Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0099210 | XP_013465885.1 | 97.115 | 104 | 3 | 0 | 1 | 104 | 16 | 119 | 2.68e-66 | 205 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0099210 | A0A072VEC4 | 97.115 | 104 | 3 | 0 | 1 | 104 | 16 | 119 | 1.28e-66 | 205 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0032080 | Msa0099210 | 0.801779 | 7.664922e-49 | -8.615850e-47 |
Msa0044000 | Msa0099210 | 0.823061 | 1.695985e-53 | -8.615850e-47 |
Msa0053590 | Msa0099210 | 0.817617 | 3.005545e-52 | -8.615850e-47 |
Msa0079070 | Msa0099210 | 0.811585 | 6.504741e-51 | -8.615850e-47 |
Msa0090570 | Msa0099210 | 0.807675 | 4.501843e-50 | -8.615850e-47 |
Msa0099210 | Msa0127800 | 0.831415 | 1.691155e-55 | -8.615850e-47 |
Msa0099210 | Msa0131770 | 0.832367 | 9.843867e-56 | -8.615850e-47 |
Msa0099210 | Msa0142220 | 0.804507 | 2.089708e-49 | -8.615850e-47 |
Msa0099210 | Msa0172080 | 0.804383 | 2.218051e-49 | -8.615850e-47 |
Msa0099210 | Msa0198910 | 0.811013 | 8.655678e-51 | -8.615850e-47 |
Msa0099210 | Msa0219590 | 0.808506 | 2.995814e-50 | -8.615850e-47 |
Msa0099210 | Msa0223010 | 0.802471 | 5.522897e-49 | -8.615850e-47 |
Msa0099210 | Msa0251320 | 0.811571 | 6.551757e-51 | -8.615850e-47 |
Msa0099210 | Msa0251640 | 0.832615 | 8.544223e-56 | -8.615850e-47 |
Msa0099210 | Msa0257320 | 0.800244 | 1.578313e-48 | -8.615850e-47 |
Msa0099210 | Msa0278190 | 0.805511 | 1.288834e-49 | -8.615850e-47 |
Msa0099210 | Msa0290870 | 0.827372 | 1.622413e-54 | -8.615850e-47 |
Msa0099210 | Msa0305190 | 0.804072 | 2.574197e-49 | -8.615850e-47 |
Msa0099210 | Msa0307540 | 0.832142 | 1.119055e-55 | -8.615850e-47 |
Msa0099210 | Msa0342750 | 0.811581 | 6.518419e-51 | -8.615850e-47 |
Msa0099210 | Msa0363790 | 0.814393 | 1.576510e-51 | -8.615850e-47 |
Msa0099210 | Msa0367870 | 0.808609 | 2.847211e-50 | -8.615850e-47 |
Msa0099210 | Msa0411390 | 0.810902 | 9.146953e-51 | -8.615850e-47 |
Msa0099210 | Msa0428000 | 0.804665 | 1.937110e-49 | -8.615850e-47 |
Msa0099210 | Msa0434200 | 0.814875 | 1.232797e-51 | -8.615850e-47 |
Msa0099210 | Msa0436800 | 0.803507 | 3.373247e-49 | -8.615850e-47 |
Msa0099210 | Msa0455760 | 0.805608 | 1.229786e-49 | -8.615850e-47 |
Msa0099210 | Msa0479340 | 0.814615 | 1.407572e-51 | -8.615850e-47 |
Msa0099210 | Msa0514320 | 0.804143 | 2.488243e-49 | -8.615850e-47 |
Msa0099210 | Msa0518380 | 0.805067 | 1.596430e-49 | -8.615850e-47 |
Msa0099210 | Msa0526070 | -0.813610 | 2.346285e-51 | -8.615850e-47 |
