AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0418790


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0418790 MtrunA17_Chr3g0116461 98.754 321 4 0 1 321 3 323 0.0 652
Msa0418790 MtrunA17_Chr8g0381911 41.202 233 119 5 80 295 65 296 1.16e-53 178
Msa0418790 MtrunA17_Chr2g0291931 34.868 152 90 5 80 225 74 222 2.32e-20 90.5
Msa0418790 MtrunA17_Chr7g0271811 29.670 273 160 9 19 280 10 261 1.36e-12 68.6
Msa0418790 MtrunA17_Chr4g0048231 32.609 138 92 1 180 317 93 229 3.09e-12 66.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0418790 AT3G48420.1 81.588 277 47 2 48 321 44 319 4.17e-160 450
Msa0418790 AT4G39970.1 38.039 255 141 6 56 295 42 294 1.44e-49 168
Msa0418790 AT5G45170.2 30.380 237 148 9 8 231 1 233 3.38e-18 84.3
Msa0418790 AT5G45170.1 30.380 237 148 9 8 231 1 233 3.72e-18 84.7
Msa0418790 AT1G56500.2 29.675 246 129 8 53 280 43 262 5.18e-13 70.1
Msa0418790 AT1G56500.1 30.932 236 139 8 53 280 43 262 6.42e-13 70.1
Msa0418790 AT4G21470.1 29.661 236 140 9 77 308 10 223 1.71e-11 65.1

Find 83 sgRNAs with CRISPR-Local

Find 172 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATCCTTCTTGTTGTGTTTA+AGG 0.108233 3_2:+66634107 None:intergenic
TACGGTGAGTTGCTCAAAAT+TGG 0.227552 3_2:-66633454 Msa0418790:CDS
TCCTTTCTTGTTCACCTGTC+GGG 0.284815 3_2:+66633298 None:intergenic
CCACGTCTCCTGCAAATATC+TGG 0.290444 3_2:+66632452 None:intergenic
TGCAATAGTATCATGTTTAC+TGG 0.316202 3_2:-66632497 Msa0418790:CDS
TAAAAGATCAATGTTTATAT+CGG 0.325530 3_2:-66631453 Msa0418790:three_prime_UTR
TCCTGAGGAGAGATTTGATT+TGG 0.337964 3_2:-66631615 Msa0418790:CDS
GCAACTCAACCTACGCCTTC+TGG 0.363138 3_2:+66634018 None:intergenic
AACATATAGGCTTGTCGATC+AGG 0.376211 3_2:-66632771 Msa0418790:intron
TTAACATCAAGTCTTTAGAT+TGG 0.398693 3_2:-66631303 Msa0418790:three_prime_UTR
AAGTGTGTGTGATGATGATT+TGG 0.399882 3_2:-66634247 Msa0418790:five_prime_UTR
CAACAATGAAACAGAGGAAA+TGG 0.402015 3_2:+66634171 None:intergenic
GCGAAAGACAGAACTATTCA+TGG 0.402161 3_2:-66633250 Msa0418790:CDS
GATGCTGTATTTGACTTCAT+TGG 0.403312 3_2:-66631644 Msa0418790:CDS
TTCCTTTCTTGTTCACCTGT+CGG 0.403845 3_2:+66633297 None:intergenic
CAATATGTCAGCTAGCAAAC+TGG 0.412540 3_2:-66631566 Msa0418790:exon
TAACATCAAGTCTTTAGATT+GGG 0.416264 3_2:-66631302 Msa0418790:three_prime_UTR
TATGCATACCGCCTTCTCAT+TGG 0.423723 3_2:+66632709 None:intergenic
CTCTCGGTGTTGAACCTTCA+AGG 0.431443 3_2:-66632237 Msa0418790:intron
GAGGAAAATCTTACTGGATC+AGG 0.443590 3_2:+66632415 None:intergenic
GTGGTCGAGGACAGTGCAAT+AGG 0.458037 3_2:-66631912 Msa0418790:CDS
CTAGCAGCTGCTAAAGCAGC+TGG 0.460176 3_2:-66631888 Msa0418790:CDS
GAGTTGCTCAGCCTCGGCTT+CGG 0.462076 3_2:-66634002 Msa0418790:CDS
AAGAGCTTTGACAGTGAAAG+AGG 0.462364 3_2:+66634060 None:intergenic
AGAAAGAACTAGGCGTTACA+TGG 0.472435 3_2:-66633489 Msa0418790:CDS
TGAGTTGTGCAGAAAGAACT+AGG 0.472615 3_2:-66633499 Msa0418790:intron
TCACCTGTCGGGGCATTCGC+AGG 0.476166 3_2:+66633309 None:intergenic
