG | + | chr3_2:86970262-86970281 | None:intergenic | 30.0% | |
| TTGAAAGCAGGAAAAAAAGA+TGG | + | chr3_2:86970474-86970493 | None:intergenic | 30.0% | |
| !! | AGATGAGTAATTTTGAAAGC+AGG | + | chr3_2:86970486-86970505 | None:intergenic | 30.0% |
| ! | AGATGAGTAATTTTGAACAC+AGG | + | chr3_2:86970694-86970713 | None:intergenic | 30.0% |
| GCTTGTAGTAATTGAATAGT+GGG | + | chr3_2:86970962-86970981 | None:intergenic | 30.0% | |
| TGCTTGTAGTAATTGAATAG+TGG | + | chr3_2:86970963-86970982 | None:intergenic | 30.0% | |
| TTTGAATTTAGAGACCATAG+AGG | + | chr3_2:86971130-86971149 | None:intergenic | 30.0% | |
| AATCTGAATTTGAATGTGGA+TGG | + | chr3_2:86971175-86971194 | None:intergenic | 30.0% | |
| GATGAATCTGAATTTGAATG+TGG | + | chr3_2:86971179-86971198 | None:intergenic | 30.0% | |
| !! | CCAAATGGCTATTTCAATTT+TGG | + | chr3_2:86971310-86971329 | None:intergenic | 30.0% |
| CCAAAATTGAAATAGCCATT+TGG | - | chr3_2:86971307-86971326 | Msa0434200:intron | 30.0% | |
| GCAATTGAATCTTATCCAAA+TGG | + | chr3_2:86971325-86971344 | None:intergenic | 30.0% | |
| AGAGTCAATCAAATTACCTA+GGG | + | chr3_2:86971488-86971507 | None:intergenic | 30.0% | |
| TAGAGTCAATCAAATTACCT+AGG | + | chr3_2:86971489-86971508 | None:intergenic | 30.0% | |
| TTGCATGCAAGAAAAACATA+TGG | + | chr3_2:86971594-86971613 | None:intergenic | 30.0% | |
| ! | GTTTTTCTTGCATGCAAAAT+TGG | - | chr3_2:86971597-86971616 | Msa0434200:intron | 30.0% |
| GCTAAAACAATACCATTCTA+TGG | + | chr3_2:86971721-86971740 | None:intergenic | 30.0% | |
| !!! | TAGAATGGTATTGTTTTAGC+AGG | - | chr3_2:86971721-86971740 | Msa0434200:intron | 30.0% |
| GTGATGTGTTTGTAAAATTG+TGG | + | chr3_2:86971782-86971801 | None:intergenic | 30.0% | |
| !! | TTTTCATTTAATAGAGCACC+AGG | + | chr3_2:86971891-86971910 | None:intergenic | 30.0% |
| TTTATCTCAAACTTTGCACT+CGG | + | chr3_2:86971953-86971972 | None:intergenic | 30.0% | |
| AAGTTAAGCCATTCTATAGT+TGG | + | chr3_2:86972305-86972324 | None:intergenic | 30.0% | |
| !! | GATTTGTTGGTAATTGCAAA+TGG | + | chr3_2:86972354-86972373 | None:intergenic | 30.0% |
| ! | CTGATTTAGTGAGAGAATTT+TGG | + | chr3_2:86972523-86972542 | None:intergenic | 30.0% |
| ! | TTGAATCTTGTATTTGGTGA+AGG | + | chr3_2:86972608-86972627 | None:intergenic | 30.0% |
| AAGAAAAACTTCACCTTCAA+CGG | - | chr3_2:86972626-86972645 | Msa0434200:intron | 30.0% | |
| !!! | AAGTATTTTAGCCATGTCAT+CGG | - | chr3_2:86972961-86972980 | Msa0434200:intron | 30.0% |
| TATGTCTACAATCCATTACT+AGG | + | chr3_2:86973063-86973082 | None:intergenic | 30.0% | |
| TGAAAAGAGAACAAAGATTG+AGG | - | chr3_2:86973092-86973111 | Msa0434200:intron | 30.0% | |
| GAAAAGAGAACAAAGATTGA+GGG | - | chr3_2:86973093-86973112 | Msa0434200:intron | 30.0% | |