Msa0099210 | Msa0529040 | 0.800093 | 1.694119e-48 | -8.615850e-47 |
Msa0099210 | Msa0613340 | 0.816435 | 5.539380e-52 | -8.615850e-47 |
Msa0099210 | Msa0622170 | -0.820892 | 5.395543e-53 | -8.615850e-47 |
Msa0099210 | Msa0661650 | 0.807970 | 3.896560e-50 | -8.615850e-47 |
Msa0099210 | Msa0731940 | 0.800275 | 1.555302e-48 | -8.615850e-47 |
Msa0099210 | Msa0755180 | 0.802749 | 4.838694e-49 | -8.615850e-47 |
Msa0099210 | Msa0756320 | 0.808057 | 3.734010e-50 | -8.615850e-47 |
Msa0099210 | Msa0768290 | 0.810881 | 9.246665e-51 | -8.615850e-47 |
Msa0099210 | Msa0768310 | 0.811439 | 6.998722e-51 | -8.615850e-47 |
Msa0099210 | Msa0768370 | 0.832399 | 9.664604e-56 | -8.615850e-47 |
Msa0099210 | Msa0773180 | 0.809563 | 1.778507e-50 | -8.615850e-47 |
Msa0099210 | Msa0801780 | 0.811161 | 8.042068e-51 | -8.615850e-47 |
Msa0099210 | Msa0808010 | 0.800439 | 1.440457e-48 | -8.615850e-47 |
Msa0099210 | Msa0810270 | 0.804571 | 2.026471e-49 | -8.615850e-47 |
Msa0099210 | Msa0813000 | 0.801105 | 1.053342e-48 | -8.615850e-47 |
Msa0099210 | Msa0824590 | 0.830090 | 3.570832e-55 | -8.615850e-47 |
Msa0099210 | Msa0832340 | 0.817813 | 2.714406e-52 | -8.615850e-47 |
Msa0099210 | Msa0844490 | 0.839746 | 1.317857e-57 | -8.615850e-47 |
Msa0099210 | Msa0853520 | 0.815013 | 1.149035e-51 | -8.615850e-47 |
Msa0099210 | Msa0858980 | 0.824136 | 9.504274e-54 | -8.615850e-47 |
Msa0099210 | Msa0864070 | 0.821480 | 3.947675e-53 | -8.615850e-47 |
Msa0099210 | Msa0897330 | 0.805743 | 1.152216e-49 | -8.615850e-47 |
Msa0099210 | Msa0899430 | 0.819507 | 1.120058e-52 | -8.615850e-47 |
Msa0099210 | Msa0899450 | 0.816623 | 5.027821e-52 | -8.615850e-47 |
Msa0099210 | Msa0914270 | 0.810094 | 1.367714e-50 | -8.615850e-47 |
Msa0099210 | Msa0927310 | 0.814830 | 1.261596e-51 | -8.615850e-47 |
Msa0099210 | Msa0927380 | 0.827567 | 1.456527e-54 | -8.615850e-47 |
Msa0099210 | Msa0935640 | 0.809098 | 2.237767e-50 | -8.615850e-47 |
Msa0099210 | Msa0953120 | 0.807809 | 4.215634e-50 | -8.615850e-47 |
Msa0099210 | Msa0958550 | 0.804727 | 1.880411e-49 | -8.615850e-47 |
Msa0099210 | Msa0960390 | 0.804092 | 2.550401e-49 | -8.615850e-47 |
Msa0099210 | Msa0964900 | 0.806300 | 8.794837e-50 | -8.615850e-47 |
Msa0099210 | Msa0966750 | 0.814577 | 1.435159e-51 | -8.615850e-47 |
Msa0099210 | Msa0969520 | 0.813388 | 2.624949e-51 | -8.615850e-47 |
Msa0099210 | Msa0974080 | 0.819255 | 1.278397e-52 | -8.615850e-47 |