GCTTGCAGCTAGTCTATAGA+TGG 0.480656 3_2:+66632261 None:intergenic
TAGGTTGAGTTGCTCAGCCT+CGG 0.485144 3_2:-66634008 Msa0418790:CDS
CCCCGACAGGTGAACAAGAA+AGG 0.485593 3_2:-66633299 Msa0418790:CDS
TACTTATCTGCTTCCTATGT+GGG 0.486071 3_2:+66634277 None:intergenic
GCCAAATCAAATCTCTCCTC+AGG 0.492266 3_2:+66631614 None:intergenic
CCTTTCTTGTTCACCTGTCG+GGG 0.500466 3_2:+66633299 None:intergenic
ACTATTATGAGATACCTTGA+AGG 0.500652 3_2:+66632223 None:intergenic
ACATGGGACGTGGAATTGTA+CGG 0.502947 3_2:-66633472 Msa0418790:CDS
CTACTTATCTGCTTCCTATG+TGG 0.505860 3_2:+66634276 None:intergenic
GTAACCAACTTTGCAACACC+TGG 0.507072 3_2:+66633195 None:intergenic
CCTTCTTGTTGTGTTTAAGG+AGG 0.516074 3_2:+66634110 None:intergenic
TTACAGATGTGTCGTGGTCG+AGG 0.524433 3_2:-66631925 Msa0418790:intron
TGGCCTGCGAATGCCCCGAC+AGG 0.524846 3_2:-66633312 Msa0418790:CDS
GAAAGCTAAGGCAACGGCCA+TGG 0.530656 3_2:-66634215 Msa0418790:exon
GTCGATCAGGCTTTAACTCA+AGG 0.530696 3_2:-66632758 Msa0418790:CDS
TGACATATTGCTTCTCAAGA+AGG 0.536995 3_2:+66631579 None:intergenic
AGACTAGCTGCAAGCACTCT+CGG 0.540283 3_2:-66632253 Msa0418790:CDS
CACAATTAACGGTCCCACAT+AGG 0.542316 3_2:-66634290 None:intergenic
AAACTGTTGCCTCTTCGCCC+AGG 0.546839 3_2:-66633213 Msa0418790:CDS
ACGGCGTACTTTAACAAGAC+AGG 0.551081 3_2:-66633336 Msa0418790:CDS
AAAGACTTGATGTTAAAACT+TGG 0.553281 3_2:+66631310 None:intergenic
TTTATATCGGTTGTGTAGAG+AGG 0.562571 3_2:-66631440 Msa0418790:three_prime_UTR
TTGCAGCACTTCCAATGAGA+AGG 0.567771 3_2:-66632720 Msa0418790:CDS
GGTGAGTTGCTCAAAATTGG+AGG 0.574539 3_2:-66633451 Msa0418790:CDS
TGATGATGATTTGGTGTGCA+AGG 0.576575 3_2:-66634238 Msa0418790:five_prime_UTR
AAGAAGAGCTGAGGGAAGCG+TGG 0.578519 3_2:+66633973 None:intergenic
AGTGTATAGTAACAAAGAGC+GGG 0.580787 3_2:-66631860 Msa0418790:intron
CCAGATATTTGCAGGAGACG+TGG 0.583159 3_2:-66632452 Msa0418790:CDS
TAGCAGCTGCTAAAGCAGCT+GGG 0.585713 3_2:-66631887 Msa0418790:CDS
CGTGGAAGATGCCGAAGCCG+AGG 0.587987 3_2:+66633991 None:intergenic
GAGTTGCTCAAAATTGGAGG+TGG 0.594215 3_2:-66633448 Msa0418790:CDS
GCAATAGTATCATGTTTACT+GGG 0.601679 3_2:-66632496 Msa0418790:CDS
TTTGCAACACCTGGGCGAAG+AGG 0.605369 3_2:+66633204 None:intergenic
GGTAAGCCTGAAAACAAATG+AGG 0.611423 3_2:+66631492 None:intergenic
AAATTGGAGGTGGAAAAGAA+AGG 0.615844 3_2:-66633438 Msa0418790:intron
TTTCAATGATACTTTCCAAG+AGG 0.616411 3_2:-66633897 Msa0418790:intron
TGTTATTTACAGATGTGTCG+TGG 0.617481 3_2:-66631931 Msa0418790:intron
CCTCCTTAAACACAACAAGA+AGG 0.618479 3_2:-66634110 Msa0418790:CDS
GCTTTGACAGTGAAAGAGGA+TGG 0.619633 3_2:+66634064 None:intergenic
CTTCATTGGTGATCCTCCTG+AGG 0.623430 3_2:-66631630 Msa0418790:CDS
AAATCAAATCTCTCCTCAGG+AGG 0.626804 3_2:+66631617 None:intergenic
AAGTGTATAGTAACAAAGAG+CGG 0.628437 3_2:-66631861 Msa0418790:CDS
CGTACTTTAACAAGACAGGT+TGG 0.629835 3_2:-66633332 Msa0418790:CDS
GATGCTATTTGCTGATGCCA+TGG 0.634041 3_2:+66634198 None:intergenic
ACTAGGCGTTACATGGGACG+TGG 0.635683 3_2:-66633482 Msa0418790:CDS