| !!! | TGCAATATTTTTAGCTTCAC+AGG | - | chr3_2:86973258-86973277 | Msa0434200:five_prime_UTR | 30.0% |
| !!! | AGTTTTAGCTCTGATATAAC+TGG | - | chr3_2:86973332-86973351 | Msa0434200:five_prime_UTR | 30.0% |
| AGAGAGCAAATAAACCGTTT+AGG | + | chr3_2:86968824-86968843 | None:intergenic | 35.0% | |
| TTTGAAAGATTGACGATGCA+AGG | - | chr3_2:86968855-86968874 | Msa0434200:intron | 35.0% | |
| TCAGTTCATTTGTCAACAAG+AGG | + | chr3_2:86968889-86968908 | None:intergenic | 35.0% | |
| AGAATACTGAGTTCCTAAGA+GGG | + | chr3_2:86969036-86969055 | None:intergenic | 35.0% | |
| AAGAATACTGAGTTCCTAAG+AGG | + | chr3_2:86969037-86969056 | None:intergenic | 35.0% | |
| AGGGATACACAAACAAATCA+TGG | + | chr3_2:86969069-86969088 | None:intergenic | 35.0% | |
| TACTGTGTTTGTACGAACAA+TGG | - | chr3_2:86969257-86969276 | Msa0434200:intron | 35.0% | |
| ACTGTGTTTGTACGAACAAT+GGG | - | chr3_2:86969258-86969277 | Msa0434200:intron | 35.0% | |
| ATAATGTATGGGTCGAGTAT+GGG | + | chr3_2:86969402-86969421 | None:intergenic | 35.0% | |
| CTCCACATGATTTCAGTTAA+AGG | - | chr3_2:86969684-86969703 | Msa0434200:intron | 35.0% | |
| TCCCTTTAACTGAAATCATG+TGG | + | chr3_2:86969689-86969708 | None:intergenic | 35.0% | |
| ATTGAGAGGAAGAGAGAAAT+TGG | + | chr3_2:86969862-86969881 | None:intergenic | 35.0% | |
| ! | GAGGTTGGTCAACTTATATA+TGG | + | chr3_2:86970091-86970110 | None:intergenic | 35.0% |
| ATGCCAAGAAACATAAAAGG+TGG | - | chr3_2:86970125-86970144 | Msa0434200:intron | 35.0% | |
| ! | TGACCACCTTTTATGTTTCT+TGG | + | chr3_2:86970131-86970150 | None:intergenic | 35.0% |
| GGTTATGTGCTTCAATTATC+TGG | + | chr3_2:86970431-86970450 | None:intergenic | 35.0% | |
| TAGAGTCCAAGAAACGTAAT+AGG | - | chr3_2:86970544-86970563 | Msa0434200:intron | 35.0% | |
| TGATCACCTATTACGTTTCT+TGG | + | chr3_2:86970553-86970572 | None:intergenic | 35.0% | |
| ! | ACGTAATAGGTGATCACTTT+TGG | - | chr3_2:86970557-86970576 | Msa0434200:intron | 35.0% |
| ! | GGTTTTCACATGATAACTTC+AGG | - | chr3_2:86970611-86970630 | Msa0434200:intron | 35.0% |
| ! | TATATCCTTTTAAGCCAACC+TGG | + | chr3_2:86970802-86970821 | None:intergenic | 35.0% |
| !! | GAATTGTCCAAGGTCTTATT+TGG | + | chr3_2:86971100-86971119 | None:intergenic | 35.0% |
| ATAAGACCTTGGACAATTCT+AGG | - | chr3_2:86971101-86971120 | Msa0434200:intron | 35.0% | |
| AAATTCAGATTCATCACACC+TGG | - | chr3_2:86971184-86971203 | Msa0434200:intron | 35.0% | |
| ! | TGAGATTTGATGCTGGATTT+TGG | + | chr3_2:86971233-86971252 | None:intergenic | 35.0% |
| GTTAAAGTGAGATTTGATGC+TGG | + | chr3_2:86971240-86971259 | None:intergenic | 35.0% | |
| TAACAGTAGCAATTGCAGAA+TGG | - | chr3_2:86971256-86971275 | Msa0434200:intron | 35.0% | |