Msa0099210 | Msa0999290 | 0.811558 | 6.594164e-51 | -8.615850e-47 |
Msa0099210 | Msa1000890 | 0.807163 | 5.781880e-50 | -8.615850e-47 |
Msa0099210 | Msa1000900 | 0.822032 | 2.943234e-53 | -8.615850e-47 |
Msa0099210 | Msa1016320 | 0.809230 | 2.097343e-50 | -8.615850e-47 |
Msa0099210 | Msa1019000 | 0.800407 | 1.462475e-48 | -8.615850e-47 |
Msa0099210 | Msa1023050 | 0.801942 | 7.096681e-49 | -8.615850e-47 |
Msa0099210 | Msa1029240 | 0.804703 | 1.902387e-49 | -8.615850e-47 |
Msa0099210 | Msa1037780 | 0.803953 | 2.725615e-49 | -8.615850e-47 |
Msa0099210 | Msa1039710 | -0.806857 | 6.709140e-50 | -8.615850e-47 |
Msa0099210 | Msa1054990 | 0.812241 | 4.680891e-51 | -8.615850e-47 |
Msa0099210 | Msa1075650 | 0.815873 | 7.394102e-52 | -8.615850e-47 |
Msa0099210 | Msa1100050 | 0.813352 | 2.673388e-51 | -8.615850e-47 |
Msa0099210 | Msa1120740 | 0.824185 | 9.257699e-54 | -8.615850e-47 |
Msa0099210 | Msa1121480 | 0.839466 | 1.557961e-57 | -8.615850e-47 |
Msa0099210 | Msa1121490 | 0.854622 | 1.089191e-61 | -8.615850e-47 |
Msa0099210 | Msa1137570 | 0.806830 | 6.799755e-50 | -8.615850e-47 |
Msa0099210 | Msa1144450 | 0.807419 | 5.101743e-50 | -8.615850e-47 |
Msa0099210 | Msa1147740 | 0.808562 | 2.913602e-50 | -8.615850e-47 |
Msa0099210 | Msa1177560 | 0.811689 | 6.174472e-51 | -8.615850e-47 |
Msa0099210 | Msa1184420 | 0.810596 | 1.065724e-50 | -8.615850e-47 |
Msa0099210 | Msa1195190 | 0.806536 | 7.843441e-50 | -8.615850e-47 |
Msa0099210 | Msa1198770 | 0.810495 | 1.120344e-50 | -8.615850e-47 |
Msa0099210 | Msa1248310 | 0.811518 | 6.724846e-51 | -8.615850e-47 |
Msa0099210 | Msa1248370 | 0.806870 | 6.667609e-50 | -8.615850e-47 |
Msa0099210 | Msa1252260 | 0.816202 | 6.245370e-52 | -8.615850e-47 |
Msa0099210 | Msa1272680 | 0.844046 | 9.633593e-59 | -8.615850e-47 |
Msa0099210 | Msa1277660 | 0.813769 | 2.164212e-51 | -8.615850e-47 |
Msa0099210 | Msa1284680 | 0.812648 | 3.815065e-51 | -8.615850e-47 |
Msa0099210 | Msa1285550 | 0.803738 | 3.021335e-49 | -8.615850e-47 |
Msa0099210 | Msa1286800 | 0.822168 | 2.735972e-53 | -8.615850e-47 |
Msa0099210 | Msa1287190 | 0.805135 | 1.544606e-49 | -8.615850e-47 |
Msa0099210 | Msa1287220 | 0.826952 | 2.045243e-54 | -8.615850e-47 |
Msa0099210 | Msa1304890 | -0.822057 | 2.904326e-53 | -8.615850e-47 |
Msa0099210 | Msa1353470 | 0.813670 | 2.276062e-51 | -8.615850e-47 |
Msa0099210 | Msa1384280 | 0.801282 | 9.691525e-49 | -8.615850e-47 |