TGGTGTGCAAGGGAAAGCTA+AGG 0.645585 3_2:-66634227 Msa0418790:five_prime_UTR
TAACCAACTTTGCAACACCT+GGG 0.652911 3_2:+66633196 None:intergenic
GAAAGAACTAGGCGTTACAT+GGG 0.654542 3_2:-66633488 Msa0418790:CDS
TATCATTGAAAGAAATGCGG+TGG 0.657910 3_2:+66633909 None:intergenic
CAGCACTTCCAATGAGAAGG+CGG 0.658354 3_2:-66632717 Msa0418790:intron
TATCAACTTCAACAACCAGA+AGG 0.668672 3_2:-66634033 Msa0418790:CDS
TCGATTCAACAATGAAACAG+AGG 0.668673 3_2:+66634165 None:intergenic
GATGATGATTTGGTGTGCAA+GGG 0.668958 3_2:-66634237 Msa0418790:five_prime_UTR
GCAAGGGAAAGCTAAGGCAA+CGG 0.674934 3_2:-66634221 Msa0418790:five_prime_UTR
CTTCAACAACCAGAAGGCGT+AGG 0.675480 3_2:-66634027 Msa0418790:CDS
AAGTATCATTGAAAGAAATG+CGG 0.694645 3_2:+66633906 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGTAAATATACTTCTTATTA+TGG - chr3_2:66631731-66631750 Msa0418790:intron 15.0%
!!! CTAATTTTCATTATTGAATA+TGG - chr3_2:66632510-66632529 Msa0418790:intron 15.0%
!!! GTATATTTCTATTTACTAAA+TGG - chr3_2:66633734-66633753 Msa0418790:intron 15.0%
!!! TCTATGTAATTTTTTTTCAT+AGG - chr3_2:66633765-66633784 Msa0418790:intron 15.0%
!!! TTTTAATCATTGACTTAAAA+GGG + chr3_2:66634104-66634123 None:intergenic 15.0%
!! TAAAAGATCAATGTTTATAT+CGG - chr3_2:66634119-66634138 Msa0418790:CDS 15.0%
!!! TTTTTATTTATAAGAGATTG+AGG + chr3_2:66634234-66634253 None:intergenic 15.0%
!! AAACTCATAAAAAATGAGTT+TGG + chr3_2:66632428-66632447 None:intergenic 20.0%
!!! AAACAATATTAGCCTATTAA+GGG + chr3_2:66632651-66632670 None:intergenic 20.0%
!!! TAAACAATATTAGCCTATTA+AGG + chr3_2:66632652-66632671 None:intergenic 20.0%
!! TAGTTGGAAAAATTCATTTA+AGG + chr3_2:66632905-66632924 None:intergenic 20.0%
!! TTTATTCATAACTGCAATAT+CGG - chr3_2:66632994-66633013 Msa0418790:intron 20.0%
!! TTAACTGTAGTATGTAAAAT+GGG + chr3_2:66633237-66633256 None:intergenic 20.0%
!! TTTAACTGTAGTATGTAAAA+TGG + chr3_2:66633238-66633257 None:intergenic 20.0%
!!! TACAACATTTGATTTTATGA+TGG + chr3_2:66633491-66633510 None:intergenic 20.0%
!!! AATAACTTGCTCTAAAATTT+TGG + chr3_2:66633559-66633578 None:intergenic 20.0%
!!! TTATTTGTTTTTGAACTGTA+TGG - chr3_2:66633591-66633610 Msa0418790:intron 20.0%
!!! CTTTTAATCATTGACTTAAA+AGG + chr3_2:66634105-66634124 None:intergenic 20.0%
!!! TGACATTTTTAATCATCAAA+GGG + chr3_2:66634208-66634227 None:intergenic 20.0%
!!! CTAATAAGTGTTGTTGTTTT+TGG + chr3_2:66631442-66631461 None:intergenic 25.0%
! AAGTATCATTGAAAGAAATG+CGG + chr3_2:66631669-66631688 None:intergenic 25.0%
! AAGAAAGATTAAAAAGCAGA+AGG + chr3_2:66631703-66631722 None:intergenic 25.0%
! AACATTAATAATTGTTTCCG+AGG + chr3_2:66631986-66632005 None:intergenic 25.0%
!!! ATAATTGTTGCGTTTTTTGT+AGG - chr3_2:66632210-66632229 Msa0418790:intron 25.0%
! TAAATTACCTACTAAGTAGT+TGG - chr3_2:66632605-66632624 Msa0418790:intron 25.0%
! TTATAAACCAACTACTTAGT+AGG + chr3_2:66632615-66632634 None:intergenic 25.0%
! TTTCTGTCTATCAAACATAT+AGG - chr3_2:66632788-66632807 Msa0418790:intron 25.0%
! TTTCCAACTATAGAGAAAAA+TGG - chr3_2:66632915-66632934 Msa0418790:intron 25.0%