| TTTGCAAGTTAGGAACAAGA+TGG | + | chr3_2:86971361-86971380 | None:intergenic | 35.0% | |
| ! | TCTGGAAGATTTTGCAAGTT+AGG | + | chr3_2:86971371-86971390 | None:intergenic | 35.0% |
| ! | GTTACGCCTTTGTGAAATTT+TGG | + | chr3_2:86971572-86971591 | None:intergenic | 35.0% |
| GGTTACACGCTTCAAATATT+TGG | + | chr3_2:86971761-86971780 | None:intergenic | 35.0% | |
| GCGGTGATATATTTGTAACT+TGG | + | chr3_2:86971869-86971888 | None:intergenic | 35.0% | |
| TCGCTAAATCTCTCTATTGA+AGG | + | chr3_2:86971981-86972000 | None:intergenic | 35.0% | |
| TCAATAGAGAGATTTAGCGA+CGG | - | chr3_2:86971981-86972000 | Msa0434200:intron | 35.0% | |
| TTCGAGGAAAATTGCAAAGA+CGG | - | chr3_2:86972031-86972050 | Msa0434200:intron | 35.0% | |
| ! | TGGTTACAGTGTAGTTTTTG+TGG | + | chr3_2:86972097-86972116 | None:intergenic | 35.0% |
| GTGATTGTATTTGTACGTTC+TGG | + | chr3_2:86972117-86972136 | None:intergenic | 35.0% | |
| CCAATCATTTAGTCTCTCTT+TGG | + | chr3_2:86972203-86972222 | None:intergenic | 35.0% | |
| CCAAAGAGAGACTAAATGAT+TGG | - | chr3_2:86972200-86972219 | Msa0434200:intron | 35.0% | |
| GACACAAACCAACTATAGAA+TGG | - | chr3_2:86972294-86972313 | Msa0434200:intron | 35.0% | |
| TTGTCTGATTGTTGCATTCT+GGG | + | chr3_2:86972432-86972451 | None:intergenic | 35.0% | |
| ATTGTCTGATTGTTGCATTC+TGG | + | chr3_2:86972433-86972452 | None:intergenic | 35.0% | |
| ! | GACTTTTGGATCGTATTTGT+TGG | - | chr3_2:86972713-86972732 | Msa0434200:intron | 35.0% |
| !! | TTTTGGATCGTATTTGTTGG+AGG | - | chr3_2:86972716-86972735 | Msa0434200:intron | 35.0% |
| !!! | TATTTTTAGCTTCACAGGCA+TGG | - | chr3_2:86973263-86973282 | Msa0434200:five_prime_UTR | 35.0% |
| AAGATTGTTTGTGTGGTGCT+TGG | - | chr3_2:86968961-86968980 | Msa0434200:intron | 40.0% | |
| AGGATTTGTGTATCCCTCTT+AGG | - | chr3_2:86969020-86969039 | Msa0434200:intron | 40.0% | |
| !! | TCCATGGCATTGTTCTAAGA+GGG | + | chr3_2:86969088-86969107 | None:intergenic | 40.0% |
| ! | ATCCATGGCATTGTTCTAAG+AGG | + | chr3_2:86969089-86969108 | None:intergenic | 40.0% |
| CTTAGAACAATGCCATGGAT+TGG | - | chr3_2:86969089-86969108 | Msa0434200:intron | 40.0% | |
| CACACAAAATCACCAATCCA+TGG | + | chr3_2:86969104-86969123 | None:intergenic | 40.0% | |
| CTGTGTTTGTACGAACAATG+GGG | - | chr3_2:86969259-86969278 | Msa0434200:intron | 40.0% | |
| GATAATGTATGGGTCGAGTA+TGG | + | chr3_2:86969403-86969422 | None:intergenic | 40.0% | |
| GTACTTATAGCATGAGTGAG+AGG | - | chr3_2:86969536-86969555 | Msa0434200:intron | 40.0% | |
| AATGATCCTCTGTGTTTCAC+AGG | - | chr3_2:86969759-86969778 | Msa0434200:intron | 40.0% | |
| CTAAAACCTGTGAAACACAG+AGG | + | chr3_2:86969768-86969787 | None:intergenic | 40.0% | |