Msa0099210 | Msa1385090 | 0.817002 | 4.132725e-52 | -8.615850e-47 |
Msa0099210 | Msa1388930 | 0.804303 | 2.304751e-49 | -8.615850e-47 |
Msa0099210 | Msa1394380 | 0.802013 | 6.863332e-49 | -8.615850e-47 |
Msa0099210 | Msa1410680 | 0.855605 | 5.639479e-62 | -8.615850e-47 |
Msa0099210 | Msa1411050 | 0.802768 | 4.796175e-49 | -8.615850e-47 |
Msa0099210 | Msa1420820 | 0.812874 | 3.403270e-51 | -8.615850e-47 |
Msa0099210 | Msa1427230 | 0.805795 | 1.123392e-49 | -8.615850e-47 |
Msa0099210 | Msa1454570 | 0.803343 | 3.647907e-49 | -8.615850e-47 |
Msa0099210 | Msa1460830 | 0.801070 | 1.071051e-48 | -8.615850e-47 |
Msa0099210 | Msa1466540 | 0.812604 | 3.900199e-51 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0099210 | MtrunA17_Chr1g0151181 | 97.115 | 104 | 3 | 0 | 1 | 104 | 16 | 119 | 2.47e-70 | 205 |
Msa0099210 | MtrunA17_Chr4g0071001 | 58.407 | 113 | 29 | 7 | 2 | 101 | 14 | 121 | 4.11e-27 | 96.3 |
Msa0099210 | MtrunA17_Chr3g0135901 | 70.297 | 101 | 23 | 4 | 1 | 101 | 15 | 108 | 4.88e-27 | 95.9 |
Msa0099210 | MtrunA17_Chr2g0329951 | 47.115 | 104 | 46 | 4 | 2 | 104 | 13 | 108 | 1.76e-22 | 84.3 |
Msa0099210 | MtrunA17_Chr8g0342841 | 48.315 | 89 | 36 | 4 | 16 | 104 | 26 | 104 | 1.92e-16 | 68.6 |
Msa0099210 | MtrunA17_Chr8g0342831 | 48.315 | 89 | 36 | 4 | 16 | 104 | 26 | 104 | 1.92e-16 | 68.6 |
Msa0099210 | MtrunA17_Chr7g0269811 | 34.694 | 98 | 55 | 3 | 4 | 101 | 1 | 89 | 1.25e-11 | 55.8 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0099210 | AT5G11970.1 | 55.340 | 103 | 34 | 5 | 2 | 104 | 15 | 105 | 6.07e-23 | 85.5 |
Msa0099210 | AT3G13910.1 | 51.852 | 81 | 35 | 3 | 15 | 94 | 20 | 97 | 2.41e-16 | 68.6 |
Msa0099210 | AT3G13910.2 | 51.852 | 81 | 35 | 3 | 15 | 94 | 20 | 97 | 4.31e-16 | 68.6 |
Msa0099210 | AT2G19460.1 | 55.000 | 80 | 28 | 3 | 16 | 95 | 39 | 110 | 1.82e-14 | 64.3 |
Msa0099210 | AT2G19460.2 | 55.000 | 80 | 28 | 3 | 16 | 95 | 91 | 162 | 3.44e-14 | 64.7 |
Msa0099210 | AT1G72720.1 | 43.158 | 95 | 48 | 2 | 12 | 104 | 37 | 127 | 1.27e-13 | 62.4 |
Msa0099210 | AT2G47480.1 | 45.161 | 62 | 32 | 1 | 42 | 101 | 47 | 108 | 1.14e-12 | 59.7 |
Msa0099210 | AT3G05725.1 | 43.478 | 69 | 36 | 2 | 35 | 103 | 59 | 124 | 1.17e-11 | 57.4 |
Msa0099210 | AT3G62640.1 | 51.163 | 43 | 21 | 0 | 60 | 102 | 68 | 110 | 1.28e-11 | 57.0 |
Find 29 sgRNAs with CRISPR-Local
Find 27 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AACTTCAAGTCCTTATTATT+AGG | 0.268756 | 1_3:+5285067 | None:intergenic |