! ATTTATTTGTATTCCATCTC+AGG - chr3_2:66633023-66633042 Msa0418790:intron 25.0%
! AAAAAATTAGCATTGCAATG+AGG + chr3_2:66633179-66633198 None:intergenic 25.0%
!!! TGCTAATTTTTTAGACTTTC+AGG - chr3_2:66633187-66633206 Msa0418790:intron 25.0%
! TACATACTACAGTTAAACAA+TGG - chr3_2:66633241-66633260 Msa0418790:CDS 25.0%
! CTTTAAATTACACAAGACAT+TGG - chr3_2:66633426-66633445 Msa0418790:intron 25.0%
!!! GATTTTATGATGGATACATT+TGG + chr3_2:66633481-66633500 None:intergenic 25.0%
!!! TTAGTGGTTATGTTAGTTTT+TGG - chr3_2:66633804-66633823 Msa0418790:intron 25.0%
!!! TAGTGGTTATGTTAGTTTTT+GGG - chr3_2:66633805-66633824 Msa0418790:intron 25.0%
!! CTGACATTTTTAATCATCAA+AGG + chr3_2:66634209-66634228 None:intergenic 25.0%
! AAAGACTTGATGTTAAAACT+TGG + chr3_2:66634265-66634284 None:intergenic 25.0%
! TTAACATCAAGTCTTTAGAT+TGG - chr3_2:66634269-66634288 Msa0418790:five_prime_UTR 25.0%
! TAACATCAAGTCTTTAGATT+GGG - chr3_2:66634270-66634289 Msa0418790:five_prime_UTR 25.0%
TTTCAATGATACTTTCCAAG+AGG - chr3_2:66631675-66631694 Msa0418790:CDS 30.0%
CACTAGTTAGTTGTTCTAAT+CGG + chr3_2:66631876-66631895 None:intergenic 30.0%
TACATCTAACGTTAGTAATC+AGG - chr3_2:66631907-66631926 Msa0418790:CDS 30.0%
CAACTCAACAACAAATACAT+GGG + chr3_2:66632060-66632079 None:intergenic 30.0%
ACAACTCAACAACAAATACA+TGG + chr3_2:66632061-66632080 None:intergenic 30.0%
TGAAAACTCAAGCTATTAAG+TGG + chr3_2:66632487-66632506 None:intergenic 30.0%
! AGTAGTTGGTTTATAACATG+TGG - chr3_2:66632619-66632638 Msa0418790:intron 30.0%
ATGTGGAAATATCCCTTAAT+AGG - chr3_2:66632636-66632655 Msa0418790:intron 30.0%
TCAACAAACAGGTAACTAAT+AGG + chr3_2:66632961-66632980 None:intergenic 30.0%
TGCAATAGTATCATGTTTAC+TGG - chr3_2:66633075-66633094 Msa0418790:intron 30.0%
GCAATAGTATCATGTTTACT+GGG - chr3_2:66633076-66633095 Msa0418790:intron 30.0%
AATTAGCCACATGGTAAAAA+AGG + chr3_2:66633269-66633288 None:intergenic 30.0%
ACTATTATGAGATACCTTGA+AGG + chr3_2:66633352-66633371 None:intergenic 30.0%
CAAGACATTGGAAAAGTTAA+TGG - chr3_2:66633438-66633457 Msa0418790:intron 30.0%
AAGTGTATAGTAACAAAGAG+CGG - chr3_2:66633711-66633730 Msa0418790:intron 30.0%
!!! TTAGTTTTTGGGATCGAATT+CGG - chr3_2:66633816-66633835 Msa0418790:intron 30.0%
CAAGAATGAAATCACATTGA+AGG + chr3_2:66633857-66633876 None:intergenic 30.0%
!!! AGATTTGATTTGGCATTTTG+TGG - chr3_2:66633967-66633986 Msa0418790:CDS 30.0%
!! TCAATTCCTCATTTGTTTTC+AGG - chr3_2:66634074-66634093 Msa0418790:CDS 30.0%
TACTTATCTGCTTCCTATGT+GGG + chr3_2:66631298-66631317 None:intergenic 35.0%
! AAGTGTGTGTGATGATGATT+TGG - chr3_2:66631325-66631344 Msa0418790:three_prime_UTR 35.0%
CAACAATGAAACAGAGGAAA+TGG + chr3_2:66631404-66631423 None:intergenic 35.0%
TCGATTCAACAATGAAACAG+AGG + chr3_2:66631410-66631429 None:intergenic 35.0%
! GATCCTTCTTGTTGTGTTTA+AGG + chr3_2:66631468-66631487 None:intergenic 35.0%
TATCAACTTCAACAACCAGA+AGG - chr3_2:66631539-66631558 Msa0418790:intron 35.0%
!!! CATCTTTTTCAGTGTCAACA+AGG + chr3_2:66631642-66631661 None:intergenic 35.0%