| ! | GGTTAAGTGCAGCTCATTTT+TGG | + | chr3_2:86969800-86969819 | None:intergenic | 40.0% |
| CTATGGTTACGCCTAAATTC+TGG | + | chr3_2:86969981-86970000 | None:intergenic | 40.0% | |
| !!! | CTTTTGAAATTTCCCTTGCC+AGG | - | chr3_2:86970781-86970800 | Msa0434200:intron | 40.0% |
| TCAATTACTACAAGCAGCAG+AGG | - | chr3_2:86970967-86970986 | Msa0434200:intron | 40.0% | |
| CAACCATCCAAATAAGACCT+TGG | - | chr3_2:86971090-86971109 | Msa0434200:intron | 40.0% | |
| !! | TGTCCAAGGTCTTATTTGGA+TGG | + | chr3_2:86971096-86971115 | None:intergenic | 40.0% |
| !! | ACAATTCTAGGACTCCTCTA+TGG | - | chr3_2:86971113-86971132 | Msa0434200:intron | 40.0% |
| CTGAATTTGAATGTGGATGG+AGG | + | chr3_2:86971172-86971191 | None:intergenic | 40.0% | |
| AGTAAGAACATGATGTCCCT+AGG | - | chr3_2:86971469-86971488 | Msa0434200:intron | 40.0% | |
| !!! | ACCTTGTTTTCTTGAACGCA+GGG | + | chr3_2:86971816-86971835 | None:intergenic | 40.0% |
| !!! | TACCTTGTTTTCTTGAACGC+AGG | + | chr3_2:86971817-86971836 | None:intergenic | 40.0% |
| GTTACAAATATATCACCGCC+TGG | - | chr3_2:86971870-86971889 | Msa0434200:intron | 40.0% | |
| ! | TCATTTAATAGAGCACCAGG+CGG | + | chr3_2:86971888-86971907 | None:intergenic | 40.0% |
| CAATAGAGAGATTTAGCGAC+GGG | - | chr3_2:86971982-86972001 | Msa0434200:intron | 40.0% | |
| AGGAAAATTGCAAAGACGGA+GGG | - | chr3_2:86972035-86972054 | Msa0434200:intron | 40.0% | |
| ! | TTGGTAATTGCAAATGGGTC+TGG | + | chr3_2:86972348-86972367 | None:intergenic | 40.0% |
| ! | GTTGCTACTGTCTGATTTGT+TGG | + | chr3_2:86972367-86972386 | None:intergenic | 40.0% |
| AAACGGTAACTGTTGAATCG+CGG | - | chr3_2:86972676-86972695 | Msa0434200:intron | 40.0% | |
| AGAGGTTAATTAAGCTGTCG+CGG | - | chr3_2:86972749-86972768 | Msa0434200:CDS | 40.0% | |
| !!! | TATTTTAGCCATGTCATCGG+TGG | - | chr3_2:86972964-86972983 | Msa0434200:intron | 40.0% |
| ! | ATGAGGGGGTGTATAACATT+TGG | - | chr3_2:86972988-86973007 | Msa0434200:intron | 40.0% |
| GCTAGAGAAGCTGCAAAAAA+GGG | + | chr3_2:86973032-86973051 | None:intergenic | 40.0% | |
| TGCTAGAGAAGCTGCAAAAA+AGG | + | chr3_2:86973033-86973052 | None:intergenic | 40.0% | |
| ! | TTTTTGCAGCTTCTCTAGCA+TGG | - | chr3_2:86973033-86973052 | Msa0434200:intron | 40.0% |
| ! | TTTTGCAGCTTCTCTAGCAT+GGG | - | chr3_2:86973034-86973053 | Msa0434200:intron | 40.0% |
| ! | GCAATCGTATATGTGGATTG+TGG | - | chr3_2:86973285-86973304 | Msa0434200:five_prime_UTR | 40.0% |
| TGTCACAGCTGATGACATCT+TGG | - | chr3_2:86968714-86968733 | Msa0434200:CDS | 45.0% | |
| GTCACAGCTGATGACATCTT+GGG | - | chr3_2:86968715-86968734 | Msa0434200:CDS | 45.0% | |
| TCCCTCTTAGAACAATGCCA+TGG | - | chr3_2:86969084-86969103 | Msa0434200:intron | 45.0% | |