GAAAAGTGAAAGGTTCATTT+AGG | 0.301962 | 1_3:-5284925 | Msa0099210:CDS |
TCAAAGGGGTCCTAATAATA+AGG | 0.325607 | 1_3:-5285077 | Msa0099210:CDS |
TAAGACCTAATATCATAATT+AGG | 0.344095 | 1_3:+5285124 | None:intergenic |
ATTTCCAAGTCTTGGAGCTT+TGG | 0.345743 | 1_3:-5285010 | Msa0099210:CDS |
CTAAGCCTAATTATGATATT+AGG | 0.367646 | 1_3:-5285129 | Msa0099210:CDS |
CTGAATTTCAAAGAAAGAAA+AGG | 0.382930 | 1_3:-5284979 | Msa0099210:CDS |
GGTCTTCAATTTCCAAGTCT+TGG | 0.385601 | 1_3:-5285018 | Msa0099210:CDS |
TTCCTATGCACAAACTCAAA+GGG | 0.443805 | 1_3:-5285092 | Msa0099210:CDS |
AGTGGCTAAAGAATAGGTAT+TGG | 0.458659 | 1_3:-5284892 | Msa0099210:CDS |
TGAATTTCAAAGAAAGAAAA+GGG | 0.462597 | 1_3:-5284978 | Msa0099210:CDS |
GCTTTAAGTGGCTAAAGAAT+AGG | 0.471892 | 1_3:-5284898 | Msa0099210:CDS |
ATCACCAAAGCTCCAAGACT+TGG | 0.492773 | 1_3:+5285006 | None:intergenic |
AGGACTTGAAGTTGAAGAAA+GGG | 0.493735 | 1_3:-5285057 | Msa0099210:CDS |
CATTTAGGAAAAGCTTTAAG+TGG | 0.499586 | 1_3:-5284910 | Msa0099210:CDS |
AAGGACTTGAAGTTGAAGAA+AGG | 0.504271 | 1_3:-5285058 | Msa0099210:CDS |
TACAAAATGTATTCTGTGGA+AGG | 0.507359 | 1_3:-5284947 | Msa0099210:CDS |
TTTCCTATGCACAAACTCAA+AGG | 0.521927 | 1_3:-5285093 | Msa0099210:CDS |
ATGCAGATGGAGGGCTACAA+TGG | 0.544528 | 1_3:-5285157 | Msa0099210:CDS |
CCCTAATCAAATGATGCAGA+TGG | 0.581218 | 1_3:-5285170 | None:intergenic |
GGCATGTGGTTTATAACTTG+TGG | 0.581423 | 1_3:-5284871 | Msa0099210:CDS |
AAGGGAAAAGCATTTCATCA+AGG | 0.598189 | 1_3:-5285039 | Msa0099210:CDS |
TAATCAAATGATGCAGATGG+AGG | 0.606249 | 1_3:-5285167 | None:intergenic |
TCTGTGGAAGGAAAAGTGAA+AGG | 0.617851 | 1_3:-5284935 | Msa0099210:CDS |
AAAGAATAGGTATTGGCATG+TGG | 0.618847 | 1_3:-5284885 | Msa0099210:CDS |
AATCAAATGATGCAGATGGA+GGG | 0.622764 | 1_3:-5285166 | None:intergenic |
TAGCTACAAAATGTATTCTG+TGG | 0.631804 | 1_3:-5284951 | Msa0099210:CDS |
ACCCCTTTGAGTTTGTGCAT+AGG | 0.638318 | 1_3:+5285090 | None:intergenic |
TCCTATGCACAAACTCAAAG+GGG | 0.640633 | 1_3:-5285091 | Msa0099210:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TAAGACCTAATATCATAATT+AGG | + | chr1_3:5284907-5284926 | None:intergenic | 20.0% |
!! | TGAATTTCAAAGAAAGAAAA+GGG | - | chr1_3:5285050-5285069 | Msa0099210:CDS | 20.0% |
! | CTAAGCCTAATTATGATATT+AGG | - | chr1_3:5284899-5284918 | Msa0099210:CDS | 25.0% |
! | AACTTCAAGTCCTTATTATT+AGG | + | chr1_3:5284964-5284983 | None:intergenic | 25.0% |
!!! | CTTTTCTTTCTTTGAAATTC+AGG | + | chr1_3:5285051-5285070 | None:intergenic | 25.0% |