CTTGTTGACACTGAAAAAGA+TGG - chr3_2:66631640-66631659 Msa0418790:CDS 35.0%
TATCATTGAAAGAAATGCGG+TGG + chr3_2:66631666-66631685 None:intergenic 35.0%
! GAATCGTTGATTACATAGAG+TGG - chr3_2:66631832-66631851 Msa0418790:intron 35.0%
!! GATGAAGACATTCTAGTTCT+AGG + chr3_2:66631940-66631959 None:intergenic 35.0%
TAATAATTGTTTCCGAGGCA+TGG + chr3_2:66631981-66632000 None:intergenic 35.0%
AAATTGGAGGTGGAAAAGAA+AGG - chr3_2:66632134-66632153 Msa0418790:intron 35.0%
!!! TTGCGTTTTTTGTAGGATGA+CGG - chr3_2:66632217-66632236 Msa0418790:intron 35.0%
AATATGGTTTCGAAACAGCT+AGG - chr3_2:66632526-66632545 Msa0418790:intron 35.0%
ATATGGTTTCGAAACAGCTA+GGG - chr3_2:66632527-66632546 Msa0418790:intron 35.0%
!!! GAGCCATTTTTCTCTATAGT+TGG + chr3_2:66632921-66632940 None:intergenic 35.0%
CTGAAATCAACTCATGACTT+AGG + chr3_2:66633050-66633069 None:intergenic 35.0%
!! CTAAGTCATGAGTTGATTTC+AGG - chr3_2:66633048-66633067 Msa0418790:intron 35.0%
GCAAAAATCCAGATATTTGC+AGG - chr3_2:66633112-66633131 Msa0418790:intron 35.0%
!!! TTACTGGATCAGGCTTTTTT+CGG + chr3_2:66633150-66633169 None:intergenic 35.0%
TGCAATGAGGAAAATCTTAC+TGG + chr3_2:66633166-66633185 None:intergenic 35.0%
GAATAACACAATTAGCCACA+TGG + chr3_2:66633278-66633297 None:intergenic 35.0%
! TGTGTTATTCTCTTTGTGAC+AGG - chr3_2:66633288-66633307 Msa0418790:CDS 35.0%
TCATATGCCTAACTAGTACA+TGG - chr3_2:66633371-66633390 Msa0418790:intron 35.0%
TAGTACTCCATGTACTAGTT+AGG + chr3_2:66633381-66633400 None:intergenic 35.0%
! TGTTATTTACAGATGTGTCG+TGG - chr3_2:66633641-66633660 Msa0418790:intron 35.0%
AGTGTATAGTAACAAAGAGC+GGG - chr3_2:66633712-66633731 Msa0418790:intron 35.0%
CAGAGATGATAGTAAGTTAG+TGG - chr3_2:66633788-66633807 Msa0418790:intron 35.0%
!!! TAGTTTTTGGGATCGAATTC+GGG - chr3_2:66633817-66633836 Msa0418790:intron 35.0%
TGATCTCAAATGTATCATGC+AGG - chr3_2:66633875-66633894 Msa0418790:intron 35.0%
! GATGCTGTATTTGACTTCAT+TGG - chr3_2:66633928-66633947 Msa0418790:CDS 35.0%
TGACATATTGCTTCTCAAGA+AGG + chr3_2:66633996-66634015 None:intergenic 35.0%
!! AGCACTGATAGAAATAGTGA+AGG + chr3_2:66634055-66634074 None:intergenic 35.0%
! TTTATATCGGTTGTGTAGAG+AGG - chr3_2:66634132-66634151 Msa0418790:CDS 35.0%
CTACTTATCTGCTTCCTATG+TGG + chr3_2:66631299-66631318 None:intergenic 40.0%
!! TGATGATGATTTGGTGTGCA+AGG - chr3_2:66631334-66631353 Msa0418790:three_prime_UTR 40.0%
!! GATGATGATTTGGTGTGCAA+GGG - chr3_2:66631335-66631354 Msa0418790:three_prime_UTR 40.0%
! CCTTCTTGTTGTGTTTAAGG+AGG + chr3_2:66631465-66631484 None:intergenic 40.0%
CCTCCTTAAACACAACAAGA+AGG - chr3_2:66631462-66631481 Msa0418790:three_prime_UTR 40.0%
! AAGAGCTTTGACAGTGAAAG+AGG + chr3_2:66631515-66631534 None:intergenic 40.0%
CAGTCAAAAAGAAGAGCTGA+GGG + chr3_2:66631610-66631629 None:intergenic 40.0%
ACAGTCAAAAAGAAGAGCTG+AGG + chr3_2:66631611-66631630 None:intergenic 40.0%
!! GCTCTTCTTTTTGACTGTGA+TGG - chr3_2:66631613-66631632 Msa0418790:CDS 40.0%