| TGTACGAACAATGGGGATGA+AGG | - | chr3_2:86969266-86969285 | Msa0434200:intron | 45.0% | |
| GTACGAACAATGGGGATGAA+GGG | - | chr3_2:86969267-86969286 | Msa0434200:intron | 45.0% | |
| TGAAATTTCCCTTGCCAGGT+TGG | - | chr3_2:86970785-86970804 | Msa0434200:intron | 45.0% | |
| ! | CTTTTAAGCCAACCTGGCAA+GGG | + | chr3_2:86970796-86970815 | None:intergenic | 45.0% |
| AGGAGTCCTAGAATTGTCCA+AGG | + | chr3_2:86971110-86971129 | None:intergenic | 45.0% | |
| TGTGGATGGAGGATGCTTTA+AGG | + | chr3_2:86971161-86971180 | None:intergenic | 45.0% | |
| TCAGATTCATCACACCTGGT+TGG | - | chr3_2:86971188-86971207 | Msa0434200:intron | 45.0% | |
| CAGATTCATCACACCTGGTT+GGG | - | chr3_2:86971189-86971208 | Msa0434200:intron | 45.0% | |
| AGATTCATCACACCTGGTTG+GGG | - | chr3_2:86971190-86971209 | Msa0434200:intron | 45.0% | |
| CTCGTTTGTGCTTGAAAGTC+TGG | + | chr3_2:86971451-86971470 | None:intergenic | 45.0% | |
| TGAACGCAGGGGAAAAAACA+TGG | + | chr3_2:86971804-86971823 | None:intergenic | 45.0% | |
| !!! | CCTTGTTTTCTTGAACGCAG+GGG | + | chr3_2:86971815-86971834 | None:intergenic | 45.0% |
| CTTTGACGCGAAAATAGAGC+CGG | - | chr3_2:86972006-86972025 | Msa0434200:intron | 45.0% | |
| TTTGACGCGAAAATAGAGCC+GGG | - | chr3_2:86972007-86972026 | Msa0434200:intron | 45.0% | |
| ! | TTGCAATTTTCCTCGAAGCC+CGG | + | chr3_2:86972028-86972047 | None:intergenic | 45.0% |
| GAGGAAAATTGCAAAGACGG+AGG | - | chr3_2:86972034-86972053 | Msa0434200:intron | 45.0% | |
| AAAATTGCAAAGACGGAGGG+AGG | - | chr3_2:86972038-86972057 | Msa0434200:intron | 45.0% | |
| CACCACGCAAAGATAGATGT+AGG | - | chr3_2:86972065-86972084 | Msa0434200:intron | 45.0% | |
| CTCCTACATCTATCTTTGCG+TGG | + | chr3_2:86972070-86972089 | None:intergenic | 45.0% | |
| ATCAGACTTTACGCCATCAG+CGG | - | chr3_2:86972172-86972191 | Msa0434200:intron | 45.0% | |
| TCACCTTCAACGGAGAGATT+CGG | - | chr3_2:86972636-86972655 | Msa0434200:intron | 45.0% | |
| ! | AAGGAGATCGCAGTGACTTT+TGG | - | chr3_2:86972699-86972718 | Msa0434200:intron | 45.0% |
| ! | GGATCGTATTTGTTGGAGGA+AGG | - | chr3_2:86972720-86972739 | Msa0434200:intron | 45.0% |
| TAATTAAGCTGTCGCGGTTG+AGG | - | chr3_2:86972755-86972774 | Msa0434200:CDS | 45.0% | |
| AATTAAGCTGTCGCGGTTGA+GGG | - | chr3_2:86972756-86972775 | Msa0434200:CDS | 45.0% | |
| AGAGATGGAGGGAGAGATTT+CGG | - | chr3_2:86972779-86972798 | Msa0434200:CDS | 45.0% | |
| AGGCATGGCAATCGTATATG+TGG | - | chr3_2:86973278-86973297 | Msa0434200:five_prime_UTR | 45.0% | |
| !! | TAATATTAATGAAAAATATA+TGG | + | chr3_2:86969160-86969179 | None:intergenic | 5.0% |
| TGCAATGACAAACCAGCGTG+TGG | - | chr3_2:86969122-86969141 | Msa0434200:intron | 50.0% | |