! | CTGAATTTCAAAGAAAGAAA+AGG | - | chr1_3:5285049-5285068 | Msa0099210:CDS | 25.0% |
TAGCTACAAAATGTATTCTG+TGG | - | chr1_3:5285077-5285096 | Msa0099210:CDS | 30.0% | |
TACAAAATGTATTCTGTGGA+AGG | - | chr1_3:5285081-5285100 | Msa0099210:CDS | 30.0% | |
GAAAAGTGAAAGGTTCATTT+AGG | - | chr1_3:5285103-5285122 | Msa0099210:CDS | 30.0% | |
!! | CATTTAGGAAAAGCTTTAAG+TGG | - | chr1_3:5285118-5285137 | Msa0099210:CDS | 30.0% |
TTTCCTATGCACAAACTCAA+AGG | - | chr1_3:5284935-5284954 | Msa0099210:CDS | 35.0% | |
TTCCTATGCACAAACTCAAA+GGG | - | chr1_3:5284936-5284955 | Msa0099210:CDS | 35.0% | |
TCAAAGGGGTCCTAATAATA+AGG | - | chr1_3:5284951-5284970 | Msa0099210:CDS | 35.0% | |
AAGGACTTGAAGTTGAAGAA+AGG | - | chr1_3:5284970-5284989 | Msa0099210:CDS | 35.0% | |
AGGACTTGAAGTTGAAGAAA+GGG | - | chr1_3:5284971-5284990 | Msa0099210:CDS | 35.0% | |
!! | AAGGGAAAAGCATTTCATCA+AGG | - | chr1_3:5284989-5285008 | Msa0099210:CDS | 35.0% |
! | GCTTTAAGTGGCTAAAGAAT+AGG | - | chr1_3:5285130-5285149 | Msa0099210:CDS | 35.0% |
AGTGGCTAAAGAATAGGTAT+TGG | - | chr1_3:5285136-5285155 | Msa0099210:CDS | 35.0% | |
!! | AAAGAATAGGTATTGGCATG+TGG | - | chr1_3:5285143-5285162 | Msa0099210:CDS | 35.0% |
TCCTATGCACAAACTCAAAG+GGG | - | chr1_3:5284937-5284956 | Msa0099210:CDS | 40.0% | |
GGTCTTCAATTTCCAAGTCT+TGG | - | chr1_3:5285010-5285029 | Msa0099210:CDS | 40.0% | |
ATTTCCAAGTCTTGGAGCTT+TGG | - | chr1_3:5285018-5285037 | Msa0099210:CDS | 40.0% | |
TCTGTGGAAGGAAAAGTGAA+AGG | - | chr1_3:5285093-5285112 | Msa0099210:CDS | 40.0% | |
GGCATGTGGTTTATAACTTG+TGG | - | chr1_3:5285157-5285176 | Msa0099210:CDS | 40.0% | |
! | ACCCCTTTGAGTTTGTGCAT+AGG | + | chr1_3:5284941-5284960 | None:intergenic | 45.0% |
ATCACCAAAGCTCCAAGACT+TGG | + | chr1_3:5285025-5285044 | None:intergenic | 45.0% | |
ATGCAGATGGAGGGCTACAA+TGG | - | chr1_3:5284871-5284890 | Msa0099210:CDS | 50.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1_3 | gene | 5284868 | 5285182 | 5284868 | ID=Msa0099210;Name=Msa0099210 |
chr1_3 | mRNA | 5284868 | 5285182 | 5284868 | ID=Msa0099210-mRNA-1;Parent=Msa0099210;Name=Msa0099210-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|-1|0|1|-1|1|1|0|104 |
chr1_3 | exon | 5284868 | 5285182 | 5284868 | ID=Msa0099210-mRNA-1:exon:1909;Parent=Msa0099210-mRNA-1 |
chr1_3 | CDS | 5284868 | 5285182 | 5284868 | ID=Msa0099210-mRNA-1:cds;Parent=Msa0099210-mRNA-1 |
Gene Sequence |
Protein sequence |