TGAGTTGTGCAGAAAGAACT+AGG - chr3_2:66632073-66632092 Msa0418790:intron 40.0%
AGAAAGAACTAGGCGTTACA+TGG - chr3_2:66632083-66632102 Msa0418790:intron 40.0%
GAAAGAACTAGGCGTTACAT+GGG - chr3_2:66632084-66632103 Msa0418790:intron 40.0%
TACGGTGAGTTGCTCAAAAT+TGG - chr3_2:66632118-66632137 Msa0418790:intron 40.0%
CGTACTTTAACAAGACAGGT+TGG - chr3_2:66632240-66632259 Msa0418790:CDS 40.0%
TTCCTTTCTTGTTCACCTGT+CGG + chr3_2:66632278-66632297 None:intergenic 40.0%
GCGAAAGACAGAACTATTCA+TGG - chr3_2:66632322-66632341 Msa0418790:intron 40.0%
TAACCAACTTTGCAACACCT+GGG + chr3_2:66632379-66632398 None:intergenic 40.0%
TATGGTTTCGAAACAGCTAG+GGG - chr3_2:66632528-66632547 Msa0418790:intron 40.0%
AACATATAGGCTTGTCGATC+AGG - chr3_2:66632801-66632820 Msa0418790:intron 40.0%
ACACAGCATTGTCAACAAAC+AGG + chr3_2:66632972-66632991 None:intergenic 40.0%
!!! TACTGGATCAGGCTTTTTTC+GGG + chr3_2:66633149-66633168 None:intergenic 40.0%
GAGGAAAATCTTACTGGATC+AGG + chr3_2:66633160-66633179 None:intergenic 40.0%
!!! ATGGAGCCTTTTTTACCATG+TGG - chr3_2:66633260-66633279 Msa0418790:CDS 40.0%
CCATACAATTCTACAGTTGC+TGG + chr3_2:66633524-66633543 None:intergenic 40.0%
CCAGCAACTGTAGAATTGTA+TGG - chr3_2:66633521-66633540 Msa0418790:intron 40.0%
AAATCAAATCTCTCCTCAGG+AGG + chr3_2:66633958-66633977 None:intergenic 40.0%
TCCTGAGGAGAGATTTGATT+TGG - chr3_2:66633957-66633976 Msa0418790:CDS 40.0%
CAATATGTCAGCTAGCAAAC+TGG - chr3_2:66634006-66634025 Msa0418790:CDS 40.0%
GGTAAGCCTGAAAACAAATG+AGG + chr3_2:66634083-66634102 None:intergenic 40.0%
! GATGCTATTTGCTGATGCCA+TGG + chr3_2:66631377-66631396 None:intergenic 45.0%
GCTTTGACAGTGAAAGAGGA+TGG + chr3_2:66631511-66631530 None:intergenic 45.0%
!! AAAAAGCAGAAGGCACCTCT+TGG + chr3_2:66631693-66631712 None:intergenic 45.0%
ACATGGGACGTGGAATTGTA+CGG - chr3_2:66632100-66632119 Msa0418790:intron 45.0%
GGTGAGTTGCTCAAAATTGG+AGG - chr3_2:66632121-66632140 Msa0418790:intron 45.0%
GAGTTGCTCAAAATTGGAGG+TGG - chr3_2:66632124-66632143 Msa0418790:intron 45.0%
ACGGCGTACTTTAACAAGAC+AGG - chr3_2:66632236-66632255 Msa0418790:intron 45.0%
TCCTTTCTTGTTCACCTGTC+GGG + chr3_2:66632277-66632296 None:intergenic 45.0%
GTAACCAACTTTGCAACACC+TGG + chr3_2:66632380-66632399 None:intergenic 45.0%
! GTCGATCAGGCTTTAACTCA+AGG - chr3_2:66632814-66632833 Msa0418790:intron 45.0%
TTGCAGCACTTCCAATGAGA+AGG - chr3_2:66632852-66632871 Msa0418790:intron 45.0%
TATGCATACCGCCTTCTCAT+TGG + chr3_2:66632866-66632885 None:intergenic 45.0%
TCATGACTTAGGTCCTGAGA+TGG + chr3_2:66633039-66633058 None:intergenic 45.0%
!!! ACTGGATCAGGCTTTTTTCG+GGG + chr3_2:66633148-66633167 None:intergenic 45.0%
! GCTTGCAGCTAGTCTATAGA+TGG + chr3_2:66633314-66633333 None:intergenic 45.0%
GCCAAATCAAATCTCTCCTC+AGG + chr3_2:66633961-66633980 None:intergenic 45.0%
TGGTGTGCAAGGGAAAGCTA+AGG - chr3_2:66631345-66631364 Msa0418790:three_prime_UTR 50.0%
GCAAGGGAAAGCTAAGGCAA+CGG - chr3_2:66631351-66631370 Msa0418790:three_prime_UTR 50.0%
! CTTCAACAACCAGAAGGCGT+AGG - chr3_2:66631545-66631564 Msa0418790:intron 50.0%