| ACAAACCAGCGTGTGGACAA+TGG | - | chr3_2:86969129-86969148 | Msa0434200:intron | 50.0% | |
| ! | CCTTTTAAGCCAACCTGGCA+AGG | + | chr3_2:86970797-86970816 | None:intergenic | 50.0% |
| !! | CCTTGCCAGGTTGGCTTAAA+AGG | - | chr3_2:86970794-86970813 | Msa0434200:intron | 50.0% |
| ACTACAAGCAGCAGAGGCTA+TGG | - | chr3_2:86970973-86970992 | Msa0434200:intron | 50.0% | |
| CTACAAGCAGCAGAGGCTAT+GGG | - | chr3_2:86970974-86970993 | Msa0434200:intron | 50.0% | |
| GATTCATCACACCTGGTTGG+GGG | - | chr3_2:86971191-86971210 | Msa0434200:intron | 50.0% | |
| ATTCATCACACCTGGTTGGG+GGG | - | chr3_2:86971192-86971211 | Msa0434200:intron | 50.0% | |
| CCCCTGCGTTCAAGAAAACA+AGG | - | chr3_2:86971812-86971831 | Msa0434200:intron | 50.0% | |
| CTCTTTGGATGTTCCGCTGA+TGG | + | chr3_2:86972188-86972207 | None:intergenic | 50.0% | |
| TTGCCGAATCTCTCCGTTGA+AGG | + | chr3_2:86972642-86972661 | None:intergenic | 50.0% | |
| GGTAACTGTTGAATCGCGGA+AGG | - | chr3_2:86972680-86972699 | Msa0434200:intron | 50.0% | |
| GAGAGAGAGATGGAGAAAGC+AGG | - | chr3_2:86972820-86972839 | Msa0434200:intron | 50.0% | |
| CCATGTCATCGGTGGTATGA+GGG | - | chr3_2:86972972-86972991 | Msa0434200:intron | 50.0% | |
| CATGTCATCGGTGGTATGAG+GGG | - | chr3_2:86972973-86972992 | Msa0434200:intron | 50.0% | |
| ATGTCATCGGTGGTATGAGG+GGG | - | chr3_2:86972974-86972993 | Msa0434200:intron | 50.0% | |
| CATTGCCATTGTCCACACGC+TGG | + | chr3_2:86969137-86969156 | None:intergenic | 55.0% | |
| TTCATCACACCTGGTTGGGG+GGG | - | chr3_2:86971193-86971212 | Msa0434200:intron | 55.0% | |
| GAAAATAGAGCCGGGCTTCG+AGG | - | chr3_2:86972015-86972034 | Msa0434200:intron | 55.0% | |
| GTTGGAGGAAGGAGATCGAG+AGG | - | chr3_2:86972731-86972750 | Msa0434200:CDS | 55.0% | |
| ATTTCGGCCGTCGGAGGAAA+TGG | - | chr3_2:86972795-86972814 | Msa0434200:CDS | 55.0% | |
| ! | GGAAATGGCGGAGAGAGAGA+TGG | - | chr3_2:86972810-86972829 | Msa0434200:intron | 55.0% |
| CAGGATTCGCTCGTAGAGAG+AGG | - | chr3_2:86972839-86972858 | Msa0434200:intron | 55.0% | |
| TTCGCTCGTAGAGAGAGGTG+AGG | - | chr3_2:86972844-86972863 | Msa0434200:intron | 55.0% | |
| GCCATGTCATCGGTGGTATG+AGG | - | chr3_2:86972971-86972990 | Msa0434200:intron | 55.0% | |
| CCCTCATACCACCGATGACA+TGG | + | chr3_2:86972975-86972994 | None:intergenic | 55.0% | |
| TGCAGCTTCTCTAGCATGGG+CGG | - | chr3_2:86973037-86973056 | Msa0434200:intron | 55.0% | |
| TAGCATGGGCGGCCTAGTAA+TGG | - | chr3_2:86973048-86973067 | Msa0434200:intron | 55.0% | |
| TCATCACACCTGGTTGGGGG+GGG | - | chr3_2:86971194-86971213 | Msa0434200:intron | 60.0% | |
| TGTCGCGGTTGAGGGAGAGA+TGG | - | chr3_2:86972764-86972783 | Msa0434200:CDS | 60.0% | |