! TAGGTTGAGTTGCTCAGCCT+CGG - chr3_2:66631564-66631583 Msa0418790:exon 50.0%
CCTTTCTTGTTCACCTGTCG+GGG + chr3_2:66632276-66632295 None:intergenic 50.0%
CAGCACTTCCAATGAGAAGG+CGG - chr3_2:66632855-66632874 Msa0418790:intron 50.0%
! TGGATTTTTGCTGCTCGCTC+AGG + chr3_2:66633103-66633122 None:intergenic 50.0%
CCACGTCTCCTGCAAATATC+TGG + chr3_2:66633123-66633142 None:intergenic 50.0%
CCAGATATTTGCAGGAGACG+TGG - chr3_2:66633120-66633139 Msa0418790:intron 50.0%
! AGACTAGCTGCAAGCACTCT+CGG - chr3_2:66633319-66633338 Msa0418790:CDS 50.0%
!! CTCTCGGTGTTGAACCTTCA+AGG - chr3_2:66633335-66633354 Msa0418790:CDS 50.0%
TTACAGATGTGTCGTGGTCG+AGG - chr3_2:66633647-66633666 Msa0418790:intron 50.0%
TAGCAGCTGCTAAAGCAGCT+GGG - chr3_2:66633685-66633704 Msa0418790:intron 50.0%
! CTTCATTGGTGATCCTCCTG+AGG - chr3_2:66633942-66633961 Msa0418790:CDS 50.0%
GAAAGCTAAGGCAACGGCCA+TGG - chr3_2:66631357-66631376 Msa0418790:three_prime_UTR 55.0%
GCAACTCAACCTACGCCTTC+TGG + chr3_2:66631557-66631576 None:intergenic 55.0%
AAGAAGAGCTGAGGGAAGCG+TGG + chr3_2:66631602-66631621 None:intergenic 55.0%
ATGGCTCAGGTGGTTGAGGT+AGG + chr3_2:66631962-66631981 None:intergenic 55.0%
TTGTTTCCGAGGCATGGCTC+AGG + chr3_2:66631975-66631994 None:intergenic 55.0%
ACTAGGCGTTACATGGGACG+TGG - chr3_2:66632090-66632109 Msa0418790:intron 55.0%
CCCCGACAGGTGAACAAGAA+AGG - chr3_2:66632273-66632292 Msa0418790:intron 55.0%
AAACTGTTGCCTCTTCGCCC+AGG - chr3_2:66632359-66632378 Msa0418790:intron 55.0%
TTTGCAACACCTGGGCGAAG+AGG + chr3_2:66632371-66632390 None:intergenic 55.0%
! TCGCCCAGGTGTTGCAAAGT+TGG - chr3_2:66632373-66632392 Msa0418790:intron 55.0%
GTGGTCGAGGACAGTGCAAT+AGG - chr3_2:66633660-66633679 Msa0418790:intron 55.0%
CTAGCAGCTGCTAAAGCAGC+TGG - chr3_2:66633684-66633703 Msa0418790:intron 55.0%
GAGTTGCTCAGCCTCGGCTT+CGG - chr3_2:66631570-66631589 Msa0418790:exon 60.0%
AGGCATGGCTCAGGTGGTTG+AGG + chr3_2:66631966-66631985 None:intergenic 60.0%
CAACCACCTGAGCCATGCCT+CGG - chr3_2:66631966-66631985 Msa0418790:intron 60.0%
TTTCCGAGGCATGGCTCAGG+TGG + chr3_2:66631972-66631991 None:intergenic 60.0%
CGTGGAAGATGCCGAAGCCG+AGG + chr3_2:66631584-66631603 None:intergenic 65.0%
! TCACCTGTCGGGGCATTCGC+AGG + chr3_2:66632266-66632285 None:intergenic 65.0%
TGGCCTGCGAATGCCCCGAC+AGG - chr3_2:66632260-66632279 Msa0418790:CDS 70.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 66631292 66634302 66631292 ID=Msa0418790;Name=Msa0418790
chr3_2 mRNA 66631292 66634302 66631292 ID=Msa0418790-mRNA-1;Parent=Msa0418790;Name=Msa0418790-mRNA-1;_AED=0.07;_eAED=0.07;_QI=84|1|1|1|0.87|0.77|9|252|321
chr3_2 exon 66631292 66631526 66631292 ID=Msa0418790-mRNA-1:exon:15384;Parent=Msa0418790-mRNA-1
chr3_2 exon 66631557 66631697 66631557 ID=Msa0418790-mRNA-1:exon:15383;Parent=Msa0418790-mRNA-1
chr3_2 exon 66631861 66631941 66631861 ID=Msa0418790-mRNA-1:exon:15382;Parent=Msa0418790-mRNA-1
chr3_2 exon 66632238 66632284 66632238 ID=Msa0418790-mRNA-1:exon:15381;Parent=Msa0418790-mRNA-1
chr3_2 exon 66632429 66632524 66632429 ID=Msa0418790-mRNA-1:exon:15380;Parent=Msa0418790-mRNA-1
chr3_2 exon 66632718 66632784 66632718 ID=Msa0418790-mRNA-1:exon:15379;Parent=Msa0418790-mRNA-1
chr3_2 exon 66633204 66633362 66633204 ID=Msa0418790-mRNA-1:exon:15378;Parent=Msa0418790-mRNA-1
chr3_2 exon 66633439 66633509 66633439 ID=Msa0418790-mRNA-1:exon:15377;Parent=Msa0418790-mRNA-1
chr3_2 exon 66633898 66634302 66633898 ID=Msa0418790-mRNA-1:exon:15376;Parent=Msa0418790-mRNA-1
chr3_2 five_prime_UTR 66634219 66634302 66634219 ID=Msa0418790-mRNA-1:five_prime_utr;Parent=Msa0418790-mRNA-1
chr3_2 CDS 66633898 66634218 66633898 ID=Msa0418790-mRNA-1:cds;Parent=Msa0418790-mRNA-1
chr3_2 CDS 66633439 66633509 66633439 ID=Msa0418790-mRNA-1:cds;Parent=Msa0418790-mRNA-1
chr3_2 CDS 66633204 66633362 66633204 ID=Msa0418790-mRNA-1:cds;Parent=Msa0418790-mRNA-1
chr3_2 CDS 66632718 66632784 66632718 ID=Msa0418790-mRNA-1:cds;Parent=Msa0418790-mRNA-1
chr3_2 CDS 66632429 66632524 66632429 ID=Msa0418790-mRNA-1:cds;Parent=Msa0418790-mRNA-1
chr3_2 CDS 66632238 66632284 66632238 ID=Msa0418790-mRNA-1:cds;Parent=Msa0418790-mRNA-1
chr3_2 CDS 66631861 66631941 66631861 ID=Msa0418790-mRNA-1:cds;Parent=Msa0418790-mRNA-1
chr3_2 CDS 66631574 66631697 66631574 ID=Msa0418790-mRNA-1:cds;Parent=Msa0418790-mRNA-1
chr3_2 three_prime_UTR 66631557 66631573 66631557 ID=Msa0418790-mRNA-1:three_prime_utr;Parent=Msa0418790-mRNA-1
chr3_2 three_prime_UTR 66631292 66631526 66631292 ID=Msa0418790-mRNA-1:three_prime_utr;Parent=Msa0418790-mRNA-1
Gene Sequence

>Msa0418790

ATGGCATCAGCAAATAGCATCATCTCCATTTCCTCTGTTTCATTGTTGAATCGAACTCATCAACCAAAAACAACAACACTTATTAGCCTCCTTAAACACAACAAGAAGGATCATGAACAACACAGTAATTCACCATCCTCTTTCACTGTCAAAGCTCTTAAGATATCAACTTCAACAACCAGAAGGCGTAGGTTGAGTTGCTCAGCCTCGGCTTCGGCATCTTCCACGCTTCCCTCAGCTCTTCTTTTTGACTGTGATGGAGTCCTTGTTGACACTGAAAAAGATGGCCACCGCATTTCTTTCAATGATACTTTCCAAGAGAAAGAACTAGGCGTTACATGGGACGTGGAATTGTACGGTGAGTTGCTCAAAATTGGAGGTGGAAAAGAAAGGATGACGGCGTACTTTAACAAGACAGGTTGGCCTGCGAATGCCCCGACAGGTGAACAAGAAAGGAAAGATTTCATAGCTTCACTTCACAAGCGAAAGACAGAACTATTCATGGAACTTGTTGAGAAAAAACTGTTGCCTCTTCGCCCAGGTGTTGCAAAGCTTGTCGATCAGGCTTTAACTCAAGGAGTCAATGTTGCAGTTTGCAGCACTTCCAATGAGAAGGCGGTCTCTGCAATAGTATCATGTTTACTGGGACCTGAGCGAGCAGCAAAAATCCAGATATTTGCAGGAGACGTGGTTCCCCGAAAAAAGCCTGATCCAGCCATCTATAGACTAGCTGCAAGCACTCTCGGTGTTGAACCTTCAAGATGTGTCGTGGTCGAGGACAGTGCAATAGGTCTAGCAGCTGCTAAAGCAGCTGGGATGAAGTGTATAGTAACAAAGAGCGGGTATACAGCAGATGAAGATTTCTTAAATGCAGATGCTGTATTTGACTTCATTGGTGATCCTCCTGAGGAGAGATTTGATTTGGCATTTTGTGGTAGCCTTCTTGAGAAGCAATATGTCAGCTAG

Protein sequence

>Msa0418790

MASANSIISISSVSLLNRTHQPKTTTLISLLKHNKKDHEQHSNSPSSFTVKALKISTSTTRRRRLSCSASASASSTLPSALLFDCDGVLVDTEKDGHRISFNDTFQEKELGVTWDVELYGELLKIGGGKERMTAYFNKTGWPANAPTGEQERKDFIASLHKRKTELFMELVEKKLLPLRPGVAKLVDQALTQGVNVAVCSTSNEKAVSAIVSCLLGPERAAKIQIFAGDVVPRKKPDPAIYRLAASTLGVEPSRCVVVEDSAIGLAAAKAAGMKCIVTKSGYTADEDFLNADAVFDFIGDPPEERFDLAFCGSLLEKQYVS*