| GCGGTTGAGGGAGAGATGGA+GGG | - | chr3_2:86972768-86972787 | Msa0434200:CDS | 60.0% | |
| GAGGGAGAGATTTCGGCCGT+CGG | - | chr3_2:86972786-86972805 | Msa0434200:CDS | 60.0% | |
| CTCTCCGCCATTTCCTCCGA+CGG | + | chr3_2:86972805-86972824 | None:intergenic | 60.0% | |
| CATCACACCTGGTTGGGGGG+GGG | - | chr3_2:86971195-86971214 | Msa0434200:intron | 65.0% | |
| ATCACACCTGGTTGGGGGGG+GGG | - | chr3_2:86971196-86971215 | Msa0434200:intron | 65.0% | |
| CGCGGTTGAGGGAGAGATGG+AGG | - | chr3_2:86972767-86972786 | Msa0434200:CDS | 65.0% | |
| GGAGAGATTTCGGCCGTCGG+AGG | - | chr3_2:86972789-86972808 | Msa0434200:CDS | 65.0% | |
| TCGGCCGTCGGAGGAAATGG+CGG | - | chr3_2:86972798-86972817 | Msa0434200:CDS | 65.0% | |
| TCACACCTGGTTGGGGGGGG+GGG | - | chr3_2:86971197-86971216 | Msa0434200:intron | 70.0% | |
| CACACCTGGTTGGGGGGGGG+GGG | - | chr3_2:86971198-86971217 | Msa0434200:intron | 75.0% | |
| ACACCTGGTTGGGGGGGGGG+GGG | - | chr3_2:86971199-86971218 | Msa0434200:intron | 75.0% | |
| ! | CACCTGGTTGGGGGGGGGGG+GGG | - | chr3_2:86971200-86971219 | Msa0434200:intron | 80.0% |
| ! | ACCTGGTTGGGGGGGGGGGG+GGG | - | chr3_2:86971201-86971220 | Msa0434200:intron | 80.0% |
| ! | CCTGGTTGGGGGGGGGGGGG+GGG | - | chr3_2:86971202-86971221 | Msa0434200:intron | 85.0% |
| ! | CTGGTTGGGGGGGGGGGGGG+GGG | - | chr3_2:86971203-86971222 | Msa0434200:intron | 85.0% |
| ! | TGGTTGGGGGGGGGGGGGGG+GGG | - | chr3_2:86971204-86971223 | Msa0434200:intron | 85.0% |
| ! | CCCCCCCCCCCCCCCCAACC+AGG | + | chr3_2:86971205-86971224 | None:intergenic | 90.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 86968639 | 86973376 | 86968639 | ID=Msa0434200;Name=Msa0434200 |
| chr3_2 | mRNA | 86968639 | 86973376 | 86968639 | ID=Msa0434200-mRNA-1;Parent=Msa0434200;Name=Msa0434200-mRNA-1;_AED=0.53;_eAED=0.53;_QI=271|0.5|0.33|0.66|0|0|3|0|65 |
| chr3_2 | exon | 86968639 | 86968735 | 86968639 | ID=Msa0434200-mRNA-1:exon:25266;Parent=Msa0434200-mRNA-1 |
| chr3_2 | exon | 86972727 | 86972818 | 86972727 | ID=Msa0434200-mRNA-1:exon:25265;Parent=Msa0434200-mRNA-1 |
| chr3_2 | exon | 86973097 | 86973376 | 86973097 | ID=Msa0434200-mRNA-1:exon:25264;Parent=Msa0434200-mRNA-1 |
| chr3_2 | five_prime_UTR | 86973106 | 86973376 | 86973106 | ID=Msa0434200-mRNA-1:five_prime_utr;Parent=Msa0434200-mRNA-1 |
| chr3_2 | CDS | 86973097 | 86973105 | 86973097 | ID=Msa0434200-mRNA-1:cds;Parent=Msa0434200-mRNA-1 |
| chr3_2 | CDS | 86972727 | 86972818 | 86972727 | ID=Msa0434200-mRNA-1:cds;Parent=Msa0434200-mRNA-1 |
| chr3_2 | CDS | 86968639 | 86968735 | 86968639 | ID=Msa0434200-mRNA-1:cds;Parent=Msa0434200-mRNA-1 |
| Gene Sequence |
| Protein sequence |
